Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028169.01.T01 | PNX72657.1 | 90.476 | 42 | 4 | 0 | 28 | 69 | 143 | 184 | 7.52E-17 | 90.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028169.01.T01 | P34801 | 69.048 | 42 | 13 | 0 | 28 | 69 | 202 | 243 | 5.77E-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028169.01.T01 | A0A2K3L284 | 90.476 | 42 | 4 | 0 | 28 | 69 | 143 | 184 | 3.59e-17 | 90.1 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047925.01 | MsG0580028169.01 | 0.803874 | 2.830415e-49 | 1.438453e-46 |
| MsG0180002233.01 | MsG0580028169.01 | 0.806570 | 7.714729e-50 | 4.201469e-47 |
| MsG0180002234.01 | MsG0580028169.01 | 0.836591 | 8.554624e-57 | 1.082984e-53 |
| MsG0180002518.01 | MsG0580028169.01 | 0.824042 | 9.999575e-54 | 8.757346e-51 |
| MsG0180004275.01 | MsG0580028169.01 | 0.806628 | 7.499500e-50 | 4.090119e-47 |
| MsG0180006134.01 | MsG0580028169.01 | 0.800074 | 1.708914e-48 | 7.884076e-46 |
| MsG0280006325.01 | MsG0580028169.01 | 0.808203 | 3.476460e-50 | 1.975589e-47 |
| MsG0380013883.01 | MsG0580028169.01 | 0.802987 | 4.321679e-49 | 2.146704e-46 |
| MsG0380014894.01 | MsG0580028169.01 | 0.811278 | 7.582308e-51 | 4.673552e-48 |
| MsG0480018664.01 | MsG0580028169.01 | 0.827032 | 1.957228e-54 | 1.867168e-51 |
| MsG0480021587.01 | MsG0580028169.01 | 0.845459 | 4.008381e-59 | 6.684297e-56 |
| MsG0380014977.01 | MsG0580028169.01 | 0.801748 | 7.776441e-49 | 3.742870e-46 |
| MsG0380015034.01 | MsG0580028169.01 | 0.804070 | 2.576806e-49 | 1.316181e-46 |
| MsG0380015038.01 | MsG0580028169.01 | 0.805770 | 1.136979e-49 | 6.067028e-47 |
| MsG0380016274.01 | MsG0580028169.01 | 0.804821 | 1.797102e-49 | 9.358628e-47 |
| MsG0380017220.01 | MsG0580028169.01 | 0.805536 | 1.273314e-49 | 6.753282e-47 |
| MsG0380017312.01 | MsG0580028169.01 | 0.810195 | 1.300445e-50 | 7.788655e-48 |
| MsG0380017855.01 | MsG0580028169.01 | 0.808947 | 2.410698e-50 | 1.396899e-47 |
| MsG0480018121.01 | MsG0580028169.01 | 0.814459 | 1.524426e-51 | 1.023461e-48 |
| MsG0580026222.01 | MsG0580028169.01 | 0.821839 | 3.260986e-53 | 2.683340e-50 |
| MsG0580026434.01 | MsG0580028169.01 | 0.810323 | 1.220369e-50 | 7.333760e-48 |
| MsG0580026613.01 | MsG0580028169.01 | 0.807087 | 5.999009e-50 | 3.310887e-47 |
| MsG0580026631.01 | MsG0580028169.01 | 0.814181 | 1.755888e-51 | 1.169993e-48 |
| MsG0580027018.01 | MsG0580028169.01 | 0.814575 | 1.436834e-51 | 9.676892e-49 |
| MsG0580028169.01 | MsG0580028170.01 | 0.962687 | 3.554810e-121 | 1.806172e-115 |
| MsG0580028169.01 | MsG0580028171.01 | 0.932679 | 5.924076e-95 | 4.025496e-90 |
