Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017135.01.T01 | KEH35750.1 | 85.217 | 115 | 17 | 0 | 1 | 115 | 1 | 115 | 7.09E-63 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017135.01.T01 | Q9ZST9 | 81.416 | 113 | 21 | 0 | 1 | 113 | 1 | 113 | 1.41E-60 | 189 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017135.01.T01 | A0A072VC56 | 85.217 | 115 | 17 | 0 | 1 | 115 | 1 | 115 | 3.39e-63 | 200 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048281.01 | MsG0380017135.01 | 0.803289 | 3.742394e-49 | 1.873397e-46 |
| MsG0080048754.01 | MsG0380017135.01 | 0.822197 | 2.693865e-53 | 2.239230e-50 |
| MsG0080048800.01 | MsG0380017135.01 | 0.804395 | 2.205200e-49 | 1.135712e-46 |
| MsG0080049059.01 | MsG0380017135.01 | -0.839302 | 1.718997e-57 | 2.363937e-54 |
| MsG0180000567.01 | MsG0380017135.01 | -0.814966 | 1.176915e-51 | 8.010190e-49 |
| MsG0180001006.01 | MsG0380017135.01 | -0.813995 | 1.929411e-51 | 1.279137e-48 |
| MsG0180001551.01 | MsG0380017135.01 | -0.838908 | 2.174375e-57 | 2.954160e-54 |
| MsG0180002426.01 | MsG0380017135.01 | 0.804579 | 2.019239e-49 | 1.044894e-46 |
| MsG0180002912.01 | MsG0380017135.01 | -0.813288 | 2.760681e-51 | 1.795484e-48 |
| MsG0180003409.01 | MsG0380017135.01 | -0.885311 | 9.068404e-72 | 6.194000e-68 |
| MsG0180003898.01 | MsG0380017135.01 | -0.801560 | 8.500353e-49 | 4.071893e-46 |
| MsG0180004079.01 | MsG0380017135.01 | -0.816738 | 4.737169e-52 | 3.384324e-49 |
| MsG0180004566.01 | MsG0380017135.01 | -0.812241 | 4.679960e-51 | 2.959940e-48 |
| MsG0180004761.01 | MsG0380017135.01 | 0.861077 | 1.321735e-63 | 3.693472e-60 |
| MsG0180005817.01 | MsG0380017135.01 | 0.804162 | 2.465866e-49 | 1.262412e-46 |
| MsG0180006069.01 | MsG0380017135.01 | -0.868964 | 4.414687e-66 | 1.627880e-62 |
| MsG0180006226.01 | MsG0380017135.01 | 0.818189 | 2.232361e-52 | 1.659541e-49 |
| MsG0280010695.01 | MsG0380017135.01 | 0.884090 | 2.580718e-71 | 1.679857e-67 |
| MsG0280011403.01 | MsG0380017135.01 | -0.816532 | 5.267387e-52 | 3.741926e-49 |
| MsG0380015793.01 | MsG0380017135.01 | 0.817705 | 2.870960e-52 | 2.106128e-49 |
| MsG0380016346.01 | MsG0380017135.01 | -0.810714 | 1.004909e-50 | 6.102364e-48 |
| MsG0380016367.01 | MsG0380017135.01 | 0.818731 | 1.681669e-52 | 1.269000e-49 |
| MsG0380017135.01 | MsG0380017804.01 | 0.830025 | 3.704520e-55 | 3.856561e-52 |
| MsG0380017135.01 | MsG0380017915.01 | -0.812469 | 4.173103e-51 | 2.655696e-48 |
| MsG0380017135.01 | MsG0380017935.01 | 0.823073 | 1.685668e-53 | 1.436610e-50 |
| MsG0380017135.01 | MsG0380017998.01 | -0.845132 | 4.913546e-59 | 8.107561e-56 |
| MsG0380017135.01 | MsG0380018058.01 | 0.815419 | 9.334831e-52 | 6.432469e-49 |
| MsG0380017135.01 | MsG0380018060.01 | -0.810132 | 1.341964e-50 | 8.024349e-48 |
| MsG0380017135.01 | MsG0480018126.01 | -0.815744 | 7.902231e-52 | 5.494477e-49 |
