AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020499.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020499.01.T01 MTR_5g076840 56.655 293 44 2 259 468 560 852 8.82e-92 297
MsG0480020499.01.T01 MTR_5g076840 92.157 102 8 0 1 102 1 102 7.35e-52 188
MsG0480020499.01.T01 MTR_5g076840 60.927 151 28 3 110 229 223 373 1.10e-39 153
MsG0480020499.01.T01 MTR_4g119195 54.422 294 48 3 259 469 558 848 4.14e-80 266
MsG0480020499.01.T01 MTR_4g119195 87.255 102 13 0 1 102 1 102 6.19e-49 180
MsG0480020499.01.T01 MTR_4g119195 65.132 152 24 3 109 231 222 373 1.11e-42 162
MsG0480020499.01.T01 MTR_7g078300 50.171 293 64 3 259 469 554 846 3.29e-76 255
MsG0480020499.01.T01 MTR_7g078300 81.373 102 19 0 1 102 1 102 4.39e-45 169
MsG0480020499.01.T01 MTR_7g078300 57.047 149 35 3 109 229 221 368 5.14e-43 163
MsG0480020499.01.T01 MTR_7g078640 51.481 270 71 4 259 469 545 813 7.26e-73 246
MsG0480020499.01.T01 MTR_7g078640 81.373 102 19 0 1 102 1 102 4.80e-45 168
MsG0480020499.01.T01 MTR_7g078640 56.954 151 36 3 109 231 221 370 3.18e-43 163
MsG0480020499.01.T01 MTR_4g119140 57.534 219 73 5 259 469 506 712 4.26e-67 228
MsG0480020499.01.T01 MTR_4g119140 64.667 150 24 3 109 231 205 352 2.19e-49 180
MsG0480020499.01.T01 MTR_4g119140 73.529 102 10 1 1 102 1 85 8.69e-36 141
MsG0480020499.01.T01 MTR_1g078490 45.548 292 76 3 259 467 547 838 3.59e-63 220
MsG0480020499.01.T01 MTR_1g078490 73.529 102 27 0 1 102 1 102 6.39e-41 157
MsG0480020499.01.T01 MTR_1g078490 48.322 149 42 3 109 229 220 361 6.31e-32 130
MsG0480020499.01.T01 MTR_6g037690 87.255 102 13 0 1 102 1 102 2.88e-52 179
MsG0480020499.01.T01 MTR_4g119195 87.255 102 13 0 1 102 1 102 2.48e-49 181
MsG0480020499.01.T01 MTR_4g119195 66.000 150 22 3 109 229 222 371 4.63e-43 162
MsG0480020499.01.T01 MTR_4g119195 47.465 217 31 2 259 392 558 774 2.49e-38 149
MsG0480020499.01.T01 MTR_7g091140 30.480 479 189 12 105 439 916 1394 6.23e-48 178
MsG0480020499.01.T01 MTR_7g091140 38.589 241 101 2 274 467 619 859 1.86e-36 144
MsG0480020499.01.T01 MTR_7g091140 54.630 108 49 0 1 108 1 108 4.49e-30 125
MsG0480020499.01.T01 MTR_7g091140 41.290 155 58 3 110 231 227 381 4.89e-20 94.4
MsG0480020499.01.T01 MTR_7g078630 46.753 231 60 4 256 428 413 638 1.69e-44 167
MsG0480020499.01.T01 MTR_7g078630 34.475 438 179 18 109 457 155 573 3.33e-44 166
MsG0480020499.01.T01 MTR_4g052500 72.727 132 19 2 341 472 417 531 5.82e-44 162
MsG0480020499.01.T01 MTR_2g062360 40.435 230 106 2 271 469 367 596 1.15e-40 154
MsG0480020499.01.T01 MTR_2g062360 41.481 135 44 5 129 231 1 132 5.97e-18 87.0
MsG0480020499.01.T01 MTR_7g091110 35.918 245 110 2 274 471 598 842 4.77e-35 139
MsG0480020499.01.T01 MTR_7g091110 47.059 102 54 0 1 102 1 102 1.28e-23 105
MsG0480020499.01.T01 MTR_7g091110 42.308 156 56 3 110 231 227 382 2.66e-23 103
MsG0480020499.01.T01 MTR_7g491180 33.225 307 123 5 246 470 556 862 6.55e-34 136
MsG0480020499.01.T01 MTR_7g491180 53.922 102 47 0 1 102 1 102 1.72e-26 113
MsG0480020499.01.T01 MTR_7g491180 43.226 155 55 3 110 231 227 381 4.47e-24 106
MsG0480020499.01.T01 MTR_7g091190 33.225 307 123 5 246 470 556 862 6.55e-34 136
MsG0480020499.01.T01 MTR_7g091190 53.922 102 47 0 1 102 1 102 1.72e-26 113
MsG0480020499.01.T01 MTR_7g091190 43.226 155 55 3 110 231 227 381 4.47e-24 106
MsG0480020499.01.T01 MTR_4g094540 37.778 225 110 2 274 469 629 852 7.20e-33 133
MsG0480020499.01.T01 MTR_4g094540 35.256 156 58 4 110 231 228 374 7.09e-14 74.7
MsG0480020499.01.T01 MTR_4g094540 34.343 99 65 0 4 102 3 101 2.60e-13 72.8
MsG0480020499.01.T01 MTR_1g047910 37.097 248 106 2 274 471 617 864 1.25e-32 132
MsG0480020499.01.T01 MTR_1g047910 43.709 151 56 3 110 231 229 379 7.45e-24 105
MsG0480020499.01.T01 MTR_1g047910 48.039 102 53 0 1 102 1 102 8.77e-24 105
MsG0480020499.01.T01 MTR_7g491190 33.219 292 112 5 262 471 524 814 6.00e-31 127
MsG0480020499.01.T01 MTR_7g491190 40.385 156 85 3 1 148 1 156 4.75e-26 112
MsG0480020499.01.T01 MTR_7g491190 45.133 113 34 2 147 231 231 343 1.30e-17 86.7
MsG0480020499.01.T01 MTR_7g091200 33.219 292 112 5 262 471 543 833 7.57e-31 127
MsG0480020499.01.T01 MTR_7g091200 40.385 156 85 3 1 148 1 156 5.26e-26 112
MsG0480020499.01.T01 MTR_7g091200 43.333 150 43 3 110 231 227 362 1.46e-22 101
MsG0480020499.01.T01 MTR_7g091550 35.857 251 99 6 264 452 595 845 2.61e-29 122
MsG0480020499.01.T01 MTR_7g091550 46.711 152 49 4 110 231 231 380 6.88e-29 121
MsG0480020499.01.T01 MTR_7g091550 55.882 102 45 0 1 102 3 104 9.14e-29 120
MsG0480020499.01.T01 MTR_7g091550 41.935 155 60 3 107 231 1061 1215 2.70e-25 110
MsG0480020499.01.T01 MTR_8g445160 26.916 509 261 17 31 469 211 678 3.74e-26 112
MsG0480020499.01.T01 MTR_2g062350 51.961 102 39 1 1 102 1 92 5.20e-26 103
