AlfalfaGEDB | MsG0180001149.01

M. sativa cultivar ZhongmuNo.1 / MsG0180001149.01

KEGG: K17991
GO: -
PFAM: PF05042

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001149.01.T01	XP_013466557.1	81.152	191	4	1	1	191	1	159	8.92E-103	310

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001149.01.T01	Q9CAB8	59.615	156	60	1	56	211	9	161	7.56E-57	185

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048748.01	MsG0180001149.01	0.803140	4.017788e-49	2.003613e-46
MsG0080048849.01	MsG0180001149.01	0.800055	1.724875e-48	7.953693e-46
MsG0080048938.01	MsG0180001149.01	0.801471	8.865645e-49	4.237407e-46
MsG0080048982.01	MsG0180001149.01	0.838843	2.259684e-57	3.064197e-54
MsG0080049147.01	MsG0180001149.01	0.820680	6.036707e-53	4.808347e-50
MsG0180000086.01	MsG0180001149.01	0.807472	4.970147e-50	2.770863e-47
MsG0180000114.01	MsG0180001149.01	0.803374	3.594773e-49	1.803398e-46
MsG0180000271.01	MsG0180001149.01	0.808921	2.441890e-50	1.413980e-47
MsG0180000291.01	MsG0180001149.01	0.830728	2.493917e-55	2.650112e-52
MsG0180001149.01	MsG0180001663.01	0.818514	1.884282e-52	1.413431e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001149.01.T01	MTR_1g032160	81.152	191	4	1	1	191	1	159	1.08e-106	310
MsG0180001149.01.T01	MTR_1g032190	64.384	146	49	1	57	199	13	158	1.71e-62	197
MsG0180001149.01.T01	MTR_1g032190	64.384	146	49	1	57	199	45	190	3.00e-62	197
MsG0180001149.01.T01	MTR_1g073640	49.286	140	71	0	62	201	59	198	1.01e-39	139
MsG0180001149.01.T01	MTR_7g115490	45.324	139	76	0	62	200	61	199	6.99e-37	132

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0180001149.01.T01	AT1G70680	59.615	156	60	1	56	211	9	161	7.70e-58	185
MsG0180001149.01.T01	AT1G70670	63.433	134	49	0	58	191	10	143	3.73e-56	181
MsG0180001149.01.T01	AT1G23240	54.054	148	64	1	46	193	22	165	2.46e-51	167
MsG0180001149.01.T01	AT1G23240	54.795	146	62	1	46	191	22	163	1.43e-50	167
MsG0180001149.01.T01	AT1G23240	59.055	127	52	0	65	191	2	128	1.05e-49	164
MsG0180001149.01.T01	AT1G23240	59.055	127	52	0	65	191	28	154	2.12e-49	164
MsG0180001149.01.T01	AT1G70680	57.937	126	50	1	86	211	5	127	4.30e-41	140
MsG0180001149.01.T01	AT4G26740	44.138	145	77	1	61	201	57	201	1.18e-36	132
MsG0180001149.01.T01	AT5G55240	37.634	186	105	3	54	228	49	234	3.51e-35	128
MsG0180001149.01.T01	AT2G33380	43.333	120	68	0	65	184	60	179	3.14e-31	117

