AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016367.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016367.01.T01 MTR_3g088610 52.041 490 79 13 31 489 49 413 1.17e-135 398
MsG0380016367.01.T01 MTR_3g088610 50.856 409 80 12 31 408 49 367 3.01e-107 324
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016367.01.T01 AT1G69740 50.102 489 88 11 32 489 67 430 5.99e-132 389
MsG0380016367.01.T01 AT1G69740 50.102 489 88 11 32 489 67 430 5.99e-132 389
MsG0380016367.01.T01 AT1G69740 50.102 489 88 11 32 489 67 430 5.99e-132 389
MsG0380016367.01.T01 AT1G44318 46.256 227 76 6 44 242 59 267 8.26e-50 176
MsG0380016367.01.T01 AT1G44318 58.904 146 25 1 344 489 291 401 1.29e-43 159

Find 122 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAAAGCATCTGGAATTT+TGG 0.101690 3:-82544973 None:intergenic
CTTTGAGCTCTCTGGCCTTC+TGG 0.109394 3:-82548064 None:intergenic
TTTAAAATAGATTAAATATT+TGG 0.124449 3:-82546815 None:intergenic
CTCTGGCCCATTCTAGTTCT+TGG 0.135861 3:+82547146 MsG0380016367.01.T01:CDS
CTTTATTCACAACAGGTTTC+TGG 0.142989 3:+82547850 MsG0380016367.01.T01:intron
GAAGCCCGGGCTTCCTTATT+TGG 0.164607 3:+82547064 MsG0380016367.01.T01:CDS
GAGTCCAATGCTTCCCTAAA+TGG 0.193544 3:-82546735 None:intergenic
AATTTGAACGCTACGGTTAT+TGG 0.207031 3:-82546484 None:intergenic
TTACACCATTTGTAAGATAA+TGG 0.240086 3:-82548177 None:intergenic
GTGAGATTCTTCAAACATTT+AGG 0.248335 3:+82548029 MsG0380016367.01.T01:exon
TCATGCCCATCTGAAGAATA+TGG 0.266166 3:-82545276 None:intergenic
TTCAAAAGTGGTATTGAATT+GGG 0.283085 3:+82544546 MsG0380016367.01.T01:CDS
TTTGAGCTCTCTGGCCTTCT+GGG 0.294963 3:-82548063 None:intergenic
ATTCAAAAGTGGTATTGAAT+TGG 0.296613 3:+82544545 MsG0380016367.01.T01:CDS
CAAAATTCCAGATGCTTTGA+AGG 0.315818 3:+82544974 MsG0380016367.01.T01:CDS
GTTCAGCCAGACCAAGTATA+TGG 0.328890 3:-82546857 None:intergenic
TACACCATTTGTAAGATAAT+GGG 0.335377 3:-82548176 None:intergenic
CGACGAGGACGCCTCTGAAT+TGG 0.335567 3:-82543937 None:intergenic
TGGTGAGTACTCGATGATTA+AGG 0.335831 3:+82547870 MsG0380016367.01.T01:CDS
AGCCTTATGATATCCAAATA+AGG 0.360550 3:-82547077 None:intergenic
AAAGCCTCTCTGTAGTTTGC+CGG 0.370396 3:-82546898 None:intergenic
TTCCTTATTTGGATATCATA+AGG 0.373814 3:+82547075 MsG0380016367.01.T01:CDS
AGAAACCAGCTTGTGCATAA+TGG 0.384533 3:-82546423 None:intergenic
CTGTGTTCACTTACAAGATC+AGG 0.387731 3:-82545146 None:intergenic
AATAGAACCTTCAAAGCATC+TGG 0.395086 3:-82544981 None:intergenic
TGTCAGCACCGGCACGTCTA+AGG 0.398953 3:-82547951 None:intergenic
ACTTTGCCATATACTTGGTC+TGG 0.402461 3:+82546851 MsG0380016367.01.T01:CDS
GTCAAATGCTTTGAGCTCTC+TGG 0.403806 3:-82548072 None:intergenic
CTTGTAGAGCAAAATATGTT+AGG 0.407581 3:-82547978 None:intergenic
CCTACACCGGCTGCACCTGC+TGG 0.413535 3:+82543786 MsG0380016367.01.T01:CDS
GTTTATGCCAAGAACTAGAA+TGG 0.413603 3:-82547153 None:intergenic
GGCGGTACAGGAGGCGCATC+CGG 0.419126 3:-82543765 None:intergenic
GCAGCCGGTGTAGGCGGTAC+AGG 0.421060 3:-82543777 None:intergenic
ATCCGGGCATAGCACCAATT+GGG 0.425461 3:-82544328 None:intergenic
CATCCGGGCATAGCACCAAT+TGG 0.428311 3:-82544329 None:intergenic
CTATTATAGGTTGTAGCATT+GGG 0.428652 3:+82546342 MsG0380016367.01.T01:intron
AGTCCAATGCTTCCCTAAAT+GGG 0.431083 3:-82546734 None:intergenic
TATTTACTTTGCCATATACT+TGG 0.431213 3:+82546846 MsG0380016367.01.T01:CDS
AGAAGGAGCTGATATTCTAT+TGG 0.434691 3:+82546945 MsG0380016367.01.T01:CDS
TGGCACTCAGTTCAATTTCA+AGG 0.436600 3:-82546795 None:intergenic
CCAGCAGGTGCAGCCGGTGT+AGG 0.444930 3:-82543786 None:intergenic
TTCGAAGCCGCTGTTGTCGC+TGG 0.446142 3:+82543735 MsG0380016367.01.T01:CDS
TCTATTATAGGTTGTAGCAT+TGG 0.449852 3:+82546341 MsG0380016367.01.T01:intron
CAGCATACCAGGTTCTTCTC+TGG 0.450878 3:+82547129 MsG0380016367.01.T01:CDS
TCAACCCATTATCTTACAAA+TGG 0.451285 3:+82548172 MsG0380016367.01.T01:three_prime_UTR
CCAACCAAGCCTGTAGCATC+CGG 0.454753 3:-82544345 None:intergenic
TAAAATGATTGATGAAGAAA+AGG 0.462660 3:+82547906 MsG0380016367.01.T01:CDS
TGGCCCATTTAGGGAAGCAT+TGG 0.464040 3:+82546731 MsG0380016367.01.T01:CDS
AGAACCTGGTATGCTGCAAT+TGG 0.471730 3:-82547122 None:intergenic
GTGCTATGCCCGGATGCTAC+AGG 0.477134 3:+82544336 MsG0380016367.01.T01:CDS
TTGCATGTGCAGGTGAAGCC+CGG 0.481948 3:+82547050 MsG0380016367.01.T01:intron
TGGGTTCCAGCAGGTGCAGC+CGG 0.484345 3:-82543792 None:intergenic
GACCACATCTGCTCCAGCAC+GGG 0.485822 3:-82545977 None:intergenic
ATTTGTTATGTATGTCGCCT+TGG 0.487414 3:+82542767 None:intergenic
TTAAGTAATCGTATAGTTCG+AGG 0.489270 3:-82545113 None:intergenic
AAGCCTCTCTGTAGTTTGCC+GGG 0.500631 3:-82546897 None:intergenic
TGATGAAGAAAAGGTGATGA+TGG 0.507074 3:+82547915 MsG0380016367.01.T01:CDS
CGACCATCCATCATATCGCT+GGG 0.509074 3:-82546003 None:intergenic
GACGGCATTGTTAGAGAAGA+TGG 0.510196 3:+82545297 MsG0380016367.01.T01:CDS
CATTTCCATTATGCACAAGC+TGG 0.510233 3:+82546418 MsG0380016367.01.T01:CDS
TTTATGCCAAGAACTAGAAT+GGG 0.510381 3:-82547152 None:intergenic
CATGCCCATCTGAAGAATAT+GGG 0.510541 3:-82545275 None:intergenic
ACGACCATCCATCATATCGC+TGG 0.517199 3:-82546004 None:intergenic
GATATCCAAATAAGGAAGCC+CGG 0.522417 3:-82547069 None:intergenic
CGAGCAGCTCTCGATGCTGA+AGG 0.524524 3:+82546039 MsG0380016367.01.T01:CDS
TAATTCAGGTTGCAAAAGCA+CGG 0.525795 3:+82544921 MsG0380016367.01.T01:intron
GCTGCCAATTGCAGCATACC+AGG 0.526983 3:+82547118 MsG0380016367.01.T01:CDS
GGCCCGTGCTGGAGCAGATG+TGG 0.528623 3:+82545975 MsG0380016367.01.T01:intron
CTCGATGATTAAGGCTGGTG+GGG 0.530917 3:+82547879 MsG0380016367.01.T01:CDS
