AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017793.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017793.01.T02 MTR_3g112160 91.692 325 5 1 1 325 1 303 0.0 609
MsG0380017793.01.T02 MTR_3g112160 90.157 254 3 1 1 254 1 232 8.74e-167 466
MsG0380017793.01.T02 MTR_1g022485 64.458 332 84 3 3 325 34 340 1.34e-151 432
MsG0380017793.01.T02 MTR_5g023110 37.500 136 79 3 191 325 180 310 1.69e-22 97.1
MsG0380017793.01.T01 MTR_3g112160 91.692 325 5 1 1 325 1 303 0.0 609
MsG0380017793.01.T01 MTR_3g112160 90.157 254 3 1 1 254 1 232 8.74e-167 466
MsG0380017793.01.T01 MTR_1g022485 64.458 332 84 3 3 325 34 340 1.34e-151 432
MsG0380017793.01.T01 MTR_5g023110 37.500 136 79 3 191 325 180 310 1.69e-22 97.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017793.01.T02 AT1G75380 63.609 327 85 3 10 325 3 306 9.49e-146 416
MsG0380017793.01.T02 AT1G75380 63.609 327 85 3 10 325 3 306 9.49e-146 416
MsG0380017793.01.T02 AT1G75380 63.609 327 85 3 10 325 3 306 9.49e-146 416
MsG0380017793.01.T02 AT1G75380 63.609 327 85 3 10 325 3 306 9.49e-146 416
MsG0380017793.01.T02 AT1G19660 64.127 315 89 3 29 342 36 327 1.54e-143 410
MsG0380017793.01.T02 AT1G19660 66.779 298 75 3 29 325 36 310 1.58e-142 408
MsG0380017793.01.T02 AT1G19660 66.779 298 75 3 29 325 36 310 1.58e-142 408
MsG0380017793.01.T02 AT5G66050 33.333 198 102 6 130 325 49 218 1.33e-19 87.4
MsG0380017793.01.T02 AT5G66050 33.333 198 102 6 130 325 143 312 2.22e-19 88.6
MsG0380017793.01.T02 AT5G66050 33.333 198 102 6 130 325 143 312 2.72e-19 88.2
MsG0380017793.01.T02 AT5G66050 32.292 192 100 6 130 319 143 306 1.53e-16 80.1
MsG0380017793.01.T01 AT1G75380 63.609 327 85 3 10 325 3 306 9.49e-146 416
MsG0380017793.01.T01 AT1G75380 63.609 327 85 3 10 325 3 306 9.49e-146 416
MsG0380017793.01.T01 AT1G75380 63.609 327 85 3 10 325 3 306 9.49e-146 416
MsG0380017793.01.T01 AT1G75380 63.609 327 85 3 10 325 3 306 9.49e-146 416
MsG0380017793.01.T01 AT1G19660 64.127 315 89 3 29 342 36 327 1.54e-143 410
MsG0380017793.01.T01 AT1G19660 66.779 298 75 3 29 325 36 310 1.58e-142 408
MsG0380017793.01.T01 AT1G19660 66.779 298 75 3 29 325 36 310 1.58e-142 408
MsG0380017793.01.T01 AT5G66050 33.333 198 102 6 130 325 49 218 1.33e-19 87.4
MsG0380017793.01.T01 AT5G66050 33.333 198 102 6 130 325 143 312 2.22e-19 88.6
MsG0380017793.01.T01 AT5G66050 33.333 198 102 6 130 325 143 312 2.72e-19 88.2
MsG0380017793.01.T01 AT5G66050 32.292 192 100 6 130 319 143 306 1.53e-16 80.1

Find 11 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTAATTTAATTTAACTAT+TGG 0.308594 3:+100705242 None:intergenic
TTCTTGTTTGTGTAATGTAA+AGG 0.455596 3:+100705372 None:intergenic
TTGGTACATAATAATAAGAA+TGG 0.481356 3:+100705261 None:intergenic
AAATAGAGAAAATTAAGATC+TGG 0.494243 3:+100705299 None:intergenic
TTTACATTACACAAACAAGA+AGG 0.551341 3:-100705370 MsG0380017793.01.T01:five_prime_UTR
AAATTAAATTAAAACGAGAT+CGG 0.553672 3:-100705228 MsG0380017793.01.T01:five_prime_UTR
GATCGGTGATTCATCTTACA+AGG 0.563496 3:-100705211 MsG0380017793.01.T01:intron
AAATGAAGAGAAGAAAGAAG+AGG 0.566491 3:+100705337 None:intergenic
TGATGCTTGCGGTGGAAGAA+CGG 0.631473 3:-100705448 MsG0380017793.01.T02:intron
CTAATTGAAGATGATGCTTG+CGG 0.642764 3:-100705459 MsG0380017793.01.T02:five_prime_UTR
ATTGAAGATGATGCTTGCGG+TGG 0.668358 3:-100705456 MsG0380017793.01.T02:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATAAAATAAATAAT+TGG + Chr3:100703139-100703158 None:intergenic 0.0%
