Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032158.01.T01 | XP_039689812.1 | 79.07 | 172 | 20 | 2 | 1 | 156 | 13 | 184 | 8.85E-86 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032158.01.T01 | A0A396I8I4 | 68.605 | 172 | 21 | 3 | 1 | 156 | 174 | 328 | 1.98e-64 | 216 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048874.01 | MsG0680032158.01 | 0.806024 | 1.005668e-49 | 5.401264e-47 |
| MsG0180000470.01 | MsG0680032158.01 | 0.836976 | 6.822320e-57 | 8.738299e-54 |
| MsG0180000650.01 | MsG0680032158.01 | 0.812258 | 4.640061e-51 | 2.936093e-48 |
| MsG0180001063.01 | MsG0680032158.01 | 0.800463 | 1.424163e-48 | 6.635353e-46 |
| MsG0180001342.01 | MsG0680032158.01 | 0.800424 | 1.450537e-48 | 6.752013e-46 |
| MsG0180001971.01 | MsG0680032158.01 | 0.801739 | 7.812031e-49 | 3.759017e-46 |
| MsG0180002089.01 | MsG0680032158.01 | 0.810614 | 1.056202e-50 | 6.396603e-48 |
| MsG0180002233.01 | MsG0680032158.01 | 0.823798 | 1.141036e-53 | 9.925819e-51 |
| MsG0180002234.01 | MsG0680032158.01 | 0.842603 | 2.338352e-58 | 3.563808e-55 |
| MsG0180002680.01 | MsG0680032158.01 | 0.802522 | 5.391120e-49 | 2.646352e-46 |
| MsG0180002842.01 | MsG0680032158.01 | 0.804400 | 2.199498e-49 | 1.132936e-46 |
| MsG0180005457.01 | MsG0680032158.01 | 0.802589 | 5.223191e-49 | 2.568405e-46 |
| MsG0180006054.01 | MsG0680032158.01 | 0.801925 | 7.152249e-49 | 3.458063e-46 |
| MsG0180006257.01 | MsG0680032158.01 | 0.812449 | 4.215295e-51 | 2.681166e-48 |
| MsG0280006324.01 | MsG0680032158.01 | 0.817092 | 3.944835e-52 | 2.845727e-49 |
| MsG0280006325.01 | MsG0680032158.01 | 0.818035 | 2.417655e-52 | 1.789672e-49 |
| MsG0380011568.01 | MsG0680032158.01 | 0.817512 | 3.174100e-52 | 2.316298e-49 |
| MsG0380011609.01 | MsG0680032158.01 | 0.806303 | 8.784098e-50 | 4.751342e-47 |
| MsG0380012007.01 | MsG0680032158.01 | 0.803174 | 3.953808e-49 | 1.973473e-46 |
| MsG0380012009.01 | MsG0680032158.01 | 0.811876 | 5.621401e-51 | 3.520201e-48 |
| MsG0380012330.01 | MsG0680032158.01 | 0.813285 | 2.765934e-51 | 1.798702e-48 |
| MsG0380014239.01 | MsG0680032158.01 | 0.814038 | 1.888012e-51 | 1.253189e-48 |
| MsG0380014251.01 | MsG0680032158.01 | 0.847588 | 1.051972e-59 | 1.878819e-56 |
| MsG0680030880.01 | MsG0680032158.01 | 0.804182 | 2.442319e-49 | 1.250981e-46 |
| MsG0680030882.01 | MsG0680032158.01 | 0.813819 | 2.110197e-51 | 1.392355e-48 |
| MsG0680032157.01 | MsG0680032158.01 | 0.817031 | 4.072366e-52 | 2.932908e-49 |
| MsG0680032158.01 | MsG0680032355.01 | 0.809291 | 2.034733e-50 | 1.190011e-47 |
| MsG0680032158.01 | MsG0680033647.01 | 0.813519 | 2.456560e-51 | 1.607821e-48 |
| MsG0680032158.01 | MsG0680034464.01 | 0.805048 | 1.611448e-49 | 8.440329e-47 |
| MsG0680032158.01 | MsG0680034565.01 | 0.806786 | 6.946915e-50 | 3.804316e-47 |
| MsG0680032158.01 | MsG0680035115.01 | 0.812675 | 3.762752e-51 | 2.407412e-48 |
| MsG0680032158.01 | MsG0680035444.01 | 0.803450 | 3.465833e-49 | 1.742215e-46 |
| MsG0680032158.01 | MsG0780036080.01 | 0.826555 | 2.544354e-54 | 2.393989e-51 |
| MsG0680032158.01 | MsG0780036201.01 | 0.800090 | 1.696801e-48 | 7.831213e-46 |
| MsG0680032158.01 | MsG0780037457.01 | 0.800270 | 1.559310e-48 | 7.229683e-46 |