TGACCACATCTGCTCCAGCA+CGG 0.535344 3:-82545978 None:intergenic
TTTATATCGAGCAGGGGCAC+AGG 0.540765 3:+82547194 MsG0380016367.01.T01:CDS
GTTGCAAAAGCACGGGATGT+TGG 0.543180 3:+82544929 MsG0380016367.01.T01:CDS
TAGGTTGTAGCATTGGGTAT+CGG 0.543415 3:+82546348 MsG0380016367.01.T01:intron
GGTCAGCCCCAGCGATATGA+TGG 0.544470 3:+82545996 MsG0380016367.01.T01:CDS
TACAGGCTTGGTTGGAGACA+CGG 0.544880 3:+82544353 MsG0380016367.01.T01:CDS
TGCATGTGCAGGTGAAGCCC+GGG 0.545344 3:+82547051 MsG0380016367.01.T01:intron
GCAGGTGCAGCCGGTGTAGG+CGG 0.548510 3:-82543783 None:intergenic
TACTCGATGATTAAGGCTGG+TGG 0.549281 3:+82547877 MsG0380016367.01.T01:CDS
TTAGACCCATATTCTTCAGA+TGG 0.549974 3:+82545270 MsG0380016367.01.T01:CDS
ATAATCAAGTAGATAACTAT+CGG 0.554722 3:+82542829 MsG0380016367.01.T01:CDS
ATGCCCGGATGCTACAGGCT+TGG 0.560235 3:+82544341 MsG0380016367.01.T01:CDS
GAGAGGCTTTGACTGAAATG+AGG 0.562495 3:+82546911 MsG0380016367.01.T01:CDS
TCAAAAGTGGTATTGAATTG+GGG 0.564523 3:+82544547 MsG0380016367.01.T01:CDS
TAGACCCATATTCTTCAGAT+GGG 0.565926 3:+82545271 MsG0380016367.01.T01:CDS
ATGACATTACCATTCAAAAG+TGG 0.566442 3:+82544534 MsG0380016367.01.T01:CDS
GATGAGGCATACAATGAGAA+TGG 0.567595 3:+82545083 MsG0380016367.01.T01:CDS
ACTCGATGATTAAGGCTGGT+GGG 0.569222 3:+82547878 MsG0380016367.01.T01:CDS
CCGGATGCTACAGGCTTGGT+TGG 0.571140 3:+82544345 MsG0380016367.01.T01:CDS
CAACCAAGCCTGTAGCATCC+GGG 0.572018 3:-82544344 None:intergenic
TGGTATGCTGCAATTGGCAG+CGG 0.572258 3:-82547116 None:intergenic
TCCGGGCATAGCACCAATTG+GGG 0.572554 3:-82544327 None:intergenic
TTGTAAACAAGCTGTAGCCC+AGG 0.575741 3:+82545779 MsG0380016367.01.T01:CDS
AGTCACCACTGGGTTCCAGC+AGG 0.576230 3:-82543801 None:intergenic
TGTTGTCGCTGGTAATGTGC+CGG 0.576305 3:+82543746 MsG0380016367.01.T01:CDS
AATTCAGGTTGCAAAAGCAC+GGG 0.578637 3:+82544922 MsG0380016367.01.T01:intron
GTGCACTAATGTCACGTCCA+AGG 0.587137 3:-82542784 None:intergenic
ATATCCAAATAAGGAAGCCC+GGG 0.588446 3:-82547068 None:intergenic
TTACTGTGCCTTAGACGTGC+CGG 0.589296 3:+82547943 MsG0380016367.01.T01:CDS
ACGCTACGGTTATTGGCGAA+AGG 0.601372 3:-82546477 None:intergenic
AGAGGCTTTGACTGAAATGA+GGG 0.601731 3:+82546912 MsG0380016367.01.T01:CDS
TATTCTTCAGATGGGCATGA+CGG 0.608908 3:+82545279 MsG0380016367.01.T01:CDS
GAGACACGGACTGTTGCAAG+AGG 0.609699 3:+82544367 MsG0380016367.01.T01:CDS
TGTTAGGATGATGTCAGCAC+CGG 0.612290 3:-82547962 None:intergenic
GCCGGTGTAGGCGGTACAGG+AGG 0.615236 3:-82543774 None:intergenic
TGTGTTCACTTACAAGATCA+GGG 0.616355 3:-82545145 None:intergenic
AGCCCCAGCGATATGATGGA+TGG 0.618898 3:+82546000 MsG0380016367.01.T01:CDS
ATGAGGGAAGATGAATCAGA+AGG 0.619265 3:+82546928 MsG0380016367.01.T01:CDS
GTGAAGATATTCAAAATGTG+TGG 0.622334 3:+82546370 MsG0380016367.01.T01:CDS
GAGTACTCGATGATTAAGGC+TGG 0.624101 3:+82547874 MsG0380016367.01.T01:CDS
CAAAAGCTATCAGATGAACC+CGG 0.644138 3:+82546879 MsG0380016367.01.T01:CDS
CACATTACCAGCGACAACAG+CGG 0.644957 3:-82543742 None:intergenic
GCCTCCTGTACCGCCTACAC+CGG 0.648035 3:+82543773 MsG0380016367.01.T01:CDS
GAATGGGCCAGAGAAGAACC+TGG 0.650532 3:-82547136 None:intergenic
GCTCAAAGCATTTGACAGTG+TGG 0.658784 3:+82548079 MsG0380016367.01.T01:three_prime_UTR
GATATGATGGATGGTCGTGT+TGG 0.663532 3:+82546009 MsG0380016367.01.T01:CDS
CCGGGCATAGCACCAATTGG+GGG 0.674106 3:-82544326 None:intergenic
TGGTGTAATTTAATCAACTG+CGG 0.675934 3:+82548192 MsG0380016367.01.T01:three_prime_UTR
CTGCACCTGCTGGAACCCAG+TGG 0.693054 3:+82543796 MsG0380016367.01.T01:CDS
ATCAAGTAGATAACTATCGG+AGG 0.694273 3:+82542832 MsG0380016367.01.T01:CDS
GACCATCCATCATATCGCTG+GGG 0.723541 3:-82546002 None:intergenic
GAACCCGGCAAACTACAGAG+AGG 0.774109 3:+82546894 MsG0380016367.01.T01:CDS
GCTGATCTTCTATTACGACG+AGG 0.800899 3:-82543952 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTAAAAAAAAACATTTTTAA+AGG + Chr3:82544588-82544607 MsG0380016367.01.T01:intron 10.0%
!!! TTTGTTTTTTATTTTATGAA+AGG + Chr3:82545954-82545973 MsG0380016367.01.T01:intron 10.0%
!!! TTTTTTTTTTTTTATTGATC+TGG + Chr3:82546265-82546284 MsG0380016367.01.T01:intron 10.0%
!! ATATATTCTACCAAAAATTA+TGG - Chr3:82545022-82545041 None:intergenic 15.0%
!! GAAATAAGTTTAGTAAAAAA+AGG + Chr3:82546199-82546218 MsG0380016367.01.T01:intron 15.0%
!! TAAACTAAAATTCAATACTA+AGG - Chr3:82544883-82544902 None:intergenic 15.0%
!! TTTAGAAGATAAAAAAGAAA+AGG - Chr3:82544826-82544845 None:intergenic 15.0%
!!! AAAGTAATCTTTCTAAATTT+TGG + Chr3:82543034-82543053 MsG0380016367.01.T01:intron 15.0%
!!! AAGATAAGTTATTGTTATTA+AGG - Chr3:82543434-82543453 None:intergenic 15.0%
!!! AAGTAATCTTTCTAAATTTT+GGG + Chr3:82543035-82543054 MsG0380016367.01.T01:intron 15.0%
!!! TAATCTAAACATTTTACATT+TGG + Chr3:82545438-82545457 MsG0380016367.01.T01:intron 15.0%
!! AGAAATTAAAAAAGAATCGT+CGG + Chr3:82545563-82545582 MsG0380016367.01.T01:intron 20.0%
!! ATAATCAAGTAGATAACTAT+CGG + Chr3:82542829-82542848 MsG0380016367.01.T01:CDS 20.0%
!! CATAATTCTATTTGTAGAAT+TGG - Chr3:82546591-82546610 None:intergenic 20.0%
!! GAAATTGAATAAAATTTGTC+TGG + Chr3:82543374-82543393 MsG0380016367.01.T01:intron 20.0%
!! TAAAATGATTGATGAAGAAA+AGG + Chr3:82547906-82547925 MsG0380016367.01.T01:CDS 20.0%
!!! AAAAGGTTTTATGTTTGTTT+GGG - Chr3:82544809-82544828 None:intergenic 20.0%
!!! AATGTTTTTTTTTACAGCAA+TGG - Chr3:82544583-82544602 None:intergenic 20.0%
!!! AGATTATGCAGATATTTTTT+TGG + Chr3:82544612-82544631 MsG0380016367.01.T01:intron 20.0%
!!! TAAAAAAACGATTTTAACTC+TGG + Chr3:82543246-82543265 MsG0380016367.01.T01:intron 20.0%