!! ATAAAATAAAATAAATAATT+GGG + Chr3:100703138-100703157 None:intergenic 0.0%
!! TCATAAAAATTGAATTAATT+AGG + Chr3:100702437-100702456 None:intergenic 10.0%
!!! ATGAAAATAAAATAGTTTTA+TGG + Chr3:100702929-100702948 None:intergenic 10.0%
!!! TGAAAATAAAATAGTTTTAT+GGG + Chr3:100702928-100702947 None:intergenic 10.0%
!!! TTAATAACTAATTTGAAATT+AGG - Chr3:100702458-100702477 MsG0380017793.01.T01:CDS 10.0%
!! AAATTAAATTAAAACGAGAT+CGG - Chr3:100702381-100702400 MsG0380017793.01.T01:intron 15.0%
!!! ACAGTTACTTTAAAAAAAAA+TGG + Chr3:100703503-100703522 None:intergenic 15.0%
!!! ATTTGAAATTAGGTTAATTT+TGG - Chr3:100702468-100702487 MsG0380017793.01.T01:CDS 15.0%
!!! CAAAGATATTTTTTAAGTTT+AGG + Chr3:100702197-100702216 None:intergenic 15.0%
!!! GTGAAAAATTGTTTTTTTAT+TGG - Chr3:100702818-100702837 MsG0380017793.01.T01:CDS 15.0%
!! AAATAGAGAAAATTAAGATC+TGG + Chr3:100702313-100702332 None:intergenic 20.0%
!! ACTACAATACAATTAAGATT+AGG + Chr3:100704207-100704226 None:intergenic 20.0%
!! AGAGTAAAATAAAATTTCCA+AGG + Chr3:100703556-100703575 None:intergenic 20.0%
!! ATTACTCATAAAAAAGTTGT+AGG + Chr3:100703286-100703305 None:intergenic 20.0%
!! TATCTATACACTAAAGAAAT+TGG - Chr3:100703321-100703340 MsG0380017793.01.T01:CDS 20.0%
!! TCATCACCAAAATAATATAT+AGG + Chr3:100703873-100703892 None:intergenic 20.0%
!! TTGGTACATAATAATAAGAA+TGG + Chr3:100702351-100702370 None:intergenic 20.0%
!! TTGTTTATCAAAGATTTAAC+TGG - Chr3:100704711-100704730 MsG0380017793.01.T01:intron 20.0%
!!! GAAATTTTATTTTACTCTCA+TGG - Chr3:100703558-100703577 MsG0380017793.01.T01:intron 20.0%
!!! TATCATACAAGTTTACTTTT+TGG - Chr3:100703845-100703864 MsG0380017793.01.T01:CDS 20.0%
!!! TTGGATCCTATATATTATTT+TGG - Chr3:100703864-100703883 MsG0380017793.01.T01:CDS 20.0%
!!! TTGTGAAAATAAATTTGTTG+TGG - Chr3:100703582-100703601 MsG0380017793.01.T01:intron 20.0%
! AAAAGACATACAAACGATTA+TGG + Chr3:100703780-100703799 None:intergenic 25.0%
! AAAGACATACAAACGATTAT+GGG + Chr3:100703779-100703798 None:intergenic 25.0%
! AATTTGAACTATATCACTTG+AGG + Chr3:100703424-100703443 None:intergenic 25.0%
! ATGGAGAATCAATAAAACAA+CGG + Chr3:100703484-100703503 None:intergenic 25.0%
! GAAAATCAATAATGATTAGC+AGG + Chr3:100705279-100705298 None:intergenic 25.0%
! GAGAATATGTTACAGAAAAA+CGG + Chr3:100704055-100704074 None:intergenic 25.0%
! GTAAATTAATCACATGTGTA+TGG - Chr3:100703194-100703213 MsG0380017793.01.T01:intron 25.0%
! TAAAAAAGTTGTAGGTATAG+TGG + Chr3:100703278-100703297 None:intergenic 25.0%
! TACTTTATATCAAGTAGTGA+AGG - Chr3:100704120-100704139 MsG0380017793.01.T01:intron 25.0%
! TATACAAGTCAACAAGTATT+TGG - Chr3:100704755-100704774 MsG0380017793.01.T01:intron 25.0%
! TCATATATGCTTAGTTTAGT+TGG - Chr3:100702796-100702815 MsG0380017793.01.T01:CDS 25.0%
! TTCACTACTTGATATAAAGT+AGG + Chr3:100704121-100704140 None:intergenic 25.0%
! TTGCATTAGTAGTAAAATGT+TGG - Chr3:100704016-100704035 MsG0380017793.01.T01:intron 25.0%
! TTGTAGTAGAATTGAATTGT+GGG - Chr3:100702582-100702601 MsG0380017793.01.T01:intron 25.0%
! TTTACATTACACAAACAAGA+AGG - Chr3:100702239-100702258 MsG0380017793.01.T01:intron 25.0%
!! ACATTTTACTACTAATGCAA+TGG + Chr3:100704016-100704035 None:intergenic 25.0%
!! TTCTTGTTTGTGTAATGTAA+AGG + Chr3:100702240-100702259 None:intergenic 25.0%
!!! GTATTACTTGTTTTTGGTAT+AGG - Chr3:100704419-100704438 MsG0380017793.01.T01:intron 25.0%
!!! GTTTTTGAAGATACATTTCA+AGG - Chr3:100704873-100704892 MsG0380017793.01.T01:CDS 25.0%
AAAACTTCTAGGTTCCATTT+AGG + Chr3:100704648-100704667 None:intergenic 30.0%