| MsG0580028169.01 | MsG0580028173.01 | 0.823263 | 1.522040e-53 | 1.304014e-50 |
| MsG0580028169.01 | MsG0580028692.01 | 0.820557 | 6.441566e-53 | 5.113641e-50 |
| MsG0580028169.01 | MsG0580029381.01 | 0.824057 | 9.917269e-54 | 8.689171e-51 |
| MsG0580028169.01 | MsG0680032157.01 | 0.802655 | 5.059774e-49 | 2.492212e-46 |
| MsG0580028169.01 | MsG0680032158.01 | 0.831570 | 1.549039e-55 | 1.687719e-52 |
| MsG0580028169.01 | MsG0680033466.01 | 0.801875 | 7.325452e-49 | 3.537440e-46 |
| MsG0580028169.01 | MsG0680033647.01 | 0.807449 | 5.028169e-50 | 2.801437e-47 |
| MsG0580028169.01 | MsG0780036080.01 | 0.804933 | 1.702889e-49 | 8.893630e-47 |
| MsG0580028169.01 | MsG0780036201.01 | 0.827111 | 1.873674e-54 | 1.791609e-51 |
| MsG0580028169.01 | MsG0780036612.01 | 0.810580 | 1.074153e-50 | 6.499339e-48 |
| MsG0580028169.01 | MsG0780037606.01 | 0.825010 | 5.917052e-54 | 5.328464e-51 |
| MsG0580028169.01 | MsG0780039282.01 | 0.804608 | 1.990756e-49 | 1.030943e-46 |
| MsG0580028169.01 | MsG0880044644.01 | 0.814744 | 1.317887e-51 | 8.916203e-49 |
| MsG0280006551.01 | MsG0580028169.01 | 0.813821 | 2.107616e-51 | 1.390738e-48 |
| MsG0280009248.01 | MsG0580028169.01 | 0.805954 | 1.040408e-49 | 5.577825e-47 |
| MsG0280010117.01 | MsG0580028169.01 | 0.823919 | 1.068723e-53 | 9.328210e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028169.01.T01 | MTR_5g088980 | 88.095 | 42 | 5 | 0 | 28 | 69 | 178 | 219 | 3.26e-20 | 89.0 |
| MsG0580028169.01.T01 | MTR_3g050860 | 76.923 | 52 | 12 | 0 | 98 | 149 | 187 | 238 | 1.50e-15 | 75.1 |
| MsG0580028169.01.T01 | MTR_4g074930 | 68.085 | 94 | 24 | 2 | 97 | 187 | 121 | 211 | 2.88e-14 | 72.0 |
| MsG0580028169.01.T01 | MTR_4g074930 | 68.085 | 94 | 24 | 2 | 97 | 187 | 121 | 211 | 3.02e-14 | 72.0 |
| MsG0580028169.01.T01 | MTR_4g074930 | 68.085 | 94 | 24 | 2 | 97 | 187 | 156 | 246 | 3.49e-14 | 72.0 |
| MsG0580028169.01.T01 | MTR_4g074930 | 62.366 | 93 | 30 | 3 | 97 | 186 | 121 | 211 | 4.88e-12 | 65.5 |
| MsG0580028169.01.T01 | MTR_4g074930 | 68.085 | 94 | 24 | 2 | 97 | 187 | 156 | 246 | 3.68e-14 | 71.6 |
| MsG0580028169.01.T01 | MTR_4g074930 | 62.366 | 93 | 30 | 3 | 97 | 186 | 121 | 211 | 4.87e-12 | 65.5 |
| MsG0580028169.01.T01 | MTR_5g029260 | 71.739 | 46 | 13 | 0 | 193 | 238 | 69 | 114 | 4.62e-12 | 64.7 |
| MsG0580028169.01.T01 | MTR_7g089080 | 64.286 | 42 | 15 | 0 | 28 | 69 | 212 | 253 | 2.42e-11 | 63.5 |
| MsG0580028169.01.T01 | MTR_1g067150 | 78.788 | 33 | 7 | 0 | 69 | 101 | 79 | 111 | 4.69e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028169.01.T01 | AT2G26760 | 71.053 | 38 | 11 | 0 | 32 | 69 | 147 | 184 | 1.13e-12 | 67.0 |
