AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018995.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018995.01.T02 MTR_4g021730 93.333 75 5 0 1 75 1 75 2.99e-44 137
MsG0480018995.01.T02 MTR_4g021725 81.333 75 14 0 1 75 1 75 4.33e-38 121
MsG0480018995.01.T02 MTR_7g061018 56.522 69 27 2 8 75 12 78 1.42e-13 59.7
MsG0480018995.01.T01 MTR_4g021730 93.333 75 5 0 1 75 1 75 2.99e-44 137
MsG0480018995.01.T01 MTR_4g021725 81.333 75 14 0 1 75 1 75 4.33e-38 121
MsG0480018995.01.T01 MTR_7g061018 56.522 69 27 2 8 75 12 78 1.42e-13 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 28 sgRNAs with CRISPR-Local

Find 426 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCACAGAAACCGTGATTT+TGG 0.184588 4:-13000026 MsG0480018995.01.T01:CDS
CCATTTCAGCACCTTCAAAT+TGG 0.222108 4:+12999984 None:intergenic
TAATATATTCTATTTATAAT+AGG 0.305439 4:+12999628 None:intergenic
GGTTTCTGTGGTTTCGGCCT+CGG 0.316189 4:+13000036 None:intergenic
AATCACGGTTTCTGTGGTTT+CGG 0.340586 4:+13000030 None:intergenic
ATACACACAATTACACATAT+TGG 0.348552 4:+12999843 None:intergenic
CTCTTGAAGCAGAGATATAT+TGG 0.361555 4:-12999868 MsG0480018995.01.T01:three_prime_UTR
AGCACCTTCAAATTGGATCT+TGG 0.368934 4:+12999991 None:intergenic
AGCTATGGTTGCTTTGTGTT+TGG 0.396298 4:-12992593 MsG0480018995.01.T01:three_prime_UTR
GCACTTCATTTGCAGTTGCA+AGG 0.406733 4:+12999908 None:intergenic
CCAATTTGAAGGTGCTGAAA+TGG 0.415709 4:-12999984 MsG0480018995.01.T01:CDS
AGCTATGATCGCTTTGTGTT+TGG 0.422847 4:-12999701 MsG0480018995.01.T01:intron
AGAACATTTGAATTTGATGA+AGG 0.454645 4:+12999749 None:intergenic
CACTTCATTTGCAGTTGCAA+GGG 0.477731 4:+12999909 None:intergenic
GCCCAAAATCACGGTTTCTG+TGG 0.518698 4:+13000024 None:intergenic
CAATTTGAAGGTGCTGAAAT+GGG 0.519160 4:-12999983 MsG0480018995.01.T01:CDS
AGAATAATATGAGGTGGTCA+TGG 0.525912 4:-12999778 MsG0480018995.01.T01:three_prime_UTR
CTGGCCAAGATCCAATTTGA+AGG 0.549688 4:-12999995 MsG0480018995.01.T01:CDS
TACTTTGCAGATGCAGCAAG+AGG 0.554610 4:-13000078 MsG0480018995.01.T01:intron
CAATATATCTCTGCTTCAAG+AGG 0.560197 4:+12999869 None:intergenic
GAGGATGGTGGCTGCAAGTG+TGG 0.564753 4:-12999950 MsG0480018995.01.T01:CDS
TGAAGGTGTTATGAGAGCTA+TGG 0.586513 4:-12992608 MsG0480018995.01.T01:intron
TGAAATGGGTGTTGCAGCTG+AGG 0.589074 4:-12999969 MsG0480018995.01.T01:CDS
ATGGGTGTTGCAGCTGAGGA+TGG 0.598628 4:-12999965 MsG0480018995.01.T01:CDS
CAGACCGACGCCCAAAATCA+CGG 0.612271 4:+13000015 None:intergenic
AGATGCAGCAAGAGGTCTAG+TGG 0.623429 4:-13000070 MsG0480018995.01.T01:CDS
GGTGTTGCAGCTGAGGATGG+TGG 0.628303 4:-12999962 MsG0480018995.01.T01:CDS
TAGTGGATTGAGCTATGCCG+AGG 0.657350 4:-13000053 MsG0480018995.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTAAAAATATATAA+GGG + Chr4:13000355-13000374 None:intergenic 0.0%
!!! TTTTTTTTTAAAAATATATA+AGG + Chr4:13000356-13000375 None:intergenic 0.0%
!! AAATTTAAGAAATTCAAAAA+TGG + Chr4:12996571-12996590 None:intergenic 10.0%
!! AATATATTTCTCAATTATAT+CGG + Chr4:12998235-12998254 None:intergenic 10.0%
!! CATAATAGATAATAATTAAT+AGG - Chr4:12997965-12997984 MsG0480018995.01.T01:intron 10.0%
!! TAATTTGAATATTAATCAAT+TGG - Chr4:12996805-12996824 MsG0480018995.01.T01:intron 10.0%
!! TCAAATCAATAAAAAAAATT+AGG + Chr4:12996621-12996640 None:intergenic 10.0%
!! TTAAATAAGAAAATTAGATA+AGG - Chr4:13000036-13000055 MsG0480018995.01.T01:CDS 10.0%
!! TTAATTAGAATAATATAAAG+TGG - Chr4:13000699-13000718 MsG0480018995.01.T01:intron 10.0%
!!! AAAAATTGAATTTATTTTCA+AGG - Chr4:12998013-12998032 MsG0480018995.01.T01:intron 10.0%
!!! AAAATTGAATTTATTTTCAA+GGG - Chr4:12998014-12998033 MsG0480018995.01.T01:intron 10.0%
!!! AAACAATACTTAAATTTTAA+AGG + Chr4:12998691-12998710 None:intergenic 10.0%
!!! AAATATATATTATTTCTAGA+CGG + Chr4:13000073-13000092 None:intergenic 10.0%
!!! AACAATACTTAAATTTTAAA+GGG + Chr4:12998690-12998709 None:intergenic 10.0%
!!! ATATTTTTTTTATGAATTGA+AGG + Chr4:12998650-12998669 None:intergenic 10.0%
!!! CATTTTGTTTAAAATTATTT+TGG - Chr4:12995769-12995788 MsG0480018995.01.T01:intron 10.0%
!!! GAATGAAATTTTTTAAAAAA+AGG - Chr4:12999704-12999723 MsG0480018995.01.T01:intron 10.0%
!!! TATTTATATTTCTTTTATGA+GGG - Chr4:12992934-12992953 MsG0480018995.01.T01:intron 10.0%
!! AAACCCAAATAAAATTTATT+TGG + Chr4:12995619-12995638 None:intergenic 15.0%
!! AACCCAAATAAAATTTATTT+GGG + Chr4:12995618-12995637 None:intergenic 15.0%
!! AAGATTGAATTTAGTTAAAA+AGG + Chr4:12998857-12998876 None:intergenic 15.0%
!! AATATTTAACACTAAATGTT+TGG + Chr4:12996430-12996449 None:intergenic 15.0%
!! ATAGAATAAATAAGTAACTT+TGG + Chr4:12999908-12999927 None:intergenic 15.0%
!! CATATAACAATTAAGTTATT+GGG + Chr4:12997926-12997945 None:intergenic 15.0%
!! CTAATTAAAATATTGATATG+AGG + Chr4:13000012-13000031 None:intergenic 15.0%
!! GAGAAATTATGAAAAATTAA+TGG + Chr4:12999579-12999598 None:intergenic 15.0%
!! GATCATTAAATTAATATACT+TGG - Chr4:12992863-12992882 MsG0480018995.01.T01:intron 15.0%
!! TAACCAAAAAAAAAAAACAT+TGG + Chr4:12995147-12995166 None:intergenic 15.0%
!! TAGAATAAATAAGTAACTTT+GGG + Chr4:12999907-12999926 None:intergenic 15.0%