AAATGAAGAGAAGAAAGAAG+AGG + Chr3:100702275-100702294 None:intergenic 30.0%
AAGACATACAAACGATTATG+GGG + Chr3:100703778-100703797 None:intergenic 30.0%
AATTCTACTATTCTTGAAGC+AGG - Chr3:100702760-100702779 MsG0380017793.01.T01:intron 30.0%
ACACTAATTACTAACTCATG+CGG + Chr3:100702863-100702882 None:intergenic 30.0%
AGTATTCATAATCTCTGTTC+TGG - Chr3:100704917-100704936 MsG0380017793.01.T01:CDS 30.0%
AGTTTCAACTCATCTTCAAA+TGG - Chr3:100702688-100702707 MsG0380017793.01.T01:intron 30.0%
ATAAATAATTGGGTCTGTAC+TGG + Chr3:100703128-100703147 None:intergenic 30.0%
ATTCATGATGCAACATAGAA+AGG + Chr3:100703807-100703826 None:intergenic 30.0%
CAACCATATAGTTAGTTGTT+TGG + Chr3:100704083-100704102 None:intergenic 30.0%
CATATTTACATGGCAAGAAA+GGG + Chr3:100702641-100702660 None:intergenic 30.0%
CATTATTTACTGAACTGGAT+CGG - Chr3:100704847-100704866 MsG0380017793.01.T01:intron 30.0%
GAACCAAACAACTAACTATA+TGG - Chr3:100704077-100704096 MsG0380017793.01.T01:intron 30.0%
GAATTTGATCCAAAACTTCT+AGG + Chr3:100704659-100704678 None:intergenic 30.0%
GATCCAGTTCAGTAAATAAT+GGG + Chr3:100704848-100704867 None:intergenic 30.0%
GATGAACCACAAAATTACAT+TGG + Chr3:100703906-100703925 None:intergenic 30.0%
GGACCAACTTAATCAATTTA+GGG - Chr3:100705396-100705415 MsG0380017793.01.T01:five_prime_UTR 30.0%
GTAGGTTTGAATGGATAAAA+TGG - Chr3:100702495-100702514 MsG0380017793.01.T01:CDS 30.0%
GTTGTAGTAGAATTGAATTG+TGG - Chr3:100702581-100702600 MsG0380017793.01.T01:intron 30.0%
TCACAAGATTACATTTCTTG+TGG - Chr3:100705297-100705316 MsG0380017793.01.T01:five_prime_UTR 30.0%
TCATATTTACATGGCAAGAA+AGG + Chr3:100702642-100702661 None:intergenic 30.0%
TGCACTTTCTCATATTTACA+TGG + Chr3:100702651-100702670 None:intergenic 30.0%
TGTAGTAGAATTGAATTGTG+GGG - Chr3:100702583-100702602 MsG0380017793.01.T01:intron 30.0%
TTCATGATGCAACATAGAAA+GGG + Chr3:100703806-100703825 None:intergenic 30.0%
! AACTATATGGTTGATGTAAC+AGG - Chr3:100704090-100704109 MsG0380017793.01.T01:intron 30.0%
! ACAGAAAAACGGAATCATTT+TGG + Chr3:100704044-100704063 None:intergenic 30.0%
! ATACTATTGGATTTTACGTC+AGG + Chr3:100703252-100703271 None:intergenic 30.0%
! GATAAAATGGTTTGTGTGAA+AGG - Chr3:100702508-100702527 MsG0380017793.01.T01:CDS 30.0%
! TAAATGGAACCTAGAAGTTT+TGG - Chr3:100704647-100704666 MsG0380017793.01.T01:intron 30.0%
! TCTCTTCCAATGTAATTTTG+TGG - Chr3:100703897-100703916 MsG0380017793.01.T01:CDS 30.0%
! TGGTTCATCTTTATTTGTAG+TGG - Chr3:100703917-100703936 MsG0380017793.01.T01:CDS 30.0%
! TTTTATAAGACTAGAAGCCT+TGG - Chr3:100703536-100703555 MsG0380017793.01.T01:intron 30.0%
!! AAATCTGGTTTCTTTTTGTG+TGG + Chr3:100704391-100704410 None:intergenic 30.0%
!! CTGACAGTATTACTTGTTTT+TGG - Chr3:100704413-100704432 MsG0380017793.01.T01:intron 30.0%
!!! TACTTGTTTTTGGTATAGGT+TGG - Chr3:100704423-100704442 MsG0380017793.01.T01:intron 30.0%
!!! TAGGTTAATTTTGGTTGTGT+AGG - Chr3:100702477-100702496 MsG0380017793.01.T01:CDS 30.0%
AACTCATCTTCAAATGGTAG+TGG - Chr3:100702694-100702713 MsG0380017793.01.T01:intron 35.0%
AAGAGTTACTAAGAGAGTTC+AGG - Chr3:100704300-100704319 MsG0380017793.01.T01:intron 35.0%
AAGGAGATGATTGACAAGAT+GGG - Chr3:100704139-100704158 MsG0380017793.01.T01:intron 35.0%
AATCCAAGGAATGTGAAACT+TGG + Chr3:100704597-100704616 None:intergenic 35.0%
ACAATATATCTTTCGTGTGC+AGG - Chr3:100704267-100704286 MsG0380017793.01.T01:intron 35.0%
AGATTCGAAGATATCTTTCG+AGG + Chr3:100704966-100704985 None:intergenic 35.0%