| MsG0680032158.01 | MsG0780037606.01 | 0.803529 | 3.338414e-49 | 1.681633e-46 |
| MsG0680032158.01 | MsG0780038439.01 | 0.824659 | 7.158423e-54 | 6.382018e-51 |
| MsG0680032158.01 | MsG0780039178.01 | 0.821237 | 4.492990e-53 | 3.634918e-50 |
| MsG0680032158.01 | MsG0780039880.01 | 0.811798 | 5.846465e-51 | 3.653493e-48 |
| MsG0680032158.01 | MsG0780040576.01 | -0.818723 | 1.689046e-52 | 1.274276e-49 |
| MsG0680032158.01 | MsG0780040596.01 | 0.826743 | 2.294475e-54 | 2.170545e-51 |
| MsG0680032158.01 | MsG0880041836.01 | 0.809608 | 1.739782e-50 | 1.026167e-47 |
| MsG0680032158.01 | MsG0880042161.01 | 0.819228 | 1.296337e-52 | 9.917432e-50 |
| MsG0680032158.01 | MsG0880042454.01 | 0.856043 | 4.200170e-62 | 9.893871e-59 |
| MsG0680032158.01 | MsG0880042656.01 | 0.800072 | 1.710507e-48 | 7.890985e-46 |
| MsG0680032158.01 | MsG0880043941.01 | 0.819236 | 1.291383e-52 | 9.881539e-50 |
| MsG0680032158.01 | MsG0880044209.01 | 0.802854 | 4.603312e-49 | 2.278999e-46 |
| MsG0680032158.01 | MsG0880044266.01 | 0.803871 | 2.835039e-49 | 1.440666e-46 |
| MsG0680032158.01 | MsG0880044323.01 | 0.823096 | 1.664724e-53 | 1.419677e-50 |
| MsG0680032158.01 | MsG0880045992.01 | 0.803374 | 3.594055e-49 | 1.803063e-46 |
| MsG0480018664.01 | MsG0680032158.01 | 0.801015 | 1.099062e-48 | 5.193379e-46 |
| MsG0480021536.01 | MsG0680032158.01 | 0.809406 | 1.922724e-50 | 1.127960e-47 |
| MsG0480021869.01 | MsG0680032158.01 | 0.805707 | 1.172329e-49 | 6.245714e-47 |
| MsG0480022068.01 | MsG0680032158.01 | 0.809068 | 2.271642e-50 | 1.320620e-47 |
| MsG0480022259.01 | MsG0680032158.01 | 0.817337 | 3.475272e-52 | 2.523860e-49 |
| MsG0480022262.01 | MsG0680032158.01 | 0.808990 | 2.360869e-50 | 1.369593e-47 |
| MsG0480023251.01 | MsG0680032158.01 | 0.806213 | 9.175072e-50 | 4.951694e-47 |
| MsG0580024552.01 | MsG0680032158.01 | 0.817158 | 3.811640e-52 | 2.754729e-49 |
| MsG0580025207.01 | MsG0680032158.01 | 0.805687 | 1.183557e-49 | 6.302154e-47 |
| MsG0580025832.01 | MsG0680032158.01 | 0.812858 | 3.430668e-51 | 2.205418e-48 |
| MsG0380015720.01 | MsG0680032158.01 | 0.801290 | 9.655928e-49 | 4.594170e-46 |
| MsG0380016285.01 | MsG0680032158.01 | 0.812691 | 3.732268e-51 | 2.388990e-48 |
| MsG0380016910.01 | MsG0680032158.01 | 0.804260 | 2.352816e-49 | 1.207534e-46 |
| MsG0380017220.01 | MsG0680032158.01 | 0.810834 | 9.462255e-51 | 5.764576e-48 |
| MsG0380017326.01 | MsG0680032158.01 | 0.804638 | 1.962200e-49 | 1.016935e-46 |
| MsG0380017821.01 | MsG0680032158.01 | 0.810962 | 8.878310e-51 | 5.427688e-48 |
| MsG0380017822.01 | MsG0680032158.01 | 0.812643 | 3.823320e-51 | 2.444149e-48 |
| MsG0480018236.01 | MsG0680032158.01 | 0.805450 | 1.326928e-49 | 7.022418e-47 |
| MsG0580026122.01 | MsG0680032158.01 | 0.806457 | 8.148679e-50 | 4.425200e-47 |
| MsG0580027018.01 | MsG0680032158.01 | 0.820132 | 8.062920e-53 | 6.326502e-50 |
| MsG0580027766.01 | MsG0680032158.01 | 0.814265 | 1.682151e-51 | 1.123440e-48 |
| MsG0580027922.01 | MsG0680032158.01 | 0.829513 | 4.936774e-55 | 5.063624e-52 |
| MsG0580028169.01 | MsG0680032158.01 | 0.831570 | 1.549039e-55 | 1.687719e-52 |
| MsG0580028170.01 | MsG0680032158.01 | 0.825255 | 5.179824e-54 | 4.696867e-51 |
| MsG0580028171.01 | MsG0680032158.01 | 0.801894 | 7.259136e-49 | 3.507095e-46 |