!! TTCATAGAAAATTTATTGTT+TGG + Chr4:12998308-12998327 None:intergenic 15.0%
!! TTGTCAAAAAAAAATATAAG+TGG - Chr4:12998355-12998374 MsG0480018995.01.T01:intron 15.0%
!!! AAAAGAATCCTTTTAAAATA+TGG + Chr4:12999840-12999859 None:intergenic 15.0%
!!! AAAATTAAGTCTAAAATTTG+AGG + Chr4:12998756-12998775 None:intergenic 15.0%
!!! AATAGTCATATAATTTTGTT+TGG + Chr4:12992672-12992691 None:intergenic 15.0%
!!! ATAAAACACGTTTTTAAAAA+AGG + Chr4:12995866-12995885 None:intergenic 15.0%
!!! ATAATAGAAAGTGAATATTT+TGG + Chr4:12997156-12997175 None:intergenic 15.0%
!!! ATAGTAAATTTATTGACTAT+TGG + Chr4:12994375-12994394 None:intergenic 15.0%
!!! ATTTTGGTGATTTAATATTT+TGG + Chr4:12997140-12997159 None:intergenic 15.0%
!!! ATTTTTCAATAAATAAAGCT+CGG + Chr4:12997819-12997838 None:intergenic 15.0%
!!! GTATTTATATTTCTTTTATG+AGG - Chr4:12992933-12992952 MsG0480018995.01.T01:intron 15.0%
!!! TAATTTTTCATAATTTCTCT+AGG - Chr4:12999580-12999599 MsG0480018995.01.T01:intron 15.0%
!!! TTAAGTATTGTTTTTTGTTT+TGG - Chr4:12998698-12998717 MsG0480018995.01.T01:intron 15.0%
!!! TTGTTTGAATATAAGTTTTT+TGG - Chr4:12993775-12993794 MsG0480018995.01.T01:intron 15.0%
!!! TTTGAATTTCTTAAATTTTG+AGG - Chr4:12996573-12996592 MsG0480018995.01.T01:intron 15.0%
!!! TTTTAATTTATGATGATTCT+TGG - Chr4:12992708-12992727 MsG0480018995.01.T01:intron 15.0%
!! AAATGGAATTTAAAGAGTTA+AGG + Chr4:12996554-12996573 None:intergenic 20.0%
!! AACTGTGTTAAAACATATAA+TGG + Chr4:12994218-12994237 None:intergenic 20.0%
!! AAGAACAAATTTATATTGGT+TGG + Chr4:12992533-12992552 None:intergenic 20.0%
!! AAGCAAAGAATAATATTGAT+TGG + Chr4:12999164-12999183 None:intergenic 20.0%
!! AAGTTGTCCATAAAAAAAAT+AGG - Chr4:12999768-12999787 MsG0480018995.01.T01:three_prime_UTR 20.0%
!! AATATGCAAAACATAATCTA+AGG + Chr4:12999931-12999950 None:intergenic 20.0%
!! ACAAGATAAAATGAAGAATA+GGG + Chr4:12997318-12997337 None:intergenic 20.0%
!! ACTATTTAAAGGTTTCATTA+GGG + Chr4:12993973-12993992 None:intergenic 20.0%
!! AGTCAATAGCTATAATTATA+AGG + Chr4:12994983-12995002 None:intergenic 20.0%
!! AGTGTACAATAATAATTCAT+CGG - Chr4:12993205-12993224 MsG0480018995.01.T01:intron 20.0%
!! AGTTGTCCATAAAAAAAATA+GGG - Chr4:12999769-12999788 MsG0480018995.01.T01:three_prime_UTR 20.0%
!! ATTTATGGATCTCTTTATAA+CGG + Chr4:12997079-12997098 None:intergenic 20.0%
!! CAAAAAAAAAAAACATTGGT+TGG + Chr4:12995143-12995162 None:intergenic 20.0%
!! CCAATAACTTAATTGTTATA+TGG - Chr4:12997924-12997943 MsG0480018995.01.T01:intron 20.0%
!! CCATATAACAATTAAGTTAT+TGG + Chr4:12997927-12997946 None:intergenic 20.0%
!! CTCATTACTTTATATTTACA+TGG + Chr4:12994605-12994624 None:intergenic 20.0%
!! TAAAAAACAACAAAGAGTTA+AGG + Chr4:12999270-12999289 None:intergenic 20.0%
!! TACAGTAAGAAATAAAAACA+AGG + Chr4:12997449-12997468 None:intergenic 20.0%
!! TAGATGTTCATATAACAATT+AGG - Chr4:12997653-12997672 MsG0480018995.01.T01:intron 20.0%
!! TATTGAAAAATACAATGACT+TGG - Chr4:12997828-12997847 MsG0480018995.01.T01:intron 20.0%
!! TCATATAACAATTAGGATAT+TGG - Chr4:12997660-12997679 MsG0480018995.01.T01:intron 20.0%
!! TCTACATCAATAATTGTTAA+AGG - Chr4:12996345-12996364 MsG0480018995.01.T01:intron 20.0%
!! TGAATAAAGAAACATAAAAG+TGG - Chr4:12998324-12998343 MsG0480018995.01.T01:intron 20.0%
!! TGCAAAGAACAAATTTATAT+TGG + Chr4:12992537-12992556 None:intergenic 20.0%
!! TTATAAAGAGATCCATAAAT+AGG - Chr4:12997079-12997098 MsG0480018995.01.T01:intron 20.0%
!! TTATAGATTATCAATCAACT+AGG + Chr4:12993910-12993929 None:intergenic 20.0%
!!! AAATTTGATTTGTGTTTAGA+AGG - Chr4:12992908-12992927 MsG0480018995.01.T01:intron 20.0%
!!! AATACTTAAATTTTAAAGGG+TGG + Chr4:12998687-12998706 None:intergenic 20.0%
!!! AATTTGATTTGTGTTTAGAA+GGG - Chr4:12992909-12992928 MsG0480018995.01.T01:intron 20.0%
!!! ACCTCATATTATTCTAAAAA+AGG + Chr4:12993592-12993611 None:intergenic 20.0%
!!! ACTCATATCCATATTTTAAA+AGG - Chr4:12999829-12999848 MsG0480018995.01.T01:three_prime_UTR 20.0%
!!! ATGTCTAAATACTTTTGATT+TGG + Chr4:12995502-12995521 None:intergenic 20.0%
!!! ATTCAATTTTTACTTCTCAA+AGG + Chr4:12998004-12998023 None:intergenic 20.0%
!!! CAACCAATGTTTTTTTTTTT+TGG - Chr4:12995141-12995160 MsG0480018995.01.T01:intron 20.0%
!!! GTTTTTATTTCTTACTGTAT+GGG - Chr4:12997450-12997469 MsG0480018995.01.T01:intron 20.0%
!!! TCCTTTTTTAGAATAATATG+AGG - Chr4:12993588-12993607 MsG0480018995.01.T01:intron 20.0%
!!! TCTTTTTTTAAGTAACGATT+AGG - Chr4:13000165-13000184 MsG0480018995.01.T01:intron 20.0%
!!! TGAACTAAATCTAAAATATC+TGG - Chr4:12994414-12994433 MsG0480018995.01.T01:intron 20.0%
!!! TGTCTAAATACTTTTGATTT+GGG + Chr4:12995501-12995520 None:intergenic 20.0%
!!! TGTTTTTATTTCTTACTGTA+TGG - Chr4:12997449-12997468 MsG0480018995.01.T01:intron 20.0%
!!! TTGTTTTTTCAGTACTTTTT+TGG - Chr4:12999345-12999364 MsG0480018995.01.T01:intron 20.0%
!!! TTTTTTAGAATAATATGAGG+TGG - Chr4:12993591-12993610 MsG0480018995.01.T01:intron 20.0%
!!! TTTTTTTTCTCTATCTTCAT+AGG - Chr4:12992787-12992806 MsG0480018995.01.T01:intron 20.0%
! AAAATATCTGGTCTCTTATA+AGG - Chr4:12994426-12994445 MsG0480018995.01.T01:intron 25.0%