Find 46 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATGTAAATGCTAACTTTA+AGG | 0.110035 | 5:-76067141 | MsG0580028169.01.T01:CDS |
| TTCTACAATGGCAGGGTATT+GGG | 0.296126 | 5:-76067185 | MsG0580028169.01.T01:CDS |
| CTCATCTTAGCATTTATATC+TGG | 0.296448 | 5:+76067269 | None:intergenic |
| GAAGTATCAGCTTTCTTTGC+CGG | 0.302508 | 5:+76066909 | None:intergenic |
| TTTCTACAATGGCAGGGTAT+TGG | 0.338064 | 5:-76067186 | MsG0580028169.01.T01:CDS |
| GCACTATCAGCTTTCTTTGC+GGG | 0.352953 | 5:+76066688 | None:intergenic |
| TATGTAAATGCTAACTTTAA+GGG | 0.364959 | 5:-76067140 | MsG0580028169.01.T01:CDS |
| AGAAGCCATACTGCTGCCTT+TGG | 0.370792 | 5:+76067533 | None:intergenic |
| TTGGGAGGCAATGGGTTTGT+TGG | 0.385926 | 5:-76065999 | MsG0580028169.01.T01:CDS |
| TGATATGTAGATTGTAGTCT+TGG | 0.387607 | 5:-76066018 | MsG0580028169.01.T01:intron |
| TCATTTGAAGCTTTCTTTGT+GGG | 0.390405 | 5:+76066458 | None:intergenic |
| TAGAAATCATAAGCTTAAAC+AGG | 0.401284 | 5:-76065941 | MsG0580028169.01.T01:CDS |
| TTCATTTGAAGCTTTCTTTG+TGG | 0.401537 | 5:+76066457 | None:intergenic |
| GTTCTACTTACTCAGATTCA+TGG | 0.416229 | 5:-76065814 | MsG0580028169.01.T01:CDS |
| GCTTATGATTTCTATGCCCT+TGG | 0.419174 | 5:+76065950 | None:intergenic |
| CGGAAAATTTCTACAATGGC+AGG | 0.420430 | 5:-76067193 | MsG0580028169.01.T01:CDS |
| GGCTCAGAAACTTGCAGCAA+AGG | 0.449435 | 5:-76066501 | MsG0580028169.01.T01:intron |
| ATTGTAGTCTTGGGAGGCAA+TGG | 0.455853 | 5:-76066008 | MsG0580028169.01.T01:CDS |
| CTCTTCCAAAGGCAGCAGTA+TGG | 0.458219 | 5:-76067538 | MsG0580028169.01.T01:CDS |
| AAAGGCAGCAGTATGGCTTC+TGG | 0.465155 | 5:-76067531 | MsG0580028169.01.T01:CDS |
| GATGGAACAACTTTAGCTGC+AGG | 0.471970 | 5:+76066948 | None:intergenic |
| ATGAGATCAATTCTTATTGA+CGG | 0.472397 | 5:-76067251 | MsG0580028169.01.T01:CDS |
| TTACTTACATTGGGAAACAT+AGG | 0.475384 | 5:+76067113 | None:intergenic |
| TGAGATCAATTCTTATTGAC+GGG | 0.486231 | 5:-76067250 | MsG0580028169.01.T01:CDS |
| TAGGAAATTTGAACTTATGC+CGG | 0.494203 | 5:-76067213 | MsG0580028169.01.T01:CDS |
| GATATGTAGATTGTAGTCTT+GGG | 0.505411 | 5:-76066017 | MsG0580028169.01.T01:intron |
| TTGTAGTCTTGGGAGGCAAT+GGG | 0.505552 | 5:-76066007 | MsG0580028169.01.T01:CDS |
| GAGCCATTGTATTGTTCTTG+AGG | 0.531342 | 5:+76067558 | None:intergenic |
| AGCACTATCAGCTTTCTTTG+CGG | 0.535090 | 5:+76066687 | None:intergenic |
| TGTTCGTGTGCATGATTACA+TGG | 0.536076 | 5:-76067300 | MsG0580028169.01.T01:CDS |
| CTCAGATTCATGGATAGTGT+TGG | 0.544028 | 5:-76065804 | MsG0580028169.01.T01:CDS |
| TGTTGGTTCTGCTATATGCA+AGG | 0.547176 | 5:-76065982 | MsG0580028169.01.T01:CDS |