!!! TCTTTTTTAATTTCTTTTCC+AGG - Chr3:82545558-82545577 None:intergenic 20.0%
!!! TTAATAAAGTCAACTTTTTG+CGG + Chr3:82548287-82548306 MsG0380016367.01.T01:three_prime_UTR 20.0%
!!! TTATATTTTTATATCGAGCA+GGG + Chr3:82547187-82547206 MsG0380016367.01.T01:CDS 20.0%
!!! TTGAGAATGTTATATTTTTC+TGG + Chr3:82545178-82545197 MsG0380016367.01.T01:intron 20.0%
! AAAGATGTAGTTATATTACC+TGG - Chr3:82545800-82545819 None:intergenic 25.0%
! AAATTTAGCTGAGAAAATGT+TGG + Chr3:82544475-82544494 MsG0380016367.01.T01:intron 25.0%
! AAGATGTAGTTATATTACCT+GGG - Chr3:82545799-82545818 None:intergenic 25.0%
! AAGTATAGCAAGAAAAACTT+TGG - Chr3:82545900-82545919 None:intergenic 25.0%
! AATCTAGATAACAACCAATA+AGG - Chr3:82543479-82543498 None:intergenic 25.0%
! AATTGACTGCTTTAATCTTA+AGG - Chr3:82547756-82547775 None:intergenic 25.0%
! ACTAAATTATGTTAGTGTCT+TGG - Chr3:82545934-82545953 None:intergenic 25.0%
! AGATAAGATACAAAAACAGT+TGG + Chr3:82547650-82547669 MsG0380016367.01.T01:intron 25.0%
! AGTGGATAAACAAAATTAGT+AGG - Chr3:82544015-82544034 None:intergenic 25.0%
! ATAACTCCTACAAGATATTA+AGG - Chr3:82545732-82545751 None:intergenic 25.0%
! ATCATGTTCTGTAACAAAAT+AGG - Chr3:82545368-82545387 None:intergenic 25.0%
! ATGATTTGAACTATTCTTGA+AGG + Chr3:82545650-82545669 MsG0380016367.01.T01:intron 25.0%
! ATTGACTGCTTTAATCTTAA+GGG - Chr3:82547755-82547774 None:intergenic 25.0%
! GAAATTAAAAAAGAATCGTC+GGG + Chr3:82545564-82545583 MsG0380016367.01.T01:intron 25.0%
! GTATATCCTTAATATCTTGT+AGG + Chr3:82545723-82545742 MsG0380016367.01.T01:intron 25.0%
! GTGTACTTTAATATTATTCC+TGG + Chr3:82545537-82545556 MsG0380016367.01.T01:intron 25.0%
! GTTGTTCATCATAGATATTA+TGG + Chr3:82547706-82547725 MsG0380016367.01.T01:intron 25.0%
! TACACCATTTGTAAGATAAT+GGG - Chr3:82548179-82548198 None:intergenic 25.0%
! TAGAATTATGACTAACAAGA+TGG + Chr3:82546601-82546620 MsG0380016367.01.T01:intron 25.0%
! TATTTACTTTGCCATATACT+TGG + Chr3:82546846-82546865 MsG0380016367.01.T01:CDS 25.0%
! TCTTTCCAAAAATGGTTAAT+CGG + Chr3:82547288-82547307 MsG0380016367.01.T01:intron 25.0%
! TTACACCATTTGTAAGATAA+TGG - Chr3:82548180-82548199 None:intergenic 25.0%
! TTATGTATACGATCATAGTT+AGG + Chr3:82546982-82547001 MsG0380016367.01.T01:intron 25.0%
!! AACATTTTACATTTGGATGA+TGG + Chr3:82545445-82545464 MsG0380016367.01.T01:intron 25.0%
!! AATTTTATTCTTTACCGATC+TGG + Chr3:82544638-82544657 MsG0380016367.01.T01:intron 25.0%
!! AGAGTTTGGATAGATTTTAT+TGG + Chr3:82544665-82544684 MsG0380016367.01.T01:intron 25.0%
!! ATTCAAAAGTGGTATTGAAT+TGG + Chr3:82544545-82544564 MsG0380016367.01.T01:CDS 25.0%
!! CGGTTAAAAATGTAATTTTG+CGG + Chr3:82542984-82543003 MsG0380016367.01.T01:intron 25.0%
!! GAGTTTGGATAGATTTTATT+GGG + Chr3:82544666-82544685 MsG0380016367.01.T01:intron 25.0%
!! TATCATGCATATTTTCTTGT+CGG + Chr3:82546645-82546664 MsG0380016367.01.T01:intron 25.0%
!! TGACAAAAACAACACATTTT+GGG - Chr3:82548155-82548174 None:intergenic 25.0%
!! TTATTGACTACAATCAAGAA+AGG - Chr3:82545689-82545708 None:intergenic 25.0%
!! TTCAAAAGTGGTATTGAATT+GGG + Chr3:82544546-82544565 MsG0380016367.01.T01:CDS 25.0%
!! TTCCTTATTTGGATATCATA+AGG + Chr3:82547075-82547094 MsG0380016367.01.T01:CDS 25.0%
!! TTGACAAAAACAACACATTT+TGG - Chr3:82548156-82548175 None:intergenic 25.0%
!!! AAAAAGATTTTGACGACAAA+AGG - Chr3:82545339-82545358 None:intergenic 25.0%
!!! AAATTTTTATTTTCCACCTC+TGG - Chr3:82542899-82542918 None:intergenic 25.0%
!!! AAGTTACCATTATTTTGTTC+AGG + Chr3:82545842-82545861 MsG0380016367.01.T01:intron 25.0%
!!! AATTCAATACCACTTTTGAA+TGG - Chr3:82544546-82544565 None:intergenic 25.0%
!!! AGTTACCATTATTTTGTTCA+GGG + Chr3:82545843-82545862 MsG0380016367.01.T01:intron 25.0%
!!! CATAAAATTATTTTACCGCT+TGG - Chr3:82543293-82543312 None:intergenic 25.0%
!!! CTTATATTTTTATATCGAGC+AGG + Chr3:82547186-82547205 MsG0380016367.01.T01:CDS 25.0%
!!! GAAAAGGTTTTATGTTTGTT+TGG - Chr3:82544810-82544829 None:intergenic 25.0%
!!! TAAACTTATTTCTAAAGCTC+AGG - Chr3:82546191-82546210 None:intergenic 25.0%
!!! TAACCATTTTTGGAAAGAAT+CGG - Chr3:82547286-82547305 None:intergenic 25.0%
!!! TATATTTTTATATCGAGCAG+GGG + Chr3:82547188-82547207 MsG0380016367.01.T01:CDS 25.0%
!!! TGATTTTTTTGTGTGTGTTT+TGG + Chr3:82543903-82543922 MsG0380016367.01.T01:intron 25.0%
!!! TTATCCACTTTTATACATGA+AGG + Chr3:82544026-82544045 MsG0380016367.01.T01:intron 25.0%
AAACTCTTGTGAAACTGTTT+CGG + Chr3:82544100-82544119 MsG0380016367.01.T01:intron 30.0%
AAATCATGGCTGAAAACATA+AGG - Chr3:82543071-82543090 None:intergenic 30.0%
AAATCGACAATTGCTAATGA+TGG + Chr3:82546239-82546258 MsG0380016367.01.T01:intron 30.0%
AAGCTCAAATAGTTCTTCAA+TGG - Chr3:82543657-82543676 None:intergenic 30.0%
AATCCGATTCTTTCCAAAAA+TGG + Chr3:82547280-82547299 MsG0380016367.01.T01:intron 30.0%
AATCGACAATTGCTAATGAT+GGG + Chr3:82546240-82546259 MsG0380016367.01.T01:intron 30.0%
AGAAACCTGTTGTGAATAAA+GGG - Chr3:82547851-82547870 None:intergenic 30.0%
AGAATCCCTGAACAAAATAA+TGG - Chr3:82545851-82545870 None:intergenic 30.0%
ATGACATTACCATTCAAAAG+TGG + Chr3:82544534-82544553 MsG0380016367.01.T01:CDS 30.0%
CAGAACATGATTCATTTCAT+TGG + Chr3:82545377-82545396 MsG0380016367.01.T01:intron 30.0%
CTAACCTTCATGTATAAAAG+TGG - Chr3:82544033-82544052 None:intergenic 30.0%
CTAGTGAGATGTATAACTAT+CGG - Chr3:82542956-82542975 None:intergenic 30.0%
CTATTATAGGTTGTAGCATT+GGG + Chr3:82546342-82546361 MsG0380016367.01.T01:intron 30.0%
CTTACAAGTTTGTGTTAAGA+AGG + Chr3:82546294-82546313 MsG0380016367.01.T01:intron 30.0%