ATATAGTTCAAATTCCACCC+GGG - Chr3:100703430-100703449 MsG0380017793.01.T01:intron 35.0%
ATGAATTACCTTGCATCTGA+CGG + Chr3:100704505-100704524 None:intergenic 35.0%
ATGGGTTCATAGTCAAAATG+AGG - Chr3:100703639-100703658 MsG0380017793.01.T01:intron 35.0%
CAAGAGTAAAAACACAGGTA+AGG + Chr3:100705184-100705203 None:intergenic 35.0%
CAGAAAAGAAAGCGAATAAC+AGG - Chr3:100705419-100705438 MsG0380017793.01.T01:five_prime_UTR 35.0%
CGATCCAGTTCAGTAAATAA+TGG + Chr3:100704849-100704868 None:intergenic 35.0%
CTAATTGAAGATGATGCTTG+CGG - Chr3:100702150-100702169 MsG0380017793.01.T01:CDS 35.0%
CTGCCCTAAATTGATTAAGT+TGG + Chr3:100705402-100705421 None:intergenic 35.0%
GATATAGTTCAAATTCCACC+CGG - Chr3:100703429-100703448 MsG0380017793.01.T01:intron 35.0%
GGAATGAGAGTAATTGAATC+AGG - Chr3:100704789-100704808 MsG0380017793.01.T01:intron 35.0%
GGGACCAACTTAATCAATTT+AGG - Chr3:100705395-100705414 MsG0380017793.01.T01:five_prime_UTR 35.0%
GGTATAGTGGTACATACTAT+TGG + Chr3:100703265-100703284 None:intergenic 35.0%
GTAATACTGTCAGACAAATC+TGG + Chr3:100704406-100704425 None:intergenic 35.0%
TATCTTCGAATCTGTCTCAT+TGG - Chr3:100704973-100704992 MsG0380017793.01.T01:CDS 35.0%
TGACTTATTTGCAGACCAAA+TGG - Chr3:100705045-100705064 MsG0380017793.01.T01:CDS 35.0%
TGGGTTCATAGTCAAAATGA+GGG - Chr3:100703640-100703659 MsG0380017793.01.T01:intron 35.0%
TGTTGCATCATGAATCTCTA+TGG - Chr3:100703812-100703831 MsG0380017793.01.T01:CDS 35.0%
TTCATAGTCAAAATGAGGGA+TGG - Chr3:100703644-100703663 MsG0380017793.01.T01:intron 35.0%
TTTGGCAAATGTTGCCTAAA+TGG - Chr3:100704631-100704650 MsG0380017793.01.T01:intron 35.0%
TTTGGTTGTGTAGGTTTGAA+TGG - Chr3:100702486-100702505 MsG0380017793.01.T01:CDS 35.0%
! AAGTATTTGGCTTACAGTGA+TGG - Chr3:100704768-100704787 MsG0380017793.01.T01:intron 35.0%
! AATCATTTTACAATAGCCCC+CGG + Chr3:100703451-100703470 None:intergenic 35.0%
! GATTCACTGGTACAAAGTTT+TGG - Chr3:100704613-100704632 MsG0380017793.01.T01:intron 35.0%
! GGAAAGTATGAACTTTACCT+TGG + Chr3:100704353-100704372 None:intergenic 35.0%
! GTGGTTTTTATGTGTAGTTG+AGG - Chr3:100703601-100703620 MsG0380017793.01.T01:intron 35.0%
! TGGTTTCTTTTTGTGTGGTT+TGG + Chr3:100704386-100704405 None:intergenic 35.0%
!! CTTACCTGTGTTTTTACTCT+TGG - Chr3:100705182-100705201 MsG0380017793.01.T01:intron 35.0%
!! TTCAAATGGTAGTGGAAGTA+TGG - Chr3:100702702-100702721 MsG0380017793.01.T01:intron 35.0%
AAAATCAAGTTATCGCCCAG+GGG + Chr3:100703397-100703416 None:intergenic 40.0%
AACTCCTTGGTTTCAACACA+AGG + Chr3:100705075-100705094 None:intergenic 40.0%
ACAAAATCAAGTTATCGCCC+AGG + Chr3:100703399-100703418 None:intergenic 40.0%
ACATGGCAAGAAAGGGAATT+AGG + Chr3:100702634-100702653 None:intergenic 40.0%
ACCTCCAAGAGTAAAAACAC+AGG + Chr3:100705189-100705208 None:intergenic 40.0%
ACTTTGTACCAGTGAATCCA+AGG + Chr3:100704611-100704630 None:intergenic 40.0%
AGTTACTAAGAGAGTTCAGG+AGG - Chr3:100704303-100704322 MsG0380017793.01.T01:intron 40.0%
ATCGAACTAACTGTAGTGTG+TGG - Chr3:100703027-100703046 MsG0380017793.01.T01:intron 40.0%
ATGCTGCCAAAGTTAGCAAT+CGG - Chr3:100703000-100703019 MsG0380017793.01.T01:intron 40.0%
ATTGTGTTGAAGATGGAGGA+TGG - Chr3:100703737-100703756 MsG0380017793.01.T01:intron 40.0%
ATTTACTGAACTGGATCGGT+AGG - Chr3:100704851-100704870 MsG0380017793.01.T01:CDS 40.0%
CAAAACTATTACCAGCGTCT+TGG + Chr3:100705143-100705162 None:intergenic 40.0%
CAAAATCAAGTTATCGCCCA+GGG + Chr3:100703398-100703417 None:intergenic 40.0%
GAAGGAGATGATTGACAAGA+TGG - Chr3:100704138-100704157 MsG0380017793.01.T01:intron 40.0%