! AAATTTATACAGCTGAATTG+TGG + Chr4:12996919-12996938 None:intergenic 25.0%
! AAGATAGTCACAAAATAGAA+AGG + Chr4:12994893-12994912 None:intergenic 25.0%
! AAGATTCATTGTTCTTAAGA+CGG + Chr4:12998185-12998204 None:intergenic 25.0%
! AAGTTTCTATAACCAAACAT+TGG + Chr4:12995180-12995199 None:intergenic 25.0%
! ACTAAATAAGGAGAAATACT+TGG - Chr4:12995464-12995483 MsG0480018995.01.T01:intron 25.0%
! AGAACATTTGAATTTGATGA+AGG + Chr4:12993629-12993648 None:intergenic 25.0%
! ATAAGGACTAGATTTATGAA+AGG - Chr4:12994443-12994462 MsG0480018995.01.T01:intron 25.0%
! ATAATCACCACAAAACTAAA+AGG - Chr4:12997575-12997594 MsG0480018995.01.T01:intron 25.0%
! ATACACACAATTACACATAT+TGG + Chr4:12993535-12993554 None:intergenic 25.0%
! ATGATCAAATTGCATCAAAA+AGG - Chr4:12996659-12996678 MsG0480018995.01.T01:intron 25.0%
! ATTTAGCGAATCACTTATTT+AGG + Chr4:12996781-12996800 None:intergenic 25.0%
! CAATAATTGTTAAAGGATTG+AGG - Chr4:12996352-12996371 MsG0480018995.01.T01:intron 25.0%
! CAATGACTTATGATCATATA+AGG + Chr4:12995263-12995282 None:intergenic 25.0%
! CAATTGTTTATCAACAACAA+TGG - Chr4:12998154-12998173 MsG0480018995.01.T01:intron 25.0%
! CACAAGATAAAATGAAGAAT+AGG + Chr4:12997319-12997338 None:intergenic 25.0%
! CTATAATTATAAGGTCATGA+TGG + Chr4:12994974-12994993 None:intergenic 25.0%
! CTTATATGATCATAAGTCAT+TGG - Chr4:12995261-12995280 MsG0480018995.01.T01:intron 25.0%
! GACTATTTAAAGGTTTCATT+AGG + Chr4:12993974-12993993 None:intergenic 25.0%
! TAATAGTGGTATCAAAGTTT+GGG + Chr4:12997183-12997202 None:intergenic 25.0%
! TAATCACCACAAAACTAAAA+GGG - Chr4:12997576-12997595 MsG0480018995.01.T01:intron 25.0%
! TAATGAATTCAACTTCAAAC+AGG + Chr4:12995091-12995110 None:intergenic 25.0%
! TAATTGAGTGATTAAGACTA+TGG + Chr4:12996688-12996707 None:intergenic 25.0%
! TATAACGGTGAAAACATATA+TGG + Chr4:12997064-12997083 None:intergenic 25.0%
! TATATTTCCAGTTTCTTACA+CGG - Chr4:12999433-12999452 MsG0480018995.01.T01:intron 25.0%
! TATTTGCAATACTCTTCAAA+TGG - Chr4:12994174-12994193 MsG0480018995.01.T01:intron 25.0%
! TCAATTCAACTATGCTATAT+TGG - Chr4:12993876-12993895 MsG0480018995.01.T01:intron 25.0%
! TGTATCTTATGAATGAATCT+TGG - Chr4:12999302-12999321 MsG0480018995.01.T01:intron 25.0%
! TGTGTTAAAACATATAATGG+CGG + Chr4:12994215-12994234 None:intergenic 25.0%
! TTAATAGTGGTATCAAAGTT+TGG + Chr4:12997184-12997203 None:intergenic 25.0%
! TTATGCATGAGCTAATAATA+TGG + Chr4:12997687-12997706 None:intergenic 25.0%
! TTATTGCTTTCACGAATATA+GGG - Chr4:12998802-12998821 MsG0480018995.01.T01:intron 25.0%
! TTCATATAATGTTTGCATGA+TGG + Chr4:12994398-12994417 None:intergenic 25.0%
! TTTATTGCTTTCACGAATAT+AGG - Chr4:12998801-12998820 MsG0480018995.01.T01:intron 25.0%
!! AACTCTATATGTTACTTACT+AGG - Chr4:12994467-12994486 MsG0480018995.01.T01:intron 25.0%
!! ACTCTATATGTTACTTACTA+GGG - Chr4:12994468-12994487 MsG0480018995.01.T01:intron 25.0%
!! ACTTAACTTAATGAGTGTTT+TGG - Chr4:12999653-12999672 MsG0480018995.01.T01:intron 25.0%
!! ATGTTCTTAGATTTTGTTGA+AGG - Chr4:12993642-12993661 MsG0480018995.01.T01:intron 25.0%
!! CAATTCAGCTGTATAAATTT+TGG - Chr4:12996919-12996938 MsG0480018995.01.T01:intron 25.0%
!! CCAAATATGGATGATTTTAT+GGG + Chr4:12995435-12995454 None:intergenic 25.0%
!! GCGATAATTTTGCATAAAAA+GGG - Chr4:12994085-12994104 MsG0480018995.01.T01:intron 25.0%
!! GTAAATTTATTGACTATTGG+TGG + Chr4:12994372-12994391 None:intergenic 25.0%
!! TAATTCATCGGTATCAATTT+TGG - Chr4:12993217-12993236 MsG0480018995.01.T01:intron 25.0%
!! TACACACATTTATGAGATTT+TGG - Chr4:12998387-12998406 MsG0480018995.01.T01:intron 25.0%
!! TCTCCTTATTTAGTTATTCT+TGG + Chr4:12995458-12995477 None:intergenic 25.0%
!! TGCGATAATTTTGCATAAAA+AGG - Chr4:12994084-12994103 MsG0480018995.01.T01:intron 25.0%
!! TTCGTTTTGTGCATTTTATA+TGG + Chr4:12995374-12995393 None:intergenic 25.0%
!! TTTTCATCCATTTAGGTATT+GGG - Chr4:12996127-12996146 MsG0480018995.01.T01:intron 25.0%
!!! AGGATTCTTTTAACTGATAA+TGG - Chr4:12999849-12999868 MsG0480018995.01.T01:three_prime_UTR 25.0%
!!! ATTTGATTTGTGTTTAGAAG+GGG - Chr4:12992910-12992929 MsG0480018995.01.T01:intron 25.0%
!!! ATTTTTCTTTTGTTTCTGCA+TGG - Chr4:12999399-12999418 MsG0480018995.01.T01:intron 25.0%
!!! CACGGATAAGTTATTTTAAA+GGG + Chr4:12998208-12998227 None:intergenic 25.0%
!!! CGCCCAAATAAATTTTATTT+GGG - Chr4:12995613-12995632 MsG0480018995.01.T01:intron 25.0%
!!! GTCTAAATACTTTTGATTTG+GGG + Chr4:12995500-12995519 None:intergenic 25.0%
!!! TCACGGATAAGTTATTTTAA+AGG + Chr4:12998209-12998228 None:intergenic 25.0%
!!! TGTTTTTTCCATGATTCTTT+TGG - Chr4:12992741-12992760 MsG0480018995.01.T01:intron 25.0%
!!! TTTTCAGTACTTTTTTGGTT+CGG - Chr4:12999350-12999369 MsG0480018995.01.T01:intron 25.0%
!!! TTTTTCTTTTGTTTCTGCAT+GGG - Chr4:12999400-12999419 MsG0480018995.01.T01:intron 25.0%
AAAACCTAAAGGAAATATCG+AGG - Chr4:12996104-12996123 MsG0480018995.01.T01:intron 30.0%
AAAACCTCGATATTTCCTTT+AGG + Chr4:12996111-12996130 None:intergenic 30.0%
AAAGCAACAAAAAGTTAAGG+TGG + Chr4:12992649-12992668 None:intergenic 30.0%
AAATAACACAGAATCAAGCT+TGG + Chr4:12994159-12994178 None:intergenic 30.0%