CTTGTAGAGCAAAATATGTT+AGG - Chr3:82547981-82548000 None:intergenic 30.0%
CTTTCCAAAAATGGTTAATC+GGG + Chr3:82547289-82547308 MsG0380016367.01.T01:intron 30.0%
GCAAAAACAGAAAGTAAGAT+CGG - Chr3:82546130-82546149 None:intergenic 30.0%
GTGAAGATATTCAAAATGTG+TGG + Chr3:82546370-82546389 MsG0380016367.01.T01:CDS 30.0%
GTGAGATTCTTCAAACATTT+AGG + Chr3:82548029-82548048 MsG0380016367.01.T01:exon 30.0%
TATACGATCATAGTTAGGAA+TGG + Chr3:82546987-82547006 MsG0380016367.01.T01:intron 30.0%
TATCGATGGCTATCTATTAT+AGG + Chr3:82546329-82546348 MsG0380016367.01.T01:intron 30.0%
TCAACCCATTATCTTACAAA+TGG + Chr3:82548172-82548191 MsG0380016367.01.T01:three_prime_UTR 30.0%
TCATCATTCACATAAAACCA+AGG - Chr3:82547787-82547806 None:intergenic 30.0%
TCTATTATAGGTTGTAGCAT+TGG + Chr3:82546341-82546360 MsG0380016367.01.T01:intron 30.0%
TGGTGTAATTTAATCAACTG+CGG + Chr3:82548192-82548211 MsG0380016367.01.T01:three_prime_UTR 30.0%
TGTAATGAGAAGTTCAACAT+TGG - Chr3:82544702-82544721 None:intergenic 30.0%
TTAAGTAATCGTATAGTTCG+AGG - Chr3:82545116-82545135 None:intergenic 30.0%
TTATGACTAACAAGATGGAT+TGG + Chr3:82546606-82546625 MsG0380016367.01.T01:intron 30.0%
TTTAGAAAATTTGCATGTGC+AGG + Chr3:82547040-82547059 MsG0380016367.01.T01:intron 30.0%
TTTATGCCAAGAACTAGAAT+GGG - Chr3:82547155-82547174 None:intergenic 30.0%
! AATTCCCGATTAACCATTTT+TGG - Chr3:82547296-82547315 None:intergenic 30.0%
! AGCCTTATGATATCCAAATA+AGG - Chr3:82547080-82547099 None:intergenic 30.0%
! ATGTTTTCAGCCATGATTTT+GGG + Chr3:82543072-82543091 MsG0380016367.01.T01:intron 30.0%
! CGCTTTATTGTAATCAACTT+TGG + Chr3:82547523-82547542 MsG0380016367.01.T01:intron 30.0%
! GACAAAAACAACACATTTTG+GGG - Chr3:82548154-82548173 None:intergenic 30.0%
! GATTTTTGTGTGGAGAAAAA+AGG + Chr3:82548007-82548026 MsG0380016367.01.T01:CDS 30.0%
! GTAAGTTTAAAATGAGCATC+CGG + Chr3:82542863-82542882 MsG0380016367.01.T01:intron 30.0%
! GTGTGTGAATTTAAGGTTAA+GGG - Chr3:82543609-82543628 None:intergenic 30.0%
! GTTCTAAATATGCCGTTTAT+TGG + Chr3:82546680-82546699 MsG0380016367.01.T01:intron 30.0%
! TATGTTTTCAGCCATGATTT+TGG + Chr3:82543071-82543090 MsG0380016367.01.T01:intron 30.0%
! TCAAAAGTGGTATTGAATTG+GGG + Chr3:82544547-82544566 MsG0380016367.01.T01:CDS 30.0%
! TGTTGCAAGAGGTTTTTATA+TGG + Chr3:82544378-82544397 MsG0380016367.01.T01:intron 30.0%
! TTCATTTTATGGCCCATTTA+GGG + Chr3:82546722-82546741 MsG0380016367.01.T01:CDS 30.0%
! TTTTTCTCCACACAAAAATC+TGG - Chr3:82548007-82548026 None:intergenic 30.0%
!! AAAATTATTTTACCGCTTGG+TGG - Chr3:82543290-82543309 None:intergenic 30.0%
!! ATACATGAAGGTTAGTCTTA+AGG + Chr3:82544038-82544057 MsG0380016367.01.T01:intron 30.0%
!! GAAAAACTTTGGAACATAGA+AGG - Chr3:82545889-82545908 None:intergenic 30.0%
!! TACATACATTGTAGCTTTGT+AGG + Chr3:82544235-82544254 MsG0380016367.01.T01:intron 30.0%
!! TTCTAAATTTTGGGTGAAAC+TGG + Chr3:82543044-82543063 MsG0380016367.01.T01:intron 30.0%
AAACCTGTTGTGAATAAAGG+GGG - Chr3:82547849-82547868 None:intergenic 35.0%
AAAGAAGAAGCAGTCATAGT+TGG + Chr3:82543336-82543355 MsG0380016367.01.T01:intron 35.0%
AACGAACAAGAGAAGAGAAA+AGG + Chr3:82543197-82543216 MsG0380016367.01.T01:intron 35.0%
AACGTTGGTGTGTGAATTTA+AGG - Chr3:82543616-82543635 None:intergenic 35.0%
AATTTGAACGCTACGGTTAT+TGG - Chr3:82546487-82546506 None:intergenic 35.0%
ACAGAAAGTAAGATCGGAAA+AGG - Chr3:82546124-82546143 None:intergenic 35.0%
ACATCTCACTAGAGTTATTG+CGG + Chr3:82542964-82542983 MsG0380016367.01.T01:intron 35.0%
ACTGCTTTAATCTTAAGGGT+AGG - Chr3:82547751-82547770 None:intergenic 35.0%
AGAAGGAGCTGATATTCTAT+TGG + Chr3:82546945-82546964 MsG0380016367.01.T01:CDS 35.0%
AGCAAAGTAATTTGATCGCT+TGG + Chr3:82546092-82546111 MsG0380016367.01.T01:intron 35.0%
AGTAAGATCGGAAAAGGAAA+TGG - Chr3:82546118-82546137 None:intergenic 35.0%
ATCAAGTAGATAACTATCGG+AGG + Chr3:82542832-82542851 MsG0380016367.01.T01:CDS 35.0%
ATTATGTTAGTGTCTTGGTG+CGG - Chr3:82545929-82545948 None:intergenic 35.0%
ATTCAGTTTCACCTCCTTAT+TGG + Chr3:82543462-82543481 MsG0380016367.01.T01:intron 35.0%
CAAAATTCCAGATGCTTTGA+AGG + Chr3:82544974-82544993 MsG0380016367.01.T01:CDS 35.0%
CAACAGTTGAACAAGGATAT+TGG - Chr3:82545223-82545242 None:intergenic 35.0%
CAATAATTTCCAATGCATGC+AGG - Chr3:82546152-82546171 None:intergenic 35.0%
CAGAAACCTGTTGTGAATAA+AGG - Chr3:82547852-82547871 None:intergenic 35.0%
CAGTCAATTAGAGAAAACCT+TGG + Chr3:82547767-82547786 MsG0380016367.01.T01:intron 35.0%
CTAGATAACAACCAATAAGG+AGG - Chr3:82543476-82543495 None:intergenic 35.0%
CTGCTTTAATCTTAAGGGTA+GGG - Chr3:82547750-82547769 None:intergenic 35.0%
CTTCAACAGTTATTGTCGTA+TGG + Chr3:82547228-82547247 MsG0380016367.01.T01:intron 35.0%
CTTTATTCACAACAGGTTTC+TGG + Chr3:82547850-82547869 MsG0380016367.01.T01:intron 35.0%
GAAACCTGTTGTGAATAAAG+GGG - Chr3:82547850-82547869 None:intergenic 35.0%
GAAGAAGCCATAATCGTAAT+CGG - Chr3:82543569-82543588 None:intergenic 35.0%
GTTCAAATCATGCAAATCCT+AGG - Chr3:82545641-82545660 None:intergenic 35.0%
GTTTATGCCAAGAACTAGAA+TGG - Chr3:82547156-82547175 None:intergenic 35.0%
TAGACCCATATTCTTCAGAT+GGG + Chr3:82545271-82545290 MsG0380016367.01.T01:CDS 35.0%
TCAATCTCCGATTACGATTA+TGG + Chr3:82543559-82543578 MsG0380016367.01.T01:intron 35.0%
TCATGTGAATCTTCCAGTTT+GGG + Chr3:82547346-82547365 MsG0380016367.01.T01:intron 35.0%
TCATGTGTACATCTTCAACT+AGG + Chr3:82545819-82545838 MsG0380016367.01.T01:intron 35.0%
TGAACTATTCTTGAAGGAAG+TGG + Chr3:82545656-82545675 MsG0380016367.01.T01:intron 35.0%