| MsG0380017135.01 | MsG0480018333.01 | -0.875120 | 3.958160e-68 | 1.827041e-64 |
| MsG0380017135.01 | MsG0480018571.01 | -0.802740 | 4.860031e-49 | 2.399159e-46 |
| MsG0380017135.01 | MsG0480019038.01 | -0.847570 | 1.063479e-59 | 1.898304e-56 |
| MsG0380017135.01 | MsG0480019486.01 | -0.829933 | 3.900744e-55 | 4.050375e-52 |
| MsG0380017135.01 | MsG0480019836.01 | 0.803139 | 4.019478e-49 | 2.004402e-46 |
| MsG0380017135.01 | MsG0480019975.01 | 0.857549 | 1.513182e-62 | 3.748809e-59 |
| MsG0380017135.01 | MsG0480020065.01 | -0.813919 | 2.005779e-51 | 1.327010e-48 |
| MsG0380017135.01 | MsG0480020090.01 | -0.810808 | 9.587242e-51 | 5.836426e-48 |
| MsG0380017135.01 | MsG0480021237.01 | -0.813972 | 1.953004e-51 | 1.293957e-48 |
| MsG0380017135.01 | MsG0480021476.01 | 0.838589 | 2.628482e-57 | 3.537002e-54 |
| MsG0380017135.01 | MsG0480022274.01 | -0.837946 | 3.850005e-57 | 5.080032e-54 |
| MsG0380017135.01 | MsG0480022480.01 | -0.823580 | 1.282910e-53 | 1.109077e-50 |
| MsG0380017135.01 | MsG0480022530.01 | -0.804508 | 2.088831e-49 | 1.078903e-46 |
| MsG0380017135.01 | MsG0480022971.01 | -0.811050 | 8.498319e-51 | 5.207076e-48 |
| MsG0380017135.01 | MsG0480023088.01 | -0.804608 | 1.990975e-49 | 1.031041e-46 |
| MsG0380017135.01 | MsG0480023176.01 | 0.811346 | 7.330659e-51 | 4.526424e-48 |
| MsG0380017135.01 | MsG0480023318.01 | -0.806880 | 6.635398e-50 | 3.642626e-47 |
| MsG0380017135.01 | MsG0480023480.01 | 0.865399 | 6.073921e-65 | 1.973380e-61 |
| MsG0380017135.01 | MsG0480023674.01 | 0.869091 | 4.014686e-66 | 1.487548e-62 |
| MsG0380017135.01 | MsG0480023869.01 | 0.836793 | 7.597105e-57 | 9.677054e-54 |
| MsG0380017135.01 | MsG0480023947.01 | -0.813105 | 3.028316e-51 | 1.959632e-48 |
| MsG0380017135.01 | MsG0580024570.01 | 0.851502 | 8.509901e-61 | 1.725986e-57 |
| MsG0380017135.01 | MsG0580024575.01 | -0.809439 | 1.891113e-50 | 1.110365e-47 |
| MsG0380017135.01 | MsG0580024656.01 | 0.821971 | 3.040363e-53 | 2.510939e-50 |
| MsG0380017135.01 | MsG0580025134.01 | -0.804078 | 2.567592e-49 | 1.311696e-46 |
| MsG0380017135.01 | MsG0580027345.01 | -0.803954 | 2.723895e-49 | 1.387170e-46 |
| MsG0380017135.01 | MsG0580027626.01 | -0.815357 | 9.634574e-52 | 6.627851e-49 |
| MsG0380017135.01 | MsG0580029504.01 | 0.833500 | 5.147012e-56 | 5.938314e-53 |
| MsG0380017135.01 | MsG0580029668.01 | 0.851991 | 6.185908e-61 | 1.274024e-57 |
| MsG0380017135.01 | MsG0680031651.01 | -0.804211 | 2.408497e-49 | 1.234568e-46 |
| MsG0380017135.01 | MsG0680033745.01 | -0.800175 | 1.630616e-48 | 7.541741e-46 |
| MsG0380017135.01 | MsG0680035777.01 | -0.861717 | 8.433383e-64 | 2.408046e-60 |
| MsG0380017135.01 | MsG0780038495.01 | -0.807278 | 5.465510e-50 | 3.031631e-47 |
| MsG0380017135.01 | MsG0780038645.01 | -0.857815 | 1.262213e-62 | 3.154675e-59 |
