Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029166.01.T01 | XP_003616591.1 | 92.727 | 275 | 12 | 1 | 1 | 275 | 150 | 416 | 2.42E-173 | 495 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029166.01.T01 | G7KGW7 | 92.727 | 275 | 12 | 1 | 1 | 275 | 150 | 416 | 1.15e-173 | 495 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000152.01 | MsG0580029166.01 | 0.824085 | 9.770214e-54 | 8.567349e-51 |
| MsG0180001795.01 | MsG0580029166.01 | 0.874139 | 8.530641e-68 | 3.796986e-64 |
| MsG0180002482.01 | MsG0580029166.01 | 0.820078 | 8.292451e-53 | 6.496980e-50 |
| MsG0180003128.01 | MsG0580029166.01 | 0.841758 | 3.912293e-58 | 5.806030e-55 |
| MsG0180003129.01 | MsG0580029166.01 | 0.816300 | 5.938481e-52 | 4.192269e-49 |
| MsG0180004844.01 | MsG0580029166.01 | -0.824760 | 6.780147e-54 | 6.062053e-51 |
| MsG0180004886.01 | MsG0580029166.01 | -0.835758 | 1.392707e-56 | 1.719482e-53 |
| MsG0180006220.01 | MsG0580029166.01 | 0.837934 | 3.877261e-57 | 5.114180e-54 |
| MsG0380012310.01 | MsG0580029166.01 | 0.800101 | 1.687648e-48 | 7.791174e-46 |
| MsG0380012661.01 | MsG0580029166.01 | -0.849695 | 2.741600e-60 | 5.241045e-57 |
| MsG0380013071.01 | MsG0580029166.01 | 0.884984 | 1.201166e-71 | 8.098799e-68 |
| MsG0480018906.01 | MsG0580029166.01 | 0.808761 | 2.642602e-50 | 1.523727e-47 |
| MsG0480021249.01 | MsG0580029166.01 | 0.842117 | 3.144887e-58 | 4.720646e-55 |
| MsG0480021250.01 | MsG0580029166.01 | 0.811050 | 8.497844e-51 | 5.206859e-48 |
| MsG0480021251.01 | MsG0580029166.01 | 0.844048 | 9.620231e-59 | 1.534456e-55 |
| MsG0580025052.01 | MsG0580029166.01 | -0.811039 | 8.546932e-51 | 5.235314e-48 |
| MsG0380017254.01 | MsG0580029166.01 | 0.839539 | 1.491856e-57 | 2.066436e-54 |
| MsG0580029166.01 | MsG0580029256.01 | 0.841764 | 3.898070e-58 | 5.786097e-55 |
| MsG0580029166.01 | MsG0580029717.01 | 0.811646 | 6.309855e-51 | 3.927034e-48 |
| MsG0580029166.01 | MsG0680035659.01 | 0.812640 | 3.828855e-51 | 2.447489e-48 |
| MsG0580029166.01 | MsG0780040038.01 | 0.833460 | 5.267041e-56 | 6.069401e-53 |
| MsG0580029166.01 | MsG0780040858.01 | 0.834075 | 3.695114e-56 | 4.337423e-53 |
| MsG0580029166.01 | MsG0880046126.01 | 0.815494 | 8.981048e-52 | 6.201853e-49 |
| MsG0580029166.01 | MsG0880046472.01 | 0.847572 | 1.062536e-59 | 1.896704e-56 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029166.01.T01 | MTR_5g082130 | 92.727 | 275 | 12 | 1 | 1 | 275 | 150 | 416 | 2.93e-177 | 495 |
| MsG0580029166.01.T01 | MTR_3g463450 | 39.938 | 323 | 132 | 4 | 1 | 269 | 194 | 508 | 6.16e-67 | 216 |
| MsG0580029166.01.T01 | MTR_2g103795 | 39.252 | 107 | 65 | 0 | 155 | 261 | 137 | 243 | 4.22e-17 | 79.3 |
| MsG0580029166.01.T01 | MTR_7g098450 | 31.073 | 177 | 116 | 2 | 82 | 255 | 174 | 347 | 1.08e-16 | 79.3 |
| MsG0580029166.01.T01 | MTR_7g098450 | 31.073 | 177 | 116 | 2 | 82 | 255 | 151 | 324 | 1.16e-16 | 79.3 |
| MsG0580029166.01.T01 | MTR_7g099260 | 35.849 | 106 | 66 | 1 | 160 | 265 | 240 | 343 | 3.40e-15 | 75.1 |
| MsG0580029166.01.T01 | MTR_4g114690 | 37.736 | 106 | 66 | 0 | 148 | 253 | 153 | 258 | 8.02e-14 | 70.5 |
| MsG0580029166.01.T01 | MTR_4g010250 | 35.514 | 107 | 67 | 2 | 155 | 260 | 122 | 227 | 1.90e-13 | 68.9 |
| MsG0580029166.01.T01 | MTR_1g073230 | 35.417 | 96 | 62 | 0 | 160 | 255 | 276 | 371 | 1.77e-11 | 64.3 |
