Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038318.01.T01 | XP_013458155.1 | 97.494 | 399 | 10 | 0 | 1 | 399 | 56 | 454 | 0 | 795 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038318.01.T01 | P0DO21 | 47.619 | 399 | 184 | 11 | 3 | 396 | 55 | 433 | 1.11E-109 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048506.01 | MsG0780038318.01 | 0.807512 | 4.875841e-50 | 2.721052e-47 |
| MsG0080048507.01 | MsG0780038318.01 | 0.811344 | 7.338174e-51 | 4.530846e-48 |
| MsG0180000028.01 | MsG0780038318.01 | 0.824870 | 6.385968e-54 | 5.727565e-51 |
| MsG0180001029.01 | MsG0780038318.01 | 0.816445 | 5.509622e-52 | 3.904526e-49 |
| MsG0180001548.01 | MsG0780038318.01 | -0.828255 | 9.952391e-55 | 9.839318e-52 |
| MsG0180002700.01 | MsG0780038318.01 | -0.803192 | 3.920391e-49 | 1.957687e-46 |
| MsG0180003600.01 | MsG0780038318.01 | 0.844952 | 5.496284e-59 | 9.018582e-56 |
| MsG0180004880.01 | MsG0780038318.01 | 0.808062 | 3.723881e-50 | 2.108245e-47 |
| MsG0180005059.01 | MsG0780038318.01 | 0.807388 | 5.178749e-50 | 2.880803e-47 |
| MsG0180005082.01 | MsG0780038318.01 | 0.815689 | 8.130011e-52 | 5.644092e-49 |
| MsG0180005130.01 | MsG0780038318.01 | 0.857292 | 1.803269e-62 | 4.428360e-59 |
| MsG0180005143.01 | MsG0780038318.01 | 0.855474 | 6.159127e-62 | 1.423743e-58 |
| MsG0180006195.01 | MsG0780038318.01 | 0.853005 | 3.180507e-61 | 6.772249e-58 |
| MsG0180006253.01 | MsG0780038318.01 | 0.815857 | 7.455857e-52 | 5.199581e-49 |
| MsG0280011110.01 | MsG0780038318.01 | 0.828450 | 8.930072e-55 | 8.879738e-52 |
| MsG0280011128.01 | MsG0780038318.01 | 0.816544 | 5.235001e-52 | 3.720109e-49 |
| MsG0380012222.01 | MsG0780038318.01 | 0.826667 | 2.392885e-54 | 2.258781e-51 |
| MsG0680031200.01 | MsG0780038318.01 | 0.814686 | 1.358029e-51 | 9.173149e-49 |
| MsG0680032932.01 | MsG0780038318.01 | 0.823829 | 1.121778e-53 | 9.766859e-51 |
| MsG0680034238.01 | MsG0780038318.01 | 0.830703 | 2.529664e-55 | 2.686104e-52 |
| MsG0680034759.01 | MsG0780038318.01 | 0.826620 | 2.455404e-54 | 2.314643e-51 |
| MsG0680034981.01 | MsG0780038318.01 | 0.810341 | 1.209404e-50 | 7.271368e-48 |
| MsG0680035344.01 | MsG0780038318.01 | 0.812930 | 3.307889e-51 | 2.130593e-48 |
| MsG0480018693.01 | MsG0780038318.01 | 0.809096 | 2.239834e-50 | 1.303155e-47 |
| MsG0480019817.01 | MsG0780038318.01 | 0.819224 | 1.299202e-52 | 9.938225e-50 |
| MsG0480019818.01 | MsG0780038318.01 | 0.804321 | 2.284582e-49 | 1.174402e-46 |
| MsG0480020473.01 | MsG0780038318.01 | -0.801956 | 7.047841e-49 | 3.410190e-46 |
| MsG0480020595.01 | MsG0780038318.01 | 0.802070 | 6.680485e-49 | 3.241888e-46 |
| MsG0480020797.01 | MsG0780038318.01 | 0.807687 | 4.475998e-50 | 2.509189e-47 |
| MsG0480021091.01 | MsG0780038318.01 | 0.882810 | 7.621633e-71 | 4.710659e-67 |
| MsG0480021230.01 | MsG0780038318.01 | 0.827077 | 1.909239e-54 | 1.823918e-51 |
| MsG0480022918.01 | MsG0780038318.01 | -0.807641 | 4.576510e-50 | 2.562473e-47 |
| MsG0480023348.01 | MsG0780038318.01 | 0.801828 | 7.488643e-49 | 3.611827e-46 |
| MsG0480023406.01 | MsG0780038318.01 | -0.803671 | 3.118976e-49 | 1.576717e-46 |
| MsG0580024535.01 | MsG0780038318.01 | 0.833011 | 6.813959e-56 | 7.747787e-53 |
| MsG0580025024.01 | MsG0780038318.01 | 0.807241 | 5.564772e-50 | 3.083694e-47 |
| MsG0380016490.01 | MsG0780038318.01 | 0.826047 | 3.361794e-54 | 3.117842e-51 |
| MsG0380017901.01 | MsG0780038318.01 | 0.809903 | 1.503231e-50 | 8.935285e-48 |
| MsG0480018337.01 | MsG0780038318.01 | -0.800916 | 1.151135e-48 | 5.425700e-46 |
| MsG0580026521.01 | MsG0780038318.01 | 0.815778 | 7.763435e-52 | 5.403078e-49 |
| MsG0580028118.01 | MsG0780038318.01 | 0.800285 | 1.548700e-48 | 7.183353e-46 |