MsG0480020499.01.T01 MTR_1g047920 35.821 201 80 4 301 452 1 201 6.35e-26 106
MsG0480020499.01.T01 MTR_7g091570 50.000 102 51 0 1 102 1 102 1.47e-25 105
MsG0480020499.01.T01 MTR_7g078260 66.667 66 22 0 404 469 16 81 1.17e-23 95.1
MsG0480020499.01.T01 MTR_1g047870 40.714 140 51 3 124 231 2 141 6.60e-22 98.6
MsG0480020499.01.T01 MTR_1g047870 42.105 114 66 0 358 471 334 447 8.43e-21 95.1
MsG0480020499.01.T01 MTR_8g445980 30.417 240 116 3 279 469 604 841 7.75e-21 96.3
MsG0480020499.01.T01 MTR_8g445980 38.202 89 55 0 4 92 6 94 9.30e-12 67.8
MsG0480020499.01.T01 MTR_5g035450 30.112 269 146 6 237 467 16 280 1.77e-18 87.8
MsG0480020499.01.T01 MTR_3g026660 33.333 186 118 3 289 469 952 1136 1.89e-18 89.4
MsG0480020499.01.T01 MTR_3g026660 32.886 149 62 4 110 231 223 360 1.30e-11 67.8
MsG0480020499.01.T01 MTR_3g026660 33.333 186 118 3 289 469 895 1079 1.92e-18 89.4
MsG0480020499.01.T01 MTR_3g026660 32.886 149 62 4 110 231 223 360 1.34e-11 67.4
MsG0480020499.01.T01 MTR_7g091560 34.872 195 101 5 264 435 90 281 2.66e-18 85.5
MsG0480020499.01.T01 MTR_8g010440 47.727 88 46 0 1 88 1 88 3.82e-18 88.2
MsG0480020499.01.T01 MTR_8g010440 37.778 90 39 2 112 198 224 299 4.78e-11 65.9
MsG0480020499.01.T01 MTR_8g027540 39.823 113 67 1 1 112 1 113 6.65e-18 87.4
MsG0480020499.01.T01 MTR_8g027540 38.462 91 46 2 111 201 224 304 1.33e-12 70.9
MsG0480020499.01.T01 MTR_0144s0010 30.357 224 126 6 276 471 185 406 7.01e-18 86.3
MsG0480020499.01.T01 MTR_5g028750 34.831 178 93 4 291 467 916 1071 8.07e-18 87.0
MsG0480020499.01.T01 MTR_4g126000 28.390 236 104 5 17 198 13 237 1.57e-17 86.3
MsG0480020499.01.T01 MTR_6g046550 34.197 193 124 3 279 469 464 655 1.83e-17 85.9
MsG0480020499.01.T01 MTR_7g013560 44.086 93 51 1 1 92 1 93 2.79e-17 85.5
MsG0480020499.01.T01 MTR_7g013560 40.426 94 46 2 112 205 225 308 6.75e-14 74.7
MsG0480020499.01.T01 MTR_5g035530 33.149 181 118 3 291 469 796 975 2.90e-17 85.5
MsG0480020499.01.T01 MTR_6g047450 32.620 187 92 5 289 469 942 1100 4.18e-17 85.1
MsG0480020499.01.T01 MTR_8g011550 43.478 92 51 1 1 91 1 92 4.99e-17 84.7
MsG0480020499.01.T01 MTR_8g011550 42.529 87 40 2 112 198 225 301 1.40e-13 73.9
MsG0480020499.01.T01 MTR_8g011300 43.182 88 50 0 1 88 1 88 5.38e-17 84.7
MsG0480020499.01.T01 MTR_6g046570 34.021 194 123 4 279 469 886 1077 6.00e-17 84.3
MsG0480020499.01.T01 MTR_0256s0050 33.962 212 119 7 270 469 859 1061 7.88e-17 84.0
MsG0480020499.01.T01 MTR_0256s0050 34.426 122 69 1 110 231 211 321 1.79e-13 73.6
MsG0480020499.01.T01 MTR_8g011170 43.956 91 51 0 1 91 1 91 1.02e-16 83.6
MsG0480020499.01.T01 MTR_8g011170 41.667 96 46 2 102 197 200 285 9.36e-13 71.2
MsG0480020499.01.T01 MTR_6g452490 44.318 88 49 0 1 88 1 88 1.27e-16 83.6
MsG0480020499.01.T01 MTR_5g028340 37.427 171 100 5 310 475 917 1085 1.39e-16 83.2
MsG0480020499.01.T01 MTR_0065s0100 42.391 92 52 1 1 91 1 92 1.73e-16 82.8
MsG0480020499.01.T01 MTR_0065s0100 38.636 88 45 1 111 198 224 302 3.63e-12 69.3
MsG0480020499.01.T01 MTR_0534s0010 32.961 179 96 2 292 469 11 166 1.76e-16 77.4
MsG0480020499.01.T01 MTR_3g007190 27.803 223 130 6 9 201 5 226 3.32e-16 82.0
MsG0480020499.01.T01 MTR_3g015500 41.584 101 54 2 3 103 40 135 3.67e-16 82.0
MsG0480020499.01.T01 MTR_3g015500 42.697 89 35 2 110 198 254 326 7.11e-12 68.2
MsG0480020499.01.T01 MTR_7g084790 40.741 135 49 5 113 231 8 127 3.75e-16 80.9
MsG0480020499.01.T01 MTR_8g011180 40.217 92 55 0 1 92 1 92 3.78e-16 82.0
MsG0480020499.01.T01 MTR_8g011180 37.838 111 54 3 91 201 208 303 2.22e-15 79.3
MsG0480020499.01.T01 MTR_0133s0020 31.156 199 110 5 291 464 892 1088 3.96e-16 82.0
MsG0480020499.01.T01 MTR_5g028290 34.595 185 109 3 291 475 952 1124 6.51e-16 81.3
MsG0480020499.01.T01 MTR_5g037500 36.620 142 89 1 328 469 842 982 7.51e-16 80.9
MsG0480020499.01.T01 MTR_5g037500 28.500 400 195 16 110 440 223 600 6.48e-15 78.2
MsG0480020499.01.T01 MTR_8g037220 39.130 92 56 0 1 92 780 871 9.87e-16 80.9
MsG0480020499.01.T01 MTR_8g037220 29.319 191 115 6 295 467 1550 1738 2.98e-12 69.7
MsG0480020499.01.T01 MTR_5g037450 33.149 181 116 4 292 469 921 1099 1.13e-15 80.5
MsG0480020499.01.T01 MTR_5g037450 38.043 92 46 1 110 201 227 307 8.43e-11 65.1
MsG0480020499.01.T01 MTR_4g050790 39.583 96 57 1 8 103 3 97 1.16e-15 80.1
MsG0480020499.01.T01 MTR_4g050790 42.697 89 35 2 110 198 216 288 5.93e-12 68.6
MsG0480020499.01.T01 MTR_8g037220 39.130 92 56 0 1 92 1001 1092 1.17e-15 80.5
MsG0480020499.01.T01 MTR_8g037220 29.319 191 115 6 295 467 1771 1959 2.16e-12 70.1
MsG0480020499.01.T01 MTR_6g046130 35.393 178 85 6 289 464 920 1069 1.22e-15 80.5
MsG0480020499.01.T01 MTR_6g046130 39.130 92 45 2 110 201 212 292 3.65e-11 66.2
MsG0480020499.01.T01 MTR_7g091660 44.086 93 49 1 9 98 1 93 1.29e-15 79.3