TGATGAAGAAAAGGTGATGA+TGG + Chr3:82547915-82547934 MsG0380016367.01.T01:CDS 35.0%
TGTGTTCACTTACAAGATCA+GGG - Chr3:82545148-82545167 None:intergenic 35.0%
TTACCAACACAAGTTCATAC+AGG - Chr3:82545615-82545634 None:intergenic 35.0%
TTAGACCCATATTCTTCAGA+TGG + Chr3:82545270-82545289 MsG0380016367.01.T01:CDS 35.0%
! AATAGAACCTTCAAAGCATC+TGG - Chr3:82544984-82545003 None:intergenic 35.0%
! ATTTAAGGTTAAGGGTGTGT+TGG - Chr3:82543601-82543620 None:intergenic 35.0%
! CAGTGAGCATTTTGTAATTC+AGG + Chr3:82544907-82544926 MsG0380016367.01.T01:intron 35.0%
! CTCACACTTGCCATAATTTT+TGG + Chr3:82545009-82545028 MsG0380016367.01.T01:intron 35.0%
! CTTTTTCTGTAGAGCTTTTG+TGG + Chr3:82544200-82544219 MsG0380016367.01.T01:intron 35.0%
! GGTGTGTGAATTTAAGGTTA+AGG - Chr3:82543610-82543629 None:intergenic 35.0%
! GTTCATTTTATGGCCCATTT+AGG + Chr3:82546721-82546740 MsG0380016367.01.T01:CDS 35.0%
! TAAAGTTGTTTCCTGAAACG+CGG - Chr3:82543989-82544008 None:intergenic 35.0%
! TTGGACTTTGAAAATGTAGC+AGG + Chr3:82544494-82544513 MsG0380016367.01.T01:intron 35.0%
!! ACATTGCTTGATTGTTTCTG+AGG + Chr3:82544719-82544738 MsG0380016367.01.T01:intron 35.0%
!! ATTGTCACTGATTTGCTCAT+TGG + Chr3:82546561-82546580 MsG0380016367.01.T01:intron 35.0%
!! CTTCAAAGCATCTGGAATTT+TGG - Chr3:82544976-82544995 None:intergenic 35.0%
!! GAATATTGAACGCTTTTTGC+AGG + Chr3:82544293-82544312 MsG0380016367.01.T01:intron 35.0%
!! GTTAGTCTTAAGGACATGTT+TGG + Chr3:82544048-82544067 MsG0380016367.01.T01:intron 35.0%
!! TAATTCAGGTTGCAAAAGCA+CGG + Chr3:82544921-82544940 MsG0380016367.01.T01:intron 35.0%
!! TTTTGTTTCAGCCAATTCAG+AGG + Chr3:82543926-82543945 MsG0380016367.01.T01:intron 35.0%
AAGGAGGTGAAACTGAATGA+TGG - Chr3:82543460-82543479 None:intergenic 40.0%
ACCTGAACAACAGTTGAACA+AGG - Chr3:82545230-82545249 None:intergenic 40.0%
ACCTGTTGGCAACCAATAAA+CGG - Chr3:82546695-82546714 None:intergenic 40.0%
ACTTTGCCATATACTTGGTC+TGG + Chr3:82546851-82546870 MsG0380016367.01.T01:CDS 40.0%
AGAAACCAGCTTGTGCATAA+TGG - Chr3:82546426-82546445 None:intergenic 40.0%
AGAGAAAGATGGAGAATGAG+AGG - Chr3:82543145-82543164 None:intergenic 40.0%
AGTCCAATGCTTCCCTAAAT+GGG - Chr3:82546737-82546756 None:intergenic 40.0%
ATATCCAAATAAGGAAGCCC+GGG - Chr3:82547071-82547090 None:intergenic 40.0%
ATGAAAACAGCAGGGACAAT+GGG - Chr3:82543118-82543137 None:intergenic 40.0%
ATGAGGGAAGATGAATCAGA+AGG + Chr3:82546928-82546947 MsG0380016367.01.T01:CDS 40.0%
ATGTTCCAGACCTTACAGAT+GGG - Chr3:82547600-82547619 None:intergenic 40.0%
CAAAAGCTATCAGATGAACC+CGG + Chr3:82546879-82546898 MsG0380016367.01.T01:CDS 40.0%
CAACACAAGTTCATACAGGA+AGG - Chr3:82545611-82545630 None:intergenic 40.0%
CATGCCCATCTGAAGAATAT+GGG - Chr3:82545278-82545297 None:intergenic 40.0%
CATTTCCATTATGCACAAGC+TGG + Chr3:82546418-82546437 MsG0380016367.01.T01:CDS 40.0%
CTAGAGGAATTTGAACGCTA+CGG - Chr3:82546494-82546513 None:intergenic 40.0%
CTCATGTGAATCTTCCAGTT+TGG + Chr3:82547345-82547364 MsG0380016367.01.T01:intron 40.0%
CTGACAGTAAAAAGACATGG+AGG - Chr3:82543699-82543718 None:intergenic 40.0%
CTGGAACATCATTTAGACAG+TGG + Chr3:82547611-82547630 MsG0380016367.01.T01:intron 40.0%
CTGTGTTCACTTACAAGATC+AGG - Chr3:82545149-82545168 None:intergenic 40.0%
CTTCCTGTATGAACTTGTGT+TGG + Chr3:82545609-82545628 MsG0380016367.01.T01:intron 40.0%
GATATCCAAATAAGGAAGCC+CGG - Chr3:82547072-82547091 None:intergenic 40.0%
GATGAGGCATACAATGAGAA+TGG + Chr3:82545083-82545102 MsG0380016367.01.T01:CDS 40.0%
GCAAATATGTGAGATGCTCA+TGG - Chr3:82546532-82546551 None:intergenic 40.0%
GCTCTGACAGTAAAAAGACA+TGG - Chr3:82543702-82543721 None:intergenic 40.0%
GGAGCTGATATTCTATTGGT+TGG + Chr3:82546949-82546968 MsG0380016367.01.T01:intron 40.0%
GGATCTAGACTTACTATCGA+TGG + Chr3:82546315-82546334 MsG0380016367.01.T01:intron 40.0%
TATTCTTCAGATGGGCATGA+CGG + Chr3:82545279-82545298 MsG0380016367.01.T01:CDS 40.0%
TCATGCCCATCTGAAGAATA+TGG - Chr3:82545279-82545298 None:intergenic 40.0%
TCCAAACTCTTAGACCAGAT+CGG - Chr3:82544655-82544674 None:intergenic 40.0%
TCCTTGTTCAACTGTTGTTC+AGG + Chr3:82545226-82545245 MsG0380016367.01.T01:intron 40.0%
TCTCTTGTTCGTTTCACGTT+CGG - Chr3:82543190-82543209 None:intergenic 40.0%
TGCAGTTCATATTCCCAAAC+TGG - Chr3:82547362-82547381 None:intergenic 40.0%
TGGCACTCAGTTCAATTTCA+AGG - Chr3:82546798-82546817 None:intergenic 40.0%
TGGTGAGTACTCGATGATTA+AGG + Chr3:82547870-82547889 MsG0380016367.01.T01:CDS 40.0%
TTAAGGTGAACAAGTACGCA+CGG - Chr3:82543417-82543436 None:intergenic 40.0%
TTACAGATGGGTAAGGGAAA+AGG - Chr3:82547588-82547607 None:intergenic 40.0%
TTGGCTGTCATAGAGAAAGA+TGG - Chr3:82543156-82543175 None:intergenic 40.0%
! AATCGTCGGGAATTAAGTTG+TGG + Chr3:82545577-82545596 MsG0380016367.01.T01:intron 40.0%
! ACTTGTGTTGGTAAAAGCCT+AGG + Chr3:82545621-82545640 MsG0380016367.01.T01:intron 40.0%
! AGAGGCTTTGACTGAAATGA+GGG + Chr3:82546912-82546931 MsG0380016367.01.T01:CDS 40.0%
! AGGACAATTTTCTTCCCAGA+AGG + Chr3:82548049-82548068 MsG0380016367.01.T01:three_prime_UTR 40.0%
! AGGTACGCGAGTTCATTTTA+TGG + Chr3:82546711-82546730 MsG0380016367.01.T01:intron 40.0%
! TAATGCTAGAAGTATGCTGC+TGG - Chr3:82545486-82545505 None:intergenic 40.0%
! TAGGTTGTAGCATTGGGTAT+CGG + Chr3:82546348-82546367 MsG0380016367.01.T01:intron 40.0%
! TAGTTCTTCAATGGTAGTGC+TGG - Chr3:82543648-82543667 None:intergenic 40.0%
! TTTTCCCTTACCCATCTGTA+AGG + Chr3:82547587-82547606 MsG0380016367.01.T01:intron 40.0%
!! AAGCAGTCATAGTTGGTGAA+GGG + Chr3:82543343-82543362 MsG0380016367.01.T01:intron 40.0%