| MsG0580029166.01.T01 | MTR_2g103795 | 39.080 | 87 | 53 | 0 | 155 | 241 | 137 | 223 | 3.09e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029166.01.T01 | AT3G47080 | 38.127 | 299 | 140 | 5 | 1 | 269 | 226 | 509 | 9.04e-61 | 201 |
| MsG0580029166.01.T01 | AT2G29670 | 47.879 | 165 | 83 | 1 | 105 | 269 | 368 | 529 | 6.41e-44 | 156 |
| MsG0580029166.01.T01 | AT2G29670 | 51.852 | 81 | 39 | 0 | 1 | 81 | 193 | 273 | 9.25e-22 | 94.7 |
| MsG0580029166.01.T01 | AT2G29670 | 47.879 | 165 | 83 | 1 | 105 | 269 | 368 | 529 | 6.41e-44 | 156 |
| MsG0580029166.01.T01 | AT2G29670 | 51.852 | 81 | 39 | 0 | 1 | 81 | 193 | 273 | 9.25e-22 | 94.7 |
| MsG0580029166.01.T01 | AT1G07280 | 48.171 | 164 | 76 | 2 | 105 | 268 | 389 | 543 | 7.16e-42 | 151 |
| MsG0580029166.01.T01 | AT1G07280 | 29.021 | 286 | 164 | 6 | 1 | 253 | 217 | 496 | 4.50e-25 | 104 |
| MsG0580029166.01.T01 | AT1G07280 | 48.171 | 164 | 76 | 2 | 105 | 268 | 389 | 543 | 7.16e-42 | 151 |
| MsG0580029166.01.T01 | AT1G07280 | 29.021 | 286 | 164 | 6 | 1 | 253 | 217 | 496 | 4.50e-25 | 104 |
| MsG0580029166.01.T01 | AT1G07280 | 48.171 | 164 | 76 | 2 | 105 | 268 | 389 | 543 | 7.16e-42 | 151 |
| MsG0580029166.01.T01 | AT1G07280 | 29.021 | 286 | 164 | 6 | 1 | 253 | 217 | 496 | 4.50e-25 | 104 |
| MsG0580029166.01.T01 | AT1G07280 | 28.846 | 260 | 163 | 5 | 1 | 253 | 217 | 461 | 4.83e-23 | 98.6 |
| MsG0580029166.01.T01 | AT1G07280 | 48.315 | 89 | 40 | 1 | 105 | 193 | 389 | 471 | 1.26e-16 | 79.7 |
| MsG0580029166.01.T01 | AT4G17940 | 37.255 | 102 | 64 | 0 | 152 | 253 | 145 | 246 | 3.41e-15 | 73.9 |
| MsG0580029166.01.T01 | AT5G20190 | 39.394 | 99 | 60 | 0 | 157 | 255 | 156 | 254 | 5.18e-14 | 70.9 |
| MsG0580029166.01.T01 | AT1G80130 | 37.374 | 99 | 62 | 0 | 155 | 253 | 163 | 261 | 1.02e-12 | 67.4 |
| MsG0580029166.01.T01 | AT4G32340 | 37.374 | 99 | 61 | 1 | 158 | 255 | 111 | 209 | 5.72e-11 | 61.6 |
Find 90 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTGGATAAGAAAGGATAAT+TGG | 0.189834 | 5:-93125967 | MsG0580029166.01.T01:CDS |
| AGAATTGAGGGGTGAGGATT+TGG | 0.196047 | 5:-93127088 | MsG0580029166.01.T01:CDS |
| AACTCTTATGGTTGATGTTA+TGG | 0.249882 | 5:-93127304 | MsG0580029166.01.T01:CDS |
| TTAATCATCCTTATAGATAA+AGG | 0.257329 | 5:+93127560 | None:intergenic |
| AATCACTCACTAGCTGTAAT+TGG | 0.266288 | 5:+93125690 | None:intergenic |
| AAGAACCCTTTCACCCAAAA+AGG | 0.270176 | 5:+93127984 | None:intergenic |
| TGTATATGGTTATATATAAA+TGG | 0.270930 | 5:-93125656 | MsG0580029166.01.T01:three_prime_UTR |
| CAGTGAAACACCAACTCTTA+TGG | 0.277824 | 5:-93127316 | MsG0580029166.01.T01:CDS |
| TCTCTCCCAAACTTGAATAT+TGG | 0.313359 | 5:-93127889 | MsG0580029166.01.T01:five_prime_UTR |
| TTGGGATCCCTTTATCTATA+AGG | 0.320106 | 5:-93127568 | MsG0580029166.01.T01:five_prime_UTR |
| AATCAGAAGGAAGAGAATAA+AGG | 0.320334 | 5:+93127855 | None:intergenic |
| TAGTTTCCAATATTCAAGTT+TGG | 0.321034 | 5:+93127883 | None:intergenic |
| GATAAATAGTAAGTGTTTCC+AGG | 0.335813 | 5:+93125905 | None:intergenic |
| ATTCATGGAACAGTTGTATA+TGG | 0.339223 | 5:-93125670 | MsG0580029166.01.T01:three_prime_UTR |
| CAAAGTATGCTAGTTTCCTT+TGG | 0.340397 | 5:-93125883 | MsG0580029166.01.T01:CDS |
| ATTTGTTTGGTTGTTTCAAC+AGG | 0.342400 | 5:-93127343 | MsG0580029166.01.T01:CDS |
| TGAAAATAAAAGAGAAATCT+TGG | 0.349066 | 5:-93127684 | MsG0580029166.01.T01:five_prime_UTR |
| TCTGGCCAACTAGGTGGTTC+AGG | 0.352770 | 5:+93127638 | None:intergenic |