| ATCTTCTAACGAAGAAGATA+AGG | 0.547986 | 5:-76066635 | MsG0580028169.01.T01:intron |
| ATGCAAGGCAGCAGTATCCA+AGG | 0.548782 | 5:-76065967 | MsG0580028169.01.T01:CDS |
| TGATTTACAACTAAATGAAG+TGG | 0.551226 | 5:+76067495 | None:intergenic |
| CAATACAATGGCTCTTCCAA+AGG | 0.576376 | 5:-76067549 | MsG0580028169.01.T01:CDS |
| ATGCCGGAAAATTTCTACAA+TGG | 0.584945 | 5:-76067197 | MsG0580028169.01.T01:CDS |
| GGATAGTGTTGGTACTACAT+AGG | 0.596128 | 5:-76065793 | None:intergenic |
| ACGGGTTGATCGAAGTGCAT+AGG | 0.604673 | 5:-76067232 | MsG0580028169.01.T01:CDS |
| AGATTCATCAGAGTCGTCAT+CGG | 0.622764 | 5:+76066654 | None:intergenic |
| ATGTAGATTGTAGTCTTGGG+AGG | 0.624281 | 5:-76066014 | MsG0580028169.01.T01:intron |
| GGAAAATTTCTACAATGGCA+GGG | 0.630591 | 5:-76067192 | MsG0580028169.01.T01:CDS |
| TGAATCTTCTGATGAAGATG+AGG | 0.644258 | 5:-76066871 | MsG0580028169.01.T01:intron |
| ACTAAATGAAGTGGACTCTG+TGG | 0.651058 | 5:+76067504 | None:intergenic |
| TGCAAGGCAGCAGTATCCAA+GGG | 0.655279 | 5:-76065966 | MsG0580028169.01.T01:CDS |
| ATGCCTCAAGAACAATACAA+TGG | 0.701209 | 5:-76067561 | MsG0580028169.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATACAATGATATAAAATTA+AGG | + | Chr5:76066548-76066567 | None:intergenic | 10.0% |
| !! | ATACAATGATATAAAATTAA+GGG | + | Chr5:76066547-76066566 | None:intergenic | 10.0% |
| !!! | CTTTATTTTGTTTTTTAAAA+TGG | - | Chr5:76066806-76066825 | MsG0580028169.01.T01:intron | 10.0% |
| !!! | TAAATATATATTTTTTCCTT+TGG | - | Chr5:76066833-76066852 | MsG0580028169.01.T01:intron | 10.0% |
| !!! | TTGTTTTAATTTTTTTTTCA+TGG | - | Chr5:76066597-76066616 | MsG0580028169.01.T01:intron | 10.0% |
| !! | AATAAACAAAACAAAAAGTT+GGG | + | Chr5:76066341-76066360 | None:intergenic | 15.0% |
| !! | TAATAAACAAAACAAAAAGT+TGG | + | Chr5:76066342-76066361 | None:intergenic | 15.0% |
| !! | TATATAGTGAATTAATTGAT+AGG | - | Chr5:76067200-76067219 | MsG0580028169.01.T01:CDS | 15.0% |
| !!! | ATGTTTTAGCTATAAATTAA+AGG | + | Chr5:76066312-76066331 | None:intergenic | 15.0% |
| !! | AGAATAAAAGGATAATGAAT+TGG | - | Chr5:76065884-76065903 | MsG0580028169.01.T01:intron | 20.0% |
| !! | ATATGTAAATGCTAACTTTA+AGG | - | Chr5:76066214-76066233 | MsG0580028169.01.T01:intron | 20.0% |
| !! | ATGTAATCAAATCATATGAA+AGG | + | Chr5:76066949-76066968 | None:intergenic | 20.0% |
| !! | CAATTCTAATTACTTACATT+GGG | + | Chr5:76066254-76066273 | None:intergenic | 20.0% |
| !! | GTTGTAAATCATAGAATAAA+AGG | - | Chr5:76065872-76065891 | MsG0580028169.01.T01:intron | 20.0% |
| !! | TATGTAAATGCTAACTTTAA+GGG | - | Chr5:76066215-76066234 | MsG0580028169.01.T01:intron | 20.0% |