| MsG0580029381.01 | MsG0680032158.01 | 0.810032 | 1.410248e-50 | 8.411183e-48 |
| MsG0280006588.01 | MsG0680032158.01 | 0.801425 | 9.058226e-49 | 4.324466e-46 |
| MsG0280006770.01 | MsG0680032158.01 | 0.801356 | 9.359624e-49 | 4.460615e-46 |
| MsG0280008112.01 | MsG0680032158.01 | 0.800208 | 1.605373e-48 | 7.431448e-46 |
| MsG0280008648.01 | MsG0680032158.01 | 0.800019 | 1.753653e-48 | 8.079082e-46 |
| MsG0280009317.01 | MsG0680032158.01 | 0.816319 | 5.878140e-52 | 4.151896e-49 |
| MsG0280010117.01 | MsG0680032158.01 | 0.826138 | 3.197921e-54 | 2.973560e-51 |
| MsG0280010443.01 | MsG0680032158.01 | 0.802582 | 5.239545e-49 | 2.575975e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680032158.01.T01 | MTR_6g453310 | 56.303 | 119 | 22 | 2 | 17 | 132 | 2 | 93 | 7.35e-34 | 121 |
| MsG0680032158.01.T01 | MTR_0144s0030 | 50.685 | 146 | 45 | 4 | 8 | 133 | 256 | 394 | 9.80e-34 | 126 |
| MsG0680032158.01.T01 | MTR_3g008230 | 89.189 | 37 | 4 | 0 | 22 | 58 | 165 | 201 | 6.93e-17 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTATTCTCCTCGGTTTC+AGG | 0.131386 | 6:+35260921 | None:intergenic |
| TATTAATTACATGAAGAAAA+TGG | 0.173485 | 6:-35262352 | None:intergenic |
| GAGGGAAATGTTGGAACTTC+TGG | 0.223270 | 6:-35261005 | MsG0680032158.01.T01:CDS |
| TTGGTTGTGTTTGTTTCTTT+TGG | 0.237371 | 6:+35260966 | None:intergenic |
| AAGAGTTCAAGTAATGAAAA+AGG | 0.243861 | 6:-35260903 | MsG0680032158.01.T01:CDS |
| TTGTATTTCCCTGTCAGAAA+TGG | 0.318650 | 6:+35262318 | None:intergenic |
| AAGAAGTTCTAGTGTAGATA+TGG | 0.341310 | 6:-35260808 | MsG0680032158.01.T01:CDS |
| ATCATTGTAGGTCTTGTATA+CGG | 0.341798 | 6:-35261070 | MsG0680032158.01.T01:CDS |
| ATTAATTACATGAAGAAAAT+GGG | 0.353915 | 6:-35262351 | None:intergenic |
| CACTTCAATCAGATTGTCCT+TGG | 0.356731 | 6:+35260947 | None:intergenic |
| CATGGACCTTCTGAAGGTCT+TGG | 0.357266 | 6:+35262256 | None:intergenic |
| TCCCCTCGAGTGCTTGTTTG+TGG | 0.381895 | 6:+35260760 | None:intergenic |
| CACTACAACCGCGGAAACCT+TGG | 0.392087 | 6:-35261042 | MsG0680032158.01.T01:CDS |
| AGCGGTCATCACTTCGTGAT+TGG | 0.407724 | 6:-35262296 | MsG0680032158.01.T01:CDS |
| CTCAGCTATTCTTCTTTCCA+AGG | 0.421507 | 6:+35261025 | None:intergenic |
| TGTATTTCCCTGTCAGAAAT+GGG | 0.423421 | 6:+35262319 | None:intergenic |
| GAGATGCATCTTATCATTGT+AGG | 0.436346 | 6:-35261082 | MsG0680032158.01.T01:CDS |
| CTTCTATTATCTTCAGTCTC+AGG | 0.438068 | 6:+35260870 | None:intergenic |
| GCGGTCATCACTTCGTGATT+GGG | 0.442115 | 6:-35262295 | MsG0680032158.01.T01:CDS |
| AGGGAAATGTTGGAACTTCT+GGG | 0.461640 | 6:-35261004 | MsG0680032158.01.T01:CDS |
| AGAATAGCTGAGGGAAATGT+TGG | 0.469982 | 6:-35261014 | MsG0680032158.01.T01:CDS |
| TTCGTCGGTGTTGTACAGTC+TGG | 0.475558 | 6:+35262194 | None:intergenic |
| CAAGCACTCGAGGGGAAGAA+AGG | 0.486364 | 6:-35260753 | MsG0680032158.01.T01:CDS |
| GACCTTGTGGGACTCGAGCA+TGG | 0.499314 | 6:-35262234 | MsG0680032158.01.T01:CDS |
| CAGAAGGTCCATGACCTTGT+GGG | 0.500084 | 6:-35262246 | MsG0680032158.01.T01:CDS |
| TCGAGTGCTTGTTTGTGGTA+TGG | 0.500260 | 6:+35260765 | None:intergenic |
| ACTTGAACTCTTATTCTCCT+CGG | 0.523827 | 6:+35260914 | None:intergenic |
| AAGAGAAGCCCATTTCTGAC+AGG | 0.531384 | 6:-35262327 | MsG0680032158.01.T01:CDS |