AATAAGGAGAAATACTTGGT+TGG - Chr4:12995468-12995487 MsG0480018995.01.T01:intron 30.0%
AATCACCACAAAACTAAAAG+GGG - Chr4:12997577-12997596 MsG0480018995.01.T01:intron 30.0%
AATGAAGTGCAACTTATGAA+AGG - Chr4:13000604-13000623 MsG0480018995.01.T01:intron 30.0%
AATTAACCCCAATACCTAAA+TGG + Chr4:12996137-12996156 None:intergenic 30.0%
ACACTAAATGTTTGGTACAA+AGG + Chr4:12996422-12996441 None:intergenic 30.0%
ACATTAGATTGTGACACTAT+AGG - Chr4:12996060-12996079 MsG0480018995.01.T01:intron 30.0%
ACTATCTCTCACACAAATAT+AGG + Chr4:12994831-12994850 None:intergenic 30.0%
ACTTGGAAAATACAATGACA+TGG - Chr4:12997845-12997864 MsG0480018995.01.T01:intron 30.0%
AGAAACAAACATCAATGACT+TGG + Chr4:12997725-12997744 None:intergenic 30.0%
AGAATAATATAAAGTGGCCA+TGG - Chr4:13000705-13000724 MsG0480018995.01.T01:intron 30.0%
AGATTCATTGTTCTTAAGAC+GGG + Chr4:12998184-12998203 None:intergenic 30.0%
AGGATCAGTTACTATTAAGT+AGG - Chr4:12994736-12994755 MsG0480018995.01.T01:intron 30.0%
ATAAGGAGAAATACTTGGTT+GGG - Chr4:12995469-12995488 MsG0480018995.01.T01:intron 30.0%
ATATATGGATTTCGTTTGAG+CGG + Chr4:12997049-12997068 None:intergenic 30.0%
ATATTCCCAAATAAACGCAA+AGG + Chr4:13000241-13000260 None:intergenic 30.0%
ATTAGTTGTAGCATACGTAT+AGG + Chr4:12994784-12994803 None:intergenic 30.0%
CAAGTCTCAACAAACAATAT+TGG - Chr4:12996391-12996410 MsG0480018995.01.T01:intron 30.0%
CAATCGTGTAATTAATCCAA+GGG - Chr4:12998998-12999017 MsG0480018995.01.T01:intron 30.0%
CATTAATGTTGAGACATCTT+TGG - Chr4:12994123-12994142 MsG0480018995.01.T01:intron 30.0%
CATTAGATTGTGACACTATA+GGG - Chr4:12996061-12996080 MsG0480018995.01.T01:intron 30.0%
CCCATAAAATCATCCATATT+TGG - Chr4:12995432-12995451 MsG0480018995.01.T01:intron 30.0%
GAGAAAAAACGGTGTTTATT+CGG + Chr4:12999521-12999540 None:intergenic 30.0%
TAACAATTTCTTCCCGTAAA+TGG + Chr4:12994527-12994546 None:intergenic 30.0%
TACAAAATCCAACCAATGTT+TGG - Chr4:12995165-12995184 MsG0480018995.01.T01:intron 30.0%
TACCACTATTAAATCATGAG+AGG - Chr4:12997192-12997211 MsG0480018995.01.T01:intron 30.0%
TAGTTATTCTTGGCCAAATA+TGG + Chr4:12995448-12995467 None:intergenic 30.0%
TATCAACGGTTAAAAAGAGA+AGG + Chr4:12995058-12995077 None:intergenic 30.0%
TATTCCCAAATAAACGCAAA+GGG + Chr4:13000240-13000259 None:intergenic 30.0%
TCTCTAGCACCTTATAAATT+GGG - Chr4:12999085-12999104 MsG0480018995.01.T01:intron 30.0%
TGACTTATGATCATATAAGG+CGG + Chr4:12995260-12995279 None:intergenic 30.0%
TGGAAAGCAACAAAAAGTTA+AGG + Chr4:12992652-12992671 None:intergenic 30.0%
TGGAGATTACATGATTGAAA+AGG - Chr4:12999802-12999821 MsG0480018995.01.T01:three_prime_UTR 30.0%
TGGCCAAGAATAACTAAATA+AGG - Chr4:12995452-12995471 MsG0480018995.01.T01:intron 30.0%
TGTCAATGCAATTAAGTAAG+AGG - Chr4:12993044-12993063 MsG0480018995.01.T01:intron 30.0%
TGTCTCTTGTGACTATTTAA+AGG + Chr4:12993984-12994003 None:intergenic 30.0%
TTCACAATTCATGTGTATGA+TGG - Chr4:13000391-13000410 MsG0480018995.01.T01:intron 30.0%
TTCTATAACCAAACATTGGT+TGG + Chr4:12995176-12995195 None:intergenic 30.0%
TTCTCTAGCACCTTATAAAT+TGG - Chr4:12999084-12999103 MsG0480018995.01.T01:intron 30.0%
TTCTCTTGTGATACACAATT+AGG - Chr4:12997787-12997806 MsG0480018995.01.T01:intron 30.0%
TTGAGCCATTAAGTCTTTAT+TGG - Chr4:12993947-12993966 MsG0480018995.01.T01:intron 30.0%
TTGGTTCATCAATATCAAGT+TGG - Chr4:12993794-12993813 MsG0480018995.01.T01:intron 30.0%
! AAACATTGGTTGGATTTAAC+TGG + Chr4:12995133-12995152 None:intergenic 30.0%
! AACATTGGTTGGATTTAACT+GGG + Chr4:12995132-12995151 None:intergenic 30.0%
! ACACATTTATGAGATTTTGG+TGG - Chr4:12998390-12998409 MsG0480018995.01.T01:intron 30.0%
! AGTCTTCAAGAGTGTATAAT+TGG - Chr4:12995307-12995326 MsG0480018995.01.T01:intron 30.0%
! GCCAAATATGGATGATTTTA+TGG + Chr4:12995436-12995455 None:intergenic 30.0%
! GCGCCCAAATAAATTTTATT+TGG - Chr4:12995612-12995631 MsG0480018995.01.T01:intron 30.0%
! GTTTTCATCCATTTAGGTAT+TGG - Chr4:12996126-12996145 MsG0480018995.01.T01:intron 30.0%
! TGTTGTAATCTTGTGTTGTT+TGG + Chr4:12999037-12999056 None:intergenic 30.0%
! TTATGCAAGACTTGTTCATT+TGG - Chr4:12995643-12995662 MsG0480018995.01.T01:intron 30.0%
! TTCTAGAGATGTACCATTTA+CGG - Chr4:12994511-12994530 MsG0480018995.01.T01:intron 30.0%
! TTTCATCCATTTAGGTATTG+GGG - Chr4:12996128-12996147 MsG0480018995.01.T01:intron 30.0%
! TTTTCCATGATTCTTTTGGT+TGG - Chr4:12992745-12992764 MsG0480018995.01.T01:intron 30.0%
!! ACTTAAATTTTAAAGGGTGG+TGG + Chr4:12998684-12998703 None:intergenic 30.0%
!! ATATTATTTCTAGACGGCTA+AGG + Chr4:13000067-13000086 None:intergenic 30.0%
!! CAGGAAGTTGATAATATCAA+CGG + Chr4:12995072-12995091 None:intergenic 30.0%
!! GTTGTAATCTTGTGTTGTTT+GGG + Chr4:12999036-12999055 None:intergenic 30.0%
!! TTTCCATGATTCTTTTGGTT+GGG - Chr4:12992746-12992765 MsG0480018995.01.T01:intron 30.0%
!! TTTGATTTGTGTTTAGAAGG+GGG - Chr4:12992911-12992930 MsG0480018995.01.T01:intron 30.0%
!!! ATATTTTGGTGCAATAGTAG+AGG + Chr4:12997126-12997145 None:intergenic 30.0%
!!! CAAGGACCCTATTTTTTTTA+TGG + Chr4:12999778-12999797 None:intergenic 30.0%