| !! | TGTATTTACAACTATTTGTT+TGG | - | Chr5:76066562-76066581 | MsG0580028169.01.T01:intron | 20.0% |
| !! | TTTAAATATTACTGTTCTTG+TGG | + | Chr5:76066976-76066995 | None:intergenic | 20.0% |
| ! | AAAGTTGTTCCATCTAAAAA+TGG | - | Chr5:76066416-76066435 | MsG0580028169.01.T01:intron | 25.0% |
| ! | AAGTTGTTCCATCTAAAAAT+GGG | - | Chr5:76066417-76066436 | MsG0580028169.01.T01:intron | 25.0% |
| ! | ATGAGATCAATTCTTATTGA+CGG | - | Chr5:76066104-76066123 | MsG0580028169.01.T01:intron | 25.0% |
| ! | CAAATACACAAAAACAAAAG+AGG | + | Chr5:76067493-76067512 | None:intergenic | 25.0% |
| ! | GCAATTCTAATTACTTACAT+TGG | + | Chr5:76066255-76066274 | None:intergenic | 25.0% |
| ! | GTGTTACAATTTAGTTAGTA+AGG | + | Chr5:76067303-76067322 | None:intergenic | 25.0% |
| ! | TAGAAATCATAAGCTTAAAC+AGG | - | Chr5:76067414-76067433 | MsG0580028169.01.T01:intron | 25.0% |
| ! | TGATTTACAACTAAATGAAG+TGG | + | Chr5:76065863-76065882 | None:intergenic | 25.0% |
| !!! | AATTAAAGGTATCATGATGA+TGG | + | Chr5:76066298-76066317 | None:intergenic | 25.0% |
| !!! | ACTCACTTACATGTTTTTTA+TGG | - | Chr5:76066376-76066395 | MsG0580028169.01.T01:intron | 25.0% |
| !!! | ATGCTACCTTTCTTTTTTTT+TGG | - | Chr5:76067006-76067025 | MsG0580028169.01.T01:intron | 25.0% |
| AAAGTTGTTCCTTCCAAAAA+TGG | - | Chr5:76066637-76066656 | MsG0580028169.01.T01:CDS | 30.0% | |
| AACATGTAAGTGAGTTATAG+AGG | + | Chr5:76066371-76066390 | None:intergenic | 30.0% | |
| AAGTTGTTCCTTCCAAAAAT+GGG | - | Chr5:76066638-76066657 | MsG0580028169.01.T01:CDS | 30.0% | |
| ACATGTAAGTGAGTTATAGA+GGG | + | Chr5:76066370-76066389 | None:intergenic | 30.0% | |
| ATCTTCTAACGAAGAAGATA+AGG | - | Chr5:76066720-76066739 | MsG0580028169.01.T01:CDS | 30.0% | |
| CATAAAATATGCAAGGTTCA+GGG | + | Chr5:76067050-76067069 | None:intergenic | 30.0% | |
| CCACTACCAAAAAAAAAGAA+AGG | + | Chr5:76067015-76067034 | None:intergenic | 30.0% | |
| CTCATCTTAGCATTTATATC+TGG | + | Chr5:76066089-76066108 | None:intergenic | 30.0% | |
| GACAATGCATAAAATATGCA+AGG | + | Chr5:76067057-76067076 | None:intergenic | 30.0% | |
| GATATGTAGATTGTAGTCTT+GGG | - | Chr5:76067338-76067357 | MsG0580028169.01.T01:intron | 30.0% | |
| TAACGAAGAAGATAAGGTAT+TGG | - | Chr5:76066726-76066745 | MsG0580028169.01.T01:CDS | 30.0% | |
| TAGGAAATTTGAACTTATGC+CGG | - | Chr5:76066142-76066161 | MsG0580028169.01.T01:intron | 30.0% | |
| TGAGATCAATTCTTATTGAC+GGG | - | Chr5:76066105-76066124 | MsG0580028169.01.T01:intron | 30.0% | |
| TGATATGTAGATTGTAGTCT+TGG | - | Chr5:76067337-76067356 | MsG0580028169.01.T01:intron | 30.0% | |
| TTACTTACATTGGGAAACAT+AGG | + | Chr5:76066245-76066264 | None:intergenic | 30.0% | |