GATCGGTGATTCATCTTACA+AGG - Chr3:100702398-100702417 MsG0380017793.01.T01:intron 40.0%
GTGCAAAAGATTGAACTCCT+TGG + Chr3:100705088-100705107 None:intergenic 40.0%
TATAGTTCAAATTCCACCCG+GGG - Chr3:100703431-100703450 MsG0380017793.01.T01:intron 40.0%
TCAACACAAGGCTTACCATT+TGG + Chr3:100705063-100705082 None:intergenic 40.0%
TCCATCTTCAACACAATTGC+AGG + Chr3:100703734-100703753 None:intergenic 40.0%
TCCTGCAATTGTGTTGAAGA+TGG - Chr3:100703730-100703749 MsG0380017793.01.T01:intron 40.0%
TCGAACTAACTGTAGTGTGT+GGG - Chr3:100703028-100703047 MsG0380017793.01.T01:intron 40.0%
TGCAATTGTGTTGAAGATGG+AGG - Chr3:100703733-100703752 MsG0380017793.01.T01:intron 40.0%
TGCTCAGCTATATCTTTCCA+AGG - Chr3:100704333-100704352 MsG0380017793.01.T01:intron 40.0%
TGGCCCATTATTTACTGAAC+TGG - Chr3:100704842-100704861 MsG0380017793.01.T01:intron 40.0%
TGTATAGTCACCTACAACGT+TGG + Chr3:100704741-100704760 None:intergenic 40.0%
TTCAACACAATTGCAGGATG+TGG + Chr3:100703728-100703747 None:intergenic 40.0%
TTCACATTCCTTGGATTCAC+TGG - Chr3:100704600-100704619 MsG0380017793.01.T01:intron 40.0%
TTTCCACATGCAACTTACAC+AGG + Chr3:100704561-100704580 None:intergenic 40.0%
! AAGTGTCTTGTTAATGGCAG+CGG - Chr3:100703947-100703966 MsG0380017793.01.T01:CDS 40.0%
! AGTGTTGCTATGCCTATGAT+TGG - Chr3:100702544-100702563 MsG0380017793.01.T01:CDS 40.0%
! ATCACACCGATTGCTAACTT+TGG + Chr3:100703009-100703028 None:intergenic 40.0%
! ATCATTTTACAATAGCCCCC+GGG + Chr3:100703450-100703469 None:intergenic 40.0%
! GATGCCAAGTGTCTTGTTAA+TGG - Chr3:100703941-100703960 MsG0380017793.01.T01:CDS 40.0%
! TAAGCCTTGTGTTGAAACCA+AGG - Chr3:100705068-100705087 MsG0380017793.01.T01:CDS 40.0%
! TAGGAGTATGCAACAGCAAA+GGG + Chr3:100704188-100704207 None:intergenic 40.0%
! TTAGGAGTATGCAACAGCAA+AGG + Chr3:100704189-100704208 None:intergenic 40.0%
!! ACCTGTGTTTTTACTCTTGG+AGG - Chr3:100705185-100705204 MsG0380017793.01.T01:intron 40.0%
!! GCAATGTTGATAGCATCTGA+AGG + Chr3:100704483-100704502 None:intergenic 40.0%
!!! AGGCACAATTTTTTGCAGGT+CGG + Chr3:100703349-100703368 None:intergenic 40.0%
!!! AGTGAGGCACAATTTTTTGC+AGG + Chr3:100703353-100703372 None:intergenic 40.0%
!!! CTTTTTGTGTGGTTTGGTGA+GGG + Chr3:100704380-100704399 None:intergenic 40.0%
!!! TCTTTTTGTGTGGTTTGGTG+AGG + Chr3:100704381-100704400 None:intergenic 40.0%
!!! TTTTTGTGTGGTTTGGTGAG+GGG + Chr3:100704379-100704398 None:intergenic 40.0%
ATAGTCACCTACAACGTTGG+TGG + Chr3:100704738-100704757 None:intergenic 45.0%
ATAGTTCAAATTCCACCCGG+GGG - Chr3:100703432-100703451 MsG0380017793.01.T01:intron 45.0%
ATGATTGGACCAATCAACGC+TGG - Chr3:100702559-100702578 MsG0380017793.01.T01:intron 45.0%
ATGGTGTACTCCAGTGGTAA+TGG - Chr3:100703213-100703232 MsG0380017793.01.T01:intron 45.0%
ATGTGTATGGTGTACTCCAG+TGG - Chr3:100703207-100703226 MsG0380017793.01.T01:intron 45.0%
ATTGAAGATGATGCTTGCGG+TGG - Chr3:100702153-100702172 MsG0380017793.01.T01:CDS 45.0%
CAGCCAAGTTTCACATTCCT+TGG - Chr3:100704591-100704610 MsG0380017793.01.T01:intron 45.0%
GCTGCCATTAACAAGACACT+TGG + Chr3:100703948-100703967 None:intergenic 45.0%
TCACCTGTGTAAGTTGCATG+TGG - Chr3:100704555-100704574 MsG0380017793.01.T01:intron 45.0%
TCAGCTTAGTGGCGAGAATA+GGG - Chr3:100703060-100703079 MsG0380017793.01.T01:intron 45.0%
TGATAGCATCTGAAGGTCGA+AGG + Chr3:100704476-100704495 None:intergenic 45.0%
TGTGTAGTTGAGGTGAAGAG+TGG - Chr3:100703611-100703630 MsG0380017793.01.T01:intron 45.0%
TTGAAGATGGAGGATGGAAC+TGG - Chr3:100703743-100703762 MsG0380017793.01.T01:intron 45.0%