MsG0480020499.01.T01 MTR_5g035280 30.732 205 114 7 291 468 888 1091 1.36e-15 80.1
MsG0480020499.01.T01 MTR_3g086070 32.418 182 94 3 289 469 937 1090 2.23e-15 79.7
MsG0480020499.01.T01 MTR_3g086070 39.785 93 45 1 110 202 211 292 1.38e-12 70.9
MsG0480020499.01.T01 MTR_8g011850 41.304 92 49 1 1 92 1102 1188 5.38e-15 78.6
MsG0480020499.01.T01 MTR_8g011850 27.551 196 123 4 284 462 1815 2008 2.50e-11 67.0
MsG0480020499.01.T01 MTR_5g028070 31.183 186 106 3 291 475 1077 1241 6.32e-15 78.2
MsG0480020499.01.T01 MTR_5g028420 32.022 178 94 3 291 465 929 1082 1.85e-14 76.6
MsG0480020499.01.T01 MTR_5g040770 28.958 259 146 7 217 472 594 817 2.09e-14 76.3
MsG0480020499.01.T01 MTR_4g055630 31.841 201 132 2 274 471 846 1044 2.18e-14 76.3
MsG0480020499.01.T01 MTR_6g046620 27.966 236 140 8 247 466 802 1023 3.41e-14 75.9
MsG0480020499.01.T01 MTR_6g046750 32.979 188 123 3 279 464 200 386 3.55e-14 74.7
MsG0480020499.01.T01 MTR_0511s0010 31.343 201 108 6 274 472 64 236 4.81e-14 72.0
MsG0480020499.01.T01 MTR_8g036195 29.114 237 142 6 262 472 846 1082 5.04e-14 75.1
MsG0480020499.01.T01 MTR_8g036195 40.860 93 44 2 110 202 212 293 3.83e-12 69.3
MsG0480020499.01.T01 MTR_6g046750 32.979 188 123 3 279 464 247 433 5.39e-14 74.3
MsG0480020499.01.T01 MTR_4g022560 26.374 273 129 6 15 231 96 352 7.57e-14 74.7
MsG0480020499.01.T01 MTR_3g063360 43.373 83 47 0 1 83 1 83 8.57e-14 68.2
MsG0480020499.01.T01 MTR_4g025370 43.373 83 47 0 1 83 12 94 1.44e-13 67.8
MsG0480020499.01.T01 MTR_6g046930 32.990 194 112 7 282 466 905 1089 1.73e-13 73.6
MsG0480020499.01.T01 MTR_6g046930 36.957 92 47 2 110 201 210 290 8.04e-11 65.1
MsG0480020499.01.T01 MTR_6g052760 33.032 221 113 9 256 469 899 1091 2.05e-13 73.2
MsG0480020499.01.T01 MTR_1g030770 41.758 91 53 0 1 91 1 91 2.14e-13 73.2
MsG0480020499.01.T01 MTR_1g030770 41.379 87 41 2 112 198 224 300 1.67e-11 67.4
MsG0480020499.01.T01 MTR_0230s0010 27.136 398 201 20 110 448 212 579 2.25e-13 73.2
MsG0480020499.01.T01 MTR_4g025370 43.373 83 47 0 1 83 1 83 3.25e-13 66.6
MsG0480020499.01.T01 MTR_8g011600 43.182 88 40 2 110 197 56 133 3.26e-13 72.4
MsG0480020499.01.T01 MTR_6g052455 29.880 251 133 10 226 469 766 980 3.30e-13 72.8
MsG0480020499.01.T01 MTR_5g037460 30.159 189 115 6 284 469 626 800 3.56e-13 72.4
MsG0480020499.01.T01 MTR_4g021690 30.667 150 60 3 110 231 219 352 3.66e-13 72.4
MsG0480020499.01.T01 MTR_3g015560 42.697 89 35 1 110 198 216 288 4.78e-13 72.0
MsG0480020499.01.T01 MTR_6g016430 43.478 92 42 2 110 201 212 293 8.62e-13 71.2
MsG0480020499.01.T01 MTR_6g046480 32.609 184 93 6 289 469 923 1078 1.06e-12 71.2
MsG0480020499.01.T01 MTR_3g015550 42.697 89 35 1 110 198 253 325 1.47e-12 70.5
MsG0480020499.01.T01 MTR_3g015550 42.857 98 55 1 4 101 36 132 6.65e-11 65.1
MsG0480020499.01.T01 MTR_3g015550 42.697 89 35 1 110 198 216 288 1.56e-12 70.5
MsG0480020499.01.T01 MTR_5g028610 33.333 141 92 2 336 475 942 1081 1.86e-12 70.5
MsG0480020499.01.T01 MTR_6g046440 33.516 182 93 4 289 469 881 1035 2.37e-12 70.1
MsG0480020499.01.T01 MTR_2g078070 38.636 88 43 2 111 198 228 304 3.17e-12 69.7
MsG0480020499.01.T01 MTR_2g078070 30.556 108 75 0 1 108 1 108 6.67e-11 65.5
MsG0480020499.01.T01 MTR_4g022540 36.957 92 42 1 110 201 219 294 3.35e-12 69.3
MsG0480020499.01.T01 MTR_4g022480 38.043 92 41 1 110 201 219 294 3.45e-12 69.3
MsG0480020499.01.T01 MTR_0511s0020 30.769 221 118 9 256 469 879 1071 5.82e-12 68.6
MsG0480020499.01.T01 MTR_8g011280 39.130 92 44 2 111 201 88 168 6.54e-12 68.6
MsG0480020499.01.T01 MTR_5g035480 35.542 166 103 4 306 468 835 999 8.87e-12 68.2
MsG0480020499.01.T01 MTR_8g011590 38.636 88 44 1 111 198 106 183 9.07e-12 68.2
MsG0480020499.01.T01 MTR_4g022960 36.957 92 42 1 110 201 219 294 9.30e-12 68.2
MsG0480020499.01.T01 MTR_6g046760 29.130 230 133 6 262 468 209 431 9.46e-12 67.4
MsG0480020499.01.T01 MTR_3g023320 28.139 231 139 7 261 464 863 1093 1.06e-11 67.8
MsG0480020499.01.T01 MTR_3g023320 39.785 93 45 2 110 202 212 293 7.30e-11 65.1
MsG0480020499.01.T01 MTR_8g043600 25.000 264 135 6 15 231 65 312 1.14e-11 67.4
MsG0480020499.01.T01 MTR_4g022460 36.957 92 42 1 110 201 219 294 1.31e-11 67.4
MsG0480020499.01.T01 MTR_5g035200 33.099 142 71 2 328 469 242 359 1.58e-11 66.2
MsG0480020499.01.T01 MTR_5g040900 31.841 201 102 7 289 469 697 882 2.45e-11 66.6
MsG0480020499.01.T01 MTR_0144s0060 39.130 92 45 2 110 201 212 292 2.53e-11 66.6
MsG0480020499.01.T01 MTR_0133s0030 28.163 245 150 7 240 472 866 1096 2.81e-11 66.6
MsG0480020499.01.T01 MTR_6g046900 31.383 188 123 3 285 469 191 375 2.89e-11 65.5
MsG0480020499.01.T01 MTR_5g034770 36.264 91 47 1 111 201 209 288 3.95e-11 65.9
MsG0480020499.01.T01 MTR_7g091090 32.515 163 61 6 102 231 81 227 6.11e-11 64.3