!!! TTTTCTTTTGTTTCTGCATG+GGG - Chr4:12999401-12999420 MsG0480018995.01.T01:intron 30.0%
AAAGGAGGTCTAAAAGGATT+GGG - Chr4:12996223-12996242 MsG0480018995.01.T01:intron 35.0%
AACATTCAAAGGAGAGTCAA+AGG - Chr4:12996184-12996203 MsG0480018995.01.T01:intron 35.0%
AACTGAAGATAAATCACCCA+AGG + Chr4:12994563-12994582 None:intergenic 35.0%
AAGAGATCCATAAATAGGAC+AGG - Chr4:12997084-12997103 MsG0480018995.01.T01:intron 35.0%
AAGATCAAAGGAGGTCTAAA+AGG - Chr4:12996217-12996236 MsG0480018995.01.T01:intron 35.0%
AATATGTCTGGCTGTAATTG+TGG - Chr4:12999200-12999219 MsG0480018995.01.T01:intron 35.0%
ACACTTGATTGTTTACGCTA+TGG + Chr4:12996998-12997017 None:intergenic 35.0%
ACTCCAAAAGACTAAAGTCA+AGG + Chr4:12996464-12996483 None:intergenic 35.0%
ACTGAAGATAAATCACCCAA+GGG + Chr4:12994562-12994581 None:intergenic 35.0%
ACTTCATAGGTTAGCAAAAG+AGG - Chr4:12994688-12994707 MsG0480018995.01.T01:intron 35.0%
ACTTCTCAAAGGACATGAAA+TGG + Chr4:12997993-12998012 None:intergenic 35.0%
AGAATAATATGAGGTGGTCA+TGG - Chr4:12993597-12993616 MsG0480018995.01.T01:intron 35.0%
AGGGAGCAATTAAAACCTAA+AGG - Chr4:12996093-12996112 MsG0480018995.01.T01:intron 35.0%
ATAAGATATGCACAACGACT+TGG - Chr4:12993119-12993138 MsG0480018995.01.T01:intron 35.0%
ATCACCACAAAACTAAAAGG+GGG - Chr4:12997578-12997597 MsG0480018995.01.T01:intron 35.0%
CAATATATCTCTGCTTCAAG+AGG + Chr4:12993509-12993528 None:intergenic 35.0%
CATCTTCTTCAAGTCAACAT+CGG - Chr4:12995210-12995229 MsG0480018995.01.T01:intron 35.0%
CATTTGGTTGAAAACTTGTG+TGG - Chr4:12995659-12995678 MsG0480018995.01.T01:intron 35.0%
CTCAATTATATCGGATGTCA+CGG + Chr4:12998226-12998245 None:intergenic 35.0%
CTCCAAAAGACTAAAGTCAA+GGG + Chr4:12996463-12996482 None:intergenic 35.0%
CTCCTCTCATGATTTAATAG+TGG + Chr4:12997197-12997216 None:intergenic 35.0%
CTCTAGCACCTTATAAATTG+GGG - Chr4:12999086-12999105 MsG0480018995.01.T01:intron 35.0%
CTCTCCTTTGAATGTTGTTA+AGG + Chr4:12996180-12996199 None:intergenic 35.0%
CTCTTATTGATACATGTCTC+CGG - Chr4:12999480-12999499 MsG0480018995.01.T01:intron 35.0%
CTCTTGAAGCAGAGATATAT+TGG - Chr4:12993507-12993526 MsG0480018995.01.T01:intron 35.0%
CTTCTCAAAGGACATGAAAT+GGG + Chr4:12997992-12998011 None:intergenic 35.0%
GACACCTTAACAACATTCAA+AGG - Chr4:12996173-12996192 MsG0480018995.01.T01:intron 35.0%
GCAATCGTGTAATTAATCCA+AGG - Chr4:12998997-12999016 MsG0480018995.01.T01:intron 35.0%
GTAACTGATCCTTATCACTA+AGG + Chr4:12994728-12994747 None:intergenic 35.0%
GTGTGTAGGAAAGTTACAAT+GGG + Chr4:12997393-12997412 None:intergenic 35.0%
GTTTAGCATTGCAACATAGT+AGG - Chr4:12997344-12997363 MsG0480018995.01.T01:intron 35.0%
TAAGAAACCGTGTAAGAAAC+TGG + Chr4:12999443-12999462 None:intergenic 35.0%
TACTTGATGAACCTACAACT+TGG - Chr4:12998413-12998432 MsG0480018995.01.T01:intron 35.0%
TAGGGCCAATAAAGACTTAA+TGG + Chr4:12993955-12993974 None:intergenic 35.0%
TATATGGATTTCGTTTGAGC+GGG + Chr4:12997048-12997067 None:intergenic 35.0%
TCAAGTGGAATAGAATGAGA+AGG - Chr4:12994040-12994059 MsG0480018995.01.T01:intron 35.0%
TCTAGAGATGTACCATTTAC+GGG - Chr4:12994512-12994531 MsG0480018995.01.T01:intron 35.0%
TCTCATTCTATTCCACTTGA+TGG + Chr4:12994040-12994059 None:intergenic 35.0%
TCTGAAAATATGTCTAGCTG+TGG - Chr4:12992576-12992595 MsG0480018995.01.T01:three_prime_UTR 35.0%
TGCGTTTATTTGGGAATATG+TGG - Chr4:13000242-13000261 MsG0480018995.01.T01:intron 35.0%
TGGCATATATCGACATAAGT+TGG - Chr4:12993814-12993833 MsG0480018995.01.T01:intron 35.0%
TGTCATGCTCATGAAATTTC+AGG - Chr4:12994938-12994957 MsG0480018995.01.T01:intron 35.0%
TGTTAAAGGATTGAGGTTCT+TGG - Chr4:12996359-12996378 MsG0480018995.01.T01:intron 35.0%
TTCATGAGCATGACAAATCT+GGG + Chr4:12994933-12994952 None:intergenic 35.0%
TTGGGAATATGTGGATCATT+AGG - Chr4:13000251-13000270 MsG0480018995.01.T01:intron 35.0%
TTTCATGAGCATGACAAATC+TGG + Chr4:12994934-12994953 None:intergenic 35.0%
! ACACTATAGGGTTTTGCAAT+AGG - Chr4:12996073-12996092 MsG0480018995.01.T01:intron 35.0%
! AGTTGAGTTGTGAATATGTC+TGG - Chr4:12999188-12999207 MsG0480018995.01.T01:intron 35.0%
! ATCGAGGTTTTCATCCATTT+AGG - Chr4:12996120-12996139 MsG0480018995.01.T01:intron 35.0%
! ATGCTCATGAAATTTCAGGT+TGG - Chr4:12994942-12994961 MsG0480018995.01.T01:intron 35.0%
! ATGGCTCAAAAAGTGCATTT+AGG + Chr4:12993936-12993955 None:intergenic 35.0%
! CACTATAGGGTTTTGCAATA+GGG - Chr4:12996074-12996093 MsG0480018995.01.T01:intron 35.0%
! CTTACATCGATGAGCTTTTT+GGG - Chr4:12999613-12999632 MsG0480018995.01.T01:intron 35.0%
! TAATGGCGGAGAATATATTG+AGG + Chr4:12994201-12994220 None:intergenic 35.0%
! TATGGCTCCAAATTTCTAGA+GGG + Chr4:12996980-12996999 None:intergenic 35.0%
! TCTTACATCGATGAGCTTTT+TGG - Chr4:12999612-12999631 MsG0480018995.01.T01:intron 35.0%
! TTTAGAACATCACCATCAAG+TGG - Chr4:12994025-12994044 MsG0480018995.01.T01:intron 35.0%
!! AACTCTTTACCATTGACTTG+AGG + Chr4:12993153-12993172 None:intergenic 35.0%
!! AAGTTCACACTTTTCTAGAG+TGG - Chr4:12994316-12994335 MsG0480018995.01.T01:intron 35.0%
!! ATCCCTTGACTTTAGTCTTT+TGG - Chr4:12996458-12996477 MsG0480018995.01.T01:intron 35.0%
!! CAATTTGAAGGTGCTGAAAT+GGG - Chr4:12993392-12993411 MsG0480018995.01.T01:intron 35.0%