| MsG0380017135.01 | MsG0780039462.01 | 0.821685 | 3.540707e-53 | 2.900664e-50 |
| MsG0380017135.01 | MsG0780039841.01 | -0.835162 | 1.969802e-56 | 2.388885e-53 |
| MsG0380017135.01 | MsG0780040160.01 | -0.807356 | 5.261134e-50 | 2.924091e-47 |
| MsG0380017135.01 | MsG0780040442.01 | -0.814308 | 1.645852e-51 | 1.100537e-48 |
| MsG0380017135.01 | MsG0780040699.01 | 0.863849 | 1.855747e-64 | 5.706914e-61 |
| MsG0380017135.01 | MsG0780040861.01 | -0.835267 | 1.853696e-56 | 2.255379e-53 |
| MsG0380017135.01 | MsG0780041014.01 | 0.821554 | 3.796328e-53 | 3.098584e-50 |
| MsG0380017135.01 | MsG0780041637.01 | 0.812107 | 5.007719e-51 | 3.155589e-48 |
| MsG0380017135.01 | MsG0880041883.01 | -0.841583 | 4.351649e-58 | 6.423226e-55 |
| MsG0380017135.01 | MsG0880042957.01 | -0.869288 | 3.463878e-66 | 1.292966e-62 |
| MsG0380017135.01 | MsG0880043262.01 | -0.800612 | 1.328452e-48 | 6.212870e-46 |
| MsG0380017135.01 | MsG0880043745.01 | -0.810187 | 1.305558e-50 | 7.817596e-48 |
| MsG0380017135.01 | MsG0880046099.01 | 0.844054 | 9.585968e-59 | 1.529242e-55 |
| MsG0380017135.01 | MsG0880046251.01 | 0.816617 | 5.042962e-52 | 3.590837e-49 |
| MsG0380017135.01 | MsG0880046331.01 | 0.824175 | 9.307512e-54 | 8.182669e-51 |
| MsG0380017135.01 | MsG0880046753.01 | -0.829242 | 5.743707e-55 | 5.845413e-52 |
| MsG0380017135.01 | MsG0880046947.01 | -0.806267 | 8.939546e-50 | 4.831180e-47 |
| MsG0380017135.01 | MsG0880047360.01 | 0.842922 | 1.923511e-58 | 2.960514e-55 |
| MsG0280006475.01 | MsG0380017135.01 | 0.860033 | 2.738490e-63 | 7.382984e-60 |
| MsG0280006544.01 | MsG0380017135.01 | -0.848337 | 6.534451e-60 | 1.195256e-56 |
| MsG0280006942.01 | MsG0380017135.01 | 0.825174 | 5.413860e-54 | 4.897957e-51 |
| MsG0280007071.01 | MsG0380017135.01 | -0.816126 | 6.495158e-52 | 4.563197e-49 |
| MsG0280007133.01 | MsG0380017135.01 | 0.898616 | 4.454930e-77 | 5.305672e-73 |
| MsG0280007607.01 | MsG0380017135.01 | -0.829002 | 6.566169e-55 | 6.634162e-52 |
| MsG0280007609.01 | MsG0380017135.01 | -0.803274 | 3.769457e-49 | 1.886242e-46 |
| MsG0280007715.01 | MsG0380017135.01 | -0.824692 | 7.031593e-54 | 6.275017e-51 |
| MsG0280008912.01 | MsG0380017135.01 | 0.839325 | 1.695498e-57 | 2.333315e-54 |
| MsG0280010196.01 | MsG0380017135.01 | -0.805022 | 1.631202e-49 | 8.538065e-47 |
| MsG0280010275.01 | MsG0380017135.01 | 0.839356 | 1.663891e-57 | 2.292138e-54 |
| MsG0280010276.01 | MsG0380017135.01 | 0.808421 | 3.122300e-50 | 1.784514e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017135.01.T01 | MTR_3g101630 | 85.217 | 115 | 17 | 0 | 1 | 115 | 1 | 115 | 8.59e-67 | 200 |
| MsG0380017135.01.T01 | MTR_3g101630 | 86.726 | 113 | 15 | 0 | 1 | 113 | 1 | 113 | 1.44e-66 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380017135.01.T01 | AT4G33350 | 53.333 | 120 | 39 | 3 | 1 | 103 | 1 | 120 | 2.11e-31 | 111 |