| MsG0580028577.01 | MsG0780038318.01 | 0.804768 | 1.843172e-49 | 9.585219e-47 |
| MsG0280006553.01 | MsG0780038318.01 | -0.803574 | 3.266384e-49 | 1.647293e-46 |
| MsG0280007513.01 | MsG0780038318.01 | 0.852407 | 4.710144e-61 | 9.832210e-58 |
| MsG0280007677.01 | MsG0780038318.01 | 0.838972 | 2.092485e-57 | 2.848619e-54 |
| MsG0280007689.01 | MsG0780038318.01 | 0.805567 | 1.254363e-49 | 6.658063e-47 |
| MsG0280007910.01 | MsG0780038318.01 | 0.813564 | 2.401245e-51 | 1.573494e-48 |
| MsG0280009436.01 | MsG0780038318.01 | -0.805790 | 1.126112e-49 | 6.012040e-47 |
| MsG0280010270.01 | MsG0780038318.01 | 0.853560 | 2.204128e-61 | 4.782096e-58 |
| MsG0780036260.01 | MsG0780038318.01 | 0.817497 | 3.197893e-52 | 2.332740e-49 |
| MsG0780036835.01 | MsG0780038318.01 | 0.824079 | 9.804339e-54 | 8.595787e-51 |
| MsG0780037052.01 | MsG0780038318.01 | 0.837946 | 3.850936e-57 | 5.081152e-54 |
| MsG0780038318.01 | MsG0780039686.01 | 0.808729 | 2.684297e-50 | 1.546451e-47 |
| MsG0780038318.01 | MsG0780040716.01 | 0.813369 | 2.650620e-51 | 1.727792e-48 |
| MsG0780038318.01 | MsG0880042086.01 | -0.803806 | 2.924459e-49 | 1.483547e-46 |
| MsG0780038318.01 | MsG0880042415.01 | -0.810109 | 1.357003e-50 | 8.109949e-48 |
| MsG0780038318.01 | MsG0880043107.01 | -0.806354 | 8.566439e-50 | 4.639623e-47 |
| MsG0780038318.01 | MsG0880044001.01 | 0.845390 | 4.183340e-59 | 6.960859e-56 |
| MsG0780038318.01 | MsG0880044028.01 | 0.866070 | 3.730035e-65 | 1.240846e-61 |
| MsG0780038318.01 | MsG0880044712.01 | 0.822566 | 2.211834e-53 | 1.858221e-50 |
| MsG0780038318.01 | MsG0880045801.01 | 0.872934 | 2.171709e-67 | 9.251998e-64 |
| MsG0780038318.01 | MsG0880046399.01 | 0.810390 | 1.180232e-50 | 7.105053e-48 |
| MsG0780038318.01 | MsG0880046408.01 | -0.809467 | 1.865651e-50 | 1.096205e-47 |
| MsG0780038318.01 | MsG0880046434.01 | 0.876653 | 1.177208e-68 | 5.753073e-65 |
| MsG0780038318.01 | MsG0880046870.01 | 0.806383 | 8.446680e-50 | 4.578142e-47 |
| MsG0780038318.01 | MsG0880046946.01 | 0.871508 | 6.478056e-67 | 2.619986e-63 |
| MsG0780038318.01 | MsG0880047091.01 | 0.800776 | 1.229993e-48 | 5.776288e-46 |
| MsG0780038318.01 | MsG0880047312.01 | 0.804276 | 2.334465e-49 | 1.198649e-46 |
| MsG0780038318.01 | MsG0880047383.01 | 0.803462 | 3.446925e-49 | 1.733203e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038318.01.T01 | MTR_4g117090 | 97.494 | 399 | 10 | 0 | 1 | 399 | 56 | 454 | 0.0 | 795 |
| MsG0780038318.01.T01 | MTR_2g022370 | 51.899 | 395 | 160 | 10 | 4 | 395 | 50 | 417 | 4.00e-111 | 333 |
| MsG0780038318.01.T01 | MTR_2g022430 | 48.371 | 399 | 172 | 10 | 4 | 395 | 50 | 421 | 1.11e-109 | 328 |
| MsG0780038318.01.T01 | MTR_2g022380 | 50.877 | 399 | 162 | 11 | 4 | 395 | 50 | 421 | 1.82e-108 | 326 |
| MsG0780038318.01.T01 | MTR_2g022320 | 49.132 | 403 | 169 | 10 | 1 | 395 | 43 | 417 | 5.35e-108 | 324 |
| MsG0780038318.01.T01 | MTR_1g072420 | 46.348 | 397 | 188 | 9 | 3 | 396 | 55 | 429 | 1.85e-106 | 321 |
| MsG0780038318.01.T01 | MTR_2g022350 | 49.246 | 398 | 170 | 9 | 4 | 395 | 50 | 421 | 5.30e-106 | 319 |
| MsG0780038318.01.T01 | MTR_2g022490 | 48.010 | 402 | 174 | 9 | 1 | 394 | 50 | 424 | 7.43e-106 | 319 |
| MsG0780038318.01.T01 | MTR_2g022480 | 48.387 | 403 | 171 | 10 | 1 | 394 | 56 | 430 | 1.83e-105 | 318 |
| MsG0780038318.01.T01 | MTR_2g022450 | 44.472 | 398 | 195 | 11 | 3 | 396 | 49 | 424 | 1.68e-102 | 310 |
| MsG0780038318.01.T01 | MTR_1g072450 | 44.697 | 396 | 195 | 8 | 3 | 396 | 55 | 428 | 1.78e-102 | 310 |
| MsG0780038318.01.T01 | MTR_1g072380 | 42.145 | 401 | 205 | 8 | 3 | 396 | 65 | 445 | 3.94e-96 | 295 |
| MsG0780038318.01.T01 | MTR_1g093100 | 44.390 | 410 | 178 | 13 | 3 | 396 | 55 | 430 | 2.21e-92 | 285 |