MsG0480020499.01.T01 MTR_6g016420 38.889 90 45 1 112 201 212 291 8.65e-11 65.1
MsG0480020499.01.T01 MTR_6g016420 38.889 90 45 1 112 201 212 291 8.84e-11 65.1
MsG0480020499.01.T01 MTR_5g039570 27.839 273 126 11 111 344 186 426 8.99e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020499.01.T01 AT1G69550 35.227 176 109 4 274 446 916 1089 2.85e-14 76.3
MsG0480020499.01.T01 AT1G69550 34.659 176 109 4 274 446 988 1160 1.42e-13 73.9
MsG0480020499.01.T01 AT1G69550 31.156 199 110 5 274 446 868 1065 4.49e-12 69.3
MsG0480020499.01.T01 AT1G69550 30.049 203 116 4 274 451 1012 1213 3.31e-11 66.6
MsG0480020499.01.T01 AT3G44480 31.658 199 130 5 250 446 675 869 3.58e-11 66.2
MsG0480020499.01.T01 AT3G44480 31.658 199 130 5 250 446 675 869 3.58e-11 66.2
MsG0480020499.01.T01 AT3G44480 31.658 199 130 5 250 446 675 869 3.90e-11 66.2
MsG0480020499.01.T01 AT3G44480 31.658 199 130 5 250 446 675 869 3.90e-11 66.2
MsG0480020499.01.T01 AT3G44480 31.658 199 130 5 250 446 675 869 4.48e-11 65.9

Find 85 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCCAATCTCCACCAATTT+TGG 0.114999 4:-42500865 None:intergenic
TGAAGCTTTCTTGAACATTT+TGG 0.164682 4:+42501464 MsG0480020499.01.T01:CDS
GCACATCCTTGCAACCATTT+AGG 0.231758 4:-42502036 None:intergenic
CTTGAAAATTTATTAATTAG+AGG 0.245903 4:+42502210 MsG0480020499.01.T01:CDS
CTAAACTTCTCCTGGTGAAT+TGG 0.263472 4:-42500553 None:intergenic
AACTTGTGAGTATTCCTAAA+TGG 0.288386 4:+42502022 MsG0480020499.01.T01:CDS
CGTTGTCAGTATTTGTGAAA+TGG 0.320245 4:+42500813 MsG0480020499.01.T01:intron
GAAGTTTAGAAGCCTTGATT+TGG 0.333623 4:+42500567 MsG0480020499.01.T01:CDS
CTCAATTCAGCTAGTGTTAG+TGG 0.338249 4:+42500514 MsG0480020499.01.T01:CDS
AACTTTGCAATCTCTTTGTC+TGG 0.347575 4:-42501754 None:intergenic
TGAGGAAGCGAAAGCAATTT+CGG 0.348787 4:-42502165 None:intergenic
TGGTATCTCGTAAATAATTC+AGG 0.369039 4:-42502237 None:intergenic
TAAACTTCTCCTGGTGAATT+GGG 0.369779 4:-42500552 None:intergenic
GCAACTTCAGCTTTAACTTC+GGG 0.370824 4:-42501978 None:intergenic
TATCCAAAATTGGTGGAGAT+TGG 0.371425 4:+42500862 MsG0480020499.01.T01:CDS
GACCAGTAGGAATTGGTGTT+TGG 0.379524 4:-42501408 None:intergenic
ATCAAATTTCCTATTCCATT+GGG 0.384235 4:-42501688 None:intergenic
TGCTTGTCTTGGACGATGTA+TGG 0.387063 4:+42500638 MsG0480020499.01.T01:CDS
GTTGTCAGTATTTGTGAAAT+GGG 0.401617 4:+42500814 MsG0480020499.01.T01:intron
ATCCAAAATTGGTGGAGATT+GGG 0.404201 4:+42500863 MsG0480020499.01.T01:CDS
CAAACATTACCCAATGGAAT+AGG 0.409805 4:+42501679 MsG0480020499.01.T01:CDS
GTTCTTAGACCAGTAGGAAT+TGG 0.412348 4:-42501415 None:intergenic
ATCAAGGTGCAAATTCTTGC+GGG 0.413697 4:+42501488 MsG0480020499.01.T01:CDS
AGCAACTTCAGCTTTAACTT+CGG 0.416298 4:-42501979 None:intergenic
GATCAAATTTCCTATTCCAT+TGG 0.421940 4:-42501689 None:intergenic
TTTGTAGCTGCTCCAAATCA+AGG 0.431189 4:-42500579 None:intergenic
AAGCAAATCATCAACACTTC+AGG 0.437278 4:+42500197 MsG0480020499.01.T01:CDS
ACTCATCAAAGCAGTGTTGT+TGG 0.443439 4:+42500058 MsG0480020499.01.T01:CDS
GGAACCAGGATCGTGTCAAA+TGG 0.446637 4:+42500659 MsG0480020499.01.T01:CDS
TTCTCCTGGTGAATTGGGTT+AGG 0.459929 4:-42500547 None:intergenic
CATCTGAGAAATGAGATTGC+TGG 0.467713 4:+42500604 MsG0480020499.01.T01:CDS
GGTGTGGCAGAGTCATTCAT+TGG 0.468367 4:+42499951 MsG0480020499.01.T01:CDS
CTGCACACTTTGAAACTCAA+TGG 0.469783 4:+42501643 MsG0480020499.01.T01:CDS
TGCCAATCATGTCCGACTCC+AGG 0.475884 4:-42502261 None:intergenic
TGTGAAATGGGCTTTAAAGA+GGG 0.479554 4:+42500826 MsG0480020499.01.T01:CDS
TAAGAACTATCATATTCCTA+AGG 0.482547 4:+42501431 MsG0480020499.01.T01:CDS
CAAGGCTTCTAAACTTCTCC+TGG 0.486592 4:-42500561 None:intergenic
GTTGATGATTTGCTTTCGTA+AGG 0.489488 4:-42500189 None:intergenic
TTGTGAAATGGGCTTTAAAG+AGG 0.494383 4:+42500825 MsG0480020499.01.T01:CDS
GCTTCATCGTTGGCTCCCTT+AGG 0.495459 4:-42501447 None:intergenic
ATTTATTGAAAATGATTGCT+TGG 0.495868 4:+42501385 MsG0480020499.01.T01:CDS
TCAGCCATTCACGTAGCTCA+TGG 0.506524 4:-42500106 None:intergenic
CAACCCATTTGACACGATCC+TGG 0.510144 4:-42500663 None:intergenic
ACACACACCCACATCTTCAA+TGG 0.510952 4:-42500451 None:intergenic
ATGGCAGAATCACTCCTCTT+CGG 0.518542 4:+42499930 MsG0480020499.01.T01:CDS
CATCAAGGTGCAAATTCTTG+CGG 0.519931 4:+42501487 MsG0480020499.01.T01:CDS
GAACCAGGATCGTGTCAAAT+GGG 0.521141 4:+42500660 MsG0480020499.01.T01:CDS
ATGATAGTTCTTAGACCAGT+AGG 0.526074 4:-42501421 None:intergenic
AGCCTGGAGTCGGACATGAT+TGG 0.536977 4:+42502259 MsG0480020499.01.T01:CDS
GGCCAAACACCAATTCCTAC+TGG 0.543998 4:+42501406 MsG0480020499.01.T01:CDS
CACTAACACTAGCTGAATTG+AGG 0.545365 4:-42500513 None:intergenic
CTTGGACGATGTATGGAACC+AGG 0.564969 4:+42500645 MsG0480020499.01.T01:CDS
TTAATACAAGTCGGTGCCGA+AGG 0.565180 4:+42500697 MsG0480020499.01.T01:CDS
TATTCAGATTGTCACAATCT+CGG 0.572285 4:-42501801 None:intergenic
