AlfalfaGEDB | MsG0380016367.01

M. sativa cultivar ZhongmuNo.1 / MsG0380016367.01

KEGG: K01698
GO: GO:0003824 GO:0004655 GO:0033014 GO:0046872
PFAM: PF00490

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016367.01.T01	GAU22828.1	52.233	515	89	13	6	489	8	396	3.43E-140	419

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016367.01.T01	P30124	51.935	491	78	14	31	489	34	398	2.32E-135	399

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016367.01.T01	A0A2Z6LX30	52.233	515	89	13	6	489	8	396	1.64e-140	419

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048754.01	MsG0380016367.01	0.869655	2.631273e-66	9.950780e-63
MsG0080048800.01	MsG0380016367.01	0.813671	2.274771e-51	1.494942e-48
MsG0180000567.01	MsG0380016367.01	-0.839309	1.711851e-57	2.354642e-54
MsG0180002546.01	MsG0380016367.01	0.800836	1.195646e-48	5.623755e-46
MsG0180002912.01	MsG0380016367.01	-0.803652	3.147380e-49	1.590318e-46
MsG0180004110.01	MsG0380016367.01	-0.804046	2.606921e-49	1.330683e-46
MsG0180004752.01	MsG0380016367.01	-0.837660	4.559947e-57	5.964501e-54
MsG0180004867.01	MsG0380016367.01	-0.827714	1.343220e-54	1.307184e-51
MsG0180005817.01	MsG0380016367.01	0.813216	2.863386e-51	1.858519e-48
MsG0180006012.01	MsG0380016367.01	-0.844960	5.470108e-59	8.977625e-56

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016367.01.T01	MTR_3g088610	52.041	490	79	13	31	489	49	413	1.17e-135	398
MsG0380016367.01.T01	MTR_3g088610	50.856	409	80	12	31	408	49	367	3.01e-107	324

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380016367.01.T01	AT1G69740	50.102	489	88	11	32	489	67	430	5.99e-132	389
MsG0380016367.01.T01	AT1G69740	50.102	489	88	11	32	489	67	430	5.99e-132	389
MsG0380016367.01.T01	AT1G69740	50.102	489	88	11	32	489	67	430	5.99e-132	389
MsG0380016367.01.T01	AT1G44318	46.256	227	76	6	44	242	59	267	8.26e-50	176
MsG0380016367.01.T01	AT1G44318	58.904	146	25	1	344	489	291	401	1.29e-43	159