| MsG0380017135.01.T01 | AT4G33350 | 53.333 | 120 | 39 | 3 | 1 | 103 | 1 | 120 | 3.29e-31 | 112 |
Find 40 sgRNAs with CRISPR-Local
Find 48 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCGAGTGTGAGATTGAATT+AGG | 0.307685 | 3:-92477367 | None:intergenic |
| GGAGGTTCCGGCGAGGGATT+TGG | 0.319748 | 3:-92477432 | None:intergenic |
| ACTCGACTCGAATTAACTAT+TGG | 0.338401 | 3:+92477125 | MsG0380017135.01.T01:five_prime_UTR |
| AGGAAGCTTCAGCGTCTTCT+TGG | 0.380666 | 3:-92477541 | None:intergenic |
| CAAGGTGGTTACAGTGTTGA+TGG | 0.389724 | 3:-92477307 | None:intergenic |
| TCGGATTCTGTCTTAATTGT+GGG | 0.393939 | 3:-92477171 | None:intergenic |
| CTCGGATTCTGTCTTAATTG+TGG | 0.407460 | 3:-92477172 | None:intergenic |
| GTTAAAGCGGCGGCGAAAGC+GGG | 0.432701 | 3:-92477395 | None:intergenic |
| GTGAGATTGAATTAGGGTTC+CGG | 0.435865 | 3:-92477360 | None:intergenic |
| CTCGACTCGAATTAACTATT+GGG | 0.450926 | 3:+92477126 | MsG0380017135.01.T01:five_prime_UTR |
| GACGGTGTAAACGGAGGTTC+CGG | 0.452524 | 3:-92477444 | None:intergenic |
| GCGAGTGTGAGATTGAATTA+GGG | 0.455909 | 3:-92477366 | None:intergenic |
| AGCGGCGGCGAAAGCGGGGT+TGG | 0.456106 | 3:-92477390 | None:intergenic |
| GAGGGATTTGGCGACGTTGT+TGG | 0.462263 | 3:-92477420 | None:intergenic |
| GGAACTACTGACGGTGTAAA+CGG | 0.467319 | 3:-92477453 | None:intergenic |
| CATCAGAACGAATTCATTGT+TGG | 0.485434 | 3:-92477474 | None:intergenic |
| ACGCTGAAGCTTCCTTGCTC+AGG | 0.498165 | 3:+92477549 | MsG0380017135.01.T01:CDS |
| GCTGAAGGTGCTAAGTCCAT+TGG | 0.515881 | 3:+92477503 | MsG0380017135.01.T01:CDS |
| TTCATTGTTGGAACTACTGA+CGG | 0.538242 | 3:-92477462 | None:intergenic |
| GTTTATCCACGATCTAGTAA+AGG | 0.539568 | 3:+92477201 | MsG0380017135.01.T01:five_prime_UTR |
| TCTAATCCTTTACTAGATCG+TGG | 0.567177 | 3:-92477207 | None:intergenic |
| GTAAACGGAGGTTCCGGCGA+GGG | 0.577581 | 3:-92477438 | None:intergenic |
| GCGAAAGCAAAGCAATCCAA+TGG | 0.584246 | 3:-92477519 | None:intergenic |
| TGAATTTCGAGGCAATGCTA+AGG | 0.584914 | 3:+92477672 | MsG0380017135.01.T01:CDS |
| TGTCTTCAAAACGAGTTGCA+AGG | 0.588693 | 3:-92477325 | None:intergenic |
| AGTTAAAGCGGCGGCGAAAG+CGG | 0.589283 | 3:-92477396 | None:intergenic |
| AGAGGAACGTTACCTGAGCA+AGG | 0.598379 | 3:-92477561 | None:intergenic |
| GGACTTAGCACCTTCAGCAT+CGG | 0.600686 | 3:-92477498 | None:intergenic |
| GACGTTGTTGGAAGTTAAAG+CGG | 0.609660 | 3:-92477408 | None:intergenic |
| TCGTGGATAAACTATAAGCT+CGG | 0.613169 | 3:-92477190 | None:intergenic |
| AACGTCGCCAAATCCCTCGC+CGG | 0.619652 | 3:+92477425 | MsG0380017135.01.T01:CDS |
| AACCGCGAAAATGATAGAAG+CGG | 0.620119 | 3:-92477281 | None:intergenic |
| TTAAAGCGGCGGCGAAAGCG+GGG | 0.621674 | 3:-92477394 | None:intergenic |
| AATAGTTAATTCGAGTCGAG+TGG | 0.643283 | 3:-92477123 | None:intergenic |
| AAATGGAGTCACAAGGACAG+TGG | 0.653796 | 3:+92477255 | MsG0380017135.01.T01:exon |