AATCATGTCCGACTCCAGGC+TGG 0.574766 4:-42502257 None:intergenic
AAGAACTATCATATTCCTAA+GGG 0.575934 4:+42501432 MsG0480020499.01.T01:CDS
TTAGGAATACTCACAAGTTG+TGG 0.576370 4:-42502018 None:intergenic
TAGGAAATTTGATCAGCCTC+CGG 0.576727 4:+42501698 MsG0480020499.01.T01:CDS
TTGTAGTTATAAATAGCTGC+CGG 0.577916 4:-42501717 None:intergenic
TTGAAGAATTTAATACAAGT+CGG 0.578111 4:+42500688 MsG0480020499.01.T01:CDS
GTTCAAGAAAGCTTCATCGT+TGG 0.578238 4:-42501457 None:intergenic
TGCTCCTAACCCAATTCACC+AGG 0.579633 4:+42500543 MsG0480020499.01.T01:CDS
ACGAGATACCAGCCTGGAGT+CGG 0.584389 4:+42502249 MsG0480020499.01.T01:CDS
ATCACACATCAAACAAGTGA+AGG 0.598773 4:+42502290 MsG0480020499.01.T01:CDS
ACACTTCAGGTAGCATGAGA+AGG 0.600542 4:+42500210 MsG0480020499.01.T01:CDS
AATGGCTGAAACAGATTAAG+CGG 0.603361 4:+42500120 MsG0480020499.01.T01:CDS
TGATAACTCCATTGAAGATG+TGG 0.605626 4:+42500443 MsG0480020499.01.T01:CDS
AAACTTCAAACATTACCCAA+TGG 0.611301 4:+42501673 MsG0480020499.01.T01:CDS
TGCCAACGTGAGTAATGTGT+CGG 0.620381 4:-42502058 None:intergenic
TTCAGGTAGCATGAGAAGGA+AGG 0.628821 4:+42500214 MsG0480020499.01.T01:CDS
GGAAGGCAATGTGTGTCTTG+AGG 0.630221 4:-42502183 None:intergenic
ATGGCTGAAACAGATTAAGC+GGG 0.630523 4:+42500121 MsG0480020499.01.T01:CDS
ATGACTCTGCCACACCGAAG+AGG 0.634256 4:-42499944 None:intergenic
AGAACCATGAGCTACGTGAA+TGG 0.634912 4:+42500102 MsG0480020499.01.T01:CDS
ACAAGAGTTGATAACCACTC+AGG 0.635983 4:-42502111 None:intergenic
AGTATTCCTAAATGGTTGCA+AGG 0.642643 4:+42502030 MsG0480020499.01.T01:CDS
TAGTTATAAATAGCTGCCGG+AGG 0.652366 4:-42501714 None:intergenic
TGGACGCTGAACAAAAGCAA+TGG 0.657831 4:+42500078 MsG0480020499.01.T01:CDS
AGAATCACTCCTCTTCGGTG+TGG 0.660695 4:+42499935 MsG0480020499.01.T01:CDS
TTATTTACGAGATACCAGCC+TGG 0.669558 4:+42502243 MsG0480020499.01.T01:CDS
TGCCGACACATTACTCACGT+TGG 0.671603 4:+42502056 MsG0480020499.01.T01:CDS
AATCGATGATTTCGAATGTG+AGG 0.673819 4:+42500166 MsG0480020499.01.T01:CDS
TTGTGACAATCTGAATACCT+TGG 0.695138 4:+42501807 MsG0480020499.01.T01:CDS
ATCTTGATGAGCTTCCTGAG+TGG 0.717709 4:+42502097 MsG0480020499.01.T01:CDS
GATAACTCCATTGAAGATGT+GGG 0.726031 4:+42500444 MsG0480020499.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTGAAAATTTATTAATTAG+AGG + Chr4:42502210-42502229 MsG0480020499.01.T01:CDS 15.0%
!!! AAACATCTTTTTAAATAAGA+AGG - Chr4:42501063-42501082 None:intergenic 15.0%
!!! ATTAATAAATTTTCAAGGTT+TGG - Chr4:42502207-42502226 None:intergenic 15.0%
!!! CTCTAATTAATAAATTTTCA+AGG - Chr4:42502212-42502231 None:intergenic 15.0%
!! AGAGAAAAAATATCCAAAAT+TGG + Chr4:42500852-42500871 MsG0480020499.01.T01:CDS 20.0%
!! ATTTATTGAAAATGATTGCT+TGG + Chr4:42501385-42501404 MsG0480020499.01.T01:CDS 20.0%
!! TTGAAGAATTTAATACAAGT+CGG + Chr4:42500688-42500707 MsG0480020499.01.T01:CDS 20.0%
!! TTTCAAAATGTATGATGTAT+TGG - Chr4:42500774-42500793 None:intergenic 20.0%
!!! AATACATCATACATTTTGAA+AGG + Chr4:42500773-42500792 MsG0480020499.01.T01:intron 20.0%
! AAGAACTATCATATTCCTAA+GGG + Chr4:42501432-42501451 MsG0480020499.01.T01:CDS 25.0%
! AATCCATAAATACTCTAAGT+TGG - Chr4:42501918-42501937 None:intergenic 25.0%
! ATCAAATTTCCTATTCCATT+GGG - Chr4:42501691-42501710 None:intergenic 25.0%
! ATCCATAAATACTCTAAGTT+GGG - Chr4:42501917-42501936 None:intergenic 25.0%
! GAAAAAATATCCAAAATTGG+TGG + Chr4:42500855-42500874 MsG0480020499.01.T01:CDS 25.0%
! GAAAGAATTGTACAAAAATG+TGG + Chr4:42500885-42500904 MsG0480020499.01.T01:intron 25.0%
! TAAAAATTGATGTAGAAGAG+TGG + Chr4:42500952-42500971 MsG0480020499.01.T01:intron 25.0%
! TAAGAACTATCATATTCCTA+AGG + Chr4:42501431-42501450 MsG0480020499.01.T01:CDS 25.0%
! TATCAAAGAGAGATTTGATA+AGG + Chr4:42500302-42500321 MsG0480020499.01.T01:intron 25.0%
! TCTAATTGCAATTCAACTTA+TGG - Chr4:42501948-42501967 None:intergenic 25.0%
!! TCATAACTTAATTTGATAGC+AGG - Chr4:42501033-42501052 None:intergenic 25.0%
!! TGATTTGATGTTCCATTTTA+AGG - Chr4:42500279-42500298 None:intergenic 25.0%
!! TTTTCATGTTCATGTGTTAT+GGG + Chr4:42501125-42501144 MsG0480020499.01.T01:intron 25.0%
!!! ACTTTAAGATATCTCAATCT+TGG + Chr4:42501569-42501588 MsG0480020499.01.T01:intron 25.0%
!!! ATAAATTTTCAAGGTTTGGA+AGG - Chr4:42502203-42502222 None:intergenic 25.0%
!!! CTTTAAGATATCTCAATCTT+GGG + Chr4:42501570-42501589 MsG0480020499.01.T01:intron 25.0%
!!! TTTAATTTTCCAATAGAGCA+GGG - Chr4:42501549-42501568 None:intergenic 25.0%
!!! TTTTAATTTTCCAATAGAGC+AGG - Chr4:42501550-42501569 None:intergenic 25.0%
AAACTTCAAACATTACCCAA+TGG + Chr4:42501673-42501692 MsG0480020499.01.T01:CDS 30.0%
AACTTGTGAGTATTCCTAAA+TGG + Chr4:42502022-42502041 MsG0480020499.01.T01:CDS 30.0%
AGAATTGTACAAAAATGTGG+AGG + Chr4:42500888-42500907 MsG0480020499.01.T01:intron 30.0%
CAAAGTCTTCAAAATCTTGA+AGG - Chr4:42501241-42501260 None:intergenic 30.0%