!! GCTATTTCTTGTAGAGTCTA+GGG - Chr4:13000187-13000206 MsG0480018995.01.T01:intron 35.0%
!! TACAAGAAGTGCTACTTCAT+AGG - Chr4:12994675-12994694 MsG0480018995.01.T01:intron 35.0%
!! TTGACTTTAGTCTTTTGGAG+TGG - Chr4:12996463-12996482 MsG0480018995.01.T01:intron 35.0%
!! TTTTCTGAAGATGAGATCCA+TGG + Chr4:13000725-13000744 None:intergenic 35.0%
AAAATGCACAAAACGAACCC+AGG - Chr4:12995377-12995396 MsG0480018995.01.T01:intron 40.0%
AAATGCACAAAACGAACCCA+GGG - Chr4:12995378-12995397 MsG0480018995.01.T01:intron 40.0%
AACTTTCCTACACACGATGT+GGG - Chr4:12997398-12997417 MsG0480018995.01.T01:intron 40.0%
AATATGTCTAGCTGTGGTTG+TGG - Chr4:12992582-12992601 MsG0480018995.01.T01:three_prime_UTR 40.0%
AATCACGGTTTCTGTGGTTT+CGG + Chr4:12993348-12993367 None:intergenic 40.0%
ACAAGATTACAACACGTGGA+TGG - Chr4:12999043-12999062 MsG0480018995.01.T01:intron 40.0%
AGCACCTTCAAATTGGATCT+TGG + Chr4:12993387-12993406 None:intergenic 40.0%
AGCTATGATCGCTTTGTGTT+TGG - Chr4:12993674-12993693 MsG0480018995.01.T01:intron 40.0%
ATACTACTGTCGGATCATGA+AGG - Chr4:12995406-12995425 MsG0480018995.01.T01:intron 40.0%
ATTAGCTAGAGCCAAGTTGT+AGG + Chr4:12998427-12998446 None:intergenic 40.0%
ATTGCGTGCTCAAACTTTCT+GGG - Chr4:12997548-12997567 MsG0480018995.01.T01:intron 40.0%
CAAAGGAGGTCTAAAAGGAT+TGG - Chr4:12996222-12996241 MsG0480018995.01.T01:intron 40.0%
CAACACAAGATTACAACACG+TGG - Chr4:12999039-12999058 MsG0480018995.01.T01:intron 40.0%
CACTCTTCTTTGAATGTCCA+TGG + Chr4:12997615-12997634 None:intergenic 40.0%
CACTTCATTTGCAGTTGCAA+GGG + Chr4:12993469-12993488 None:intergenic 40.0%
CAGAATCAAGCTTGGAAAGT+CGG + Chr4:12994151-12994170 None:intergenic 40.0%
CCATTTCAGCACCTTCAAAT+TGG + Chr4:12993394-12993413 None:intergenic 40.0%
CGTGTAATTAATCCAAGGGT+AGG - Chr4:12999002-12999021 MsG0480018995.01.T01:intron 40.0%
CGTGTGTAGGAAAGTTACAA+TGG + Chr4:12997394-12997413 None:intergenic 40.0%
GAACCCAACCAAAAGAATCA+TGG + Chr4:12992752-12992771 None:intergenic 40.0%
GATGTAACAACGAGGACAAA+AGG + Chr4:13000117-13000136 None:intergenic 40.0%
GGAGTTACCATTGGGTTTAA+CGG - Chr4:12995231-12995250 MsG0480018995.01.T01:intron 40.0%
GTACGTGACCCCAATTTATA+AGG + Chr4:12999097-12999116 None:intergenic 40.0%
TAACTTTCCTACACACGATG+TGG - Chr4:12997397-12997416 MsG0480018995.01.T01:intron 40.0%
TACTACTGTCGGATCATGAA+GGG - Chr4:12995407-12995426 MsG0480018995.01.T01:intron 40.0%
TCAAAGGAGAGTCAAAGGTT+GGG - Chr4:12996189-12996208 MsG0480018995.01.T01:intron 40.0%
TCAACATCGGAGTTACCATT+GGG - Chr4:12995223-12995242 MsG0480018995.01.T01:intron 40.0%
TCCTCCCTTTGCGTTTATTT+GGG - Chr4:13000233-13000252 MsG0480018995.01.T01:intron 40.0%
TCCTCGTTGTTACATCCAAA+AGG - Chr4:13000121-13000140 MsG0480018995.01.T01:intron 40.0%
TCGGTTCAGATTGATAAGTC+CGG + Chr4:12999502-12999521 None:intergenic 40.0%
TGAGTTAACTCGTTGCCAAA+TGG + Chr4:12993841-12993860 None:intergenic 40.0%
TGTGGAAGTAGTTGCAATTG+TGG - Chr4:12999218-12999237 MsG0480018995.01.T01:intron 40.0%
TGTGGTGATAACTGCAAGTA+AGG - Chr4:12999236-12999255 MsG0480018995.01.T01:intron 40.0%
TTACTTCGTCTCTTTCCCTT+GGG - Chr4:12994544-12994563 MsG0480018995.01.T01:intron 40.0%
TTCAAAGGAGAGTCAAAGGT+TGG - Chr4:12996188-12996207 MsG0480018995.01.T01:intron 40.0%
! AACCACAGAAACCGTGATTT+TGG - Chr4:12993349-12993368 MsG0480018995.01.T01:intron 40.0%
! ACCACAGAAACCGTGATTTT+GGG - Chr4:12993350-12993369 MsG0480018995.01.T01:intron 40.0%
! ACCTTTTGGATGTAACAACG+AGG + Chr4:13000125-13000144 None:intergenic 40.0%
! AGCTATGGTTGCTTTGTGTT+TGG - Chr4:13000782-13000801 MsG0480018995.01.T01:CDS 40.0%
! ATGGCTCCAAATTTCTAGAG+GGG + Chr4:12996979-12996998 None:intergenic 40.0%
! CGGGAGCATATCTATACAAA+TGG + Chr4:12997029-12997048 None:intergenic 40.0%
! CTATGGCTCCAAATTTCTAG+AGG + Chr4:12996981-12997000 None:intergenic 40.0%
! TAGCTTCATCGTCAACCTTT+TGG + Chr4:13000139-13000158 None:intergenic 40.0%
! TCAAGGATGGTTGACTTCTA+AGG - Chr4:12996303-12996322 MsG0480018995.01.T01:intron 40.0%
! TCCAAATTTCTAGAGGGGAT+GGG + Chr4:12996974-12996993 None:intergenic 40.0%
! TTTCATCGCACGTCTTATTG+TGG + Chr4:12998972-12998991 None:intergenic 40.0%
!! CCAATTTGAAGGTGCTGAAA+TGG - Chr4:12993391-12993410 MsG0480018995.01.T01:intron 40.0%
!! GGCTATTTCTTGTAGAGTCT+AGG - Chr4:13000186-13000205 MsG0480018995.01.T01:intron 40.0%
!! TCGACATAAGTTGGTCCATT+TGG - Chr4:12993823-12993842 MsG0480018995.01.T01:intron 40.0%
!! TCGTATTGGTTGATCAAGGA+TGG - Chr4:12996290-12996309 MsG0480018995.01.T01:intron 40.0%
!! TGAAGGTGTTATGAGAGCTA+TGG - Chr4:12993659-12993678 MsG0480018995.01.T01:intron 40.0%
!! TTTGGAGTGGATTAGACCAT+TGG - Chr4:12996476-12996495 MsG0480018995.01.T01:intron 40.0%
!! TTTTGGTGCAATAGTAGAGG+TGG + Chr4:12997123-12997142 None:intergenic 40.0%
!!! TTCTCCCCCTTTTAGTTTTG+TGG + Chr4:12997585-12997604 None:intergenic 40.0%
AAAAATAGGGTCCTTGCGTG+TGG - Chr4:12999782-12999801 MsG0480018995.01.T01:three_prime_UTR 45.0%
AACCACAGAAACCGTGATTC+TGG - Chr4:13000473-13000492 MsG0480018995.01.T01:intron 45.0%
AAGTTTGAGCACGCAATGCA+AGG + Chr4:12997545-12997564 None:intergenic 45.0%