| GCTCGAGTCCCACAAGGTCA+TGG | 0.542708 | 6:+35262238 | None:intergenic |
| GTTCTAGTGTAGATATGGAT+AGG | 0.555202 | 6:-35260803 | MsG0680032158.01.T01:CDS |
| TGAAGTGCAACCTGAAACCG+AGG | 0.557192 | 6:-35260931 | MsG0680032158.01.T01:CDS |
| GATAATAGAAGTTTGAGTGC+CGG | 0.560056 | 6:-35260858 | MsG0680032158.01.T01:CDS |
| TCAGAAGGTCCATGACCTTG+TGG | 0.566219 | 6:-35262247 | MsG0680032158.01.T01:CDS |
| TCGTGATTGGGATGTCAAGA+AGG | 0.569381 | 6:-35262283 | MsG0680032158.01.T01:CDS |
| CAAGGTCATGGACCTTCTGA+AGG | 0.569613 | 6:+35262250 | None:intergenic |
| CAATACAAGCGGACCTTCGT+CGG | 0.575233 | 6:+35262179 | None:intergenic |
| CGAGCATGGACTGACGGCCG+CGG | 0.585014 | 6:-35262220 | MsG0680032158.01.T01:CDS |
| TCTTCTTTCCAAGGTTTCCG+CGG | 0.585458 | 6:+35261034 | None:intergenic |
| CTTGGAAAGAAGAATAGCTG+AGG | 0.620235 | 6:-35261024 | MsG0680032158.01.T01:CDS |
| TACCACAAACAAGCACTCGA+GGG | 0.620755 | 6:-35260762 | MsG0680032158.01.T01:CDS |
| ATACCACAAACAAGCACTCG+AGG | 0.623115 | 6:-35260763 | MsG0680032158.01.T01:CDS |
| TTAATTACATGAAGAAAATG+GGG | 0.626557 | 6:-35262350 | None:intergenic |
| GGGACTCGAGCATGGACTGA+CGG | 0.628365 | 6:-35262226 | MsG0680032158.01.T01:CDS |
| GTCCATGCTCGAGTCCCACA+AGG | 0.638686 | 6:+35262232 | None:intergenic |
| TTGGAAAGAAGAATAGCTGA+GGG | 0.649019 | 6:-35261023 | MsG0680032158.01.T01:CDS |
| GGCAAACCAAGACCTTCAGA+AGG | 0.649702 | 6:-35262262 | MsG0680032158.01.T01:CDS |
| TTCTGACAGGGAAATACAAG+CGG | 0.657286 | 6:-35262314 | MsG0680032158.01.T01:CDS |
| AAAAGAAACAAACACAACCA+AGG | 0.660541 | 6:-35260964 | MsG0680032158.01.T01:CDS |
| ACCACAAACAAGCACTCGAG+GGG | 0.663833 | 6:-35260761 | MsG0680032158.01.T01:CDS |
| AGAGAAGCCCATTTCTGACA+GGG | 0.665195 | 6:-35262326 | MsG0680032158.01.T01:CDS |
| AGACTGTACAACACCGACGA+AGG | 0.681760 | 6:-35262192 | MsG0680032158.01.T01:intron |
| ACGGATCTACACTACAACCG+CGG | 0.689418 | 6:-35261051 | MsG0680032158.01.T01:CDS |
| GTTGTACAGTCTGGTTACCG+CGG | 0.697186 | 6:+35262203 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATTAATATAGATTAAA+TGG | - | Chr6:35260997-35261016 | MsG0680032158.01.T01:CDS | 10.0% |
| !!! | TTTTATATATATGTACTATT+AGG | + | Chr6:35261956-35261975 | None:intergenic | 10.0% |
| !! | CATATATATAAAAAAATTGC+AGG | - | Chr6:35261963-35261982 | MsG0680032158.01.T01:intron | 15.0% |
| !! | TATATAATCCTATCAAAATT+TGG | + | Chr6:35261368-35261387 | None:intergenic | 15.0% |
| !!! | AAATTTTGATAGGATTATAT+AGG | - | Chr6:35261367-35261386 | MsG0680032158.01.T01:intron | 15.0% |
| !! | AATCATTAGTATTGTTAAAC+CGG | - | Chr6:35261482-35261501 | MsG0680032158.01.T01:intron | 20.0% |
| !! | CTACTATTTATGCAATATTA+TGG | - | Chr6:35260970-35260989 | MsG0680032158.01.T01:CDS | 20.0% |
| !! | TTAAGGAAATAATTTCAGAT+TGG | - | Chr6:35261207-35261226 | MsG0680032158.01.T01:intron | 20.0% |
| !!! | AACTTCTTTCTTTTCTTTTT+CGG | + | Chr6:35262250-35262269 | None:intergenic | 20.0% |
| !!! | CTTAATTTAACTTATACTAG+CGG | + | Chr6:35261307-35261326 | None:intergenic | 20.0% |
| !!! | TGTTACATATTGTGTTTTTA+TGG | - | Chr6:35261920-35261939 | MsG0680032158.01.T01:intron | 20.0% |
| ! | AAACCAATTAACAATACTAC+TGG | + | Chr6:35261457-35261476 | None:intergenic | 25.0% |
| ! | AACCAATTAACAATACTACT+GGG | + | Chr6:35261456-35261475 | None:intergenic | 25.0% |