GAATTGTACAAAAATGTGGA+GGG + Chr4:42500889-42500908 MsG0480020499.01.T01:intron 30.0%
GATCAAATTTCCTATTCCAT+TGG - Chr4:42501692-42501711 None:intergenic 30.0%
GCGATAATCATGTTGTAAAA+AGG + Chr4:42500367-42500386 MsG0480020499.01.T01:intron 30.0%
GTTGTCAGTATTTGTGAAAT+GGG + Chr4:42500814-42500833 MsG0480020499.01.T01:intron 30.0%
TAAAAAGTTCTTGCTTGTCT+TGG + Chr4:42500627-42500646 MsG0480020499.01.T01:CDS 30.0%
TATCAAGGACAGTGAAATTT+GGG + Chr4:42500980-42500999 MsG0480020499.01.T01:intron 30.0%
TATTCAGATTGTCACAATCT+CGG - Chr4:42501804-42501823 None:intergenic 30.0%
TGGTATCTCGTAAATAATTC+AGG - Chr4:42502240-42502259 None:intergenic 30.0%
TTATCAAGGACAGTGAAATT+TGG + Chr4:42500979-42500998 MsG0480020499.01.T01:intron 30.0%
TTGTAGTTATAAATAGCTGC+CGG - Chr4:42501720-42501739 None:intergenic 30.0%
! CGTTGATTATTTCTTCTTGT+GGG + Chr4:42501861-42501880 MsG0480020499.01.T01:intron 30.0%
! GTTTTCATGTTCATGTGTTA+TGG + Chr4:42501124-42501143 MsG0480020499.01.T01:intron 30.0%
! TCGTTGATTATTTCTTCTTG+TGG + Chr4:42501860-42501879 MsG0480020499.01.T01:intron 30.0%
! TCTTGTTTATCGCCTTAAAA+TGG + Chr4:42500264-42500283 MsG0480020499.01.T01:intron 30.0%
! TGAAGCTTTCTTGAACATTT+TGG + Chr4:42501464-42501483 MsG0480020499.01.T01:CDS 30.0%
! TTCCCAACTTAGAGTATTTA+TGG + Chr4:42501912-42501931 MsG0480020499.01.T01:intron 30.0%
!! ATACATTTTGAAAGGTCTCT+CGG + Chr4:42500781-42500800 MsG0480020499.01.T01:intron 30.0%
!! CTTCAAGATTTTGAAGACTT+TGG + Chr4:42501239-42501258 MsG0480020499.01.T01:intron 30.0%
!! TATCGCTATCATTGATTTGA+AGG - Chr4:42500353-42500372 None:intergenic 30.0%
!!! ATTTTAAGGCGATAAACAAG+AGG - Chr4:42500265-42500284 None:intergenic 30.0%
AACCAAACAGAGTAAAACCT+TGG + Chr4:42501169-42501188 MsG0480020499.01.T01:intron 35.0%
AACTTTGCAATCTCTTTGTC+TGG - Chr4:42501757-42501776 None:intergenic 35.0%
AAGCAAATCATCAACACTTC+AGG + Chr4:42500197-42500216 MsG0480020499.01.T01:CDS 35.0%
AATCGATGATTTCGAATGTG+AGG + Chr4:42500166-42500185 MsG0480020499.01.T01:CDS 35.0%
AATGGCTGAAACAGATTAAG+CGG + Chr4:42500120-42500139 MsG0480020499.01.T01:CDS 35.0%
AGAAGAGTGGAAGTTTATCA+AGG + Chr4:42500965-42500984 MsG0480020499.01.T01:intron 35.0%
AGTATTCCTAAATGGTTGCA+AGG + Chr4:42502030-42502049 MsG0480020499.01.T01:CDS 35.0%
ATCACACATCAAACAAGTGA+AGG + Chr4:42502290-42502309 MsG0480020499.01.T01:CDS 35.0%
ATCCAAAATTGGTGGAGATT+GGG + Chr4:42500863-42500882 MsG0480020499.01.T01:CDS 35.0%
ATGATAGTTCTTAGACCAGT+AGG - Chr4:42501424-42501443 None:intergenic 35.0%
CAAACATTACCCAATGGAAT+AGG + Chr4:42501679-42501698 MsG0480020499.01.T01:CDS 35.0%
CGTTGTCAGTATTTGTGAAA+TGG + Chr4:42500813-42500832 MsG0480020499.01.T01:intron 35.0%
CTGAATGCTAATATCTACCA+AGG - Chr4:42501189-42501208 None:intergenic 35.0%
GAAGTTTAGAAGCCTTGATT+TGG + Chr4:42500567-42500586 MsG0480020499.01.T01:CDS 35.0%
GATAACTCCATTGAAGATGT+GGG + Chr4:42500444-42500463 MsG0480020499.01.T01:CDS 35.0%
GCAAAATGTCATCTTCTTTG+TGG - Chr4:42501011-42501030 None:intergenic 35.0%
TAAACTTCTCCTGGTGAATT+GGG - Chr4:42500555-42500574 None:intergenic 35.0%
TATCCAAAATTGGTGGAGAT+TGG + Chr4:42500862-42500881 MsG0480020499.01.T01:CDS 35.0%
TCAACGACTTTAGATTAGAG+AGG - Chr4:42501847-42501866 None:intergenic 35.0%
TGAAGTTTGCACACTGAATT+AGG - Chr4:42501619-42501638 None:intergenic 35.0%
TGATAACTCCATTGAAGATG+TGG + Chr4:42500443-42500462 MsG0480020499.01.T01:CDS 35.0%
TTAGGAATACTCACAAGTTG+TGG - Chr4:42502021-42502040 None:intergenic 35.0%
TTGAAAGTCCTTTCCAAAGA+AGG - Chr4:42501097-42501116 None:intergenic 35.0%
TTGATAAGGTTGCTGCTAAT+AGG + Chr4:42500316-42500335 MsG0480020499.01.T01:intron 35.0%
TTGTGACAATCTGAATACCT+TGG + Chr4:42501807-42501826 MsG0480020499.01.T01:CDS 35.0%
TTTGTTTGCTTCTCCTTCTT+TGG + Chr4:42501081-42501100 MsG0480020499.01.T01:intron 35.0%
! AGCAACTTCAGCTTTAACTT+CGG - Chr4:42501982-42502001 None:intergenic 35.0%
! TACCAAGGTTTTACTCTGTT+TGG - Chr4:42501174-42501193 None:intergenic 35.0%
!! CAAGATTTTGAAGACTTTGG+TGG + Chr4:42501242-42501261 MsG0480020499.01.T01:intron 35.0%
!! GTCACTAAGACTTTTTCCTT+CGG - Chr4:42500716-42500735 None:intergenic 35.0%
!! GTTGATGATTTGCTTTCGTA+AGG - Chr4:42500192-42500211 None:intergenic 35.0%
!! TACATTTTGAAAGGTCTCTC+GGG + Chr4:42500782-42500801 MsG0480020499.01.T01:intron 35.0%
!! TCTTGAACATTTTGGCATCA+AGG + Chr4:42501472-42501491 MsG0480020499.01.T01:CDS 35.0%
!! TGTGAAATGGGCTTTAAAGA+GGG + Chr4:42500826-42500845 MsG0480020499.01.T01:CDS 35.0%
!! TTGTGAAATGGGCTTTAAAG+AGG + Chr4:42500825-42500844 MsG0480020499.01.T01:CDS 35.0%
!!! AGAAGCTTTTTCAACAGCAA+CGG - Chr4:42499988-42500007 None:intergenic 35.0%
ACTCATCAAAGCAGTGTTGT+TGG + Chr4:42500058-42500077 MsG0480020499.01.T01:CDS 40.0%
AGAACTCCCCAATGTTCTAA+GGG - Chr4:42500925-42500944 None:intergenic 40.0%