ACCACAGAAACCGTGATTCT+GGG - Chr4:13000474-13000493 MsG0480018995.01.T01:intron 45.0%
AGGGGGAGAATAATCTTCCA+TGG - Chr4:12997595-12997614 MsG0480018995.01.T01:intron 45.0%
CAAATAAACGCAAAGGGAGG+AGG + Chr4:13000234-13000253 None:intergenic 45.0%
CAACCGGATGCGAGAAAAAA+CGG + Chr4:12999532-12999551 None:intergenic 45.0%
CAACGAGTTAACTCATGCTC+TGG - Chr4:12993846-12993865 MsG0480018995.01.T01:intron 45.0%
CATGATCCGACAGTAGTATG+AGG + Chr4:12995405-12995424 None:intergenic 45.0%
CATTGCGTGCTCAAACTTTC+TGG - Chr4:12997547-12997566 MsG0480018995.01.T01:intron 45.0%
CCCTCAAAATGGATCTTTGC+CGG + Chr4:13000507-13000526 None:intergenic 45.0%
CTCCTCCCTTTGCGTTTATT+TGG - Chr4:13000232-13000251 MsG0480018995.01.T01:intron 45.0%
CTGGCCAAGATCCAATTTGA+AGG - Chr4:12993380-12993399 MsG0480018995.01.T01:intron 45.0%
GAAGCGGAAGAAGGAACTTT+AGG + Chr4:12997284-12997303 None:intergenic 45.0%
GATGAGGCTCCTTAGTGATA+AGG - Chr4:12994716-12994735 MsG0480018995.01.T01:intron 45.0%
GATTAGACCATTGGCAAGGA+CGG - Chr4:12996485-12996504 MsG0480018995.01.T01:intron 45.0%
GCACTTCATTTGCAGTTGCA+AGG + Chr4:12993470-12993489 None:intergenic 45.0%
GTCAACATCGGAGTTACCAT+TGG - Chr4:12995222-12995241 MsG0480018995.01.T01:intron 45.0%
GTTACTTCGTCTCTTTCCCT+TGG - Chr4:12994543-12994562 MsG0480018995.01.T01:intron 45.0%
TACTTTGCAGATGCAGCAAG+AGG - Chr4:12993297-12993316 MsG0480018995.01.T01:intron 45.0%
TATCACTAAGGAGCCTCATC+AGG + Chr4:12994716-12994735 None:intergenic 45.0%
TCATGTAATCTCCACACGCA+AGG + Chr4:12999796-12999815 None:intergenic 45.0%
TCCCAAATAAACGCAAAGGG+AGG + Chr4:13000237-13000256 None:intergenic 45.0%
TGTGGTGATAGCTGCAAGTA+AGG - Chr4:12992618-12992637 MsG0480018995.01.T01:intron 45.0%
TTAATCCAAGGGTAGGCTTG+TGG - Chr4:12999009-12999028 MsG0480018995.01.T01:intron 45.0%
TTCCTTCTTCCGCTTCACTT+CGG - Chr4:12997288-12997307 MsG0480018995.01.T01:intron 45.0%
TTCTCCAAGATTCCCACAAC+CGG + Chr4:12999548-12999567 None:intergenic 45.0%
TTGCGTGCTCAAACTTTCTG+GGG - Chr4:12997549-12997568 MsG0480018995.01.T01:intron 45.0%
! ACCGGCAAAGATCCATTTTG+AGG - Chr4:13000503-13000522 MsG0480018995.01.T01:intron 45.0%
! AGATATGCACAACGACTTGG+TGG - Chr4:12993122-12993141 MsG0480018995.01.T01:intron 45.0%
! CAAATTTCTAGAGGGGATGG+GGG + Chr4:12996972-12996991 None:intergenic 45.0%
! CCAAATTTCTAGAGGGGATG+GGG + Chr4:12996973-12996992 None:intergenic 45.0%
! CCGGCAAAGATCCATTTTGA+GGG - Chr4:13000504-13000523 MsG0480018995.01.T01:intron 45.0%
! CGGCAAAGATCCATTTTGAG+GGG - Chr4:13000505-13000524 MsG0480018995.01.T01:intron 45.0%
! CGTCTTATTGTGGTGTGCAA+TGG + Chr4:12998962-12998981 None:intergenic 45.0%
! CTCCAAATTTCTAGAGGGGA+TGG + Chr4:12996975-12996994 None:intergenic 45.0%
! TTTTTCTCGCATCCGGTTGT+GGG - Chr4:12999533-12999552 MsG0480018995.01.T01:intron 45.0%
!! AGTGGATTAGACCATTGGCA+AGG - Chr4:12996481-12996500 MsG0480018995.01.T01:intron 45.0%
!! CATTTTGAGGGGGCTGAAAT+GGG - Chr4:13000516-13000535 MsG0480018995.01.T01:intron 45.0%
!! CTCGTCGTATTGGTTGATCA+AGG - Chr4:12996286-12996305 MsG0480018995.01.T01:intron 45.0%
!! GATAGACTGACTCGTCGTAT+TGG - Chr4:12996276-12996295 MsG0480018995.01.T01:intron 45.0%
!! GATATGCACAACGACTTGGT+GGG - Chr4:12993123-12993142 MsG0480018995.01.T01:intron 45.0%
!! GGATGGTTGACTTCTAAGGT+TGG - Chr4:12996307-12996326 MsG0480018995.01.T01:intron 45.0%
!! GGCAAAGATCCATTTTGAGG+GGG - Chr4:13000506-13000525 MsG0480018995.01.T01:intron 45.0%
!! GGTTGACTTCTAAGGTTGGA+GGG - Chr4:12996311-12996330 MsG0480018995.01.T01:intron 45.0%
!! TGGTTGACTTCTAAGGTTGG+AGG - Chr4:12996310-12996329 MsG0480018995.01.T01:intron 45.0%
!!! ACACCGTTTTTTCTCGCATC+CGG - Chr4:12999526-12999545 MsG0480018995.01.T01:intron 45.0%
!!! TTTTTTCTCGCATCCGGTTG+TGG - Chr4:12999532-12999551 MsG0480018995.01.T01:intron 45.0%
!! TAATATATTCTATTTATAAT+AGG + Chr4:12993750-12993769 None:intergenic 5.0%
AGATGCAACAGCAGGTCTAG+TGG - Chr4:13000429-13000448 MsG0480018995.01.T01:intron 50.0%
AGATGCAGCAAGAGGTCTAG+TGG - Chr4:12993305-12993324 MsG0480018995.01.T01:intron 50.0%
AGCAAAAGAGGCTCCTGATG+AGG - Chr4:12994700-12994719 MsG0480018995.01.T01:intron 50.0%
CAATAGTAGAGGTGGTCACG+TGG + Chr4:12997115-12997134 None:intergenic 50.0%
CAGGGACCTCATACTACTGT+CGG - Chr4:12995396-12995415 MsG0480018995.01.T01:intron 50.0%
CCATTTCAGCCCCCTCAAAA+TGG + Chr4:13000518-13000537 None:intergenic 50.0%
GACAGTAGTATGAGGTCCCT+GGG + Chr4:12995397-12995416 None:intergenic 50.0%
GATGCAACAGCAGGTCTAGT+GGG - Chr4:13000430-13000449 MsG0480018995.01.T01:intron 50.0%
GCCCAAAATCACGGTTTCTG+TGG + Chr4:12993354-12993373 None:intergenic 50.0%
GGCGTGTCCTGTCCTATTTA+TGG + Chr4:12997094-12997113 None:intergenic 50.0%
GGTTGGGTGCTCAAGATCAA+AGG - Chr4:12996205-12996224 MsG0480018995.01.T01:intron 50.0%
GTGGGTACTCCTCAAGTCAA+TGG - Chr4:12993141-12993160 MsG0480018995.01.T01:intron 50.0%
TAGGGTATGCCGAAGTGAAG+CGG + Chr4:12997300-12997319 None:intergenic 50.0%
TCCCAGAATCACGGTTTCTG+TGG + Chr4:13000478-13000497 None:intergenic 50.0%
TCCTACACACGATGTGGGTT+TGG - Chr4:12997403-12997422 MsG0480018995.01.T01:intron 50.0%
