AlfalfaGEDB | MsG0580028577.01

M. sativa cultivar ZhongmuNo.1 / MsG0580028577.01

KEGG: -
GO: GO:0004601 GO:0006979 GO:0020037 GO:0055114
PFAM: PF00141 PF14111

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028577.01.T01	PNX74351.1	65.121	539	123	4	294	767	1	539	0	718

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028577.01.T01	Q9FLC0	48.469	196	69	5	4	170	88	280	2.78E-45	168

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028577.01.T01	A0A2K3L732	65.121	539	123	4	294	767	1	539	0.0	718

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000029.01	MsG0580028577.01	0.827867	1.233981e-54	1.206282e-51
MsG0180001029.01	MsG0580028577.01	0.812483	4.144050e-51	2.638129e-48
MsG0180003320.01	MsG0580028577.01	0.821304	4.335957e-53	3.514379e-50
MsG0180003600.01	MsG0580028577.01	0.812575	3.956419e-51	2.524703e-48
MsG0280007513.01	MsG0580028577.01	0.802014	6.857569e-49	3.323086e-46
MsG0280007689.01	MsG0580028577.01	0.805555	1.261633e-49	6.694527e-47
MsG0280008226.01	MsG0580028577.01	0.812191	4.800642e-51	3.032164e-48
MsG0380017901.01	MsG0580028577.01	0.808334	3.258663e-50	1.858241e-47
MsG0480020285.01	MsG0580028577.01	0.803370	3.600084e-49	1.805914e-46
MsG0480021091.01	MsG0580028577.01	0.802808	4.704901e-49	2.326705e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028577.01.T01	MTR_5g074860	77.114	201	20	1	3	177	86	286	3.06e-96	302
MsG0580028577.01.T01	MTR_5g074860	78.857	175	24	1	3	177	86	247	3.28e-86	275
MsG0580028577.01.T01	MTR_5g074710	57.277	213	61	2	3	185	82	294	9.94e-71	235
MsG0580028577.01.T01	MTR_5g074740	59.701	201	55	1	3	177	82	282	2.21e-69	231
MsG0580028577.01.T01	MTR_5g074760	59.701	201	55	1	3	177	82	282	1.66e-68	229
MsG0580028577.01.T01	MTR_1g070150	66.250	160	47	3	240	397	1	155	1.33e-64	213
MsG0580028577.01.T01	MTR_3g467600	52.970	202	68	2	3	177	84	285	6.56e-59	203
MsG0580028577.01.T01	MTR_6g037050	92.784	97	7	0	371	467	1	97	3.25e-58	203
MsG0580028577.01.T01	MTR_4g029180	52.356	191	61	4	3	165	84	272	1.09e-50	180
MsG0580028577.01.T01	MTR_5g074700	52.432	185	48	2	19	177	5	175	1.27e-50	177

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0580028577.01.T01	AT5G05340	48.469	196	69	5	4	170	88	280	2.84e-46	168
MsG0580028577.01.T01	AT5G58390	42.424	198	81	6	3	170	78	272	2.34e-34	134
MsG0580028577.01.T01	AT1G14540	37.021	235	99	6	3	209	78	291	4.34e-34	133
MsG0580028577.01.T01	AT4G16270	44.681	188	67	6	9	162	113	297	5.59e-34	134
MsG0580028577.01.T01	AT1G14550	38.249	217	90	7	9	185	89	301	4.20e-33	130
MsG0580028577.01.T01	AT5G58400	41.837	196	81	6	5	170	89	281	6.58e-33	130
MsG0580028577.01.T01	AT4G36430	39.153	189	78	4	9	163	93	278	1.01e-32	130
MsG0580028577.01.T01	AT1G44970	40.777	206	82	5	9	180	108	307	1.06e-32	130
MsG0580028577.01.T01	AT5G66390	39.683	189	77	4	9	163	96	281	1.09e-32	130
MsG0580028577.01.T01	AT2G35380	40.838	191	73	4	9	162	5	192	3.55e-32	125