| AGTTTCCAATATTCAAGTTT+GGG | 0.355232 | 5:+93127884 | None:intergenic |
| GGATATATAGATGGATAATA+TGG | 0.364546 | 5:+93125784 | None:intergenic |
| CCTTCAATCTCCACAGAAAC+AGG | 0.376600 | 5:+93127036 | None:intergenic |
| AAGTTATCTAATTCTTCTAT+AGG | 0.388681 | 5:+93125824 | None:intergenic |
| AAAGTTGTGGAATTCTTTGT+TGG | 0.394009 | 5:-93127133 | MsG0580029166.01.T01:CDS |
| TACAGCTAGTGAGTGATTCA+TGG | 0.396094 | 5:-93125685 | MsG0580029166.01.T01:three_prime_UTR |
| TAATCATCCTTATAGATAAA+GGG | 0.401185 | 5:+93127561 | None:intergenic |
| GAGACACTTGAAGCCATGTT+TGG | 0.403482 | 5:+93127908 | None:intergenic |
| AAGAAGTTACAATTAGAAGA+AGG | 0.410886 | 5:-93127536 | MsG0580029166.01.T01:five_prime_UTR |
| CAAGCATTGGAAGCAGATCC+TGG | 0.412961 | 5:-93125923 | MsG0580029166.01.T01:CDS |
| CCTGTTTCTGTGGAGATTGA+AGG | 0.415093 | 5:-93127036 | MsG0580029166.01.T01:CDS |
| CTCAAAATCTCTTCTCTCTC+TGG | 0.418789 | 5:+93127620 | None:intergenic |
| GTGGATAAGAAAGGATAATT+GGG | 0.419900 | 5:-93125966 | MsG0580029166.01.T01:CDS |
| TATAATAGAGAAATTTCAAA+AGG | 0.426185 | 5:+93128096 | None:intergenic |
| AAATGGATGATTCATTTGTT+TGG | 0.426457 | 5:-93127356 | MsG0580029166.01.T01:CDS |
| ATTAAAGTGGGATATATAGA+TGG | 0.427057 | 5:+93125775 | None:intergenic |
| TTTCTTGTTGTGGATAAGAA+AGG | 0.430860 | 5:-93125975 | MsG0580029166.01.T01:CDS |
| GAAAGAAAAGTGAAAAGTGT+TGG | 0.436681 | 5:-93127587 | MsG0580029166.01.T01:five_prime_UTR |
| AAAGAAAAGTGAAAAGTGTT+GGG | 0.437404 | 5:-93127586 | MsG0580029166.01.T01:five_prime_UTR |
| TAACAACAATAACACTGTTA+AGG | 0.439226 | 5:-93127247 | MsG0580029166.01.T01:CDS |
| ATCAGAAGGAAGAGAATAAA+GGG | 0.448088 | 5:+93127856 | None:intergenic |
| CAAACAAGGGAGTTACTTTG+TGG | 0.448949 | 5:-93127417 | MsG0580029166.01.T01:CDS |
| ATAGAAATTAATCACAATCA+AGG | 0.453839 | 5:+93128061 | None:intergenic |
| CTACAATAAGCTTCAGCCTC+TGG | 0.454464 | 5:+93126007 | None:intergenic |
| TGAAGACTTGGAAAGTGTTA+TGG | 0.456088 | 5:-93127394 | MsG0580029166.01.T01:CDS |
| GGTTAAGCTAAATAGAGAAA+TGG | 0.459163 | 5:-93127373 | MsG0580029166.01.T01:CDS |
| TTCCTTCTCAAGAAACTTGA+GGG | 0.462431 | 5:-93127774 | MsG0580029166.01.T01:five_prime_UTR |
| GTTTCTCTTCCTTGTCATGA+AGG | 0.469141 | 5:-93126917 | MsG0580029166.01.T01:CDS |
| GTTACTTTGTGGTGAAGACT+TGG | 0.471945 | 5:-93127406 | MsG0580029166.01.T01:CDS |
| AAAGATGCAAAGAGAATTGA+GGG | 0.474427 | 5:-93127100 | MsG0580029166.01.T01:CDS |
| ACCCCTCAAGTTTCTTGAGA+AGG | 0.474613 | 5:+93127772 | None:intergenic |
| GCTAGTTTCCTTTGGAACAC+TGG | 0.475032 | 5:-93125875 | MsG0580029166.01.T01:CDS |
| TCAAGATGAGTGTGTAAAGA+AGG | 0.482644 | 5:-93127175 | MsG0580029166.01.T01:CDS |
| AAAATCATGCTTTGCAAACA+AGG | 0.483766 | 5:-93127431 | MsG0580029166.01.T01:CDS |
| TCTTCTCTCTCTGGCCAACT+AGG | 0.491643 | 5:+93127629 | None:intergenic |
| GGTTGAATACCAAGAAAAGA+AGG | 0.496524 | 5:+93127659 | None:intergenic |
| ACTTCATTCATCAATGATGA+AGG | 0.496954 | 5:+93127216 | None:intergenic |
| GTTGTGGAATTCTTTGTTGG+AGG | 0.499754 | 5:-93127130 | MsG0580029166.01.T01:CDS |
| AAATTTCTCTATTATATGCA+CGG | 0.508536 | 5:-93128089 | MsG0580029166.01.T01:five_prime_UTR |
| CTGTTTCTGTGGAGATTGAA+GGG | 0.509829 | 5:-93127035 | MsG0580029166.01.T01:CDS |
| TTTCCTTCTCAAGAAACTTG+AGG | 0.512218 | 5:-93127775 | MsG0580029166.01.T01:five_prime_UTR |
| GCTGAGATATCTACAAGCAT+TGG | 0.512895 | 5:-93125936 | MsG0580029166.01.T01:CDS |