! GATTTTACGTCAGGTACTCC+GGG + Chr3:100703243-100703262 None:intergenic 45.0%
! GGATTTTACGTCAGGTACTC+CGG + Chr3:100703244-100703263 None:intergenic 45.0%
!! AATAATGGGCCATCTGAACC+AGG + Chr3:100704834-100704853 None:intergenic 45.0%
!! ATAATGGGCCATCTGAACCA+GGG + Chr3:100704833-100704852 None:intergenic 45.0%
!! CTACTACAACCAGCGTTGAT+TGG + Chr3:100702571-100702590 None:intergenic 45.0%
!! GCGTTGATTGGTCCAATCAT+AGG + Chr3:100702559-100702578 None:intergenic 45.0%
!!! TGTGCCTCACTGATTTTGTG+AGG - Chr3:100703362-100703381 MsG0380017793.01.T01:intron 45.0%
!!! TTTTGTGTGGTTTGGTGAGG+GGG + Chr3:100704378-100704397 None:intergenic 45.0%
!!! ATTTAATTTAATTTAACTAT+TGG + Chr3:100702370-100702389 None:intergenic 5.0%
AAACTGTCAACTCAGTCCCC+TGG - Chr3:100704813-100704832 MsG0380017793.01.T01:intron 50.0%
AACTGGTCCACCAACGTTGT+AGG - Chr3:100704728-100704747 MsG0380017793.01.T01:intron 50.0%
AACTGTAGTGTGTGGGCAAG+AGG - Chr3:100703035-100703054 MsG0380017793.01.T01:intron 50.0%
AGGTGAAGAGTGGAGGAGAT+GGG - Chr3:100703621-100703640 MsG0380017793.01.T01:intron 50.0%
CAACATTGCCGTCAGATGCA+AGG - Chr3:100704494-100704513 MsG0380017793.01.T01:intron 50.0%
CAGCTTAGTGGCGAGAATAG+GGG - Chr3:100703061-100703080 MsG0380017793.01.T01:intron 50.0%
CTGGCCTCACAAAATCAGTG+AGG + Chr3:100703369-100703388 None:intergenic 50.0%
GCAGGATGTGGTGCATAATC+CGG + Chr3:100703716-100703735 None:intergenic 50.0%
GTAGTTGAGGTGAAGAGTGG+AGG - Chr3:100703614-100703633 MsG0380017793.01.T01:intron 50.0%
GTCAGCTTAGTGGCGAGAAT+AGG - Chr3:100703059-100703078 MsG0380017793.01.T01:intron 50.0%
TGATGCTTGCGGTGGAAGAA+CGG - Chr3:100702161-100702180 MsG0380017793.01.T01:CDS 50.0%
! ATTTTACAATAGCCCCCGGG+TGG + Chr3:100703447-100703466 None:intergenic 50.0%
! TAATGGGCCATCTGAACCAG+GGG + Chr3:100704832-100704851 None:intergenic 50.0%
!! ATGCAACTCTAGCTCTGTGG+AGG - Chr3:100705374-100705393 MsG0380017793.01.T01:five_prime_UTR 50.0%
!! CTGATGCAACTCTAGCTCTG+TGG - Chr3:100705371-100705390 MsG0380017793.01.T01:five_prime_UTR 50.0%
!! TGCAACTCTAGCTCTGTGGA+GGG - Chr3:100705375-100705394 MsG0380017793.01.T01:five_prime_UTR 50.0%
!!! CTCACTGATTTTGTGAGGCC+AGG - Chr3:100703367-100703386 MsG0380017793.01.T01:intron 50.0%
AATAGGGGCGGACCTAGACT+AGG - Chr3:100703076-100703095 MsG0380017793.01.T01:intron 55.0%
ACTCAGTCCCCTGGTTCAGA+TGG - Chr3:100704822-100704841 MsG0380017793.01.T01:intron 55.0%
AGCACTTGCCACACCGGTAT+GGG + Chr3:100703102-100703121 None:intergenic 55.0%
ATCAAGTTATCGCCCAGGGG+CGG + Chr3:100703394-100703413 None:intergenic 55.0%
CTTAGTGGCGAGAATAGGGG+CGG - Chr3:100703064-100703083 MsG0380017793.01.T01:intron 55.0%
GACCTAGACTAGGCCCATAC+CGG - Chr3:100703086-100703105 MsG0380017793.01.T01:intron 55.0%
GAGGTGAAGAGTGGAGGAGA+TGG - Chr3:100703620-100703639 MsG0380017793.01.T01:intron 55.0%
GTCCATAACAGCCCTCATGG+AGG - Chr3:100703683-100703702 MsG0380017793.01.T01:intron 55.0%
GTCCTCCATGAGGGCTGTTA+TGG + Chr3:100703688-100703707 None:intergenic 55.0%
TAGCACTTGCCACACCGGTA+TGG + Chr3:100703103-100703122 None:intergenic 55.0%
TGCGTCCATAACAGCCCTCA+TGG - Chr3:100703680-100703699 MsG0380017793.01.T01:intron 55.0%
TGGTGTAGCACTTGCCACAC+CGG + Chr3:100703108-100703127 None:intergenic 55.0%
!! GGCAAGAGGTGTCAGCTTAG+TGG - Chr3:100703049-100703068 MsG0380017793.01.T01:intron 55.0%
AGACTAGGCCCATACCGGTG+TGG - Chr3:100703091-100703110 MsG0380017793.01.T01:intron 60.0%
CACCGGTATGGGCCTAGTCT+AGG + Chr3:100703091-100703110 None:intergenic 60.0%