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Find 204 sgRNAs with CRISPR-Local

Find 513 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTATGGATAACGATAA+TGG	0.303219	5:-82742252	MsG0580028577.01.T01:CDS
AAAATTTGGAAGCTTCAAGG+AGG	0.687967	5:-82742279	MsG0580028577.01.T01:CDS
AAACGCCAAAGTTGAACGCA+CGG	0.655545	5:-82742109	MsG0580028577.01.T01:CDS
AAAGACCTTGTAGCTCTTTC+TGG	0.185151	5:-82745796	MsG0580028577.01.T01:CDS
AAATATGGGTTAACGGTCAC+TGG	0.483006	5:-82741909	MsG0580028577.01.T01:CDS
AAATATTAACCAAGGTCCGC+CGG	0.565589	5:+82742179	None:intergenic
AAATCTCCAATTAACATCCA+AGG	0.578987	5:+82740534	None:intergenic
AACACCTCTATCAAGCTTCT+TGG	0.335177	5:+82740350	None:intergenic
AACACTCTGAGAGTTGAAAG+AGG	0.585928	5:-82741985	MsG0580028577.01.T01:CDS
AACCCTCCTCTTTGCTCACT+AGG	0.517129	5:+82740495	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGTCCTATTGACAACAAA+AGG	-	Chr5:82744947-82744966	MsG0580028577.01.T01:intron	30.0%
AAATCTCCAATTAACATCCA+AGG	+	Chr5:82745823-82745842	None:intergenic	30.0%
AAATCTCTAGCAAAAGCTAA+AGG	+	Chr5:82740858-82740877	None:intergenic	30.0%
AAGACTTCTTTGATCAAGAT+GGG	-	Chr5:82740879-82740898	MsG0580028577.01.T01:CDS	30.0%
AATCTCTAGCAAAAGCTAAA+GGG	+	Chr5:82740857-82740876	None:intergenic	30.0%
ACAATGATTGTTTGGCAATT+GGG	+	Chr5:82744999-82745018	None:intergenic	30.0%
ACAATTGTTGATCAGAATGA+AGG	+	Chr5:82740784-82740803	None:intergenic	30.0%
ACCAATATTATTCCAGAATG+TGG	+	Chr5:82745563-82745582	None:intergenic	30.0%
AGCACATTGTAGAAAAATTG+TGG	+	Chr5:82740421-82740440	None:intergenic	30.0%
ATCCATAAGAAATATCCTAG+CGG	-	Chr5:82745091-82745110	MsG0580028577.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	82740053	82746323	82740053	ID=MsG0580028577.01;Name=MsG0580028577.01
Chr5	mRNA	82740053	82746323	82740053	ID=MsG0580028577.01.T01;Parent=MsG0580028577.01;Name=MsG0580028577.01.T01;_AED=0.41;_eAED=0.41;_QI=0\|0\|0\|0.85\|1\|1\|7\|0\|783
Chr5	exon	82746155	82746323	82746155	ID=MsG0580028577.01.T01:exon:21331;Parent=MsG0580028577.01.T01
Chr5	exon	82745781	82745967	82745781	ID=MsG0580028577.01.T01:exon:21330;Parent=MsG0580028577.01.T01
Chr5	exon	82745530	82745703	82745530	ID=MsG0580028577.01.T01:exon:21329;Parent=MsG0580028577.01.T01
Chr5	exon	82743822	82743987	82743822	ID=MsG0580028577.01.T01:exon:21328;Parent=MsG0580028577.01.T01
Chr5	exon	82742358	82742657	82742358	ID=MsG0580028577.01.T01:exon:21327;Parent=MsG0580028577.01.T01
Chr5	exon	82741875	82742301	82741875	ID=MsG0580028577.01.T01:exon:21326;Parent=MsG0580028577.01.T01
Chr5	exon	82740053	82740981	82740053	ID=MsG0580028577.01.T01:exon:21325;Parent=MsG0580028577.01.T01
Chr5	CDS	82746155	82746323	82746155	ID=MsG0580028577.01.T01:cds;Parent=MsG0580028577.01.T01
Chr5	CDS	82745781	82745967	82745781	ID=MsG0580028577.01.T01:cds;Parent=MsG0580028577.01.T01
Chr5	CDS	82745530	82745703	82745530	ID=MsG0580028577.01.T01:cds;Parent=MsG0580028577.01.T01
Chr5	CDS	82743822	82743987	82743822	ID=MsG0580028577.01.T01:cds;Parent=MsG0580028577.01.T01
Chr5	CDS	82742358	82742657	82742358	ID=MsG0580028577.01.T01:cds;Parent=MsG0580028577.01.T01
Chr5	CDS	82741875	82742301	82741875	ID=MsG0580028577.01.T01:cds;Parent=MsG0580028577.01.T01
Chr5	CDS	82740053	82740981	82740053	ID=MsG0580028577.01.T01:cds;Parent=MsG0580028577.01.T01