| CTTGTCATGAAGGACAATGA+TGG | 0.518352 | 5:-93126907 | MsG0580029166.01.T01:CDS |
| GCAAAGAGAATTGAGGGGTG+AGG | 0.519978 | 5:-93127094 | MsG0580029166.01.T01:CDS |
| CAAAGATGCAAAGAGAATTG+AGG | 0.524128 | 5:-93127101 | MsG0580029166.01.T01:CDS |
| GACAGAAGAAGTGAATTGTA+AGG | 0.526301 | 5:+93126952 | None:intergenic |
| GATTGAAGGGGATCAATATG+AGG | 0.534382 | 5:-93127022 | MsG0580029166.01.T01:CDS |
| TAGAAATTAATCACAATCAA+GGG | 0.539727 | 5:+93128062 | None:intergenic |
| CAGAAGAGGAAGAAAAGTTG+TGG | 0.546207 | 5:-93127146 | MsG0580029166.01.T01:CDS |
| CCACTGAGGAACAAAATCAA+TGG | 0.548168 | 5:-93127800 | MsG0580029166.01.T01:five_prime_UTR |
| CTACAAGCAATCAGTGCTAG+TGG | 0.548836 | 5:-93126035 | MsG0580029166.01.T01:CDS |
| GATATGCTGATTTCTTGTTG+TGG | 0.552344 | 5:-93125985 | MsG0580029166.01.T01:CDS |
| GTTGTCCACCAGTGTTCCAA+AGG | 0.555476 | 5:+93125867 | None:intergenic |
| TTGTCATGAAGGACAATGAT+GGG | 0.556695 | 5:-93126906 | MsG0580029166.01.T01:intron |
| TTCAACCTGAACCACCTAGT+TGG | 0.568199 | 5:-93127643 | MsG0580029166.01.T01:five_prime_UTR |
| AGTTTCCTTTGGAACACTGG+TGG | 0.570615 | 5:-93125872 | MsG0580029166.01.T01:CDS |
| AAAGAAGGAGTTAACAGAAG+AGG | 0.575932 | 5:-93127160 | MsG0580029166.01.T01:CDS |
| ATAATAGAGAAATTTCAAAA+GGG | 0.579273 | 5:+93128097 | None:intergenic |
| GGTGATTTCAATGAATCAGA+AGG | 0.590260 | 5:+93127842 | None:intergenic |
| TCTCTCTCTGGCCAACTAGG+TGG | 0.595097 | 5:+93127632 | None:intergenic |
| AAGAAGAACAAGAACAAGAA+CGG | 0.598620 | 5:+93127738 | None:intergenic |
| CATCATTGTCCTTCATGACA+AGG | 0.600117 | 5:+93126908 | None:intergenic |
| GTGTGTGAGTCCTGTTTCTG+TGG | 0.607525 | 5:-93127046 | MsG0580029166.01.T01:CDS |
| TGTTTCTGTGGAGATTGAAG+GGG | 0.609145 | 5:-93127034 | MsG0580029166.01.T01:CDS |
| ATAACATCAACCATAAGAGT+TGG | 0.609821 | 5:+93127306 | None:intergenic |
| AAATCATGCTTTGCAAACAA+GGG | 0.615943 | 5:-93127430 | MsG0580029166.01.T01:CDS |
| TCCTTCTCAAGAAACTTGAG+GGG | 0.638012 | 5:-93127773 | MsG0580029166.01.T01:five_prime_UTR |
| CAGTTTCTTCTCTGCCACTG+AGG | 0.668935 | 5:-93127814 | MsG0580029166.01.T01:five_prime_UTR |
| AGTGCTAGTGGAGTCACCAG+AGG | 0.684405 | 5:-93126023 | MsG0580029166.01.T01:CDS |
| TTGATGAATGAAGTTCTACA+TGG | 0.706429 | 5:-93127207 | MsG0580029166.01.T01:CDS |
| GGCAGAGAAGAAACTGAACG+TGG | 0.742162 | 5:+93127821 | None:intergenic |
| AAGATGCAAAGAGAATTGAG+GGG | 0.796557 | 5:-93127099 | MsG0580029166.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAACTGAAATTAAAGT+GGG | + | Chr5:93128044-93128063 | None:intergenic | 15.0% |
| !! | ATAATAGAGAAATTTCAAAA+GGG | + | Chr5:93125710-93125729 | None:intergenic | 15.0% |
| !! | TATAATAGAGAAATTTCAAA+AGG | + | Chr5:93125711-93125730 | None:intergenic | 15.0% |
| !! | TGTATATGGTTATATATAAA+TGG | - | Chr5:93128148-93128167 | MsG0580029166.01.T01:five_prime_UTR | 15.0% |
| !! | TGTCTATATAATAAAACTTA+AGG | + | Chr5:93127323-93127342 | None:intergenic | 15.0% |
| !!! | GATCACTAAATTTTTTTATA+AGG | + | Chr5:93125645-93125664 | None:intergenic | 15.0% |
| !! | AAATTTCTCTATTATATGCA+CGG | - | Chr5:93125715-93125734 | MsG0580029166.01.T01:three_prime_UTR | 20.0% |
| !! | AAGTTATCTAATTCTTCTAT+AGG | + | Chr5:93127983-93128002 | None:intergenic | 20.0% |
| !! | AATTCAATTGTGATACAATT+TGG | - | Chr5:93126932-93126951 | MsG0580029166.01.T01:CDS | 20.0% |
| !! | ATAGAAATTAATCACAATCA+AGG | + | Chr5:93125746-93125765 | None:intergenic | 20.0% |