CCCTCATGGAGGACTTCTGC+CGG - Chr3:100703694-100703713 MsG0380017793.01.T01:intron 60.0%
CCGGCAGAAGTCCTCCATGA+GGG + Chr3:100703697-100703716 None:intergenic 60.0%
TCCGGCAGAAGTCCTCCATG+AGG + Chr3:100703698-100703717 None:intergenic 60.0%
!! GAAGAGCGCTACCAAGACGC+TGG - Chr3:100705129-100705148 MsG0380017793.01.T01:intron 60.0%
!! GTGTGGTTTGGTGAGGGGGA+AGG + Chr3:100704374-100704393 None:intergenic 60.0%
!! TCCAGTGGTAATGGTGCGCC+CGG - Chr3:100703222-100703241 MsG0380017793.01.T01:intron 60.0%
TCCGGGCGCACCATTACCAC+TGG + Chr3:100703226-100703245 None:intergenic 65.0%
TTATCGCCCAGGGGCGGACC+TGG + Chr3:100703388-100703407 None:intergenic 70.0%
GTGAGGCCAGGTCCGCCCCT+GGG - Chr3:100703379-100703398 MsG0380017793.01.T01:intron 75.0%
TGTGAGGCCAGGTCCGCCCC+TGG - Chr3:100703378-100703397 MsG0380017793.01.T01:intron 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 100702141 100705490 100702141 ID=MsG0380017793.01;Name=MsG0380017793.01
Chr3 mRNA 100702141 100705444 100702141 ID=MsG0380017793.01.T01;Parent=MsG0380017793.01;Name=MsG0380017793.01.T01;_AED=0.47;_eAED=0.48;_QI=239|0.77|0.7|1|0.66|0.5|10|0|377
Chr3 exon 100705212 100705444 100705212 ID=MsG0380017793.01.T01:exon:27401;Parent=MsG0380017793.01.T01
Chr3 five_prime_UTR 100705212 100705444 100705212 ID=MsG0380017793.01.T01:five_prime_utr;Parent=MsG0380017793.01.T01
Chr3 five_prime_UTR 100705127 100705132 100705127 ID=MsG0380017793.01.T01:five_prime_utr;Parent=MsG0380017793.01.T01
Chr3 CDS 100704850 100705126 100704850 ID=MsG0380017793.01.T01:cds;Parent=MsG0380017793.01.T01
Chr3 CDS 100703777 100704013 100703777 ID=MsG0380017793.01.T01:cds;Parent=MsG0380017793.01.T01
Chr3 CDS 100703645 100703694 100703645 ID=MsG0380017793.01.T01:cds;Parent=MsG0380017793.01.T01
Chr3 CDS 100703463 100703519 100703463 ID=MsG0380017793.01.T01:cds;Parent=MsG0380017793.01.T01
Chr3 CDS 100703277 100703342 100703277 ID=MsG0380017793.01.T01:cds;Parent=MsG0380017793.01.T01
Chr3 CDS 100703116 100703190 100703116 ID=MsG0380017793.01.T01:cds;Parent=MsG0380017793.01.T01
Chr3 CDS 100702763 100702881 100702763 ID=MsG0380017793.01.T01:cds;Parent=MsG0380017793.01.T01
Chr3 CDS 100702425 100702572 100702425 ID=MsG0380017793.01.T01:cds;Parent=MsG0380017793.01.T01
Chr3 CDS 100702141 100702245 100702141 ID=MsG0380017793.01.T01:cds;Parent=MsG0380017793.01.T01
Chr3 mRNA 100702141 100705490 100702141 ID=MsG0380017793.01.T02;Parent=MsG0380017793.01;Name=MsG0380017793.01.T02;_AED=0.48;_eAED=0.48;_QI=48|0.77|0.7|1|0.66|0.5|10|0|377
Chr3 exon 100705449 100705490 100705449 ID=MsG0380017793.01.T02:exon:27411;Parent=MsG0380017793.01.T02
Chr3 five_prime_UTR 100705449 100705490 100705449 ID=MsG0380017793.01.T02:five_prime_utr;Parent=MsG0380017793.01.T02
Chr3 five_prime_UTR 100705127 100705132 100705127 ID=MsG0380017793.01.T02:five_prime_utr;Parent=MsG0380017793.01.T02
Chr3 CDS 100704850 100705126 100704850 ID=MsG0380017793.01.T02:cds;Parent=MsG0380017793.01.T02
Chr3 CDS 100703777 100704013 100703777 ID=MsG0380017793.01.T02:cds;Parent=MsG0380017793.01.T02
Chr3 CDS 100703645 100703694 100703645 ID=MsG0380017793.01.T02:cds;Parent=MsG0380017793.01.T02
Chr3 CDS 100703463 100703519 100703463 ID=MsG0380017793.01.T02:cds;Parent=MsG0380017793.01.T02
Chr3 CDS 100703277 100703342 100703277 ID=MsG0380017793.01.T02:cds;Parent=MsG0380017793.01.T02
Chr3 CDS 100703116 100703190 100703116 ID=MsG0380017793.01.T02:cds;Parent=MsG0380017793.01.T02