!! AATTCAGGTTGCAAAAGCAC+GGG + Chr3:82544922-82544941 MsG0380016367.01.T01:intron 40.0%
!! TAGTTGGTGAAGGGTAGAAA+TGG + Chr3:82543352-82543371 MsG0380016367.01.T01:intron 40.0%
!! TGCTGGTTTAAGATCAACGT+TGG - Chr3:82543631-82543650 None:intergenic 40.0%
!!! ACGATTTTAACTCTGGAGAG+TGG + Chr3:82543253-82543272 MsG0380016367.01.T01:intron 40.0%
AAATGAACTCGCGTACCTGT+TGG - Chr3:82546709-82546728 None:intergenic 45.0%
ACCGATCTGGTCTAAGAGTT+TGG + Chr3:82544651-82544670 MsG0380016367.01.T01:intron 45.0%
ACTCGATGATTAAGGCTGGT+GGG + Chr3:82547878-82547897 MsG0380016367.01.T01:CDS 45.0%
AGAACCTGGTATGCTGCAAT+TGG - Chr3:82547125-82547144 None:intergenic 45.0%
AGAGGAGACATGAAAACAGC+AGG - Chr3:82543127-82543146 None:intergenic 45.0%
AGCCAAAAGAGATATGAGGG+GGG + Chr3:82543007-82543026 MsG0380016367.01.T01:intron 45.0%
ATCCGGTAGTTATGTACCAG+AGG + Chr3:82542880-82542899 MsG0380016367.01.T01:intron 45.0%
ATTGTATGCCTCATCCTGTG+GGG - Chr3:82545078-82545097 None:intergenic 45.0%
CACCTCTGGTACATAACTAC+CGG - Chr3:82542885-82542904 None:intergenic 45.0%
CAGAAAAAGCCGAGAGCAAA+CGG - Chr3:82544189-82544208 None:intergenic 45.0%
CAGACCTTACAGATGGGTAA+GGG - Chr3:82547594-82547613 None:intergenic 45.0%
CATGAAAACAGCAGGGACAA+TGG - Chr3:82543119-82543138 None:intergenic 45.0%
CATTGTATGCCTCATCCTGT+GGG - Chr3:82545079-82545098 None:intergenic 45.0%
CGGAGCCAAAAGAGATATGA+GGG + Chr3:82543004-82543023 MsG0380016367.01.T01:intron 45.0%
GAAGAGAAAAGGAACGTTGC+TGG + Chr3:82543208-82543227 MsG0380016367.01.T01:intron 45.0%
GACGGCATTGTTAGAGAAGA+TGG + Chr3:82545297-82545316 MsG0380016367.01.T01:CDS 45.0%
GAGCCAAAAGAGATATGAGG+GGG + Chr3:82543006-82543025 MsG0380016367.01.T01:intron 45.0%
GAGGAGACATGAAAACAGCA+GGG - Chr3:82543126-82543145 None:intergenic 45.0%
GAGTACTCGATGATTAAGGC+TGG + Chr3:82547874-82547893 MsG0380016367.01.T01:CDS 45.0%
GAGTCCAATGCTTCCCTAAA+TGG - Chr3:82546738-82546757 None:intergenic 45.0%
GATGTTCCAGACCTTACAGA+TGG - Chr3:82547601-82547620 None:intergenic 45.0%
GCTGATCTTCTATTACGACG+AGG - Chr3:82543955-82543974 None:intergenic 45.0%
GGAGCCAAAAGAGATATGAG+GGG + Chr3:82543005-82543024 MsG0380016367.01.T01:intron 45.0%
GTTCAGCCAGACCAAGTATA+TGG - Chr3:82546860-82546879 None:intergenic 45.0%
TAAGGTGAACAAGTACGCAC+GGG - Chr3:82543416-82543435 None:intergenic 45.0%
TACTCGATGATTAAGGCTGG+TGG + Chr3:82547877-82547896 MsG0380016367.01.T01:CDS 45.0%
TCACAAGTGAAGTCACCACT+GGG - Chr3:82543814-82543833 None:intergenic 45.0%
TCAGTTCAGGCCCAAAATCA+TGG - Chr3:82543085-82543104 None:intergenic 45.0%
TCATTGTATGCCTCATCCTG+TGG - Chr3:82545080-82545099 None:intergenic 45.0%
TGACCCCCTTTATTCACAAC+AGG + Chr3:82547843-82547862 MsG0380016367.01.T01:intron 45.0%
TGTTAGGATGATGTCAGCAC+CGG - Chr3:82547965-82547984 None:intergenic 45.0%
TTCTTGAAGGAAGTGGCAAG+TGG + Chr3:82545663-82545682 MsG0380016367.01.T01:intron 45.0%
TTGTAAACAAGCTGTAGCCC+AGG + Chr3:82545779-82545798 MsG0380016367.01.T01:CDS 45.0%
! AAAGCCTCTCTGTAGTTTGC+CGG - Chr3:82546901-82546920 None:intergenic 45.0%
! ATTTTATGAAAGGCCCGTGC+TGG + Chr3:82545964-82545983 MsG0380016367.01.T01:intron 45.0%
! CAAGCTGCCAGATTTTTGTG+TGG + Chr3:82547997-82548016 MsG0380016367.01.T01:CDS 45.0%
! GACTTTTACGTTCCACCAAG+CGG + Chr3:82543275-82543294 MsG0380016367.01.T01:intron 45.0%
! GAGAGGCTTTGACTGAAATG+AGG + Chr3:82546911-82546930 MsG0380016367.01.T01:CDS 45.0%
! GCTCAAAGCATTTGACAGTG+TGG + Chr3:82548079-82548098 MsG0380016367.01.T01:three_prime_UTR 45.0%
! GTCAAATGCTTTGAGCTCTC+TGG - Chr3:82548075-82548094 None:intergenic 45.0%
!! GAAGCAGTCATAGTTGGTGA+AGG + Chr3:82543342-82543361 MsG0380016367.01.T01:intron 45.0%
!! GATATGATGGATGGTCGTGT+TGG + Chr3:82546009-82546028 MsG0380016367.01.T01:CDS 45.0%
!! TTGAACGCTTTTTGCAGGTG+AGG + Chr3:82544298-82544317 MsG0380016367.01.T01:intron 45.0%
!!! CTGTTTTTGCCTGCATGCAT+TGG + Chr3:82546140-82546159 MsG0380016367.01.T01:intron 45.0%
!!! AAAAATTTAAAATAAACATT+CGG + Chr3:82542911-82542930 MsG0380016367.01.T01:intron 5.0%
!!! TAAAAAAAAACATTTTTAAA+GGG + Chr3:82544589-82544608 MsG0380016367.01.T01:intron 5.0%
!!! TTTAAAATAGATTAAATATT+TGG - Chr3:82546818-82546837 None:intergenic 5.0%
AAACAGCAGGGACAATGGGT+CGG - Chr3:82543114-82543133 None:intergenic 50.0%
ACGACCATCCATCATATCGC+TGG - Chr3:82546007-82546026 None:intergenic 50.0%
ACGCTACGGTTATTGGCGAA+AGG - Chr3:82546480-82546499 None:intergenic 50.0%
AGCTTGCATCCGTTTGCTCT+CGG + Chr3:82544177-82544196 MsG0380016367.01.T01:intron 50.0%
ATCCGGGCATAGCACCAATT+GGG - Chr3:82544331-82544350 None:intergenic 50.0%
CACATTACCAGCGACAACAG+CGG - Chr3:82543745-82543764 None:intergenic 50.0%
CAGCATACCAGGTTCTTCTC+TGG + Chr3:82547129-82547148 MsG0380016367.01.T01:CDS 50.0%
CCAGACCTTACAGATGGGTA+AGG - Chr3:82547595-82547614 None:intergenic 50.0%
CCTTACCCATCTGTAAGGTC+TGG + Chr3:82547592-82547611 MsG0380016367.01.T01:intron 50.0%
CGACCATCCATCATATCGCT+GGG - Chr3:82546006-82546025 None:intergenic 50.0%
CGGTAGTTATGTACCAGAGG+TGG + Chr3:82542883-82542902 MsG0380016367.01.T01:intron 50.0%
CGTAATCGGAGATTGAAGCG+TGG - Chr3:82543555-82543574 None:intergenic 50.0%
CTCACAAGTGAAGTCACCAC+TGG - Chr3:82543815-82543834 None:intergenic 50.0%
CTCGATGATTAAGGCTGGTG+GGG + Chr3:82547879-82547898 MsG0380016367.01.T01:CDS 50.0%
CTCTATGACAGCCAAGCTTG+TGG + Chr3:82543161-82543180 MsG0380016367.01.T01:intron 50.0%
GACCATCCATCATATCGCTG+GGG - Chr3:82546005-82546024 None:intergenic 50.0%
GCAGCTACAAGATGCACTAG+AGG - Chr3:82546510-82546529 None:intergenic 50.0%