| ! | AAGAGTTCAAGTAATGAAAA+AGG | - | Chr6:35262167-35262186 | MsG0680032158.01.T01:intron | 25.0% |
| ! | AGAGTTCAAGTAATGAAAAA+GGG | - | Chr6:35262168-35262187 | MsG0680032158.01.T01:intron | 25.0% |
| ! | CTATTTATGCAATATTATGG+CGG | - | Chr6:35260973-35260992 | MsG0680032158.01.T01:CDS | 25.0% |
| ! | TAACTAACAAGTAACAAACA+AGG | + | Chr6:35261233-35261252 | None:intergenic | 25.0% |
| ! | TAGATTAAATGGTTTCAAGA+TGG | - | Chr6:35261008-35261027 | MsG0680032158.01.T01:CDS | 25.0% |
| ! | TTGGAAATCATTAAGATATC+CGG | + | Chr6:35261504-35261523 | None:intergenic | 25.0% |
| !! | ACTTCTTTCTTTTCTTTTTC+GGG | + | Chr6:35262249-35262268 | None:intergenic | 25.0% |
| AAAAGAAACAAACACAACCA+AGG | - | Chr6:35262106-35262125 | MsG0680032158.01.T01:intron | 30.0% | |
| AAGATGCATCTTGTTGATAT+AGG | + | Chr6:35261716-35261735 | None:intergenic | 30.0% | |
| ATAAAGGAACCGAATCATAA+CGG | - | Chr6:35261613-35261632 | MsG0680032158.01.T01:intron | 30.0% | |
| ATAATATTGTGTAACACCCA+CGG | - | Chr6:35261525-35261544 | MsG0680032158.01.T01:intron | 30.0% | |
| ATCCCAGTAGTATTGTTAAT+TGG | - | Chr6:35261451-35261470 | MsG0680032158.01.T01:intron | 30.0% | |
| ATTGAAAACTATATGTGTGC+TGG | + | Chr6:35261153-35261172 | None:intergenic | 30.0% | |
| GAAGGCTTATAAGAATTGTT+AGG | - | Chr6:35261685-35261704 | MsG0680032158.01.T01:intron | 30.0% | |
| TCATGTCTTGTGTGAATTTA+AGG | + | Chr6:35261344-35261363 | None:intergenic | 30.0% | |
| TTCAAGTAATGAAAAAGGGA+TGG | - | Chr6:35262172-35262191 | MsG0680032158.01.T01:intron | 30.0% | |
| TTGAGAGATATAAACTACTC+TGG | + | Chr6:35261054-35261073 | None:intergenic | 30.0% | |
| ! | AACAAGATGCATCTTCTTTT+CGG | - | Chr6:35261721-35261740 | MsG0680032158.01.T01:intron | 30.0% |
| ! | AAGAAGTTCTAGTGTAGATA+TGG | - | Chr6:35262262-35262281 | MsG0680032158.01.T01:CDS | 30.0% |
| ! | ATCATTGTAGGTCTTGTATA+CGG | - | Chr6:35262000-35262019 | MsG0680032158.01.T01:intron | 30.0% |
| ! | GGTGTTACACAATATTATGT+TGG | + | Chr6:35261523-35261542 | None:intergenic | 30.0% |
| ! | TGTGAATTTAAGGCTCTTTA+TGG | + | Chr6:35261334-35261353 | None:intergenic | 30.0% |
| !! | ATTTCCTTAAGTTGAAGACA+AGG | + | Chr6:35261197-35261216 | None:intergenic | 30.0% |
| !! | GACATGAACCAAATTTTGAT+AGG | - | Chr6:35261357-35261376 | MsG0680032158.01.T01:intron | 30.0% |
| !! | TTGGTTGTGTTTGTTTCTTT+TGG | + | Chr6:35262107-35262126 | None:intergenic | 30.0% |
| !! | TTTCCTTAAGTTGAAGACAA+GGG | + | Chr6:35261196-35261215 | None:intergenic | 30.0% |
| AATCCAACACATGCATGTAA+TGG | + | Chr6:35261111-35261130 | None:intergenic | 35.0% | |
| ACTTGAACTCTTATTCTCCT+CGG | + | Chr6:35262159-35262178 | None:intergenic | 35.0% | |
| ATTCCCTTGTCTTCAACTTA+AGG | - | Chr6:35261190-35261209 | MsG0680032158.01.T01:intron | 35.0% | |
| CTTCTATTATCTTCAGTCTC+AGG | + | Chr6:35262203-35262222 | None:intergenic | 35.0% | |
| GAGATGCATCTTATCATTGT+AGG | - | Chr6:35261988-35262007 | MsG0680032158.01.T01:intron | 35.0% | |
| GATAATAGAAGTTTGAGTGC+CGG | - | Chr6:35262212-35262231 | MsG0680032158.01.T01:CDS | 35.0% | |
| GCATCAAAACACAATACAAG+CGG | + | Chr6:35260905-35260924 | None:intergenic | 35.0% | |
| GGGAATATGAAAACTATACG+TGG | + | Chr6:35261176-35261195 | None:intergenic | 35.0% | |