| MsG0780038318.01.T01 | MTR_2g022460 | 34.804 | 408 | 208 | 10 | 2 | 397 | 47 | 408 | 4.25e-64 | 211 |
| MsG0780038318.01.T01 | MTR_7g113790 | 33.415 | 407 | 229 | 14 | 3 | 399 | 59 | 433 | 8.29e-60 | 200 |
| MsG0780038318.01.T01 | MTR_0252s0030 | 49.545 | 220 | 97 | 5 | 147 | 364 | 140 | 347 | 6.04e-56 | 188 |
| MsG0780038318.01.T01 | MTR_1g093130 | 37.059 | 170 | 87 | 3 | 193 | 361 | 5 | 155 | 5.75e-23 | 95.5 |
| MsG0780038318.01.T01 | MTR_2g022330 | 64.912 | 57 | 16 | 1 | 341 | 397 | 34 | 86 | 2.45e-14 | 68.6 |
| MsG0780038318.01.T01 | MTR_4g100990 | 24.700 | 417 | 249 | 19 | 1 | 383 | 81 | 466 | 4.39e-14 | 73.9 |
| MsG0780038318.01.T01 | MTR_3g065160 | 23.399 | 406 | 244 | 13 | 1 | 396 | 81 | 429 | 3.80e-13 | 70.9 |
| MsG0780038318.01.T01 | MTR_3g053710 | 24.752 | 404 | 216 | 13 | 1 | 382 | 124 | 461 | 2.26e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0780038318.01.T01 | AT1G03220 | 44.472 | 398 | 195 | 10 | 3 | 396 | 52 | 427 | 4.78e-96 | 294 |
| MsG0780038318.01.T01 | AT1G03230 | 42.857 | 399 | 200 | 11 | 3 | 396 | 53 | 428 | 2.20e-91 | 282 |
| MsG0780038318.01.T01 | AT5G19110 | 35.101 | 396 | 205 | 13 | 7 | 396 | 52 | 401 | 8.96e-57 | 191 |
| MsG0780038318.01.T01 | AT5G19110 | 35.101 | 396 | 205 | 13 | 7 | 396 | 88 | 437 | 1.88e-56 | 192 |
| MsG0780038318.01.T01 | AT5G19100 | 37.887 | 388 | 165 | 12 | 19 | 397 | 67 | 387 | 3.80e-53 | 182 |
| MsG0780038318.01.T01 | AT5G48430 | 38.267 | 277 | 145 | 7 | 122 | 397 | 152 | 403 | 1.82e-45 | 162 |
| MsG0780038318.01.T01 | AT5G19120 | 32.376 | 383 | 200 | 13 | 1 | 382 | 51 | 375 | 1.29e-40 | 148 |
| MsG0780038318.01.T01 | AT3G25700 | 24.378 | 402 | 239 | 17 | 1 | 383 | 90 | 445 | 2.77e-13 | 71.6 |
| MsG0780038318.01.T01 | AT3G54400 | 22.637 | 402 | 217 | 14 | 1 | 383 | 94 | 420 | 4.28e-12 | 67.8 |
| MsG0780038318.01.T01 | AT1G01300 | 24.874 | 398 | 219 | 17 | 1 | 383 | 148 | 480 | 5.09e-12 | 67.8 |
Find 112 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGGGTGTATTTAAGAAATT+TGG | 0.163767 | 7:-44084677 | None:intergenic |
| TGGTGGGGATCCATATAATT+TGG | 0.206282 | 7:+44084633 | MsG0780038318.01.T01:CDS |
| CCTTGAACGCCAAATTTATC+TGG | 0.216108 | 7:-44084442 | None:intergenic |
| AAGCAAGTTGTTCCCACTTT+AGG | 0.217742 | 7:+44085265 | MsG0780038318.01.T01:CDS |
| CAGGCCCAAGCCCATTCTTT+TGG | 0.218989 | 7:-44084597 | None:intergenic |
| TTCAACCGAGTACTTTATTA+AGG | 0.255410 | 7:+44084747 | MsG0780038318.01.T01:CDS |
| TCAGCAACTTCAATTATTAT+TGG | 0.283411 | 7:+44085159 | MsG0780038318.01.T01:CDS |
| TTATTAGAGCCCAAATTATA+TGG | 0.286906 | 7:-44084643 | None:intergenic |
| TATTAAGGTGAAGTCAATTA+AGG | 0.299518 | 7:+44084762 | MsG0780038318.01.T01:CDS |
| GATGTTGAATGGAGAATCTT+TGG | 0.313149 | 7:+44085057 | MsG0780038318.01.T01:CDS |
| CCAGATAAATTTGGCGTTCA+AGG | 0.327531 | 7:+44084442 | MsG0780038318.01.T01:CDS |
| GGTGGGGATCCATATAATTT+GGG | 0.329517 | 7:+44084634 | MsG0780038318.01.T01:CDS |
| AAATCAATTGTAGGCACATT+TGG | 0.330873 | 7:-44085021 | None:intergenic |
| AGCAAGTTGTTCCCACTTTA+GGG | 0.331628 | 7:+44085266 | MsG0780038318.01.T01:CDS |
| GTGAAAGCTGTTGCACCATT+TGG | 0.338406 | 7:+44084955 | MsG0780038318.01.T01:CDS |
| AAATGTGCCTACAATTGATT+TGG | 0.347296 | 7:+44085023 | MsG0780038318.01.T01:CDS |
| TGGTGCTAATTCAATGGTTA+AGG | 0.348036 | 7:+44085077 | MsG0780038318.01.T01:CDS |
| TACAATTGATTTGGTCTTGA+AGG | 0.354132 | 7:+44085032 | MsG0780038318.01.T01:CDS |
| GGGCCTGGGAGTCTGTTTGT+TGG | 0.367528 | 7:+44084613 | MsG0780038318.01.T01:CDS |
| GTTGTAAGTTGTGGAATTGT+AGG | 0.371830 | 7:-44084173 | None:intergenic |
| TATGTCAATGACAAGATCTA+AGG | 0.376279 | 7:-44084116 | None:intergenic |
| GCATTTCTTTGTACCACATT+GGG | 0.378833 | 7:-44084200 | None:intergenic |