| !! | CATATCAAATGTACAAAATA+AGG | + | Chr5:93127730-93127749 | None:intergenic | 20.0% |
| !! | GAAAAAAACTGAAATTAAAG+TGG | + | Chr5:93128045-93128064 | None:intergenic | 20.0% |
| !! | TAATCATCCTTATAGATAAA+GGG | + | Chr5:93126246-93126265 | None:intergenic | 20.0% |
| !! | TAGAAATTAATCACAATCAA+GGG | + | Chr5:93125745-93125764 | None:intergenic | 20.0% |
| !! | TGAAAATAAAAGAGAAATCT+TGG | - | Chr5:93126120-93126139 | MsG0580029166.01.T01:intron | 20.0% |
| !! | TTAATCATCCTTATAGATAA+AGG | + | Chr5:93126247-93126266 | None:intergenic | 20.0% |
| !!! | AATTTTCAGTGTATTTGTTT+TGG | - | Chr5:93127213-93127232 | MsG0580029166.01.T01:CDS | 20.0% |
| !!! | ATTTGATCAAATTTCCTTTT+TGG | - | Chr5:93125806-93125825 | MsG0580029166.01.T01:exon | 20.0% |
| !!! | CTCTTTTATTTTCATTATTG+TGG | + | Chr5:93126114-93126133 | None:intergenic | 20.0% |
| !!! | CTTATTTTGTACATTTGATA+TGG | - | Chr5:93127728-93127747 | MsG0580029166.01.T01:five_prime_UTR | 20.0% |
| !!! | TTAGATGTTTTTGCATTATA+TGG | - | Chr5:93126961-93126980 | MsG0580029166.01.T01:CDS | 20.0% |
| !!! | TTATATATAGCATTGCTATT+TGG | + | Chr5:93127616-93127635 | None:intergenic | 20.0% |
| !!! | TTTGATCAAATTTCCTTTTT+GGG | - | Chr5:93125807-93125826 | MsG0580029166.01.T01:exon | 20.0% |
| ! | AAAAACTTTGTAACCAAACA+TGG | - | Chr5:93125883-93125902 | MsG0580029166.01.T01:CDS | 25.0% |
| ! | AAATGGATGATTCATTTGTT+TGG | - | Chr5:93126448-93126467 | MsG0580029166.01.T01:intron | 25.0% |
| ! | AAATTGCAACCACAATATAA+AGG | + | Chr5:93127050-93127069 | None:intergenic | 25.0% |
| ! | AAGAAGTTACAATTAGAAGA+AGG | - | Chr5:93126268-93126287 | MsG0580029166.01.T01:intron | 25.0% |
| ! | ATTAAAGTGGGATATATAGA+TGG | + | Chr5:93128032-93128051 | None:intergenic | 25.0% |
| ! | CTTCAAAATCCTTTATATTG+TGG | - | Chr5:93127038-93127057 | MsG0580029166.01.T01:CDS | 25.0% |
| ! | GGATATATAGATGGATAATA+TGG | + | Chr5:93128023-93128042 | None:intergenic | 25.0% |
| ! | TAACAACAATAACACTGTTA+AGG | - | Chr5:93126557-93126576 | MsG0580029166.01.T01:intron | 25.0% |
| ! | TCCACAAAACAAAAATATCA+AGG | + | Chr5:93128067-93128086 | None:intergenic | 25.0% |
| !! | AGTTTCCAATATTCAAGTTT+GGG | + | Chr5:93125923-93125942 | None:intergenic | 25.0% |
| !! | TAGTTTCCAATATTCAAGTT+TGG | + | Chr5:93125924-93125943 | None:intergenic | 25.0% |
| !! | TTTGGTTACAAAGTTTTTCA+AGG | + | Chr5:93125881-93125900 | None:intergenic | 25.0% |
| !! | TTTTCTCTTAATACAGAACA+TGG | + | Chr5:93127098-93127117 | None:intergenic | 25.0% |
| !!! | AAAGAAAAGTGAAAAGTGTT+GGG | - | Chr5:93126218-93126237 | MsG0580029166.01.T01:intron | 25.0% |
| !!! | AAGAGCTAAAAGTATTTTGA+AGG | + | Chr5:93127592-93127611 | None:intergenic | 25.0% |
| !!! | TCCTTGATATTTTTGTTTTG+TGG | - | Chr5:93128063-93128082 | MsG0580029166.01.T01:five_prime_UTR | 25.0% |
| !!! | TTGGTTACAAAGTTTTTCAA+GGG | + | Chr5:93125880-93125899 | None:intergenic | 25.0% |
| AAAATCATGCTTTGCAAACA+AGG | - | Chr5:93126373-93126392 | MsG0580029166.01.T01:intron | 30.0% | |
| AAAGATGCAAAGAGAATTGA+GGG | - | Chr5:93126704-93126723 | MsG0580029166.01.T01:intron | 30.0% | |
| AAAGTTGTGGAATTCTTTGT+TGG | - | Chr5:93126671-93126690 | MsG0580029166.01.T01:intron | 30.0% | |
| AAATATGGATCATGTACATG+AGG | - | Chr5:93127494-93127513 | MsG0580029166.01.T01:five_prime_UTR | 30.0% | |
| AAATCATGCTTTGCAAACAA+GGG | - | Chr5:93126374-93126393 | MsG0580029166.01.T01:intron | 30.0% | |