GCGGAGCCAAAAGAGATATG+AGG + Chr3:82543003-82543022 MsG0380016367.01.T01:intron 50.0%
GTGCACTAATGTCACGTCCA+AGG - Chr3:82542787-82542806 None:intergenic 50.0%
TACACATCGATCCGCGTTTC+AGG + Chr3:82543975-82543994 MsG0380016367.01.T01:intron 50.0%
TATGACAGCCAAGCTTGTGG+TGG + Chr3:82543164-82543183 MsG0380016367.01.T01:intron 50.0%
TCATCCTGTGGGGGTCTAAA+GGG - Chr3:82545068-82545087 None:intergenic 50.0%
TGGTATGCTGCAATTGGCAG+CGG - Chr3:82547119-82547138 None:intergenic 50.0%
TTACTGTGCCTTAGACGTGC+CGG + Chr3:82547943-82547962 MsG0380016367.01.T01:CDS 50.0%
TTGTATGCCTCATCCTGTGG+GGG - Chr3:82545077-82545096 None:intergenic 50.0%
! AAGCCTCTCTGTAGTTTGCC+GGG - Chr3:82546900-82546919 None:intergenic 50.0%
! GCCGTTTATTGGTTGCCAAC+AGG + Chr3:82546691-82546710 MsG0380016367.01.T01:intron 50.0%
! GTTGCAAAAGCACGGGATGT+TGG + Chr3:82544929-82544948 MsG0380016367.01.T01:CDS 50.0%
! TACAGGCTTGGTTGGAGACA+CGG + Chr3:82544353-82544372 MsG0380016367.01.T01:CDS 50.0%
! TGCCCCCCTCATATCTCTTT+TGG - Chr3:82543012-82543031 None:intergenic 50.0%
! TGGCCCATTTAGGGAAGCAT+TGG + Chr3:82546731-82546750 MsG0380016367.01.T01:CDS 50.0%
! TGTTGTCGCTGGTAATGTGC+CGG + Chr3:82543746-82543765 MsG0380016367.01.T01:CDS 50.0%
! TTGGACTCAAACCCCCGTTT+TGG + Chr3:82546750-82546769 MsG0380016367.01.T01:CDS 50.0%
! TTTATATCGAGCAGGGGCAC+AGG + Chr3:82547194-82547213 MsG0380016367.01.T01:CDS 50.0%
! TTTGAGCTCTCTGGCCTTCT+GGG - Chr3:82548066-82548085 None:intergenic 50.0%
!! AACGCTTTTTGCAGGTGAGG+AGG + Chr3:82544301-82544320 MsG0380016367.01.T01:intron 50.0%
!! CTCTGGCCCATTCTAGTTCT+TGG + Chr3:82547146-82547165 MsG0380016367.01.T01:CDS 50.0%
ATCCTGTGGGGGTCTAAAGG+GGG - Chr3:82545066-82545085 None:intergenic 55.0%
CAACCAAGCCTGTAGCATCC+GGG - Chr3:82544347-82544366 None:intergenic 55.0%
CATCCGGGCATAGCACCAAT+TGG - Chr3:82544332-82544351 None:intergenic 55.0%
CATCCTGTGGGGGTCTAAAG+GGG - Chr3:82545067-82545086 None:intergenic 55.0%
CCAACCAAGCCTGTAGCATC+CGG - Chr3:82544348-82544367 None:intergenic 55.0%
CTCATCCTGTGGGGGTCTAA+AGG - Chr3:82545069-82545088 None:intergenic 55.0%
CTTTAGACCCCCACAGGATG+AGG + Chr3:82545067-82545086 MsG0380016367.01.T01:intron 55.0%
GAACAAGTACGCACGGGACA+TGG - Chr3:82543410-82543429 None:intergenic 55.0%
GAACCCGGCAAACTACAGAG+AGG + Chr3:82546894-82546913 MsG0380016367.01.T01:CDS 55.0%
GAAGCCCGGGCTTCCTTATT+TGG + Chr3:82547064-82547083 MsG0380016367.01.T01:CDS 55.0%
GAATGGGCCAGAGAAGAACC+TGG - Chr3:82547139-82547158 None:intergenic 55.0%
GCTGCCAATTGCAGCATACC+AGG + Chr3:82547118-82547137 MsG0380016367.01.T01:CDS 55.0%
TCCGGGCATAGCACCAATTG+GGG - Chr3:82544330-82544349 None:intergenic 55.0%
TGACCACATCTGCTCCAGCA+CGG - Chr3:82545981-82546000 None:intergenic 55.0%
TTGCATGTGCAGGTGAAGCC+CGG + Chr3:82547050-82547069 MsG0380016367.01.T01:intron 55.0%
! AGCCCCAGCGATATGATGGA+TGG + Chr3:82546000-82546019 MsG0380016367.01.T01:CDS 55.0%
! CTTTGAGCTCTCTGGCCTTC+TGG - Chr3:82548067-82548086 None:intergenic 55.0%
! GAGACACGGACTGTTGCAAG+AGG + Chr3:82544367-82544386 MsG0380016367.01.T01:CDS 55.0%
! GGGTAGGGTGTCAAGCATCA+TGG - Chr3:82547735-82547754 None:intergenic 55.0%
!! GAGCAGGGGCACAGGTTTTA+TGG + Chr3:82547202-82547221 MsG0380016367.01.T01:CDS 55.0%
ACGTTCGGCCACCACAAGCT+TGG - Chr3:82543175-82543194 None:intergenic 60.0%
AGTCACCACTGGGTTCCAGC+AGG - Chr3:82543804-82543823 None:intergenic 60.0%
ATGCCCGGATGCTACAGGCT+TGG + Chr3:82544341-82544360 MsG0380016367.01.T01:CDS 60.0%
CCGGGCATAGCACCAATTGG+GGG - Chr3:82544329-82544348 None:intergenic 60.0%
CGACGAGGACGCCTCTGAAT+TGG - Chr3:82543940-82543959 None:intergenic 60.0%
CGAGCAGCTCTCGATGCTGA+AGG + Chr3:82546039-82546058 MsG0380016367.01.T01:CDS 60.0%
GACCACATCTGCTCCAGCAC+GGG - Chr3:82545980-82545999 None:intergenic 60.0%
GCAGGGACAATGGGTCGGTT+CGG - Chr3:82543109-82543128 None:intergenic 60.0%
GGTCAGCCCCAGCGATATGA+TGG + Chr3:82545996-82546015 MsG0380016367.01.T01:CDS 60.0%
GTGCTATGCCCGGATGCTAC+AGG + Chr3:82544336-82544355 MsG0380016367.01.T01:CDS 60.0%
TGCATGTGCAGGTGAAGCCC+GGG + Chr3:82547051-82547070 MsG0380016367.01.T01:intron 60.0%
TTCCCCCTTTAGACCCCCAC+AGG + Chr3:82545061-82545080 MsG0380016367.01.T01:intron 60.0%
TTCGAAGCCGCTGTTGTCGC+TGG + Chr3:82543735-82543754 MsG0380016367.01.T01:CDS 60.0%
! CAGGGACAATGGGTCGGTTC+GGG - Chr3:82543108-82543127 None:intergenic 60.0%
! CCGGATGCTACAGGCTTGGT+TGG + Chr3:82544345-82544364 MsG0380016367.01.T01:CDS 60.0%
!! CCCCCAATTGGTGCTATGCC+CGG + Chr3:82544326-82544345 MsG0380016367.01.T01:CDS 60.0%
!! TGTCAGCACCGGCACGTCTA+AGG - Chr3:82547954-82547973 None:intergenic 60.0%
CTGCACCTGCTGGAACCCAG+TGG + Chr3:82543796-82543815 MsG0380016367.01.T01:CDS 65.0%
GCCTCCTGTACCGCCTACAC+CGG + Chr3:82543773-82543792 MsG0380016367.01.T01:CDS 65.0%
TGGGTTCCAGCAGGTGCAGC+CGG - Chr3:82543795-82543814 None:intergenic 65.0%
!! GGGTCGGTTCGGGTCAGTTC+AGG - Chr3:82543098-82543117 None:intergenic 65.0%
!! GGTGAGGAGGCACCCCCAAT+TGG + Chr3:82544314-82544333 MsG0380016367.01.T01:intron 65.0%
CCAGCAGGTGCAGCCGGTGT+AGG - Chr3:82543789-82543808 None:intergenic 70.0%
GCAGCCGGTGTAGGCGGTAC+AGG - Chr3:82543780-82543799 None:intergenic 70.0%
GCAGGTGCAGCCGGTGTAGG+CGG - Chr3:82543786-82543805 None:intergenic 70.0%
GCCGGTGTAGGCGGTACAGG+AGG - Chr3:82543777-82543796 None:intergenic 70.0%
GGCCCGTGCTGGAGCAGATG+TGG + Chr3:82545975-82545994 MsG0380016367.01.T01:intron 70.0%
! CCTACACCGGCTGCACCTGC+TGG + Chr3:82543786-82543805 MsG0380016367.01.T01:CDS 70.0%