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Find 122 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCTCTCTGTAGTTTGC+CGG	0.370396	3:-82546898	None:intergenic
AAGCCTCTCTGTAGTTTGCC+GGG	0.500631	3:-82546897	None:intergenic
AATAGAACCTTCAAAGCATC+TGG	0.395086	3:-82544981	None:intergenic
AATTCAGGTTGCAAAAGCAC+GGG	0.578637	3:+82544922	MsG0380016367.01.T01:intron
AATTTGAACGCTACGGTTAT+TGG	0.207031	3:-82546484	None:intergenic
ACGACCATCCATCATATCGC+TGG	0.517199	3:-82546004	None:intergenic
ACGCTACGGTTATTGGCGAA+AGG	0.601372	3:-82546477	None:intergenic
ACTCGATGATTAAGGCTGGT+GGG	0.569222	3:+82547878	MsG0380016367.01.T01:CDS
ACTTTGCCATATACTTGGTC+TGG	0.402461	3:+82546851	MsG0380016367.01.T01:CDS
AGAAACCAGCTTGTGCATAA+TGG	0.384533	3:-82546423	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTCTTGTGAAACTGTTT+CGG	+	Chr3:82544100-82544119	MsG0380016367.01.T01:intron	30.0%
AAATCATGGCTGAAAACATA+AGG	-	Chr3:82543071-82543090	None:intergenic	30.0%
AAATCGACAATTGCTAATGA+TGG	+	Chr3:82546239-82546258	MsG0380016367.01.T01:intron	30.0%
AAGCTCAAATAGTTCTTCAA+TGG	-	Chr3:82543657-82543676	None:intergenic	30.0%
AATCCGATTCTTTCCAAAAA+TGG	+	Chr3:82547280-82547299	MsG0380016367.01.T01:intron	30.0%
AATCGACAATTGCTAATGAT+GGG	+	Chr3:82546240-82546259	MsG0380016367.01.T01:intron	30.0%
AGAAACCTGTTGTGAATAAA+GGG	-	Chr3:82547851-82547870	None:intergenic	30.0%
AGAATCCCTGAACAAAATAA+TGG	-	Chr3:82545851-82545870	None:intergenic	30.0%
ATGACATTACCATTCAAAAG+TGG	+	Chr3:82544534-82544553	MsG0380016367.01.T01:CDS	30.0%
CAGAACATGATTCATTTCAT+TGG	+	Chr3:82545377-82545396	MsG0380016367.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	82542774	82548308	82542774	ID=MsG0380016367.01;Name=MsG0380016367.01
Chr3	mRNA	82542774	82548308	82542774	ID=MsG0380016367.01.T01;Parent=MsG0380016367.01;Name=MsG0380016367.01.T01;_AED=0.40;_eAED=0.51;_QI=0\|0.28\|0.33\|0.93\|0.92\|0.86\|15\|255\|489
Chr3	exon	82542774	82542862	82542774	ID=MsG0380016367.01.T01:exon:10871;Parent=MsG0380016367.01.T01
Chr3	exon	82543719	82543817	82543719	ID=MsG0380016367.01.T01:exon:10872;Parent=MsG0380016367.01.T01
Chr3	exon	82543937	82543989	82543937	ID=MsG0380016367.01.T01:exon:10873;Parent=MsG0380016367.01.T01
Chr3	exon	82544315	82544388	82544315	ID=MsG0380016367.01.T01:exon:10874;Parent=MsG0380016367.01.T01
Chr3	exon	82544513	82544568	82544513	ID=MsG0380016367.01.T01:exon:10875;Parent=MsG0380016367.01.T01
Chr3	exon	82544929	82544995	82544929	ID=MsG0380016367.01.T01:exon:10876;Parent=MsG0380016367.01.T01
Chr3	exon	82545083	82545158	82545083	ID=MsG0380016367.01.T01:exon:10877;Parent=MsG0380016367.01.T01
Chr3	exon	82545262	82545318	82545262	ID=MsG0380016367.01.T01:exon:10878;Parent=MsG0380016367.01.T01
Chr3	exon	82545745	82545800	82545745	ID=MsG0380016367.01.T01:exon:10879;Parent=MsG0380016367.01.T01
Chr3	exon	82545976	82546071	82545976	ID=MsG0380016367.01.T01:exon:10880;Parent=MsG0380016367.01.T01
Chr3	exon	82546351	82546492	82546351	ID=MsG0380016367.01.T01:exon:10881;Parent=MsG0380016367.01.T01
Chr3	exon	82546713	82546966	82546713	ID=MsG0380016367.01.T01:exon:10882;Parent=MsG0380016367.01.T01
Chr3	exon	82547062	82547244	82547062	ID=MsG0380016367.01.T01:exon:10883;Parent=MsG0380016367.01.T01
Chr3	exon	82547865	82548118	82547865	ID=MsG0380016367.01.T01:exon:10884;Parent=MsG0380016367.01.T01
Chr3	exon	82548140	82548308	82548140	ID=MsG0380016367.01.T01:exon:10885;Parent=MsG0380016367.01.T01
Chr3	CDS	82542774	82542862	82542774	ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3	CDS	82543719	82543817	82543719	ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3	CDS	82543937	82543989	82543937	ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3	CDS	82544315	82544388	82544315	ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3	CDS	82544513	82544568	82544513	ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3	CDS	82544929	82544995	82544929	ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3	CDS	82545083	82545158	82545083	ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3	CDS	82545262	82545318	82545262	ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3	CDS	82545745	82545800	82545745	ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3	CDS	82545976	82546071	82545976	ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3	CDS	82546351	82546492	82546351	ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3	CDS	82546713	82546966	82546713	ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3	CDS	82547062	82547244	82547062	ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3	CDS	82547865	82548032	82547865	ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3	three_prime_UTR	82548033	82548118	82548033	ID=MsG0380016367.01.T01:three_prime_utr;Parent=MsG0380016367.01.T01
Chr3	three_prime_UTR	82548140	82548308	82548140	ID=MsG0380016367.01.T01:three_prime_utr;Parent=MsG0380016367.01.T01