| ACAAGTGTTGTTTGTGCATC+CGG | 0.384973 | 7:-44084275 | None:intergenic |
| TCTTTGTACCACATTGGGTT+GGG | 0.385124 | 7:-44084195 | None:intergenic |
| CAAAAGAATGGGCTTGGGCC+TGG | 0.386990 | 7:+44084598 | MsG0780038318.01.T01:CDS |
| GGCGTTCAAGGCTTTCTTCA+AGG | 0.387511 | 7:+44084454 | MsG0780038318.01.T01:CDS |
| TAGATCTTGTCATTGACATA+AGG | 0.401290 | 7:+44084119 | MsG0780038318.01.T01:CDS |
| ACTTCCCAAAAGAATGGGCT+TGG | 0.401719 | 7:+44084592 | MsG0780038318.01.T01:CDS |
| ACCAATCATCCTTTCAAAAC+CGG | 0.404107 | 7:+44084256 | MsG0780038318.01.T01:CDS |
| CCTTCAACTTCCCAAAAGAA+TGG | 0.409321 | 7:+44084586 | MsG0780038318.01.T01:CDS |
| AATCTTTGGTGCTAATTCAA+TGG | 0.414472 | 7:+44085071 | MsG0780038318.01.T01:CDS |
| TATTATTGGTGGGCATCAAT+TGG | 0.420251 | 7:+44085173 | MsG0780038318.01.T01:CDS |
| CTGGGAGTCTGTTTGTTGGT+GGG | 0.420565 | 7:+44084617 | MsG0780038318.01.T01:CDS |
| TGCATTTCTTTGTACCACAT+TGG | 0.420623 | 7:-44084201 | None:intergenic |
| ACAATTAGCAAGAGTGTTAC+CGG | 0.421303 | 7:+44084997 | MsG0780038318.01.T01:CDS |
| AAAAGAATGGGCTTGGGCCT+GGG | 0.422617 | 7:+44084599 | MsG0780038318.01.T01:CDS |
| AGATCTTGTCATTGACATAA+GGG | 0.432329 | 7:+44084120 | MsG0780038318.01.T01:CDS |
| TTCTTTGTACCACATTGGGT+TGG | 0.435161 | 7:-44084196 | None:intergenic |
| GATCTTGTTTCCTCAAAACT+TGG | 0.447946 | 7:+44085216 | MsG0780038318.01.T01:CDS |
| TTAATAAAGTACTCGGTTGA+AGG | 0.448175 | 7:-44084745 | None:intergenic |
| ACAAGATCTAAGGGCACTGC+AGG | 0.448519 | 7:-44084106 | None:intergenic |
| CCTGGGAGTCTGTTTGTTGG+TGG | 0.450280 | 7:+44084616 | MsG0780038318.01.T01:CDS |
| TTCACAAAAGCATTCAAAAG+TGG | 0.451413 | 7:-44084904 | None:intergenic |
| CTGCGACGGTTAGTAATAAG+AGG | 0.452299 | 7:-44084697 | None:intergenic |
| CTTCAACTTCCCAAAAGAAT+GGG | 0.455541 | 7:+44084587 | MsG0780038318.01.T01:CDS |
| AATGAAAATGTGTTATGTCT+TGG | 0.457270 | 7:+44085102 | MsG0780038318.01.T01:CDS |
| GAAGGAAAGTTATCAAATAT+AGG | 0.461915 | 7:-44084727 | None:intergenic |
| GTTGAACCGTTCAACCCATT+CGG | 0.462621 | 7:+44084301 | MsG0780038318.01.T01:CDS |
| AGGAATCACTGTGCTGAGTT+TGG | 0.465877 | 7:-44084851 | None:intergenic |
| CGCGCACGTTGGTAACTCTT+CGG | 0.471565 | 7:-44084390 | None:intergenic |
| GCAACTTCAATTATTATTGG+TGG | 0.473806 | 7:+44085162 | MsG0780038318.01.T01:CDS |
| TTGCTTTCTATTAACAAACT+AGG | 0.477513 | 7:+44084817 | MsG0780038318.01.T01:CDS |
| TTCAAGACCAAATCAATTGT+AGG | 0.479612 | 7:-44085030 | None:intergenic |
| TGTGTGTACCCAGATAAATT+TGG | 0.484387 | 7:+44084433 | MsG0780038318.01.T01:CDS |
| CTTCCCAAAAGAATGGGCTT+GGG | 0.490626 | 7:+44084593 | MsG0780038318.01.T01:CDS |
| CAACTTCAATTATTATTGGT+GGG | 0.496037 | 7:+44085163 | MsG0780038318.01.T01:CDS |
| ATTACTAACCGTCGCAGTAC+TGG | 0.497591 | 7:+44084703 | MsG0780038318.01.T01:CDS |
| GAATCAAAACATGCTCCAAA+TGG | 0.497809 | 7:-44084970 | None:intergenic |
| AGTCTTAAAATCCCCTAAAG+TGG | 0.503011 | 7:-44085278 | None:intergenic |
| ACAATTGATTTGGTCTTGAA+GGG | 0.504755 | 7:+44085033 | MsG0780038318.01.T01:CDS |
| TTCGGTGGATTCTTTGTGAG+TGG | 0.511303 | 7:+44084319 | MsG0780038318.01.T01:CDS |
| ATTGGTACAATCAATGCAAC+CGG | 0.512419 | 7:-44084239 | None:intergenic |
| AATTGTAGGCACATTTGGTC+CGG | 0.513751 | 7:-44085016 | None:intergenic |
| AATCTAGTTGCGAATTGTGT+TGG | 0.514737 | 7:-44084532 | None:intergenic |
| TGGGAGTCTGTTTGTTGGTG+GGG | 0.521130 | 7:+44084618 | MsG0780038318.01.T01:CDS |
| TGTCTTGGATTTGTTGATGC+GGG | 0.521708 | 7:+44085117 | MsG0780038318.01.T01:CDS |
| GTAAACATAGTGTAAACTTA+CGG | 0.535570 | 7:-44084564 | None:intergenic |
| TGCAAGCAAGCTAGAGGCAC+CGG | 0.538614 | 7:+44084220 | MsG0780038318.01.T01:CDS |
| TCTATTAACAAACTAGGAGA+AGG | 0.538655 | 7:+44084823 | MsG0780038318.01.T01:CDS |
| TCACAAAGAATCCACCGAAT+GGG | 0.539095 | 7:-44084315 | None:intergenic |