| AAGAAGAACAAGAACAAGAA+CGG | + | Chr5:93126069-93126088 | None:intergenic | 30.0% | |
| AATCAGAAGGAAGAGAATAA+AGG | + | Chr5:93125952-93125971 | None:intergenic | 30.0% | |
| ACATTATGCTTCTGTATGTT+AGG | - | Chr5:93127340-93127359 | MsG0580029166.01.T01:CDS | 30.0% | |
| ACTTCATTCATCAATGATGA+AGG | + | Chr5:93126591-93126610 | None:intergenic | 30.0% | |
| ATAACATCAACCATAAGAGT+TGG | + | Chr5:93126501-93126520 | None:intergenic | 30.0% | |
| ATCAGAAGGAAGAGAATAAA+GGG | + | Chr5:93125951-93125970 | None:intergenic | 30.0% | |
| ATTCATGGAACAGTTGTATA+TGG | - | Chr5:93128134-93128153 | MsG0580029166.01.T01:five_prime_UTR | 30.0% | |
| CTGTATGTTAGGTACAAAAA+AGG | - | Chr5:93127351-93127370 | MsG0580029166.01.T01:CDS | 30.0% | |
| GATAAATAGTAAGTGTTTCC+AGG | + | Chr5:93127902-93127921 | None:intergenic | 30.0% | |
| GGTTAAGCTAAATAGAGAAA+TGG | - | Chr5:93126431-93126450 | MsG0580029166.01.T01:intron | 30.0% | |
| GTGGATAAGAAAGGATAATT+GGG | - | Chr5:93127838-93127857 | MsG0580029166.01.T01:five_prime_UTR | 30.0% | |
| TCAAAATCTGCGTTGAAATA+TGG | - | Chr5:93127479-93127498 | MsG0580029166.01.T01:five_prime_UTR | 30.0% | |
| TGTGGATAAGAAAGGATAAT+TGG | - | Chr5:93127837-93127856 | MsG0580029166.01.T01:five_prime_UTR | 30.0% | |
| TTGATGAATGAAGTTCTACA+TGG | - | Chr5:93126597-93126616 | MsG0580029166.01.T01:intron | 30.0% | |
| TTGTTCCTTTATGCAATGAA+GGG | - | Chr5:93127152-93127171 | MsG0580029166.01.T01:CDS | 30.0% | |
| TTTGTTCCTTTATGCAATGA+AGG | - | Chr5:93127151-93127170 | MsG0580029166.01.T01:CDS | 30.0% | |
| ! | AACTCTTATGGTTGATGTTA+TGG | - | Chr5:93126500-93126519 | MsG0580029166.01.T01:intron | 30.0% |
| ! | ATTTGTTTGGTTGTTTCAAC+AGG | - | Chr5:93126461-93126480 | MsG0580029166.01.T01:intron | 30.0% |
| ! | GAAAGAAAAGTGAAAAGTGT+TGG | - | Chr5:93126217-93126236 | MsG0580029166.01.T01:intron | 30.0% |
| ! | TTTCTTGTTGTGGATAAGAA+AGG | - | Chr5:93127829-93127848 | MsG0580029166.01.T01:five_prime_UTR | 30.0% |
| !!! | AAATTTCCTTTTTGGGTGAA+AGG | - | Chr5:93125814-93125833 | MsG0580029166.01.T01:CDS | 30.0% |
| !!! | AATTTCCTTTTTGGGTGAAA+GGG | - | Chr5:93125815-93125834 | MsG0580029166.01.T01:CDS | 30.0% |
| !!! | AGAACATGGTTTTAATTAGC+AGG | + | Chr5:93127084-93127103 | None:intergenic | 30.0% |
| !!! | TATTTGTTTTGGCCTAAAGT+GGG | - | Chr5:93127224-93127243 | MsG0580029166.01.T01:CDS | 30.0% |
| AAAGAAGGAGTTAACAGAAG+AGG | - | Chr5:93126644-93126663 | MsG0580029166.01.T01:intron | 35.0% | |
| AACCAATCACACATTTGCAT+AGG | + | Chr5:93127556-93127575 | None:intergenic | 35.0% | |
| AAGATGCAAAGAGAATTGAG+GGG | - | Chr5:93126705-93126724 | MsG0580029166.01.T01:intron | 35.0% | |
| AATCACTCACTAGCTGTAAT+TGG | + | Chr5:93128117-93128136 | None:intergenic | 35.0% | |
| ATCCTATGCAAATGTGTGAT+TGG | - | Chr5:93127551-93127570 | MsG0580029166.01.T01:five_prime_UTR | 35.0% | |
| CAAAGATGCAAAGAGAATTG+AGG | - | Chr5:93126703-93126722 | MsG0580029166.01.T01:intron | 35.0% | |
| CGCTGTTATGCTATAAAATG+CGG | - | Chr5:93126998-93127017 | MsG0580029166.01.T01:CDS | 35.0% | |
| GACAGAAGAAGTGAATTGTA+AGG | + | Chr5:93126855-93126874 | None:intergenic | 35.0% | |
| GGTGATTTCAATGAATCAGA+AGG | + | Chr5:93125965-93125984 | None:intergenic | 35.0% | |
| GGTTGAATACCAAGAAAAGA+AGG | + | Chr5:93126148-93126167 | None:intergenic | 35.0% | |
| GTTGTGATTACACACAATTC+AGG | + | Chr5:93127378-93127397 | None:intergenic | 35.0% | |