Gene Sequence

>MsG0580028577.01.T01

ATGATACCCCAATTTCACTGGGGGAAAACAGCTCGTCCAAATATTAATTCAATCAGAGGATTTTCTGTTGTTGATGAAATCAAAGCAACAGTTGATAAAGTATGCAAAGGCCCTGTGGTATCTTGCGCTGATATTTTAGCCACAGCAGCTCGTGATTCTGTAGCCATACTTGGGAGGTCCACAATTTTTCTACAATGTGCTATTGGGAGAAGAGATGCAAGAACAGCAAGTAGAGCAGCTGCAAATGCAAATCTTCCATCTCCAACATTCAACTTCTCACAGCTTATTTCAAATTTCAAATCACAAGGATTAAATGTAAAAGACCTTGTAGCTCTTTCTGGTGGTCACACTATAGGGAAGACTTGTCCTAGAAATGGTGGAGACAACAATTTAACACCACTTGATTTCACTCCTACAAGAGTTGAAAATACATATTATAGAGATTTGCTATACAAAAGGGGTGTCCTTCATTCTGATCAACAATTGTTTAAGGGACAAGGTAGTGAAAGTGACAAATTTGGAGCTATATACCATAGTTTTCAGACTCGGCTCGGACCGGCCGGTCGGACCGGTCGGACCGTGAACCGGTGGGTAAGCCGGTTCGAGCCAACATTTGGATCGGCCATGCAGTTAACTCGGTCAAACCCGGTCAAAACCGTAAAAACCGGTGACTCGGCCGAGTCATGGGTCAGACCGGAATACACAATTACTGAGACGATGGACATAGACTCTAGTTTTGTGTTCTCTGCCCATGGTGCTAACAACCTACAATCAACCAAAAAACCACCCGATCCTCCCAAGCCTACACCCCAAAAGCCATCCTTTCGTGACAAATTGCTAGGACCTTCACAAGAAATCCCTACCCGTGAAAAACAAGACATGATTGAGAATAAGCTTGTTCGCATAGAGCTGGAAGACGGTAACCGCCTCTTACCTAAAATCTATCTTGAGCCACAAGTGTTCCAAGAACAATGCACTCCTTGGAAAGACGCATTGAAAATTTGGAAGCTTCAAGGAGGATTCAAAATTATGGATAACGATAATGGCTTCTATATGGTGAAATTTGATCAAGCTGCAGACAAGGAGAAAGTCATCACCGGCGGACCTTGGTTAATATTTGATCATTGCTTGGCTGTTACACACTGGTCACCGGAATTCGCATCACCAAACGCCAAAGTTGAACGCACGGTAGTATGGGTACGTTTTCCTGGACTTAACCTTGTTTACTATGATGAGAGCTTCCTGCTTGCTATGGCATCCGCGATTGGTCGGCCCATAAAAGTCGACACAAACACTCTGAGAGTTGAAAGAGGCAAATTTACTAGAGTTTGTGTTGAAGTCGATCTCACAGTTCCGGTGGTGGGGAAAATATGGGTTAACGGTCACTGGTACAAAGTACAATATGAAGGATTACACCTAATCTACCAATTGTTTGTAATGGAAGCTCTCCTAGATACTTCAATCCTCTCTTGGAATATCAGAGGGGCCCAAAACAGCAATGGTAAAAGGCAACTGAAAGATATGATAAGAAAATACATGCCTTCCTTTCTAGCTATCTACGAAACTCATGTCACTTTTGCAAGATTATCCACATTCTGGAATAATATTGGTTACACTCCTGAACATATCATAGAAGCCAATGGCCATTCAGGGGGCATCTGGCTCCTCAAACACACTGCAGAAGCTACTACTGCCTCTATAATTGACTCTAATCATTATTCCATAACCTTCAGTTTAAGCCTGAGAGGTGCAACTACTACTTGCACCTGCGTGTATGCAAGCCCTAACCCCATTTTGCGTCAAACCTTCTGGAACTACCTCACTAACCTCAACCAAACTATTACTGGACCTTGGATGTTAATTGGAGATTTCCATGAAACTATTCTCCCTAGTGAGCAAAGAGGAGGGTTGTTCAATCACTCAAGAGCTTCCTACTTCTCCAACTTTATGCTCAATTGCAACCTACTGGATCTTACTACAACAGGAGGGCGGTTCACTTGGCACCGCAATCACAATGGCCTCCGTATTCTCTCCAAGAAGCTTGATAGAGGTGTTGCTAATATCAACTGGCAGCTTTCCTTCCCTGAAGCATTTGTTGAAGTTCTCTGCAGGTCACACTCAGATCATAATCCTCTCCTTCTCCGGTTTGGTGGCCTCCCTCTTGCAAGGGGCCCTAGACCATTTCGTTTTGAAGCAGCCTGGATTGACCATGAGGAGTATGCAGATTTGGTAAGTAGAGCTTGGAATTCTTCTAACCATAATACTATTGTGCTCTCAATAAAGTTAGAGAAAATTCCATTTCTTTCAATAAAGAAGTGTTTGGCAACATATTTCAAAGAAAGACGCACATAG