| ! | TCATTTGAAGCTTTCTTTGT+GGG | + | Chr5:76066900-76066919 | None:intergenic | 30.0% |
| ! | TTCATTTGAAGCTTTCTTTG+TGG | + | Chr5:76066901-76066920 | None:intergenic | 30.0% |
| !! | TGACTGAGATTTTGTTTAAC+AGG | - | Chr5:76067511-76067530 | MsG0580028169.01.T01:CDS | 30.0% |
| !!! | CCTTTCTTTTTTTTTGGTAG+TGG | - | Chr5:76067012-76067031 | MsG0580028169.01.T01:intron | 30.0% |
| ACACAAAAACAAAAGAGGTG+TGG | + | Chr5:76067488-76067507 | None:intergenic | 35.0% | |
| ATGCCGGAAAATTTCTACAA+TGG | - | Chr5:76066158-76066177 | MsG0580028169.01.T01:intron | 35.0% | |
| ATGCCTCAAGAACAATACAA+TGG | - | Chr5:76065794-76065813 | MsG0580028169.01.T01:CDS | 35.0% | |
| CTTCTAACCTTCTAGTAGAA+AGG | + | Chr5:76067117-76067136 | None:intergenic | 35.0% | |
| GCATAAAATATGCAAGGTTC+AGG | + | Chr5:76067051-76067070 | None:intergenic | 35.0% | |
| GGAAAATTTCTACAATGGCA+GGG | - | Chr5:76066163-76066182 | MsG0580028169.01.T01:intron | 35.0% | |
| GTTCTACTTACTCAGATTCA+TGG | - | Chr5:76067541-76067560 | MsG0580028169.01.T01:CDS | 35.0% | |
| TATGCTACCTTTCTACTAGA+AGG | - | Chr5:76067107-76067126 | MsG0580028169.01.T01:intron | 35.0% | |
| TGAATCTTCTGATGAAGATG+AGG | - | Chr5:76066484-76066503 | MsG0580028169.01.T01:CDS | 35.0% | |
| ! | CTGCCATTGTAGAAATTTTC+CGG | + | Chr5:76066164-76066183 | None:intergenic | 35.0% |
| !! | GAGATTTTGTTTAACAGGTC+AGG | - | Chr5:76067516-76067535 | MsG0580028169.01.T01:CDS | 35.0% |
| !!! | TCTTTTTTTTTGGTAGTGGC+CGG | - | Chr5:76067016-76067035 | MsG0580028169.01.T01:intron | 35.0% |
| AGATTCATCAGAGTCGTCAT+CGG | + | Chr5:76066704-76066723 | None:intergenic | 40.0% | |
| AGCACTATCAGCTTTCTTTG+CGG | + | Chr5:76066671-76066690 | None:intergenic | 40.0% | |
| CAATACAATGGCTCTTCCAA+AGG | - | Chr5:76065806-76065825 | MsG0580028169.01.T01:CDS | 40.0% | |
| CGGAAAATTTCTACAATGGC+AGG | - | Chr5:76066162-76066181 | MsG0580028169.01.T01:intron | 40.0% | |
| CTCAGATTCATGGATAGTGT+TGG | - | Chr5:76067551-76067570 | MsG0580028169.01.T01:CDS | 40.0% | |
| GAGCCATTGTATTGTTCTTG+AGG | + | Chr5:76065800-76065819 | None:intergenic | 40.0% | |
| GCTTATGATTTCTATGCCCT+TGG | + | Chr5:76067408-76067427 | None:intergenic | 40.0% | |
| TGTTCGTGTGCATGATTACA+TGG | - | Chr5:76066055-76066074 | MsG0580028169.01.T01:intron | 40.0% | |
| TTTCTACAATGGCAGGGTAT+TGG | - | Chr5:76066169-76066188 | MsG0580028169.01.T01:intron | 40.0% | |
| ! | ACTAAATGAAGTGGACTCTG+TGG | + | Chr5:76065854-76065873 | None:intergenic | 40.0% |
| ! | ATCTAAAAATGGGAGTGCAC+CGG | - | Chr5:76066427-76066446 | MsG0580028169.01.T01:intron | 40.0% |