| GTCTTAAAATCCCCTAAAGT+GGG | 0.544065 | 7:-44085277 | None:intergenic |
| CTTGAACGCCAAATTTATCT+GGG | 0.544277 | 7:-44084441 | None:intergenic |
| ACATAAGGGAGCGTTTCCTA+TGG | 0.545597 | 7:+44084134 | MsG0780038318.01.T01:CDS |
| CTTCACCTTAATAAAGTACT+CGG | 0.547033 | 7:-44084752 | None:intergenic |
| AATCATCACATTCAAACCAT+AGG | 0.553313 | 7:-44084150 | None:intergenic |
| TTGGGTTGGGTTGTAAGTTG+TGG | 0.559544 | 7:-44084182 | None:intergenic |
| TGATGCGGGTTCTGAGGAAG+TGG | 0.561699 | 7:+44085131 | MsG0780038318.01.T01:CDS |
| CCACCAACAAACAGACTCCC+AGG | 0.571791 | 7:-44084616 | None:intergenic |
| ATAATAATTGAAGTTGCTGA+TGG | 0.586341 | 7:-44085156 | None:intergenic |
| CTTTCTTCAAGGTCTAAGCA+AGG | 0.587331 | 7:+44084465 | MsG0780038318.01.T01:CDS |
| ATGTCAATGACAAGATCTAA+GGG | 0.588940 | 7:-44084115 | None:intergenic |
| AATCCACCGAATGGGTTGAA+CGG | 0.593083 | 7:-44084307 | None:intergenic |
| CGGCCATCGCTAGTGATACG+TGG | 0.593354 | 7:-44084370 | None:intergenic |
| CAATTGATTTGGTCTTGAAG+GGG | 0.594295 | 7:+44085034 | MsG0780038318.01.T01:CDS |
| AATTGATTTGGTCTTGAAGG+GGG | 0.596401 | 7:+44085035 | MsG0780038318.01.T01:CDS |
| GAACCGTTCAACCCATTCGG+TGG | 0.602812 | 7:+44084304 | MsG0780038318.01.T01:CDS |
| TGCTTTGCTGAGTAAAAGTG+AGG | 0.606865 | 7:-44085247 | None:intergenic |
| TTTCTTCAAGGTCTAAGCAA+GGG | 0.612379 | 7:+44084466 | MsG0780038318.01.T01:CDS |
| CTCACAAAGAATCCACCGAA+TGG | 0.614046 | 7:-44084316 | None:intergenic |
| ATCGCTAGTGATACGTGGGA+AGG | 0.614330 | 7:-44084365 | None:intergenic |
| CAAGATCTAAGGGCACTGCA+GGG | 0.615487 | 7:-44084105 | None:intergenic |
| ATGTCTTGGATTTGTTGATG+CGG | 0.620309 | 7:+44085116 | MsG0780038318.01.T01:CDS |
| AAGATCTAAGGGCACTGCAG+GGG | 0.622294 | 7:-44084104 | None:intergenic |
| AAGAAATGCAAGCAAGCTAG+AGG | 0.624549 | 7:+44084214 | MsG0780038318.01.T01:CDS |
| ATTAACAAACTAGGAGAAGG+TGG | 0.633136 | 7:+44084826 | MsG0780038318.01.T01:CDS |
| TGCGACGGTTAGTAATAAGA+GGG | 0.636681 | 7:-44084696 | None:intergenic |
| GAAACGTGGCACGCGCACGT+TGG | 0.639318 | 7:-44084401 | None:intergenic |
| TTCCCACGTATCACTAGCGA+TGG | 0.641396 | 7:+44084367 | MsG0780038318.01.T01:CDS |
| TGTGAGTGGAGACGTAGGAG+AGG | 0.641528 | 7:+44084333 | MsG0780038318.01.T01:CDS |
| ATTTGTTGATGCGGGTTCTG+AGG | 0.643464 | 7:+44085125 | MsG0780038318.01.T01:CDS |
| GGCCATCGCTAGTGATACGT+GGG | 0.647935 | 7:-44084369 | None:intergenic |
| TTCTTTGTGAGTGGAGACGT+AGG | 0.651013 | 7:+44084328 | MsG0780038318.01.T01:CDS |
| TCAATTGGAAGATAATCTTG+TGG | 0.652504 | 7:+44085188 | MsG0780038318.01.T01:CDS |
| GCAAGTTGTTCCCACTTTAG+GGG | 0.655905 | 7:+44085267 | MsG0780038318.01.T01:CDS |
| ATATAGGACCAGTACTGCGA+CGG | 0.671660 | 7:-44084711 | None:intergenic |
| ACTTACAACCCAACCCAATG+TGG | 0.685608 | 7:+44084187 | MsG0780038318.01.T01:CDS |
| GATGCGGGTTCTGAGGAAGT+GGG | 0.693306 | 7:+44085132 | MsG0780038318.01.T01:CDS |
| GGATGCACAAACAACACTTG+TGG | 0.695025 | 7:+44084277 | MsG0780038318.01.T01:CDS |
| GAAGTGTGTAATGTTGTGTG+AGG | 0.719466 | 7:-44084871 | None:intergenic |
| GCGACGGTTAGTAATAAGAG+GGG | 0.739886 | 7:-44084695 | None:intergenic |
| ACACATGATGAAATGAAACG+TGG | 0.754331 | 7:-44084415 | None:intergenic |
| TTTGTTAATAGAAAGCAACG+TGG | 0.831722 | 7:-44084812 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AATGAAAATGTGTTATGTCT+TGG | + | Chr7:44085102-44085121 | MsG0780038318.01.T01:CDS | 25.0% |
| ! | ATAATAATTGAAGTTGCTGA+TGG | - | Chr7:44085159-44085178 | None:intergenic | 25.0% |
| ! | CAACTTCAATTATTATTGGT+GGG | + | Chr7:44085163-44085182 | MsG0780038318.01.T01:CDS | 25.0% |
| ! | GAAGGAAAGTTATCAAATAT+AGG | - | Chr7:44084730-44084749 | None:intergenic | 25.0% |