Protein sequence

>MsG0580028577.01.T01

MIPQFHWGKTARPNINSIRGFSVVDEIKATVDKVCKGPVVSCADILATAARDSVAILGRSTIFLQCAIGRRDARTASRAAANANLPSPTFNFSQLISNFKSQGLNVKDLVALSGGHTIGKTCPRNGGDNNLTPLDFTPTRVENTYYRDLLYKRGVLHSDQQLFKGQGSESDKFGAIYHSFQTRLGPAGRTGRTVNRWVSRFEPTFGSAMQLTRSNPVKTVKTGDSAESWVRPEYTITETMDIDSSFVFSAHGANNLQSTKKPPDPPKPTPQKPSFRDKLLGPSQEIPTREKQDMIENKLVRIELEDGNRLLPKIYLEPQVFQEQCTPWKDALKIWKLQGGFKIMDNDNGFYMVKFDQAADKEKVITGGPWLIFDHCLAVTHWSPEFASPNAKVERTVVWVRFPGLNLVYYDESFLLAMASAIGRPIKVDTNTLRVERGKFTRVCVEVDLTVPVVGKIWVNGHWYKVQYEGLHLIYQLFVMEALLDTSILSWNIRGAQNSNGKRQLKDMIRKYMPSFLAIYETHVTFARLSTFWNNIGYTPEHIIEANGHSGGIWLLKHTAEATTASIIDSNHYSITFSLSLRGATTTCTCVYASPNPILRQTFWNYLTNLNQTITGPWMLIGDFHETILPSEQRGGLFNHSRASYFSNFMLNCNLLDLTTTGGRFTWHRNHNGLRILSKKLDRGVANINWQLSFPEAFVEVLCRSHSDHNPLLLRFGGLPLARGPRPFRFEAAWIDHEEYADLVSRAWNSSNHNTIVLSIKLEKIPFLSIKKCLATYFKERRT*