| TGTAAACGGAGGTTCCGGCG+AGG | 0.668767 | 3:-92477439 | None:intergenic |
| GTTCTGATGTCCGATGCTGA+AGG | 0.674395 | 3:+92477488 | MsG0380017135.01.T01:CDS |
| GTTGTTGGAAGTTAAAGCGG+CGG | 0.684073 | 3:-92477405 | None:intergenic |
| CTTCAAAACGAGTTGCAAGG+TGG | 0.698132 | 3:-92477322 | None:intergenic |
| ACTACTGACGGTGTAAACGG+AGG | 0.722610 | 3:-92477450 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAATTACTGAGAG+AGG | - | Chr3:92477582-92477601 | None:intergenic | 20.0% |
| !! | ATTTGTAGAAGAAACAAAAA+TGG | + | Chr3:92477238-92477257 | MsG0380017135.01.T01:exon | 20.0% |
| !! | AATGTTTTGCTCGTTGTTTT+AGG | + | Chr3:92477633-92477652 | MsG0380017135.01.T01:intron | 30.0% |
| AATAGTTAATTCGAGTCGAG+TGG | - | Chr3:92477126-92477145 | None:intergenic | 35.0% | |
| CATCAGAACGAATTCATTGT+TGG | - | Chr3:92477477-92477496 | None:intergenic | 35.0% | |
| GAAACAAAAATGGAGTCACA+AGG | + | Chr3:92477248-92477267 | MsG0380017135.01.T01:exon | 35.0% | |
| GTTTATCCACGATCTAGTAA+AGG | + | Chr3:92477201-92477220 | MsG0380017135.01.T01:five_prime_UTR | 35.0% | |
| TCACGGAAAAATGAATTTCG+AGG | + | Chr3:92477661-92477680 | MsG0380017135.01.T01:CDS | 35.0% | |
| TCGGATTCTGTCTTAATTGT+GGG | - | Chr3:92477174-92477193 | None:intergenic | 35.0% | |
| TCGTGGATAAACTATAAGCT+CGG | - | Chr3:92477193-92477212 | None:intergenic | 35.0% | |
| TCTAATCCTTTACTAGATCG+TGG | - | Chr3:92477210-92477229 | None:intergenic | 35.0% | |
| TTCATTGTTGGAACTACTGA+CGG | - | Chr3:92477465-92477484 | None:intergenic | 35.0% | |
| ! | ACTCGACTCGAATTAACTAT+TGG | + | Chr3:92477125-92477144 | MsG0380017135.01.T01:five_prime_UTR | 35.0% |
| ! | CTCGACTCGAATTAACTATT+GGG | + | Chr3:92477126-92477145 | MsG0380017135.01.T01:five_prime_UTR | 35.0% |
| AACCGCGAAAATGATAGAAG+CGG | - | Chr3:92477284-92477303 | None:intergenic | 40.0% | |
| CTCGGATTCTGTCTTAATTG+TGG | - | Chr3:92477175-92477194 | None:intergenic | 40.0% | |
| GAAGACACAAAAAAACTCGC+CGG | + | Chr3:92477341-92477360 | MsG0380017135.01.T01:CDS | 40.0% | |
| GACGTTGTTGGAAGTTAAAG+CGG | - | Chr3:92477411-92477430 | None:intergenic | 40.0% | |
| GCGAGTGTGAGATTGAATTA+GGG | - | Chr3:92477369-92477388 | None:intergenic | 40.0% | |
| GTGAGATTGAATTAGGGTTC+CGG | - | Chr3:92477363-92477382 | None:intergenic | 40.0% | |
| TGAATTTCGAGGCAATGCTA+AGG | + | Chr3:92477672-92477691 | MsG0380017135.01.T01:CDS | 40.0% | |
| TGCGAGTGTGAGATTGAATT+AGG | - | Chr3:92477370-92477389 | None:intergenic | 40.0% | |
| TGTCTTCAAAACGAGTTGCA+AGG | - | Chr3:92477328-92477347 | None:intergenic | 40.0% | |
| ! | ATCCGCTTCTATCATTTTCG+CGG | + | Chr3:92477279-92477298 | MsG0380017135.01.T01:CDS | 40.0% |
| !!! | CGTTGTTTTAGGTTCGATCA+CGG | + | Chr3:92477644-92477663 | MsG0380017135.01.T01:intron | 40.0% |
| AAATGGAGTCACAAGGACAG+TGG | + | Chr3:92477255-92477274 | MsG0380017135.01.T01:exon | 45.0% | |