| TCAAGATGAGTGTGTAAAGA+AGG | - | Chr5:93126629-93126648 | MsG0580029166.01.T01:intron | 35.0% | |
| TCACACATTTGCATAGGATT+TGG | + | Chr5:93127550-93127569 | None:intergenic | 35.0% | |
| TCTCTCCCAAACTTGAATAT+TGG | - | Chr5:93125915-93125934 | MsG0580029166.01.T01:CDS | 35.0% | |
| TGTTCCTTTATGCAATGAAG+GGG | - | Chr5:93127153-93127172 | MsG0580029166.01.T01:CDS | 35.0% | |
| TTCCTTCTCAAGAAACTTGA+GGG | - | Chr5:93126030-93126049 | MsG0580029166.01.T01:CDS | 35.0% | |
| TTGGGATCCCTTTATCTATA+AGG | - | Chr5:93126236-93126255 | MsG0580029166.01.T01:intron | 35.0% | |
| TTGTCATGAAGGACAATGAT+GGG | - | Chr5:93126898-93126917 | MsG0580029166.01.T01:intron | 35.0% | |
| TTTCCTTCTCAAGAAACTTG+AGG | - | Chr5:93126029-93126048 | MsG0580029166.01.T01:CDS | 35.0% | |
| ! | ATCTTGGAACCTTCTTTTCT+TGG | - | Chr5:93126136-93126155 | MsG0580029166.01.T01:intron | 35.0% |
| ! | ATGTCATTTCAACCCACTTT+AGG | + | Chr5:93127239-93127258 | None:intergenic | 35.0% |
| ! | CAAAGTATGCTAGTTTCCTT+TGG | - | Chr5:93127921-93127940 | MsG0580029166.01.T01:five_prime_UTR | 35.0% |
| !! | GATATGCTGATTTCTTGTTG+TGG | - | Chr5:93127819-93127838 | MsG0580029166.01.T01:five_prime_UTR | 35.0% |
| !! | TGAAGACTTGGAAAGTGTTA+TGG | - | Chr5:93126410-93126429 | MsG0580029166.01.T01:intron | 35.0% |
| !!! | GTATTTGTTTTGGCCTAAAG+TGG | - | Chr5:93127223-93127242 | MsG0580029166.01.T01:CDS | 35.0% |
| AAGAACCCTTTCACCCAAAA+AGG | + | Chr5:93125823-93125842 | None:intergenic | 40.0% | |
| ATCACCCCTTCATTGCATAA+AGG | + | Chr5:93127160-93127179 | None:intergenic | 40.0% | |
| CAGAAGAGGAAGAAAAGTTG+TGG | - | Chr5:93126658-93126677 | MsG0580029166.01.T01:intron | 40.0% | |
| CAGTGAAACACCAACTCTTA+TGG | - | Chr5:93126488-93126507 | MsG0580029166.01.T01:intron | 40.0% | |
| CATAGGATTTGGATTGTGTG+CGG | + | Chr5:93127539-93127558 | None:intergenic | 40.0% | |
| CATCATTGTCCTTCATGACA+AGG | + | Chr5:93126899-93126918 | None:intergenic | 40.0% | |
| CCACTGAGGAACAAAATCAA+TGG | - | Chr5:93126004-93126023 | MsG0580029166.01.T01:CDS | 40.0% | |
| CTAAACCGTCTGATTAGATG+TGG | + | Chr5:93127421-93127440 | None:intergenic | 40.0% | |
| CTCAAAATCTCTTCTCTCTC+TGG | + | Chr5:93126187-93126206 | None:intergenic | 40.0% | |
| CTTGTCATGAAGGACAATGA+TGG | - | Chr5:93126897-93126916 | MsG0580029166.01.T01:intron | 40.0% | |
| GATTGAAGGGGATCAATATG+AGG | - | Chr5:93126782-93126801 | MsG0580029166.01.T01:intron | 40.0% | |
| GCTGAGATATCTACAAGCAT+TGG | - | Chr5:93127868-93127887 | MsG0580029166.01.T01:five_prime_UTR | 40.0% | |
| GTTAGCCACATCTAATCAGA+CGG | - | Chr5:93127413-93127432 | MsG0580029166.01.T01:CDS | 40.0% | |
| GTTGTGGAATTCTTTGTTGG+AGG | - | Chr5:93126674-93126693 | MsG0580029166.01.T01:intron | 40.0% | |
| GTTTCTCTTCCTTGTCATGA+AGG | - | Chr5:93126887-93126906 | MsG0580029166.01.T01:intron | 40.0% | |
| TACAGCTAGTGAGTGATTCA+TGG | - | Chr5:93128119-93128138 | MsG0580029166.01.T01:five_prime_UTR | 40.0% | |
| TCCTTCTCAAGAAACTTGAG+GGG | - | Chr5:93126031-93126050 | MsG0580029166.01.T01:CDS | 40.0% | |
| ! | CAAACAAGGGAGTTACTTTG+TGG | - | Chr5:93126387-93126406 | MsG0580029166.01.T01:intron | 40.0% |
| ! | GTTACTTTGTGGTGAAGACT+TGG | - | Chr5:93126398-93126417 | MsG0580029166.01.T01:intron | 40.0% |
| ! | TGTTTCTGTGGAGATTGAAG+GGG | - | Chr5:93126770-93126789 | MsG0580029166.01.T01:intron | 40.0% |