| ! | ATGTAGATTGTAGTCTTGGG+AGG | - | Chr5:76067341-76067360 | MsG0580028169.01.T01:intron | 40.0% |
| ! | CAGCAAAGGCCTCTAAAAAT+GGG | - | Chr5:76066868-76066887 | MsG0580028169.01.T01:intron | 40.0% |
| ! | GAAGTATCAGCTTTCTTTGC+CGG | + | Chr5:76066449-76066468 | None:intergenic | 40.0% |
| ! | TGAGTTTAGCTCAGTTGGTT+GGG | + | Chr5:76067079-76067098 | None:intergenic | 40.0% |
| ! | TTCTACAATGGCAGGGTATT+GGG | - | Chr5:76066170-76066189 | MsG0580028169.01.T01:intron | 40.0% |
| !! | TGTTGGTTCTGCTATATGCA+AGG | - | Chr5:76067373-76067392 | MsG0580028169.01.T01:intron | 40.0% |
| !!! | CTTTTTTTTTGGTAGTGGCC+GGG | - | Chr5:76067017-76067036 | MsG0580028169.01.T01:intron | 40.0% |
| !!! | TTTTTTTTTGGTAGTGGCCG+GGG | - | Chr5:76067018-76067037 | MsG0580028169.01.T01:intron | 40.0% |
| GATGGAACAACTTTAGCTGC+AGG | + | Chr5:76066410-76066429 | None:intergenic | 45.0% | |
| GCACTATCAGCTTTCTTTGC+GGG | + | Chr5:76066670-76066689 | None:intergenic | 45.0% | |
| ! | ATTGTAGTCTTGGGAGGCAA+TGG | - | Chr5:76067347-76067366 | MsG0580028169.01.T01:intron | 45.0% |
| ! | GAAGGAACAACTTTTGCTGC+AGG | + | Chr5:76066631-76066650 | None:intergenic | 45.0% |
| ! | GCAGCAAAGGCCTCTAAAAA+TGG | - | Chr5:76066867-76066886 | MsG0580028169.01.T01:intron | 45.0% |
| ! | GTGAGTTTAGCTCAGTTGGT+TGG | + | Chr5:76067080-76067099 | None:intergenic | 45.0% |
| ! | TTGTAGTCTTGGGAGGCAAT+GGG | - | Chr5:76067348-76067367 | MsG0580028169.01.T01:intron | 45.0% |
| !! | GGTACACTCCCATTTTTGGA+AGG | + | Chr5:76066649-76066668 | None:intergenic | 45.0% |
| !! | GGTGCACTCCCATTTTTAGA+TGG | + | Chr5:76066428-76066447 | None:intergenic | 45.0% |
| AAAGGCAGCAGTATGGCTTC+TGG | - | Chr5:76065824-76065843 | MsG0580028169.01.T01:CDS | 50.0% | |
| AAGGTTCAGGGTTCAAACCC+CGG | + | Chr5:76067038-76067057 | None:intergenic | 50.0% | |
| AGAAGCCATACTGCTGCCTT+TGG | + | Chr5:76065825-76065844 | None:intergenic | 50.0% | |
| AGGTGTGGAAGAGATGAGAC+GGG | + | Chr5:76067473-76067492 | None:intergenic | 50.0% | |
| ATGCAAGGCAGCAGTATCCA+AGG | - | Chr5:76067388-76067407 | MsG0580028169.01.T01:intron | 50.0% | |
| CCAACTGAGCTAAACTCACG+AGG | - | Chr5:76067081-76067100 | MsG0580028169.01.T01:intron | 50.0% | |
| CTCTTCCAAAGGCAGCAGTA+TGG | - | Chr5:76065817-76065836 | MsG0580028169.01.T01:CDS | 50.0% | |
| GAGGTGTGGAAGAGATGAGA+CGG | + | Chr5:76067474-76067493 | None:intergenic | 50.0% | |
| GCTGCAAGTTTCTGAGCCAA+AGG | + | Chr5:76066852-76066871 | None:intergenic | 50.0% | |
| GGCTCAGAAACTTGCAGCAA+AGG | - | Chr5:76066854-76066873 | MsG0580028169.01.T01:intron | 50.0% | |
| TGCAAGGCAGCAGTATCCAA+GGG | - | Chr5:76067389-76067408 | MsG0580028169.01.T01:intron | 50.0% | |