| ! | GTAAACATAGTGTAAACTTA+CGG | - | Chr7:44084567-44084586 | None:intergenic | 25.0% |
| ! | TATTAAGGTGAAGTCAATTA+AGG | + | Chr7:44084762-44084781 | MsG0780038318.01.T01:CDS | 25.0% |
| ! | TCAGCAACTTCAATTATTAT+TGG | + | Chr7:44085159-44085178 | MsG0780038318.01.T01:CDS | 25.0% |
| ! | TTATTAGAGCCCAAATTATA+TGG | - | Chr7:44084646-44084665 | None:intergenic | 25.0% |
| ! | TTGCTTTCTATTAACAAACT+AGG | + | Chr7:44084817-44084836 | MsG0780038318.01.T01:CDS | 25.0% |
| AAATCAATTGTAGGCACATT+TGG | - | Chr7:44085024-44085043 | None:intergenic | 30.0% | |
| AAATGTGCCTACAATTGATT+TGG | + | Chr7:44085023-44085042 | MsG0780038318.01.T01:CDS | 30.0% | |
| AATCATCACATTCAAACCAT+AGG | - | Chr7:44084153-44084172 | None:intergenic | 30.0% | |
| AGATCTTGTCATTGACATAA+GGG | + | Chr7:44084120-44084139 | MsG0780038318.01.T01:CDS | 30.0% | |
| ATGTCAATGACAAGATCTAA+GGG | - | Chr7:44084118-44084137 | None:intergenic | 30.0% | |
| GCAACTTCAATTATTATTGG+TGG | + | Chr7:44085162-44085181 | MsG0780038318.01.T01:CDS | 30.0% | |
| TAGATCTTGTCATTGACATA+AGG | + | Chr7:44084119-44084138 | MsG0780038318.01.T01:CDS | 30.0% | |
| TATGTCAATGACAAGATCTA+AGG | - | Chr7:44084119-44084138 | None:intergenic | 30.0% | |
| TCAATTGGAAGATAATCTTG+TGG | + | Chr7:44085188-44085207 | MsG0780038318.01.T01:CDS | 30.0% | |
| TCTATTAACAAACTAGGAGA+AGG | + | Chr7:44084823-44084842 | MsG0780038318.01.T01:CDS | 30.0% | |
| TTCAACCGAGTACTTTATTA+AGG | + | Chr7:44084747-44084766 | MsG0780038318.01.T01:CDS | 30.0% | |
| TTCAAGACCAAATCAATTGT+AGG | - | Chr7:44085033-44085052 | None:intergenic | 30.0% | |
| TTTGTTAATAGAAAGCAACG+TGG | - | Chr7:44084815-44084834 | None:intergenic | 30.0% | |
| ! | AGGGGTGTATTTAAGAAATT+TGG | - | Chr7:44084680-44084699 | None:intergenic | 30.0% |
| ! | CTTCACCTTAATAAAGTACT+CGG | - | Chr7:44084755-44084774 | None:intergenic | 30.0% |
| ! | TTAATAAAGTACTCGGTTGA+AGG | - | Chr7:44084748-44084767 | None:intergenic | 30.0% |
| !! | AATCTTTGGTGCTAATTCAA+TGG | + | Chr7:44085071-44085090 | MsG0780038318.01.T01:CDS | 30.0% |
| !! | ACAATTGATTTGGTCTTGAA+GGG | + | Chr7:44085033-44085052 | MsG0780038318.01.T01:CDS | 30.0% |
| !! | TACAATTGATTTGGTCTTGA+AGG | + | Chr7:44085032-44085051 | MsG0780038318.01.T01:CDS | 30.0% |
| !! | TTCACAAAAGCATTCAAAAG+TGG | - | Chr7:44084907-44084926 | None:intergenic | 30.0% |
| AATCTAGTTGCGAATTGTGT+TGG | - | Chr7:44084535-44084554 | None:intergenic | 35.0% | |
| ACACATGATGAAATGAAACG+TGG | - | Chr7:44084418-44084437 | None:intergenic | 35.0% | |
| ACCAATCATCCTTTCAAAAC+CGG | + | Chr7:44084256-44084275 | MsG0780038318.01.T01:CDS | 35.0% | |
| ATTAACAAACTAGGAGAAGG+TGG | + | Chr7:44084826-44084845 | MsG0780038318.01.T01:CDS | 35.0% | |
| ATTGGTACAATCAATGCAAC+CGG | - | Chr7:44084242-44084261 | None:intergenic | 35.0% | |
| CTTCAACTTCCCAAAAGAAT+GGG | + | Chr7:44084587-44084606 | MsG0780038318.01.T01:CDS | 35.0% | |
| CTTGAACGCCAAATTTATCT+GGG | - | Chr7:44084444-44084463 | None:intergenic | 35.0% | |
| GAATCAAAACATGCTCCAAA+TGG | - | Chr7:44084973-44084992 | None:intergenic | 35.0% | |
| GATGTTGAATGGAGAATCTT+TGG | + | Chr7:44085057-44085076 | MsG0780038318.01.T01:CDS | 35.0% | |
| GCATTTCTTTGTACCACATT+GGG | - | Chr7:44084203-44084222 | None:intergenic | 35.0% | |
| GTTGTAAGTTGTGGAATTGT+AGG | - | Chr7:44084176-44084195 | None:intergenic | 35.0% | |
| TGCATTTCTTTGTACCACAT+TGG | - | Chr7:44084204-44084223 | None:intergenic | 35.0% | |
| TGTGTGTACCCAGATAAATT+TGG | + | Chr7:44084433-44084452 | MsG0780038318.01.T01:CDS | 35.0% | |
| TTTCTTCAAGGTCTAAGCAA+GGG | + | Chr7:44084466-44084485 | MsG0780038318.01.T01:CDS | 35.0% | |
| ! | GATCTTGTTTCCTCAAAACT+TGG | + | Chr7:44085216-44085235 | MsG0780038318.01.T01:CDS | 35.0% |
| ! | TATTATTGGTGGGCATCAAT+TGG | + | Chr7:44085173-44085192 | MsG0780038318.01.T01:CDS | 35.0% |