| !! | CTGTTTCTGTGGAGATTGAA+GGG | - | Chr5:93126769-93126788 | MsG0580029166.01.T01:intron | 40.0% |
| !!! | CCATTGATTTTGTTCCTCAG+TGG | + | Chr5:93126007-93126026 | None:intergenic | 40.0% |
| ACCCCTCAAGTTTCTTGAGA+AGG | + | Chr5:93126035-93126054 | None:intergenic | 45.0% | |
| AGAATTGAGGGGTGAGGATT+TGG | - | Chr5:93126716-93126735 | MsG0580029166.01.T01:intron | 45.0% | |
| ATGCGGTCGATGTTGTTCAT+AGG | - | Chr5:93127015-93127034 | MsG0580029166.01.T01:CDS | 45.0% | |
| CCTTCAATCTCCACAGAAAC+AGG | + | Chr5:93126771-93126790 | None:intergenic | 45.0% | |
| CTACAAGCAATCAGTGCTAG+TGG | - | Chr5:93127769-93127788 | MsG0580029166.01.T01:five_prime_UTR | 45.0% | |
| CTACAATAAGCTTCAGCCTC+TGG | + | Chr5:93127800-93127819 | None:intergenic | 45.0% | |
| GAGACACTTGAAGCCATGTT+TGG | + | Chr5:93125899-93125918 | None:intergenic | 45.0% | |
| TGGCTAACTATGCGCAATCA+CGG | + | Chr5:93127401-93127420 | None:intergenic | 45.0% | |
| TTCAACCTGAACCACCTAGT+TGG | - | Chr5:93126161-93126180 | MsG0580029166.01.T01:intron | 45.0% | |
| !! | AGTTTCCTTTGGAACACTGG+TGG | - | Chr5:93127932-93127951 | MsG0580029166.01.T01:five_prime_UTR | 45.0% |
| !! | CCTGTTTCTGTGGAGATTGA+AGG | - | Chr5:93126768-93126787 | MsG0580029166.01.T01:intron | 45.0% |
| !! | GCTAGTTTCCTTTGGAACAC+TGG | - | Chr5:93127929-93127948 | MsG0580029166.01.T01:five_prime_UTR | 45.0% |
| CAGTTTCTTCTCTGCCACTG+AGG | - | Chr5:93125990-93126009 | MsG0580029166.01.T01:CDS | 50.0% | |
| GCAAAGAGAATTGAGGGGTG+AGG | - | Chr5:93126710-93126729 | MsG0580029166.01.T01:intron | 50.0% | |
| GGCAGAGAAGAAACTGAACG+TGG | + | Chr5:93125986-93126005 | None:intergenic | 50.0% | |
| GGCTAACTATGCGCAATCAC+GGG | + | Chr5:93127400-93127419 | None:intergenic | 50.0% | |
| GTTGTCCACCAGTGTTCCAA+AGG | + | Chr5:93127940-93127959 | None:intergenic | 50.0% | |
| TCTTCTCTCTCTGGCCAACT+AGG | + | Chr5:93126178-93126197 | None:intergenic | 50.0% | |
| !! | CAAGCATTGGAAGCAGATCC+TGG | - | Chr5:93127881-93127900 | MsG0580029166.01.T01:five_prime_UTR | 50.0% |
| !! | GTGTGTGAGTCCTGTTTCTG+TGG | - | Chr5:93126758-93126777 | MsG0580029166.01.T01:intron | 50.0% |
| AGTGCTAGTGGAGTCACCAG+AGG | - | Chr5:93127781-93127800 | MsG0580029166.01.T01:five_prime_UTR | 55.0% | |
| TCTCTCTCTGGCCAACTAGG+TGG | + | Chr5:93126175-93126194 | None:intergenic | 55.0% | |
| TCTGGCCAACTAGGTGGTTC+AGG | + | Chr5:93126169-93126188 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 93125645 | 93128181 | 93125645 | ID=MsG0580029166.01;Name=MsG0580029166.01 |
| Chr5 | mRNA | 93125645 | 93128181 | 93125645 | ID=MsG0580029166.01.T01;Parent=MsG0580029166.01;Name=MsG0580029166.01.T01;_AED=0.34;_eAED=0.34;_QI=703|1|1|1|1|1|2|169|275 |
| Chr5 | exon | 93125645 | 93126069 | 93125645 | ID=MsG0580029166.01.T01:exon:17964;Parent=MsG0580029166.01.T01 |
| Chr5 | exon | 93126907 | 93128181 | 93126907 | ID=MsG0580029166.01.T01:exon:17963;Parent=MsG0580029166.01.T01 |
| Chr5 | five_prime_UTR | 93127479 | 93128181 | 93127479 | ID=MsG0580029166.01.T01:five_prime_utr;Parent=MsG0580029166.01.T01 |
| Chr5 | CDS | 93126907 | 93127478 | 93126907 | ID=MsG0580029166.01.T01:cds;Parent=MsG0580029166.01.T01 |
| Chr5 | CDS | 93125814 | 93126069 | 93125814 | ID=MsG0580029166.01.T01:cds;Parent=MsG0580029166.01.T01 |
| Chr5 | three_prime_UTR | 93125645 | 93125813 | 93125645 | ID=MsG0580029166.01.T01:three_prime_utr;Parent=MsG0580029166.01.T01 |
| Gene Sequence |
| Protein sequence |