| CTTCAAAACGAGTTGCAAGG+TGG | - | Chr3:92477325-92477344 | None:intergenic | 45.0% | |
| GCGAAAGCAAAGCAATCCAA+TGG | - | Chr3:92477522-92477541 | None:intergenic | 45.0% | |
| GGAACTACTGACGGTGTAAA+CGG | - | Chr3:92477456-92477475 | None:intergenic | 45.0% | |
| GTTGTTGGAAGTTAAAGCGG+CGG | - | Chr3:92477408-92477427 | None:intergenic | 45.0% | |
| ! | CAAGGTGGTTACAGTGTTGA+TGG | - | Chr3:92477310-92477329 | None:intergenic | 45.0% |
| ACTACTGACGGTGTAAACGG+AGG | - | Chr3:92477453-92477472 | None:intergenic | 50.0% | |
| AGAGGAACGTTACCTGAGCA+AGG | - | Chr3:92477564-92477583 | None:intergenic | 50.0% | |
| AGGAAGCTTCAGCGTCTTCT+TGG | - | Chr3:92477544-92477563 | None:intergenic | 50.0% | |
| GGACTTAGCACCTTCAGCAT+CGG | - | Chr3:92477501-92477520 | None:intergenic | 50.0% | |
| GTTCTGATGTCCGATGCTGA+AGG | + | Chr3:92477488-92477507 | MsG0380017135.01.T01:CDS | 50.0% | |
| !! | GCTGAAGGTGCTAAGTCCAT+TGG | + | Chr3:92477503-92477522 | MsG0380017135.01.T01:CDS | 50.0% |
| ACGCTGAAGCTTCCTTGCTC+AGG | + | Chr3:92477549-92477568 | MsG0380017135.01.T01:CDS | 55.0% | |
| AGTTAAAGCGGCGGCGAAAG+CGG | - | Chr3:92477399-92477418 | None:intergenic | 55.0% | |
| GACGGTGTAAACGGAGGTTC+CGG | - | Chr3:92477447-92477466 | None:intergenic | 55.0% | |
| GAGGGATTTGGCGACGTTGT+TGG | - | Chr3:92477423-92477442 | None:intergenic | 55.0% | |
| AACGTCGCCAAATCCCTCGC+CGG | + | Chr3:92477425-92477444 | MsG0380017135.01.T01:CDS | 60.0% | |
| GTAAACGGAGGTTCCGGCGA+GGG | - | Chr3:92477441-92477460 | None:intergenic | 60.0% | |
| GTTAAAGCGGCGGCGAAAGC+GGG | - | Chr3:92477398-92477417 | None:intergenic | 60.0% | |
| TGTAAACGGAGGTTCCGGCG+AGG | - | Chr3:92477442-92477461 | None:intergenic | 60.0% | |
| TTAAAGCGGCGGCGAAAGCG+GGG | - | Chr3:92477397-92477416 | None:intergenic | 60.0% | |
| GGAGGTTCCGGCGAGGGATT+TGG | - | Chr3:92477435-92477454 | None:intergenic | 65.0% | |
| AGCGGCGGCGAAAGCGGGGT+TGG | - | Chr3:92477393-92477412 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 92477121 | 92477706 | 92477121 | ID=MsG0380017135.01;Name=MsG0380017135.01 |
| Chr3 | mRNA | 92477121 | 92477706 | 92477121 | ID=MsG0380017135.01.T01;Parent=MsG0380017135.01;Name=MsG0380017135.01.T01;_AED=0.35;_eAED=0.35;_QI=136|1|1|1|0.12|0.11|9|0|121 |
| Chr3 | exon | 92477121 | 92477570 | 92477121 | ID=MsG0380017135.01.T01:exon:12576;Parent=MsG0380017135.01.T01 |
| Chr3 | exon | 92477655 | 92477706 | 92477655 | ID=MsG0380017135.01.T01:exon:12577;Parent=MsG0380017135.01.T01 |
| Chr3 | five_prime_UTR | 92477121 | 92477256 | 92477121 | ID=MsG0380017135.01.T01:five_prime_utr;Parent=MsG0380017135.01.T01 |
| Chr3 | CDS | 92477257 | 92477570 | 92477257 | ID=MsG0380017135.01.T01:cds;Parent=MsG0380017135.01.T01 |
| Chr3 | CDS | 92477655 | 92477706 | 92477655 | ID=MsG0380017135.01.T01:cds;Parent=MsG0380017135.01.T01 |
| Gene Sequence |
| Protein sequence |