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Find 64 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCGACTTTCTAGTTAAGA+AGG	0.477869	1:-16583188	MsG0180001149.01.T01:CDS
AACCTTCCTTTGACATCTTT+AGG	0.422579	1:+16584746	None:intergenic
AATATCCAACGGGGCAAACA+TGG	0.456851	1:-16585032	MsG0180001149.01.T01:CDS
AATGCGTGAAATTGGGAGTG+GGG	0.694422	1:-16587015	MsG0180001149.01.T01:CDS
ACAACAGCAATGCGTGAAAT+TGG	0.210121	1:-16587023	MsG0180001149.01.T01:intron
ACACCGGGACGCCTAGTCCG+AGG	0.657921	1:+16584545	None:intergenic
ACACGACATATGTTCGACAC+CGG	0.649171	1:+16584529	None:intergenic
ACAGCCGGTTGAATACGATG+GGG	0.776336	1:+16583599	None:intergenic
ACCCTTCTTAACTAGAAAGT+CGG	0.559365	1:+16583186	None:intergenic
ACCGACTTTCTAGTTAAGAA+GGG	0.598221	1:-16583187	MsG0180001149.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAGAGTTGTGATAAATTAG+AGG	-	Chr1:16585096-16585115	MsG0180001149.01.T01:intron	30.0%
ATCATGATAACTTACGCATT+TGG	-	Chr1:16586958-16586977	MsG0180001149.01.T01:CDS	30.0%
ATCATGGTTTGAAAATGTGT+TGG	-	Chr1:16587364-16587383	MsG0180001149.01.T01:CDS	30.0%
ATGCGTAAGTTATCATGATT+AGG	+	Chr1:16586957-16586976	None:intergenic	30.0%
CCAACAAAAAGTTACTATGT+TGG	-	Chr1:16584567-16584586	MsG0180001149.01.T01:intron	30.0%
CTTGTTTGAATTGCTGAAAA+AGG	-	Chr1:16586531-16586550	MsG0180001149.01.T01:intron	30.0%
GTAAGTTATCATGATTAGGA+GGG	+	Chr1:16586953-16586972	None:intergenic	30.0%
GTGTTCTTCGAATCTAATTT+GGG	-	Chr1:16587238-16587257	MsG0180001149.01.T01:intron	30.0%
TAAGTTATCATGATTAGGAG+GGG	+	Chr1:16586952-16586971	None:intergenic	30.0%
TCATGGTTTGAAAATGTGTT+GGG	-	Chr1:16587365-16587384	MsG0180001149.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	16583165	16587610	16583165	ID=MsG0180001149.01;Name=MsG0180001149.01
Chr1	mRNA	16583165	16587610	16583165	ID=MsG0180001149.01.T01;Parent=MsG0180001149.01;Name=MsG0180001149.01.T01;_AED=0.47;_eAED=0.51;_QI=0\|0.5\|0.42\|1\|1\|1\|7\|0\|313
Chr1	exon	16587343	16587610	16587343	ID=MsG0180001149.01.T01:exon:31457;Parent=MsG0180001149.01.T01
Chr1	exon	16586953	16587038	16586953	ID=MsG0180001149.01.T01:exon:31456;Parent=MsG0180001149.01.T01
Chr1	exon	16584999	16585093	16584999	ID=MsG0180001149.01.T01:exon:31455;Parent=MsG0180001149.01.T01
Chr1	exon	16584749	16584874	16584749	ID=MsG0180001149.01.T01:exon:31454;Parent=MsG0180001149.01.T01
Chr1	exon	16584531	16584585	16584531	ID=MsG0180001149.01.T01:exon:31453;Parent=MsG0180001149.01.T01
Chr1	exon	16583467	16583684	16583467	ID=MsG0180001149.01.T01:exon:31452;Parent=MsG0180001149.01.T01
Chr1	exon	16583165	16583258	16583165	ID=MsG0180001149.01.T01:exon:31451;Parent=MsG0180001149.01.T01
Chr1	CDS	16587343	16587610	16587343	ID=MsG0180001149.01.T01:cds;Parent=MsG0180001149.01.T01
Chr1	CDS	16586953	16587038	16586953	ID=MsG0180001149.01.T01:cds;Parent=MsG0180001149.01.T01
Chr1	CDS	16584999	16585093	16584999	ID=MsG0180001149.01.T01:cds;Parent=MsG0180001149.01.T01
Chr1	CDS	16584749	16584874	16584749	ID=MsG0180001149.01.T01:cds;Parent=MsG0180001149.01.T01
Chr1	CDS	16584531	16584585	16584531	ID=MsG0180001149.01.T01:cds;Parent=MsG0180001149.01.T01
Chr1	CDS	16583467	16583684	16583467	ID=MsG0180001149.01.T01:cds;Parent=MsG0180001149.01.T01
Chr1	CDS	16583165	16583258	16583165	ID=MsG0180001149.01.T01:cds;Parent=MsG0180001149.01.T01

Gene Sequence

>MsG0180001149.01.T01

ATGGCATCTTCTTCTCCTGTATCATATGATAACAAGAAACTAGAGGAAGGTATTATGTTACAAAATTTGTCTTCTTTTTTTAAAAAAATTGTTTCGTTGATTCTTTTATATATTGATGTTTGTTTAAATTTCAATTCATATGTAGGATTTGTTGATGGTATTGAGGAGAAGAAACCCATTCCAAATCATGAAAATGTTCTTCAGAAACATGCTGCTTTCTTTGACTTGAATCATGATGGTGTTATTTATCCATGGGAGACTTTCCAAGCAATGCGTGAAATTGGGAGTGGGGTGTTGTTATCAACTGCAGCTGCTATTTTCATCAATGTTGCCCTCAGTCAGACAACTCGCCCTGGAAAGTTCCCATCTCCACTTTTTCCAATTGAAGTTAAGAATATCCAACGGGGCAAACATGGGAGTGACACTGGAGCATATGATTCTGAAGGAAGGTTTGTTGCATCTAAATTTGAGGAAATCTTCATCAAACATGCACATACACATCCAAATGCTTTAACATATGATGAGCTAAATGAGTTGATAAAGACAAACAGAGAGCCTAAAGATGTCAAAGGAAGCTATAAAGCACGGACAGTCCTCGGACTAGGCGTCCCGGTGTCGAACATATGTCGTGAAATTGGTGCTCAAGTGTTCTCCATTTTGCATTATGTTCTTAAAGCATTTGCTTATCCTAATCCCCATCGTATTCAACCGGCTGTGCGAGTCATCACTTGGATTCGACTTAACTTTGGCTCAGTGGCTCTTAATGTAGATGGCAGCGTGTTCTTCGAATCTAATTTGGGTGGTTTTGGTGGTCTTATCTGTGATAGTACAAGGCCTTTTTTGCATGGAAATTGGGTGGTTAATTTGCAACACACTTTGCGTGAGGGTAATGTTGCAACCGACTTTCTAGTTAAGAAGGGTGCTCTAAGTGACAATGATTAA

Protein sequence

>MsG0180001149.01.T01

MASSSPVSYDNKKLEEGIMLQNLSSFFKKIVSLILLYIDVCLNFNSYVGFVDGIEEKKPIPNHENVLQKHAAFFDLNHDGVIYPWETFQAMREIGSGVLLSTAAAIFINVALSQTTRPGKFPSPLFPIEVKNIQRGKHGSDTGAYDSEGRFVASKFEEIFIKHAHTHPNALTYDELNELIKTNREPKDVKGSYKARTVLGLGVPVSNICREIGAQVFSILHYVLKAFAYPNPHRIQPAVRVITWIRLNFGSVALNVDGSVFFESNLGGFGGLICDSTRPFLHGNWVVNLQHTLREGNVATDFLVKKGALSDND*