TGGGTGCTCAAGATCAAAGG+AGG - Chr4:12996208-12996227 MsG0480018995.01.T01:intron 50.0%
TGTGGAAGCAGTTGCAACTG+TGG - Chr4:12992600-12992619 MsG0480018995.01.T01:three_prime_UTR 50.0%
! CCCCATCCCCTCTAGAAATT+TGG - Chr4:12996970-12996989 MsG0480018995.01.T01:intron 50.0%
! GAAACCGTGATTCTGGGAGT+TGG - Chr4:13000480-13000499 MsG0480018995.01.T01:intron 50.0%
! GAAACCGTGATTTTGGGCGT+CGG - Chr4:12993356-12993375 MsG0480018995.01.T01:intron 50.0%
! TGAAATGGGTGTTGCAGCTG+AGG - Chr4:12993406-12993425 MsG0480018995.01.T01:intron 50.0%
!! AACAGCAGGTCTAGTGGGTT+GGG - Chr4:13000435-13000454 MsG0480018995.01.T01:intron 50.0%
!! CCATTTTGAGGGGGCTGAAA+TGG - Chr4:13000515-13000534 MsG0480018995.01.T01:intron 50.0%
!! TAGTGGATTGAGCTATGCCG+AGG - Chr4:12993322-12993341 MsG0480018995.01.T01:intron 50.0%
AACGCAAAGGGAGGAGGATG+TGG + Chr4:13000228-13000247 None:intergenic 55.0%
ACCATTGGCAAGGACGGTGT+TGG - Chr4:12996491-12996510 MsG0480018995.01.T01:intron 55.0%
CAGACCGACGCCCAAAATCA+CGG + Chr4:12993363-12993382 None:intergenic 55.0%
CGACAGTAGTATGAGGTCCC+TGG + Chr4:12995398-12995417 None:intergenic 55.0%
CGGTCCAACTCCCAGAATCA+CGG + Chr4:13000487-13000506 None:intergenic 55.0%
GACCTGCTGTTGCATCTGCA+AGG + Chr4:13000426-13000445 None:intergenic 55.0%
GCATCCGGTTGTGGGAATCT+TGG - Chr4:12999541-12999560 MsG0480018995.01.T01:intron 55.0%
GCCAAACCCACATCGTGTGT+AGG + Chr4:12997407-12997426 None:intergenic 55.0%
GCGGCAACCGTTAAACCCAA+TGG + Chr4:12995241-12995260 None:intergenic 55.0%
GGTTTCTGTGGTTTCGGCCT+CGG + Chr4:12993342-12993361 None:intergenic 55.0%
TCCAACACCGTCCTTGCCAA+TGG + Chr4:12996495-12996514 None:intergenic 55.0%
TGCCGAAGTGAAGCGGAAGA+AGG + Chr4:12997293-12997312 None:intergenic 55.0%
TGCCTTGCAGATGCAACAGC+AGG - Chr4:13000421-13000440 MsG0480018995.01.T01:intron 55.0%
! ATGGGTGTTGCAGCTGAGGA+TGG - Chr4:12993410-12993429 MsG0480018995.01.T01:intron 55.0%
! CAACAGCAGGTCTAGTGGGT+TGG - Chr4:13000434-13000453 MsG0480018995.01.T01:intron 55.0%
! CGTGATTCTGGGAGTTGGAC+CGG - Chr4:13000485-13000504 MsG0480018995.01.T01:intron 55.0%
!! AGTGGGTTGGGCTATCTCGA+AGG - Chr4:13000447-13000466 MsG0480018995.01.T01:intron 55.0%
GGAGGAGGATGTGGTGACTC+TGG + Chr4:13000219-13000238 None:intergenic 60.0%
TGGGTCCACAAGCCTACCCT+TGG + Chr4:12999017-12999036 None:intergenic 60.0%
! GAGGATGGTGGCTGCAAGTG+TGG - Chr4:12993425-12993444 MsG0480018995.01.T01:intron 60.0%
! GGTGTTGCAGCTGAGGATGG+TGG - Chr4:12993413-12993432 MsG0480018995.01.T01:intron 60.0%
!!! CGTGATTTTGGGCGTCGGTC+TGG - Chr4:12993361-12993380 MsG0480018995.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 12992503 13000894 12992503 ID=MsG0480018995.01;Name=MsG0480018995.01
Chr4 mRNA 12992503 13000894 12992503 ID=MsG0480018995.01.T01;Parent=MsG0480018995.01;Name=MsG0480018995.01.T01;_AED=0.49;_eAED=0.49;_QI=82|1|1|1|0|0|3|302|75
Chr4 exon 12992503 12992625 12992503 ID=MsG0480018995.01.T01:exon:3495;Parent=MsG0480018995.01.T01
Chr4 exon 12999734 13000090 12999734 ID=MsG0480018995.01.T01:exon:3494;Parent=MsG0480018995.01.T01
Chr4 five_prime_UTR 13000813 13000894 13000813 ID=MsG0480018995.01.T01:five_prime_utr;Parent=MsG0480018995.01.T01
Chr4 CDS 13000763 13000812 13000763 ID=MsG0480018995.01.T01:cds;Parent=MsG0480018995.01.T01
Chr4 CDS 12999913 13000090 12999913 ID=MsG0480018995.01.T01:cds;Parent=MsG0480018995.01.T01
Chr4 three_prime_UTR 12999734 12999912 12999734 ID=MsG0480018995.01.T01:three_prime_utr;Parent=MsG0480018995.01.T01
Chr4 three_prime_UTR 12992503 12992625 12992503 ID=MsG0480018995.01.T01:three_prime_utr;Parent=MsG0480018995.01.T01
Chr4 mRNA 12999597 13000894 12999597 ID=MsG0480018995.01.T02;Parent=MsG0480018995.01;Name=MsG0480018995.01.T02;_AED=0.49;_eAED=0.49;_QI=82|1|1|1|0|0|2|316|75
Chr4 exon 12999597 13000090 12999597 ID=MsG0480018995.01.T02:exon:3496;Parent=MsG0480018995.01.T02
Chr4 five_prime_UTR 13000813 13000894 13000813 ID=MsG0480018995.01.T02:five_prime_utr;Parent=MsG0480018995.01.T02
Chr4 CDS 13000763 13000812 13000763 ID=MsG0480018995.01.T02:cds;Parent=MsG0480018995.01.T02
Chr4 CDS 12999913 13000090 12999913 ID=MsG0480018995.01.T02:cds;Parent=MsG0480018995.01.T02
Chr4 three_prime_UTR 12999597 12999912 12999597 ID=MsG0480018995.01.T02:three_prime_utr;Parent=MsG0480018995.01.T02
Gene Sequence

>MsG0480018995.01.T02

ATGTCTAGCTGTGGTTGTGGAAGCAGTTGCAACTGTGGTGATAGCTGCAAATGCAGCAAGAGGTCTAGTGGATTGAGCTATGCCGAGGCCGAAACCACAGAAACCGTGATTTTGGGCGTCGGTCTGGCCAAGATCCAATTTGAAGGTGCTGAAATGGGTGTTGCAGCTGAGGATGGTGGCTGCAAGTGTGGAGATAACTGCACATGTGACCCTTGCAACTGCAAATGA

>MsG0480018995.01.T01

ATGTCTAGCTGTGGTTGTGGAAGCAGTTGCAACTGTGGTGATAGCTGCAAATGCAGCAAGAGGTCTAGTGGATTGAGCTATGCCGAGGCCGAAACCACAGAAACCGTGATTTTGGGCGTCGGTCTGGCCAAGATCCAATTTGAAGGTGCTGAAATGGGTGTTGCAGCTGAGGATGGTGGCTGCAAGTGTGGAGATAACTGCACATGTGACCCTTGCAACTGCAAATGA

Protein sequence

>MsG0480018995.01.T02

MSSCGCGSSCNCGDSCKCSKRSSGLSYAEAETTETVILGVGLAKIQFEGAEMGVAAEDGGCKCGDNCTCDPCNCK*

>MsG0480018995.01.T01

MSSCGCGSSCNCGDSCKCSKRSSGLSYAEAETTETVILGVGLAKIQFEGAEMGVAAEDGGCKCGDNCTCDPCNCK*