| ! | CCTCGTGAGTTTAGCTCAGT+TGG | + | Chr5:76067084-76067103 | None:intergenic | 50.0% |
| ! | TGCGGGTACACTCCCATTTT+TGG | + | Chr5:76066653-76066672 | None:intergenic | 50.0% |
| ! | TTGGGAGGCAATGGGTTTGT+TGG | - | Chr5:76067356-76067375 | MsG0580028169.01.T01:intron | 50.0% |
| !! | ACGGGTTGATCGAAGTGCAT+AGG | - | Chr5:76066123-76066142 | MsG0580028169.01.T01:intron | 50.0% |
| !! | GGGTGCACTCCCATTTTTAG+AGG | + | Chr5:76066880-76066899 | None:intergenic | 50.0% |
| GGTGTGGAAGAGATGAGACG+GGG | + | Chr5:76067472-76067491 | None:intergenic | 55.0% | |
| GTGTGGAAGAGATGAGACGG+GGG | + | Chr5:76067471-76067490 | None:intergenic | 55.0% | |
| ! | AGAGATGAGACGGGGGTATG+TGG | + | Chr5:76067464-76067483 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 76065794 | 76067583 | 76065794 | ID=MsG0580028169.01;Name=MsG0580028169.01 |
| Chr5 | mRNA | 76065794 | 76067583 | 76065794 | ID=MsG0580028169.01.T01;Parent=MsG0580028169.01;Name=MsG0580028169.01.T01;_AED=0.50;_eAED=0.94;_QI=0|0|0|1|0.66|0.57|7|0|241 |
| Chr5 | exon | 76067503 | 76067583 | 76067503 | ID=MsG0580028169.01.T01:exon:15446;Parent=MsG0580028169.01.T01 |
| Chr5 | exon | 76067121 | 76067327 | 76067121 | ID=MsG0580028169.01.T01:exon:15445;Parent=MsG0580028169.01.T01 |
| Chr5 | exon | 76066872 | 76066973 | 76066872 | ID=MsG0580028169.01.T01:exon:15444;Parent=MsG0580028169.01.T01 |
| Chr5 | exon | 76066636 | 76066752 | 76066636 | ID=MsG0580028169.01.T01:exon:15443;Parent=MsG0580028169.01.T01 |
| Chr5 | exon | 76066442 | 76066516 | 76066442 | ID=MsG0580028169.01.T01:exon:15442;Parent=MsG0580028169.01.T01 |
| Chr5 | exon | 76065938 | 76066030 | 76065938 | ID=MsG0580028169.01.T01:exon:15441;Parent=MsG0580028169.01.T01 |
| Chr5 | exon | 76065794 | 76065844 | 76065794 | ID=MsG0580028169.01.T01:exon:15440;Parent=MsG0580028169.01.T01 |
| Chr5 | CDS | 76067503 | 76067583 | 76067503 | ID=MsG0580028169.01.T01:cds;Parent=MsG0580028169.01.T01 |
| Chr5 | CDS | 76067121 | 76067327 | 76067121 | ID=MsG0580028169.01.T01:cds;Parent=MsG0580028169.01.T01 |
| Chr5 | CDS | 76066872 | 76066973 | 76066872 | ID=MsG0580028169.01.T01:cds;Parent=MsG0580028169.01.T01 |
| Chr5 | CDS | 76066636 | 76066752 | 76066636 | ID=MsG0580028169.01.T01:cds;Parent=MsG0580028169.01.T01 |
| Chr5 | CDS | 76066442 | 76066516 | 76066442 | ID=MsG0580028169.01.T01:cds;Parent=MsG0580028169.01.T01 |
| Chr5 | CDS | 76065938 | 76066030 | 76065938 | ID=MsG0580028169.01.T01:cds;Parent=MsG0580028169.01.T01 |
| Chr5 | CDS | 76065794 | 76065844 | 76065794 | ID=MsG0580028169.01.T01:cds;Parent=MsG0580028169.01.T01 |
| Gene Sequence |
| Protein sequence |