AGTTTGCACACTGAATTAGG+AGG - Chr4:42501616-42501635 None:intergenic 40.0%
ATCAAGGTGCAAATTCTTGC+GGG + Chr4:42501488-42501507 MsG0480020499.01.T01:CDS 40.0%
ATGGCTGAAACAGATTAAGC+GGG + Chr4:42500121-42500140 MsG0480020499.01.T01:CDS 40.0%
CACGATCTTGCATTGTATGT+TGG + Chr4:42501296-42501315 MsG0480020499.01.T01:intron 40.0%
CACTAACACTAGCTGAATTG+AGG - Chr4:42500516-42500535 None:intergenic 40.0%
CACTCAATTGCCGAAATGAT+GGG + Chr4:42500746-42500765 MsG0480020499.01.T01:intron 40.0%
CATCAAGGTGCAAATTCTTG+CGG + Chr4:42501487-42501506 MsG0480020499.01.T01:CDS 40.0%
CATCTGAGAAATGAGATTGC+TGG + Chr4:42500604-42500623 MsG0480020499.01.T01:CDS 40.0%
CTAAACTTCTCCTGGTGAAT+TGG - Chr4:42500556-42500575 None:intergenic 40.0%
CTCAATTCAGCTAGTGTTAG+TGG + Chr4:42500514-42500533 MsG0480020499.01.T01:CDS 40.0%
GAAAAAGCTTCTCGAGTGTT+CGG + Chr4:42499996-42500015 MsG0480020499.01.T01:CDS 40.0%
GCTGCTAATAGGCATAAGTT+TGG + Chr4:42500327-42500346 MsG0480020499.01.T01:intron 40.0%
GTGAGTGATTCTGATGTGAT+AGG + Chr4:42500411-42500430 MsG0480020499.01.T01:intron 40.0%
GTTCAAGAAAGCTTCATCGT+TGG - Chr4:42501460-42501479 None:intergenic 40.0%
GTTCTTAGACCAGTAGGAAT+TGG - Chr4:42501418-42501437 None:intergenic 40.0%
TAGGAAATTTGATCAGCCTC+CGG + Chr4:42501698-42501717 MsG0480020499.01.T01:CDS 40.0%
TAGTTATAAATAGCTGCCGG+AGG - Chr4:42501717-42501736 None:intergenic 40.0%
TCATGTTCATGTGTTATGGG+AGG + Chr4:42501128-42501147 MsG0480020499.01.T01:intron 40.0%
TGAGGAAGCGAAAGCAATTT+CGG - Chr4:42502168-42502187 None:intergenic 40.0%
TTATTTACGAGATACCAGCC+TGG + Chr4:42502243-42502262 MsG0480020499.01.T01:CDS 40.0%
TTCAGTTTCTGCATGAGCTT+TGG + Chr4:42501204-42501223 MsG0480020499.01.T01:intron 40.0%
TTTGTAGCTGCTCCAAATCA+AGG - Chr4:42500582-42500601 None:intergenic 40.0%
! GCAACTTCAGCTTTAACTTC+GGG - Chr4:42501981-42502000 None:intergenic 40.0%
! GGTTTTACTCTGTTTGGTTG+TGG - Chr4:42501168-42501187 None:intergenic 40.0%
! TGTATTGGTGCCCATCATTT+CGG - Chr4:42500759-42500778 None:intergenic 40.0%
! TTCCCAATCTCCACCAATTT+TGG - Chr4:42500868-42500887 None:intergenic 40.0%
! TTGCTTCTCCTTCTTTGGAA+AGG + Chr4:42501086-42501105 MsG0480020499.01.T01:intron 40.0%
!! ACAAGAGTTGATAACCACTC+AGG - Chr4:42502114-42502133 None:intergenic 40.0%
!! CTGCACACTTTGAAACTCAA+TGG + Chr4:42501643-42501662 MsG0480020499.01.T01:CDS 40.0%
!! TGAATACCTTGGTGCTTGAA+GGG + Chr4:42501818-42501837 MsG0480020499.01.T01:intron 40.0%
AAAATGTGGAGGGCTTCCTT+TGG + Chr4:42500899-42500918 MsG0480020499.01.T01:intron 45.0%
ACACACACCCACATCTTCAA+TGG - Chr4:42500454-42500473 None:intergenic 45.0%
ACACTTCAGGTAGCATGAGA+AGG + Chr4:42500210-42500229 MsG0480020499.01.T01:CDS 45.0%
AGAACCATGAGCTACGTGAA+TGG + Chr4:42500102-42500121 MsG0480020499.01.T01:CDS 45.0%
ATCTTGATGAGCTTCCTGAG+TGG + Chr4:42502097-42502116 MsG0480020499.01.T01:CDS 45.0%
ATGGCAGAATCACTCCTCTT+CGG + Chr4:42499930-42499949 MsG0480020499.01.T01:CDS 45.0%
CAAGGCTTCTAAACTTCTCC+TGG - Chr4:42500564-42500583 None:intergenic 45.0%
CCACTCAATTGCCGAAATGA+TGG + Chr4:42500745-42500764 MsG0480020499.01.T01:intron 45.0%
CCATCATTTCGGCAATTGAG+TGG - Chr4:42500748-42500767 None:intergenic 45.0%
CCTTTGGCCCTTAGAACATT+GGG + Chr4:42500915-42500934 MsG0480020499.01.T01:intron 45.0%
CTTTGGCCCTTAGAACATTG+GGG + Chr4:42500916-42500935 MsG0480020499.01.T01:intron 45.0%
GAACCAGGATCGTGTCAAAT+GGG + Chr4:42500660-42500679 MsG0480020499.01.T01:CDS 45.0%
GAGAACTCCCCAATGTTCTA+AGG - Chr4:42500926-42500945 None:intergenic 45.0%
GAGAATTTGCCCTGCTCTAT+TGG + Chr4:42501537-42501556 MsG0480020499.01.T01:intron 45.0%
GCACATCCTTGCAACCATTT+AGG - Chr4:42502039-42502058 None:intergenic 45.0%
TCCTTTGGCCCTTAGAACAT+TGG + Chr4:42500914-42500933 MsG0480020499.01.T01:intron 45.0%
TGCCAACGTGAGTAATGTGT+CGG - Chr4:42502061-42502080 None:intergenic 45.0%
TGCTTGTCTTGGACGATGTA+TGG + Chr4:42500638-42500657 MsG0480020499.01.T01:CDS 45.0%
TGGACGCTGAACAAAAGCAA+TGG + Chr4:42500078-42500097 MsG0480020499.01.T01:CDS 45.0%
TTCAGGTAGCATGAGAAGGA+AGG + Chr4:42500214-42500233 MsG0480020499.01.T01:CDS 45.0%
TTCTCCTGGTGAATTGGGTT+AGG - Chr4:42500550-42500569 None:intergenic 45.0%
TTTGAAAGGTCTCTCGGGAA+AGG + Chr4:42500787-42500806 MsG0480020499.01.T01:intron 45.0%
! GACCAGTAGGAATTGGTGTT+TGG - Chr4:42501411-42501430 None:intergenic 45.0%
! TTGCGGGTTTTACAGTTAGC+TGG + Chr4:42501504-42501523 MsG0480020499.01.T01:CDS 45.0%
!! CTGAATACCTTGGTGCTTGA+AGG + Chr4:42501817-42501836 MsG0480020499.01.T01:intron 45.0%
!! TTAATACAAGTCGGTGCCGA+AGG + Chr4:42500697-42500716 MsG0480020499.01.T01:CDS 45.0%
AGAATCACTCCTCTTCGGTG+TGG + Chr4:42499935-42499954 MsG0480020499.01.T01:CDS 50.0%
AGGTATCCCTTCAAGCACCA+AGG - Chr4:42501827-42501846 None:intergenic 50.0%
CAACCCATTTGACACGATCC+TGG - Chr4:42500666-42500685 None:intergenic 50.0%