| ! | TGGTGCTAATTCAATGGTTA+AGG | + | Chr7:44085077-44085096 | MsG0780038318.01.T01:CDS | 35.0% |
| !! | AAGGGTAAAAAAGGAGTGTT+AGG | + | Chr7:44084484-44084503 | MsG0780038318.01.T01:CDS | 35.0% |
| !! | AATTGATTTGGTCTTGAAGG+GGG | + | Chr7:44085035-44085054 | MsG0780038318.01.T01:CDS | 35.0% |
| !! | ACAATTAGCAAGAGTGTTAC+CGG | + | Chr7:44084997-44085016 | MsG0780038318.01.T01:CDS | 35.0% |
| !! | ATGTCTTGGATTTGTTGATG+CGG | + | Chr7:44085116-44085135 | MsG0780038318.01.T01:CDS | 35.0% |
| !! | CAATTGATTTGGTCTTGAAG+GGG | + | Chr7:44085034-44085053 | MsG0780038318.01.T01:CDS | 35.0% |
| AAGAAATGCAAGCAAGCTAG+AGG | + | Chr7:44084214-44084233 | MsG0780038318.01.T01:CDS | 40.0% | |
| AAGCAAGTTGTTCCCACTTT+AGG | + | Chr7:44085265-44085284 | MsG0780038318.01.T01:CDS | 40.0% | |
| AATTGTAGGCACATTTGGTC+CGG | - | Chr7:44085019-44085038 | None:intergenic | 40.0% | |
| AGCAAGTTGTTCCCACTTTA+GGG | + | Chr7:44085266-44085285 | MsG0780038318.01.T01:CDS | 40.0% | |
| CCAGATAAATTTGGCGTTCA+AGG | + | Chr7:44084442-44084461 | MsG0780038318.01.T01:CDS | 40.0% | |
| CCTTCAACTTCCCAAAAGAA+TGG | + | Chr7:44084586-44084605 | MsG0780038318.01.T01:CDS | 40.0% | |
| CCTTGAACGCCAAATTTATC+TGG | - | Chr7:44084445-44084464 | None:intergenic | 40.0% | |
| CTTTCTTCAAGGTCTAAGCA+AGG | + | Chr7:44084465-44084484 | MsG0780038318.01.T01:CDS | 40.0% | |
| GAAGTGTGTAATGTTGTGTG+AGG | - | Chr7:44084874-44084893 | None:intergenic | 40.0% | |
| GGTCTAAGCAAGGGTAAAAA+AGG | + | Chr7:44084475-44084494 | MsG0780038318.01.T01:CDS | 40.0% | |
| GGTGGGGATCCATATAATTT+GGG | + | Chr7:44084634-44084653 | MsG0780038318.01.T01:CDS | 40.0% | |
| TCACAAAGAATCCACCGAAT+GGG | - | Chr7:44084318-44084337 | None:intergenic | 40.0% | |
| TCTTTGTACCACATTGGGTT+GGG | - | Chr7:44084198-44084217 | None:intergenic | 40.0% | |
| TGCGACGGTTAGTAATAAGA+GGG | - | Chr7:44084699-44084718 | None:intergenic | 40.0% | |
| TGCTTTGCTGAGTAAAAGTG+AGG | - | Chr7:44085250-44085269 | None:intergenic | 40.0% | |
| TGGTGGGGATCCATATAATT+TGG | + | Chr7:44084633-44084652 | MsG0780038318.01.T01:CDS | 40.0% | |
| TTCTTTGTACCACATTGGGT+TGG | - | Chr7:44084199-44084218 | None:intergenic | 40.0% | |
| !! | ACAAGTGTTGTTTGTGCATC+CGG | - | Chr7:44084278-44084297 | None:intergenic | 40.0% |
| !! | CCATTCTTTTGGGAAGTTGA+AGG | - | Chr7:44084589-44084608 | None:intergenic | 40.0% |
| !! | TGTCTTGGATTTGTTGATGC+GGG | + | Chr7:44085117-44085136 | MsG0780038318.01.T01:CDS | 40.0% |
| !!! | TCCGGTTTTGAAAGGATGAT+TGG | - | Chr7:44084260-44084279 | None:intergenic | 40.0% |
| !!! | TTTGTGCATCCGGTTTTGAA+AGG | - | Chr7:44084268-44084287 | None:intergenic | 40.0% |
| ACTTACAACCCAACCCAATG+TGG | + | Chr7:44084187-44084206 | MsG0780038318.01.T01:CDS | 45.0% | |
| AGGAATCACTGTGCTGAGTT+TGG | - | Chr7:44084854-44084873 | None:intergenic | 45.0% | |
| ATATAGGACCAGTACTGCGA+CGG | - | Chr7:44084714-44084733 | None:intergenic | 45.0% | |
| ATTACTAACCGTCGCAGTAC+TGG | + | Chr7:44084703-44084722 | MsG0780038318.01.T01:CDS | 45.0% | |
| CTCACAAAGAATCCACCGAA+TGG | - | Chr7:44084319-44084338 | None:intergenic | 45.0% | |
| CTGCGACGGTTAGTAATAAG+AGG | - | Chr7:44084700-44084719 | None:intergenic | 45.0% | |
| GCAAGTTGTTCCCACTTTAG+GGG | + | Chr7:44085267-44085286 | MsG0780038318.01.T01:CDS | 45.0% | |
| GCGACGGTTAGTAATAAGAG+GGG | - | Chr7:44084698-44084717 | None:intergenic | 45.0% | |
| GGATGCACAAACAACACTTG+TGG | + | Chr7:44084277-44084296 | MsG0780038318.01.T01:CDS | 45.0% | |
| GTGAAAGCTGTTGCACCATT+TGG | + | Chr7:44084955-44084974 | MsG0780038318.01.T01:CDS | 45.0% | |
| GTTGAACCGTTCAACCCATT+CGG | + | Chr7:44084301-44084320 | MsG0780038318.01.T01:CDS | 45.0% | |