| GTTCTAGTGTAGATATGGAT+AGG | - | Chr6:35262267-35262286 | MsG0680032158.01.T01:CDS | 35.0% | |
| GTTGATGCTCATTCTATAGT+AGG | + | Chr6:35261277-35261296 | None:intergenic | 35.0% | |
| TACTGGGATAATTACAACTG+AGG | + | Chr6:35261440-35261459 | None:intergenic | 35.0% | |
| TGTATTTCCCTGTCAGAAAT+GGG | + | Chr6:35260754-35260773 | None:intergenic | 35.0% | |
| TTATATCTCTCAACTGCACT+TGG | - | Chr6:35261061-35261080 | MsG0680032158.01.T01:CDS | 35.0% | |
| TTGGAAAGAAGAATAGCTGA+GGG | - | Chr6:35262047-35262066 | MsG0680032158.01.T01:intron | 35.0% | |
| TTGTATTTCCCTGTCAGAAA+TGG | + | Chr6:35260755-35260774 | None:intergenic | 35.0% | |
| !!! | TTTTCGGGTTAGATATGTTC+CGG | + | Chr6:35262234-35262253 | None:intergenic | 35.0% |
| AGAATAGCTGAGGGAAATGT+TGG | - | Chr6:35262056-35262075 | MsG0680032158.01.T01:intron | 40.0% | |
| AGGGAAATGTTGGAACTTCT+GGG | - | Chr6:35262066-35262085 | MsG0680032158.01.T01:intron | 40.0% | |
| ATGTAACATCCCAGACTTTC+AGG | + | Chr6:35261908-35261927 | None:intergenic | 40.0% | |
| CACTTCAATCAGATTGTCCT+TGG | + | Chr6:35262126-35262145 | None:intergenic | 40.0% | |
| CATGTAGTCTCATACCTACA+CGG | + | Chr6:35261658-35261677 | None:intergenic | 40.0% | |
| CCTCTCATTCCGTTATGATT+CGG | + | Chr6:35261625-35261644 | None:intergenic | 40.0% | |
| CTCAGCTATTCTTCTTTCCA+AGG | + | Chr6:35262048-35262067 | None:intergenic | 40.0% | |
| CTTGGAAAGAAGAATAGCTG+AGG | - | Chr6:35262046-35262065 | MsG0680032158.01.T01:intron | 40.0% | |
| GCTCATTCTATAGTAGGTGA+TGG | + | Chr6:35261271-35261290 | None:intergenic | 40.0% | |
| GCTTAACTGTGGAGTTCTTA+TGG | + | Chr6:35261756-35261775 | None:intergenic | 40.0% | |
| GTATGAGACTACATGGTTGA+AGG | - | Chr6:35261663-35261682 | MsG0680032158.01.T01:intron | 40.0% | |
| TCGGTTCCTTTATAAGCTGT+CGG | + | Chr6:35261606-35261625 | None:intergenic | 40.0% | |
| TTCTGACAGGGAAATACAAG+CGG | - | Chr6:35260756-35260775 | MsG0680032158.01.T01:CDS | 40.0% | |
| TTGCCATTACATGCATGTGT+TGG | - | Chr6:35261105-35261124 | MsG0680032158.01.T01:intron | 40.0% | |
| ! | CGAATCATAACGGAATGAGA+GGG | - | Chr6:35261623-35261642 | MsG0680032158.01.T01:intron | 40.0% |
| ! | TTTTCTCTCACCTTAGAGAG+TGG | + | Chr6:35260938-35260957 | None:intergenic | 40.0% |
| !! | AAGACTCGTGTTTGGTTTGT+AGG | - | Chr6:35261870-35261889 | MsG0680032158.01.T01:intron | 40.0% |
| !! | AGACTCGTGTTTGGTTTGTA+GGG | - | Chr6:35261871-35261890 | MsG0680032158.01.T01:intron | 40.0% |
| !! | TGCTTGACTTGGAGCAATTT+GGG | - | Chr6:35261777-35261796 | MsG0680032158.01.T01:intron | 40.0% |
| AAGAGAAGCCCATTTCTGAC+AGG | - | Chr6:35260743-35260762 | MsG0680032158.01.T01:CDS | 45.0% | |
| AAGTCAAGCACGCTTAACTG+TGG | + | Chr6:35261767-35261786 | None:intergenic | 45.0% | |
| ACAGTTAAGCGTGCTTGACT+TGG | - | Chr6:35261766-35261785 | MsG0680032158.01.T01:intron | 45.0% | |
| ACGCTGAAAAGACTCGTGTT+TGG | - | Chr6:35261862-35261881 | MsG0680032158.01.T01:intron | 45.0% | |
| AGAGAAGCCCATTTCTGACA+GGG | - | Chr6:35260744-35260763 | MsG0680032158.01.T01:CDS | 45.0% | |
| AGATACCTGTCCACTCTCTA+AGG | - | Chr6:35260925-35260944 | MsG0680032158.01.T01:CDS | 45.0% | |
| ATACCACAAACAAGCACTCG+AGG | - | Chr6:35262307-35262326 | MsG0680032158.01.T01:CDS | 45.0% | |
| CGGTTCCTTTATAAGCTGTC+GGG | + | Chr6:35261605-35261624 | None:intergenic | 45.0% | |