Chr3 CDS 100702763 100702881 100702763 ID=MsG0380017793.01.T02:cds;Parent=MsG0380017793.01.T02
Chr3 CDS 100702425 100702572 100702425 ID=MsG0380017793.01.T02:cds;Parent=MsG0380017793.01.T02
Chr3 CDS 100702141 100702245 100702141 ID=MsG0380017793.01.T02:cds;Parent=MsG0380017793.01.T02
Gene Sequence

>MsG0380017793.01.T02

ATGGATAAAATGGTTTGTGTGAAAGGATCAGCTATGTGCAGTGTTGCTATGCCTATGATTGGACCAATCAACGCTGGTTGTAGTAGAATTGAATTGTGGGGATTCAGTGCTAGTAACAAAATCAAGCCTAATTCCCTTTCTTGCCATGTAAATATGAGAAAGTGCAGAACTGTGATGAATTGCAGTTTCAACTCATCTTCAAATGGTAGTGGAAGTATGGCTGAAAATTTTAATGAAAATGATGAAGATTATGTTAATTCTACTATTCTTGAAGCAGTTGAGGTGAAGAGTGGAGGAGATGGGTTCATAGTCAAAATGAGGGATGGTAGACACTTGAGATGCGTCCATAACAGCCCTCATGGAGGACTTCTGCCGGATTATGCACCACATCCTGCAATTGTGTTGAAGATGGAGGATGGAACTGGTTTACTTCTCCCCATAATCGTTTGTATGTCTTTTACTCCCTTTCTATGTTGCATCATGAATCTCTATGGAATTGCATTGTATCATACAATGGAGATGCCAAGTGTCTTGTTAATGGCAGCGGTTCGCAATGTTCAAATAGCTAGACCTACTTTATATCAAGTAGTGAAGGAGATGATTGACAAGATGGGTTATGAAGTCAGAGCTGTAAGAGTTACTAAGAGAGTTCAGGAGGCATATTTTGCTCAGCTATATCTTTCCAAGGTTGGAAATGAGTCAGAATGTATGAGCTTTGACCTTCGACCTTCAGATGCTATCAACATTGCCGTCAGATGCAAGGTGACTATACAAGTCAACAAGTATTTGGCTTACAGTGATGGAATGAGAGTAATTGAATCAGGCAAACTGTCAACTCAGTCCCCTGGTTCAGATGGCCCATTATTTACTGAACTGGATCGACCAAATGGTAAGCCTTGTGTTGAAACCAAGGAGTTCAATCTTTTGCACAACATGTTGACAGCTGTTGTAGAAGAGCGCTACCAAGACGCTGGTAATAGTTTTGTTTCTTTTTATTTCTTTACCTTACCTGTGTTTTTACTCTTGGAGCTCTGTGGAGGGACCAACTTAATCAATTTAGGGCAGAAAAGAAAGCGAATAACAGGTGAGTTTACTTCATATGACAAGTTGACAATGTTTGATGCTCTGTCATAA

>MsG0380017793.01.T01

ATGGATAAAATGGTTTGTGTGAAAGGATCAGCTATGTGCAGTGTTGCTATGCCTATGATTGGACCAATCAACGCTGGTTGTAGTAGAATTGAATTGTGGGGATTCAGTGCTAGTAACAAAATCAAGCCTAATTCCCTTTCTTGCCATGTAAATATGAGAAAGTGCAGAACTGTGATGAATTGCAGTTTCAACTCATCTTCAAATGGTAGTGGAAGTATGGCTGAAAATTTTAATGAAAATGATGAAGATTATGTTAATTCTACTATTCTTGAAGCAGTTGAGGTGAAGAGTGGAGGAGATGGGTTCATAGTCAAAATGAGGGATGGTAGACACTTGAGATGCGTCCATAACAGCCCTCATGGAGGACTTCTGCCGGATTATGCACCACATCCTGCAATTGTGTTGAAGATGGAGGATGGAACTGGTTTACTTCTCCCCATAATCGTTTGTATGTCTTTTACTCCCTTTCTATGTTGCATCATGAATCTCTATGGAATTGCATTGTATCATACAATGGAGATGCCAAGTGTCTTGTTAATGGCAGCGGTTCGCAATGTTCAAATAGCTAGACCTACTTTATATCAAGTAGTGAAGGAGATGATTGACAAGATGGGTTATGAAGTCAGAGCTGTAAGAGTTACTAAGAGAGTTCAGGAGGCATATTTTGCTCAGCTATATCTTTCCAAGGTTGGAAATGAGTCAGAATGTATGAGCTTTGACCTTCGACCTTCAGATGCTATCAACATTGCCGTCAGATGCAAGGTGACTATACAAGTCAACAAGTATTTGGCTTACAGTGATGGAATGAGAGTAATTGAATCAGGCAAACTGTCAACTCAGTCCCCTGGTTCAGATGGCCCATTATTTACTGAACTGGATCGACCAAATGGTAAGCCTTGTGTTGAAACCAAGGAGTTCAATCTTTTGCACAACATGTTGACAGCTGTTGTAGAAGAGCGCTACCAAGACGCTGGTAATAGTTTTGTTTCTTTTTATTTCTTTACCTTACCTGTGTTTTTACTCTTGGAGCTCTGTGGAGGGACCAACTTAATCAATTTAGGGCAGAAAAGAAAGCGAATAACAGGTGAGTTTACTTCATATGACAAGTTGACAATGTTTGATGCTCTGTCATAA
Protein sequence

>MsG0380017793.01.T02

MDKMVCVKGSAMCSVAMPMIGPINAGCSRIELWGFSASNKIKPNSLSCHVNMRKCRTVMNCSFNSSSNGSGSMAENFNENDEDYVNSTILEAVEVKSGGDGFIVKMRDGRHLRCVHNSPHGGLLPDYAPHPAIVLKMEDGTGLLLPIIVCMSFTPFLCCIMNLYGIALYHTMEMPSVLLMAAVRNVQIARPTLYQVVKEMIDKMGYEVRAVRVTKRVQEAYFAQLYLSKVGNESECMSFDLRPSDAINIAVRCKVTIQVNKYLAYSDGMRVIESGKLSTQSPGSDGPLFTELDRPNGKPCVETKEFNLLHNMLTAVVEERYQDAGNSFVSFYFFTLPVFLLLELCGGTNLINLGQKRKRITGEFTSYDKLTMFDALS*

>MsG0380017793.01.T01

MDKMVCVKGSAMCSVAMPMIGPINAGCSRIELWGFSASNKIKPNSLSCHVNMRKCRTVMNCSFNSSSNGSGSMAENFNENDEDYVNSTILEAVEVKSGGDGFIVKMRDGRHLRCVHNSPHGGLLPDYAPHPAIVLKMEDGTGLLLPIIVCMSFTPFLCCIMNLYGIALYHTMEMPSVLLMAAVRNVQIARPTLYQVVKEMIDKMGYEVRAVRVTKRVQEAYFAQLYLSKVGNESECMSFDLRPSDAINIAVRCKVTIQVNKYLAYSDGMRVIESGKLSTQSPGSDGPLFTELDRPNGKPCVETKEFNLLHNMLTAVVEERYQDAGNSFVSFYFFTLPVFLLLELCGGTNLINLGQKRKRITGEFTSYDKLTMFDALS*