| TCTTGAAGGGGGATGTTGAA+TGG | + | Chr7:44085046-44085065 | MsG0780038318.01.T01:CDS | 45.0% | |
| TTCTTTGTGAGTGGAGACGT+AGG | + | Chr7:44084328-44084347 | MsG0780038318.01.T01:CDS | 45.0% | |
| ! | ACTTCCCAAAAGAATGGGCT+TGG | + | Chr7:44084592-44084611 | MsG0780038318.01.T01:CDS | 45.0% |
| ! | ATTTGTTGATGCGGGTTCTG+AGG | + | Chr7:44085125-44085144 | MsG0780038318.01.T01:CDS | 45.0% |
| ! | CTTCCCAAAAGAATGGGCTT+GGG | + | Chr7:44084593-44084612 | MsG0780038318.01.T01:CDS | 45.0% |
| ! | GGAGCTAAAGCCAAGTTTTG+AGG | - | Chr7:44085229-44085248 | None:intergenic | 45.0% |
| ! | TTCGGTGGATTCTTTGTGAG+TGG | + | Chr7:44084319-44084338 | MsG0780038318.01.T01:CDS | 45.0% |
| !! | AATCCACCGAATGGGTTGAA+CGG | - | Chr7:44084310-44084329 | None:intergenic | 45.0% |
| !! | ACATAAGGGAGCGTTTCCTA+TGG | + | Chr7:44084134-44084153 | MsG0780038318.01.T01:CDS | 45.0% |
| !! | TTGGGTTGGGTTGTAAGTTG+TGG | - | Chr7:44084185-44084204 | None:intergenic | 45.0% |
| ATCGCTAGTGATACGTGGGA+AGG | - | Chr7:44084368-44084387 | None:intergenic | 50.0% | |
| GGCGTTCAAGGCTTTCTTCA+AGG | + | Chr7:44084454-44084473 | MsG0780038318.01.T01:CDS | 50.0% | |
| TTCCCACGTATCACTAGCGA+TGG | + | Chr7:44084367-44084386 | MsG0780038318.01.T01:CDS | 50.0% | |
| ! | AAAAGAATGGGCTTGGGCCT+GGG | + | Chr7:44084599-44084618 | MsG0780038318.01.T01:CDS | 50.0% |
| ! | AGGCCCAAGCCCATTCTTTT+GGG | - | Chr7:44084599-44084618 | None:intergenic | 50.0% |
| ! | CTGGGAGTCTGTTTGTTGGT+GGG | + | Chr7:44084617-44084636 | MsG0780038318.01.T01:CDS | 50.0% |
| ! | TGGGAGTCTGTTTGTTGGTG+GGG | + | Chr7:44084618-44084637 | MsG0780038318.01.T01:CDS | 50.0% |
| !! | AAGATCTAAGGGCACTGCAG+GGG | - | Chr7:44084107-44084126 | None:intergenic | 50.0% |
| !! | ACAAGATCTAAGGGCACTGC+AGG | - | Chr7:44084109-44084128 | None:intergenic | 50.0% |
| !! | CAAGATCTAAGGGCACTGCA+GGG | - | Chr7:44084108-44084127 | None:intergenic | 50.0% |
| CCACCAACAAACAGACTCCC+AGG | - | Chr7:44084619-44084638 | None:intergenic | 55.0% | |
| GAACCGTTCAACCCATTCGG+TGG | + | Chr7:44084304-44084323 | MsG0780038318.01.T01:CDS | 55.0% | |
| GGCCATCGCTAGTGATACGT+GGG | - | Chr7:44084372-44084391 | None:intergenic | 55.0% | |
| TGTGAGTGGAGACGTAGGAG+AGG | + | Chr7:44084333-44084352 | MsG0780038318.01.T01:CDS | 55.0% | |
| ! | CAAAAGAATGGGCTTGGGCC+TGG | + | Chr7:44084598-44084617 | MsG0780038318.01.T01:CDS | 55.0% |
| ! | CAGGCCCAAGCCCATTCTTT+TGG | - | Chr7:44084600-44084619 | None:intergenic | 55.0% |
| ! | CCTGGGAGTCTGTTTGTTGG+TGG | + | Chr7:44084616-44084635 | MsG0780038318.01.T01:CDS | 55.0% |
| ! | TGCAAGCAAGCTAGAGGCAC+CGG | + | Chr7:44084220-44084239 | MsG0780038318.01.T01:CDS | 55.0% |
| !! | CGCGCACGTTGGTAACTCTT+CGG | - | Chr7:44084393-44084412 | None:intergenic | 55.0% |
| !! | GATGCGGGTTCTGAGGAAGT+GGG | + | Chr7:44085132-44085151 | MsG0780038318.01.T01:CDS | 55.0% |
| !! | TGATGCGGGTTCTGAGGAAG+TGG | + | Chr7:44085131-44085150 | MsG0780038318.01.T01:CDS | 55.0% |
| CGGCCATCGCTAGTGATACG+TGG | - | Chr7:44084373-44084392 | None:intergenic | 60.0% | |
| GGGCCTGGGAGTCTGTTTGT+TGG | + | Chr7:44084613-44084632 | MsG0780038318.01.T01:CDS | 60.0% | |
| GAAACGTGGCACGCGCACGT+TGG | - | Chr7:44084404-44084423 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr7 | gene | 44084097 | 44085296 | 44084097 | ID=MsG0780038318.01;Name=MsG0780038318.01 |
| Chr7 | mRNA | 44084097 | 44085296 | 44084097 | ID=MsG0780038318.01.T01;Parent=MsG0780038318.01;Name=MsG0780038318.01.T01;_AED=0.41;_eAED=0.41;_QI=0|-1|0|1|-1|1|1|0|399 |
| Chr7 | exon | 44084097 | 44085296 | 44084097 | ID=MsG0780038318.01.T01:exon:3947;Parent=MsG0780038318.01.T01 |
| Chr7 | CDS | 44084097 | 44085296 | 44084097 | ID=MsG0780038318.01.T01:cds;Parent=MsG0780038318.01.T01 |
| Gene Sequence |
| Protein sequence |