| CGTGTAGGTATGAGACTACA+TGG | - | Chr6:35261656-35261675 | MsG0680032158.01.T01:intron | 45.0% | |
| CTCTTATTCTCCTCGGTTTC+AGG | + | Chr6:35262152-35262171 | None:intergenic | 45.0% | |
| GAGACTACATGGTTGAAGGA+AGG | - | Chr6:35261667-35261686 | MsG0680032158.01.T01:intron | 45.0% | |
| GAGGGAAATGTTGGAACTTC+TGG | - | Chr6:35262065-35262084 | MsG0680032158.01.T01:intron | 45.0% | |
| TACCACAAACAAGCACTCGA+GGG | - | Chr6:35262308-35262327 | MsG0680032158.01.T01:CDS | 45.0% | |
| TCGAGTGCTTGTTTGTGGTA+TGG | + | Chr6:35262308-35262327 | None:intergenic | 45.0% | |
| TCGTGATTGGGATGTCAAGA+AGG | - | Chr6:35260787-35260806 | MsG0680032158.01.T01:CDS | 45.0% | |
| TCTTCTTTCCAAGGTTTCCG+CGG | + | Chr6:35262039-35262058 | None:intergenic | 45.0% | |
| ! | CCGAATCATAACGGAATGAG+AGG | - | Chr6:35261622-35261641 | MsG0680032158.01.T01:intron | 45.0% |
| ! | GACTTGGAGCAATTTGGGAT+GGG | - | Chr6:35261782-35261801 | MsG0680032158.01.T01:intron | 45.0% |
| ! | TGACTTGGAGCAATTTGGGA+TGG | - | Chr6:35261781-35261800 | MsG0680032158.01.T01:intron | 45.0% |
| !! | GTGCTTGACTTGGAGCAATT+TGG | - | Chr6:35261776-35261795 | MsG0680032158.01.T01:intron | 45.0% |
| !! | TGTTTGGTTTGTAGGGTCGT+CGG | - | Chr6:35261878-35261897 | MsG0680032158.01.T01:intron | 45.0% |
| ACCACAAACAAGCACTCGAG+GGG | - | Chr6:35262309-35262328 | MsG0680032158.01.T01:CDS | 50.0% | |
| ACGGATCTACACTACAACCG+CGG | - | Chr6:35262019-35262038 | MsG0680032158.01.T01:intron | 50.0% | |
| AGACTGTACAACACCGACGA+AGG | - | Chr6:35260878-35260897 | MsG0680032158.01.T01:CDS | 50.0% | |
| AGCGGTCATCACTTCGTGAT+TGG | - | Chr6:35260774-35260793 | MsG0680032158.01.T01:CDS | 50.0% | |
| CAAGGTCATGGACCTTCTGA+AGG | + | Chr6:35260823-35260842 | None:intergenic | 50.0% | |
| CAATACAAGCGGACCTTCGT+CGG | + | Chr6:35260894-35260913 | None:intergenic | 50.0% | |
| CAGAAGGTCCATGACCTTGT+GGG | - | Chr6:35260824-35260843 | MsG0680032158.01.T01:CDS | 50.0% | |
| GCGGTCATCACTTCGTGATT+GGG | - | Chr6:35260775-35260794 | MsG0680032158.01.T01:CDS | 50.0% | |
| GGCAAACCAAGACCTTCAGA+AGG | - | Chr6:35260808-35260827 | MsG0680032158.01.T01:CDS | 50.0% | |
| GTCGGCAATCCTGAAAGTCT+GGG | - | Chr6:35261896-35261915 | MsG0680032158.01.T01:intron | 50.0% | |
| GTTGTACAGTCTGGTTACCG+CGG | + | Chr6:35260870-35260889 | None:intergenic | 50.0% | |
| TCAGAAGGTCCATGACCTTG+TGG | - | Chr6:35260823-35260842 | MsG0680032158.01.T01:CDS | 50.0% | |
| TCTCACCTTAGAGAGTGGAC+AGG | + | Chr6:35260933-35260952 | None:intergenic | 50.0% | |
| TGAAGTGCAACCTGAAACCG+AGG | - | Chr6:35262139-35262158 | MsG0680032158.01.T01:intron | 50.0% | |
| ! | ATTTGGGATGGGTGACCTAC+CGG | - | Chr6:35261793-35261812 | MsG0680032158.01.T01:intron | 50.0% |
| ! | CATGGACCTTCTGAAGGTCT+TGG | + | Chr6:35260817-35260836 | None:intergenic | 50.0% |
| !! | TTCGTCGGTGTTGTACAGTC+TGG | + | Chr6:35260879-35260898 | None:intergenic | 50.0% |
| ACGCTTACCGGGAAACTTCC+CGG | + | Chr6:35261815-35261834 | None:intergenic | 55.0% | |
| ACGGAATGAGAGGGATCCTG+AGG | - | Chr6:35261632-35261651 | MsG0680032158.01.T01:intron | 55.0% | |
| CAAGCACTCGAGGGGAAGAA+AGG | - | Chr6:35262317-35262336 | MsG0680032158.01.T01:CDS | 55.0% | |
| CACTACAACCGCGGAAACCT+TGG | - | Chr6:35262028-35262047 | MsG0680032158.01.T01:intron | 55.0% | |