CTTGGACGATGTATGGAACC+AGG + Chr4:42500645-42500664 MsG0480020499.01.T01:CDS 50.0%
GGAACCAGGATCGTGTCAAA+TGG + Chr4:42500659-42500678 MsG0480020499.01.T01:CDS 50.0%
GGAAGGCAATGTGTGTCTTG+AGG - Chr4:42502186-42502205 None:intergenic 50.0%
GGCCAAACACCAATTCCTAC+TGG + Chr4:42501406-42501425 MsG0480020499.01.T01:CDS 50.0%
GGTGTGGCAGAGTCATTCAT+TGG + Chr4:42499951-42499970 MsG0480020499.01.T01:CDS 50.0%
TCAGCCATTCACGTAGCTCA+TGG - Chr4:42500109-42500128 None:intergenic 50.0%
TGCCGACACATTACTCACGT+TGG + Chr4:42502056-42502075 MsG0480020499.01.T01:CDS 50.0%
TGCTCCTAACCCAATTCACC+AGG + Chr4:42500543-42500562 MsG0480020499.01.T01:CDS 50.0%
!! CATGTGTTATGGGAGGCACT+TGG + Chr4:42501135-42501154 MsG0480020499.01.T01:intron 50.0%
!! CCCAATGTTCTAAGGGCCAA+AGG - Chr4:42500918-42500937 None:intergenic 50.0%
AATCATGTCCGACTCCAGGC+TGG - Chr4:42502260-42502279 None:intergenic 55.0%
ACGAGATACCAGCCTGGAGT+CGG + Chr4:42502249-42502268 MsG0480020499.01.T01:CDS 55.0%
AGCCTGGAGTCGGACATGAT+TGG + Chr4:42502259-42502278 MsG0480020499.01.T01:CDS 55.0%
ATGACTCTGCCACACCGAAG+AGG - Chr4:42499947-42499966 None:intergenic 55.0%
TGCCAATCATGTCCGACTCC+AGG - Chr4:42502264-42502283 None:intergenic 55.0%
!! GCTTCATCGTTGGCTCCCTT+AGG - Chr4:42501450-42501469 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
Chr4 gene 42499930 42502335 42499930 ID=MsG0480020499.01;Name=MsG0480020499.01
Chr4 mRNA 42499930 42502335 42499930 ID=MsG0480020499.01.T01;Parent=MsG0480020499.01;Name=MsG0480020499.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|6|0|475
Chr4 exon 42499930 42500235 42499930 ID=MsG0480020499.01.T01:exon:4505;Parent=MsG0480020499.01.T01
Chr4 exon 42500433 42500740 42500433 ID=MsG0480020499.01.T01:exon:4506;Parent=MsG0480020499.01.T01
Chr4 exon 42500822 42500903 42500822 ID=MsG0480020499.01.T01:exon:4507;Parent=MsG0480020499.01.T01
Chr4 exon 42501366 42501525 42501366 ID=MsG0480020499.01.T01:exon:4508;Parent=MsG0480020499.01.T01
Chr4 exon 42501626 42501828 42501626 ID=MsG0480020499.01.T01:exon:4509;Parent=MsG0480020499.01.T01
Chr4 exon 42501967 42502335 42501967 ID=MsG0480020499.01.T01:exon:4510;Parent=MsG0480020499.01.T01
Chr4 CDS 42499930 42500235 42499930 ID=MsG0480020499.01.T01:cds;Parent=MsG0480020499.01.T01
Chr4 CDS 42500433 42500740 42500433 ID=MsG0480020499.01.T01:cds;Parent=MsG0480020499.01.T01
Chr4 CDS 42500822 42500903 42500822 ID=MsG0480020499.01.T01:cds;Parent=MsG0480020499.01.T01
Chr4 CDS 42501366 42501525 42501366 ID=MsG0480020499.01.T01:cds;Parent=MsG0480020499.01.T01
Chr4 CDS 42501626 42501828 42501626 ID=MsG0480020499.01.T01:cds;Parent=MsG0480020499.01.T01
Chr4 CDS 42501967 42502335 42501967 ID=MsG0480020499.01.T01:cds;Parent=MsG0480020499.01.T01
Gene Sequence

>MsG0480020499.01.T01

ATGGCAGAATCACTCCTCTTCGGTGTGGCAGAGTCATTCATTGGAAAACTTGCATCCGTTGCTGTTGAAAAAGCTTCTCGAGTGTTCGGTGTCTACGATGATCTTCAAGAAATCAAAAACACTGTCTCACTCATCAAAGCAGTGTTGTTGGACGCTGAACAAAAGCAATGGCAGAACCATGAGCTACGTGAATGGCTGAAACAGATTAAGCGGGTCTTCTACGATGCTGAAGATGTAATCGATGATTTCGAATGTGAGGCCTTACGAAAGCAAATCATCAACACTTCAGGTAGCATGAGAAGGAAGGAAGACAACATGATAACTCCATTGAAGATGTGGGTGTGTGTCTCTGATGATTTTGAACTTGCAAATCTGCTTGTCAAAATCCTCAATTCAGCTAGTGTTAGTGGTTCTGTTGCTCCTAACCCAATTCACCAGGAGAAGTTTAGAAGCCTTGATTTGGAGCAGCTACAAAATCATCTGAGAAATGAGATTGCTGGTAAAAAGTTCTTGCTTGTCTTGGACGATGTATGGAACCAGGATCGTGTCAAATGGGTTGAGTTGAAGAATTTAATACAAGTCGGTGCCGAAGGAAAAAGTCTTAGTGACTACACTATTTGTGAAATGGGCTTTAAAGAGGGAGAAGAGAAAAAATATCCAAAATTGGTGGAGATTGGGAAAGAATTGTACAAAAATAGAATGTTCTTCATCTGTCATTTATTGAAAATGATTGCTTGGCCAAACACCAATTCCTACTGGTCTAAGAACTATCATATTCCTAAGGGAGCCAACGATGAAGCTTTCTTGAACATTTTGGCATCAAGGTGCAAATTCTTGCGGGTTTTACAGTTAGCTGTGTGCAAACTTCAGAATCTGCACACTTTGAAACTCAATGGATGCATAAAACTTCAAACATTACCCAATGGAATAGGAAATTTGATCAGCCTCCGGCAGCTATTTATAACTACAAAACAATTTAATTTTCCAGACAAAGAGATTGCAAAGTTGACATCTTTAGAATTATTAGATGTCCGAGATTGTGACAATCTGAATACCTTGATTAACGATATCCCGAAGTTAAAGCTGAAGTTGCTAAATCTTGTATCTTTGCCACAACTTGTGAGTATTCCTAAATGGTTGCAAGGATGTGCCGACACATTACTCACGTTGGCAATTGTTGACTGTGAAAATCTTGATGAGCTTCCTGAGTGGTTATCAACTCTTGTTTGTCTCAATAGACTTGTTATTCTAAATTGTCCGAAATTGCTTTCGCTTCCTCAAGACACACATTGCCTTCCAAACCTTGAAAATTTATTAATTAGAGGTTGTCCTGAATTATTTACGAGATACCAGCCTGGAGTCGGACATGATTGGCACAAGATATCACACATCAAACAAGTGAAGGTGACTCAGAGAAGTAGAAATTGA

Protein sequence

>MsG0480020499.01.T01

MAESLLFGVAESFIGKLASVAVEKASRVFGVYDDLQEIKNTVSLIKAVLLDAEQKQWQNHELREWLKQIKRVFYDAEDVIDDFECEALRKQIINTSGSMRRKEDNMITPLKMWVCVSDDFELANLLVKILNSASVSGSVAPNPIHQEKFRSLDLEQLQNHLRNEIAGKKFLLVLDDVWNQDRVKWVELKNLIQVGAEGKSLSDYTICEMGFKEGEEKKYPKLVEIGKELYKNRMFFICHLLKMIAWPNTNSYWSKNYHIPKGANDEAFLNILASRCKFLRVLQLAVCKLQNLHTLKLNGCIKLQTLPNGIGNLISLRQLFITTKQFNFPDKEIAKLTSLELLDVRDCDNLNTLINDIPKLKLKLLNLVSLPQLVSIPKWLQGCADTLLTLAIVDCENLDELPEWLSTLVCLNRLVILNCPKLLSLPQDTHCLPNLENLLIRGCPELFTRYQPGVGHDWHKISHIKQVKVTQRSRN*