Gene Sequence

>MsG0380016367.01.T01

ATGTATGTCGCCTTGGACGTGACATTAGTGCACTTTTGTTTCACATTCTGTAATGATAATCAAGTAGATAACTATCGGAGGTACAAAATAGCTAGTGATGCAGATTTCGAAGCCGCTGTTGTCGCTGGTAATGTGCCGGATGCGCCTCCTGTACCGCCTACACCGGCTGCACCTGCTGGAACCCAGTGCCAATTCAGAGGCGTCCTCGTCGTAATAGAAGATCAGCTACACATCGATCCGCGTGAGGAGGCACCCCCAATTGGTGCTATGCCCGGATGCTACAGGCTTGGTTGGAGACACGGACTGTTGCAAGAGCAGGATCAATCACAAGCTAATATGACATTACCATTCAAAAGTGGTATTGAATTGGGGTTGCAAAAGCACGGGATGTTGGTGTTAACAGTGTTGTGCTCTTCCAAAATTCCAGATGCTTTGAAGGATGAGGCATACAATGAGAATGGCTTAGTGCCTCGAACTATACGATTACTTAAGAATAAATACCCTGATCTTGTAAATGTTGCATTAGACCCATATTCTTCAGATGGGCATGACGGCATTGTTAGAGAAGATGGAGTTATCATGAATGATGAGACTGTTCATCAGCTTTGTAAACAAGCTGTAGCCCAGGCCCGTGCTGGAGCAGATGTGGTCAGCCCCAGCGATATGATGGATGGTCGTGTTGGAGCAATGCGAGCAGCTCTCGATGCTGAAGGCTTTCAGCATGTTGTAGCATTGGGTATCGGTGAAGATATTCAAAATGTGTGGCATATAAATGATTTTATAAGTGAAGCATTTCCATTATGCACAAGCTGGTTTCTTTCTTATGCAAGTTATGAACAATTTTATCTTCCTTTCGCCAATAACCGTACGCGAGTTCATTTTATGGCCCATTTAGGGAAGCATTGGACTCAAACCCCCGTTTTGGAGATAAAAAGACGTATGTATTACCTTGAAATTGAACTGAGTGCCAAATATTTAATCTATTTTAAATTATTGATTATTTACTTTGCCATATACTTGGTCTGGCTGAACAAAAGCTATCAGATGAACCCGGCAAACTACAGAGAGGCTTTGACTGAAATGAGGGAAGATGAATCAGAAGGAGCTGATATTCTATTGGTGAAGCCCGGGCTTCCTTATTTGGATATCATAAGGCTACTCAGAGATAATTCTCCGCTGCCAATTGCAGCATACCAGGTTCTTCTCTGGCCCATTCTAGTTCTTGGCATAAACAAAAGTGATGCTTATATTTTTATATCGAGCAGGGGCACAGGTTTTATGGTTGCTTCAACAGTTATTGTCGTTTCTGGTGAGTACTCGATGATTAAGGCTGGTGGGGCTCTTAAAATGATTGATGAAGAAAAGGTGATGATGGAGTCATTACTGTGCCTTAGACGTGCCGGTGCTGACATCATCCTAACATATTTTGCTCTACAAGCTGCCAGATTTTTGTGTGGAGAAAAAAGGTGA

Protein sequence

>MsG0380016367.01.T01

MYVALDVTLVHFCFTFCNDNQVDNYRRYKIASDADFEAAVVAGNVPDAPPVPPTPAAPAGTQCQFRGVLVVIEDQLHIDPREEAPPIGAMPGCYRLGWRHGLLQEQDQSQANMTLPFKSGIELGLQKHGMLVLTVLCSSKIPDALKDEAYNENGLVPRTIRLLKNKYPDLVNVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQARAGADVVSPSDMMDGRVGAMRAALDAEGFQHVVALGIGEDIQNVWHINDFISEAFPLCTSWFLSYASYEQFYLPFANNRTRVHFMAHLGKHWTQTPVLEIKRRMYYLEIELSAKYLIYFKLLIIYFAIYLVWLNKSYQMNPANYREALTEMREDESEGADILLVKPGLPYLDIIRLLRDNSPLPIAAYQVLLWPILVLGINKSDAYIFISSRGTGFMVASTVIVVSGEYSMIKAGGALKMIDEEKVMMESLLCLRRAGADIILTYFALQAARFLCGEKR*