! GGCGGTACAGGAGGCGCATC+CGG - Chr3:82543768-82543787 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 82542774 82548308 82542774 ID=MsG0380016367.01;Name=MsG0380016367.01
Chr3 mRNA 82542774 82548308 82542774 ID=MsG0380016367.01.T01;Parent=MsG0380016367.01;Name=MsG0380016367.01.T01;_AED=0.40;_eAED=0.51;_QI=0|0.28|0.33|0.93|0.92|0.86|15|255|489
Chr3 exon 82542774 82542862 82542774 ID=MsG0380016367.01.T01:exon:10871;Parent=MsG0380016367.01.T01
Chr3 exon 82543719 82543817 82543719 ID=MsG0380016367.01.T01:exon:10872;Parent=MsG0380016367.01.T01
Chr3 exon 82543937 82543989 82543937 ID=MsG0380016367.01.T01:exon:10873;Parent=MsG0380016367.01.T01
Chr3 exon 82544315 82544388 82544315 ID=MsG0380016367.01.T01:exon:10874;Parent=MsG0380016367.01.T01
Chr3 exon 82544513 82544568 82544513 ID=MsG0380016367.01.T01:exon:10875;Parent=MsG0380016367.01.T01
Chr3 exon 82544929 82544995 82544929 ID=MsG0380016367.01.T01:exon:10876;Parent=MsG0380016367.01.T01
Chr3 exon 82545083 82545158 82545083 ID=MsG0380016367.01.T01:exon:10877;Parent=MsG0380016367.01.T01
Chr3 exon 82545262 82545318 82545262 ID=MsG0380016367.01.T01:exon:10878;Parent=MsG0380016367.01.T01
Chr3 exon 82545745 82545800 82545745 ID=MsG0380016367.01.T01:exon:10879;Parent=MsG0380016367.01.T01
Chr3 exon 82545976 82546071 82545976 ID=MsG0380016367.01.T01:exon:10880;Parent=MsG0380016367.01.T01
Chr3 exon 82546351 82546492 82546351 ID=MsG0380016367.01.T01:exon:10881;Parent=MsG0380016367.01.T01
Chr3 exon 82546713 82546966 82546713 ID=MsG0380016367.01.T01:exon:10882;Parent=MsG0380016367.01.T01
Chr3 exon 82547062 82547244 82547062 ID=MsG0380016367.01.T01:exon:10883;Parent=MsG0380016367.01.T01
Chr3 exon 82547865 82548118 82547865 ID=MsG0380016367.01.T01:exon:10884;Parent=MsG0380016367.01.T01
Chr3 exon 82548140 82548308 82548140 ID=MsG0380016367.01.T01:exon:10885;Parent=MsG0380016367.01.T01
Chr3 CDS 82542774 82542862 82542774 ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3 CDS 82543719 82543817 82543719 ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3 CDS 82543937 82543989 82543937 ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3 CDS 82544315 82544388 82544315 ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3 CDS 82544513 82544568 82544513 ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3 CDS 82544929 82544995 82544929 ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3 CDS 82545083 82545158 82545083 ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3 CDS 82545262 82545318 82545262 ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3 CDS 82545745 82545800 82545745 ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3 CDS 82545976 82546071 82545976 ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3 CDS 82546351 82546492 82546351 ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3 CDS 82546713 82546966 82546713 ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3 CDS 82547062 82547244 82547062 ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3 CDS 82547865 82548032 82547865 ID=MsG0380016367.01.T01:cds;Parent=MsG0380016367.01.T01
Chr3 three_prime_UTR 82548033 82548118 82548033 ID=MsG0380016367.01.T01:three_prime_utr;Parent=MsG0380016367.01.T01
Chr3 three_prime_UTR 82548140 82548308 82548140 ID=MsG0380016367.01.T01:three_prime_utr;Parent=MsG0380016367.01.T01
Gene Sequence

>MsG0380016367.01.T01

ATGTATGTCGCCTTGGACGTGACATTAGTGCACTTTTGTTTCACATTCTGTAATGATAATCAAGTAGATAACTATCGGAGGTACAAAATAGCTAGTGATGCAGATTTCGAAGCCGCTGTTGTCGCTGGTAATGTGCCGGATGCGCCTCCTGTACCGCCTACACCGGCTGCACCTGCTGGAACCCAGTGCCAATTCAGAGGCGTCCTCGTCGTAATAGAAGATCAGCTACACATCGATCCGCGTGAGGAGGCACCCCCAATTGGTGCTATGCCCGGATGCTACAGGCTTGGTTGGAGACACGGACTGTTGCAAGAGCAGGATCAATCACAAGCTAATATGACATTACCATTCAAAAGTGGTATTGAATTGGGGTTGCAAAAGCACGGGATGTTGGTGTTAACAGTGTTGTGCTCTTCCAAAATTCCAGATGCTTTGAAGGATGAGGCATACAATGAGAATGGCTTAGTGCCTCGAACTATACGATTACTTAAGAATAAATACCCTGATCTTGTAAATGTTGCATTAGACCCATATTCTTCAGATGGGCATGACGGCATTGTTAGAGAAGATGGAGTTATCATGAATGATGAGACTGTTCATCAGCTTTGTAAACAAGCTGTAGCCCAGGCCCGTGCTGGAGCAGATGTGGTCAGCCCCAGCGATATGATGGATGGTCGTGTTGGAGCAATGCGAGCAGCTCTCGATGCTGAAGGCTTTCAGCATGTTGTAGCATTGGGTATCGGTGAAGATATTCAAAATGTGTGGCATATAAATGATTTTATAAGTGAAGCATTTCCATTATGCACAAGCTGGTTTCTTTCTTATGCAAGTTATGAACAATTTTATCTTCCTTTCGCCAATAACCGTACGCGAGTTCATTTTATGGCCCATTTAGGGAAGCATTGGACTCAAACCCCCGTTTTGGAGATAAAAAGACGTATGTATTACCTTGAAATTGAACTGAGTGCCAAATATTTAATCTATTTTAAATTATTGATTATTTACTTTGCCATATACTTGGTCTGGCTGAACAAAAGCTATCAGATGAACCCGGCAAACTACAGAGAGGCTTTGACTGAAATGAGGGAAGATGAATCAGAAGGAGCTGATATTCTATTGGTGAAGCCCGGGCTTCCTTATTTGGATATCATAAGGCTACTCAGAGATAATTCTCCGCTGCCAATTGCAGCATACCAGGTTCTTCTCTGGCCCATTCTAGTTCTTGGCATAAACAAAAGTGATGCTTATATTTTTATATCGAGCAGGGGCACAGGTTTTATGGTTGCTTCAACAGTTATTGTCGTTTCTGGTGAGTACTCGATGATTAAGGCTGGTGGGGCTCTTAAAATGATTGATGAAGAAAAGGTGATGATGGAGTCATTACTGTGCCTTAGACGTGCCGGTGCTGACATCATCCTAACATATTTTGCTCTACAAGCTGCCAGATTTTTGTGTGGAGAAAAAAGGTGA
Protein sequence

>MsG0380016367.01.T01

MYVALDVTLVHFCFTFCNDNQVDNYRRYKIASDADFEAAVVAGNVPDAPPVPPTPAAPAGTQCQFRGVLVVIEDQLHIDPREEAPPIGAMPGCYRLGWRHGLLQEQDQSQANMTLPFKSGIELGLQKHGMLVLTVLCSSKIPDALKDEAYNENGLVPRTIRLLKNKYPDLVNVALDPYSSDGHDGIVREDGVIMNDETVHQLCKQAVAQARAGADVVSPSDMMDGRVGAMRAALDAEGFQHVVALGIGEDIQNVWHINDFISEAFPLCTSWFLSYASYEQFYLPFANNRTRVHFMAHLGKHWTQTPVLEIKRRMYYLEIELSAKYLIYFKLLIIYFAIYLVWLNKSYQMNPANYREALTEMREDESEGADILLVKPGLPYLDIIRLLRDNSPLPIAAYQVLLWPILVLGINKSDAYIFISSRGTGFMVASTVIVVSGEYSMIKAGGALKMIDEEKVMMESLLCLRRAGADIILTYFALQAARFLCGEKR*