| CATTGTCGTGCCTTGTGCAC+CGG | + | Chr6:35261575-35261594 | None:intergenic | 55.0% | |
| CGGCTCCCGACAGCTTATAA+AGG | - | Chr6:35261597-35261616 | MsG0680032158.01.T01:intron | 55.0% | |
| CGTCGGCAATCCTGAAAGTC+TGG | - | Chr6:35261895-35261914 | MsG0680032158.01.T01:intron | 55.0% | |
| GCACAAGGCACGACAATGAG+CGG | - | Chr6:35261577-35261596 | MsG0680032158.01.T01:intron | 55.0% | |
| GTCCTCACTTGCACGCTTAC+CGG | + | Chr6:35261827-35261846 | None:intergenic | 55.0% | |
| TCCCCTCGAGTGCTTGTTTG+TGG | + | Chr6:35262313-35262332 | None:intergenic | 55.0% | |
| TCCTCACTTGCACGCTTACC+GGG | + | Chr6:35261826-35261845 | None:intergenic | 55.0% | |
| TCTCATACCTACACGGCCTC+AGG | + | Chr6:35261651-35261670 | None:intergenic | 55.0% | |
| TGACCTACCGGGAAGTTTCC+CGG | - | Chr6:35261805-35261824 | MsG0680032158.01.T01:intron | 55.0% | |
| TTACCGGGAAACTTCCCGGT+AGG | + | Chr6:35261811-35261830 | None:intergenic | 55.0% | |
| ! | TTTGGGATGGGTGACCTACC+GGG | - | Chr6:35261794-35261813 | MsG0680032158.01.T01:intron | 55.0% |
| CGTGCAAGTGAGGACGAGTG+CGG | - | Chr6:35261832-35261851 | MsG0680032158.01.T01:intron | 60.0% | |
| GACCTTGTGGGACTCGAGCA+TGG | - | Chr6:35260836-35260855 | MsG0680032158.01.T01:CDS | 60.0% | |
| GCTCGAGTCCCACAAGGTCA+TGG | + | Chr6:35260835-35260854 | None:intergenic | 60.0% | |
| GTCCATGCTCGAGTCCCACA+AGG | + | Chr6:35260841-35260860 | None:intergenic | 60.0% | |
| TCCCGGTAAGCGTGCAAGTG+AGG | - | Chr6:35261822-35261841 | MsG0680032158.01.T01:intron | 60.0% | |
| ! | GGGACTCGAGCATGGACTGA+CGG | - | Chr6:35260844-35260863 | MsG0680032158.01.T01:CDS | 60.0% |
| ACCCACGGCTGACGAGAGCA+AGG | - | Chr6:35261540-35261559 | MsG0680032158.01.T01:intron | 65.0% | |
| CCCACGGCTGACGAGAGCAA+GGG | - | Chr6:35261541-35261560 | MsG0680032158.01.T01:intron | 65.0% | |
| CCCTTGCTCTCGTCAGCCGT+GGG | + | Chr6:35261544-35261563 | None:intergenic | 65.0% | |
| GAGAGCAAGGGAGTGGTCGC+CGG | - | Chr6:35261553-35261572 | MsG0680032158.01.T01:intron | 65.0% | |
| GAGGGATCCTGAGGCCGTGT+AGG | - | Chr6:35261641-35261660 | MsG0680032158.01.T01:intron | 65.0% | |
| GGCTGACGAGAGCAAGGGAG+TGG | - | Chr6:35261546-35261565 | MsG0680032158.01.T01:intron | 65.0% | |
| TCCCTTGCTCTCGTCAGCCG+TGG | + | Chr6:35261545-35261564 | None:intergenic | 65.0% | |
| GGAGTGGTCGCCGGTGCACA+AGG | - | Chr6:35261562-35261581 | MsG0680032158.01.T01:intron | 70.0% | |
| ! | CGAGCATGGACTGACGGCCG+CGG | - | Chr6:35260850-35260869 | MsG0680032158.01.T01:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 35260728 | 35262364 | 35260728 | ID=MsG0680032158.01;Name=MsG0680032158.01 |
| Chr6 | mRNA | 35260728 | 35262364 | 35260728 | ID=MsG0680032158.01.T01;Parent=MsG0680032158.01;Name=MsG0680032158.01.T01;_AED=0.38;_eAED=0.45;_QI=0|0|0|1|1|1|2|0|183 |
| Chr6 | exon | 35262193 | 35262364 | 35262193 | ID=MsG0680032158.01.T01:exon:19141;Parent=MsG0680032158.01.T01 |
| Chr6 | exon | 35260728 | 35261107 | 35260728 | ID=MsG0680032158.01.T01:exon:19140;Parent=MsG0680032158.01.T01 |
| Chr6 | CDS | 35262193 | 35262364 | 35262193 | ID=MsG0680032158.01.T01:cds;Parent=MsG0680032158.01.T01 |
| Chr6 | CDS | 35260728 | 35261107 | 35260728 | ID=MsG0680032158.01.T01:cds;Parent=MsG0680032158.01.T01 |
| Gene Sequence |
| Protein sequence |
