AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580024872.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024872.01.T01 MTR_5g018580 96.935 261 8 0 1 261 28 288 0.0 528
MsG0580024872.01.T01 MTR_5g018580 96.198 263 8 1 1 261 1 263 0.0 523
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580024872.01.T01 AT4G37200 81.921 177 32 0 85 261 85 261 8.06e-110 317

Find 59 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTCTACTTTAGCAGCTT+TGG 0.217157 5:-11087752 MsG0580024872.01.T01:CDS
GTTATCTAACCATGACTTCT+TGG 0.244316 5:+11085416 None:intergenic
GTATTTGCTAGATTGGATTT+TGG 0.258034 5:-11087721 MsG0580024872.01.T01:CDS
CGTTATGGTTTGGGTCTGTT+TGG 0.277556 5:+11088050 None:intergenic
GCTTCTACTTTAGCAGCTTT+GGG 0.291905 5:-11087751 MsG0580024872.01.T01:CDS
GAAGGCATGGTTGGAATCTA+TGG 0.343193 5:+11088146 None:intergenic
GACGGTGGCGAGGAGGATAT+AGG 0.369271 5:+11088098 None:intergenic
CTTCATTCCCTTCTTTATCA+AGG 0.396426 5:+11085585 None:intergenic
GTTATGGTTTGGGTCTGTTT+GGG 0.401130 5:+11088051 None:intergenic
CTTCAAGATACCTGTTCATA+AGG 0.406595 5:+11087664 None:intergenic
AGTTCAGCCGTTGATTCTAA+TGG 0.408154 5:-11087820 MsG0580024872.01.T01:CDS
CAGATTGGTGTGAAGTTTGT+AGG 0.412120 5:-11085889 MsG0580024872.01.T01:CDS
AATGAAGAGGGCAATGTAGT+AGG 0.426207 5:-11085569 MsG0580024872.01.T01:CDS
TTTGCTTTCCTTGATAAAGA+AGG 0.436812 5:-11085593 MsG0580024872.01.T01:CDS
TTGTTCCAGGCTCTTTCGAA+TGG 0.436825 5:-11085938 MsG0580024872.01.T01:intron
GTGCCTCATGCACGTGTTGT+GGG 0.442631 5:-11085485 MsG0580024872.01.T01:CDS
TTTGAGAAGGTTGAAGATGA+AGG 0.443345 5:+11088128 None:intergenic
TGGGTCTGTTTGGGAAGCTA+AGG 0.445015 5:+11088060 None:intergenic
TGTTGCATTGCCTTATGAAC+AGG 0.464546 5:-11087674 MsG0580024872.01.T01:intron
TTCTAGTGCTGAAGCAAGAA+AGG 0.481673 5:-11085456 MsG0580024872.01.T01:CDS
CTTGACGAGTTCGGTGTTGA+GGG 0.483025 5:-11085626 MsG0580024872.01.T01:CDS
ATATCTTTACTTGGCAATTG+AGG 0.489525 5:+11087793 None:intergenic
TTTCTGTTGATATCTTTACT+TGG 0.491430 5:+11087784 None:intergenic
GTTGAAGATGAAGGCATGGT+TGG 0.493631 5:+11088137 None:intergenic
TGTTCCAGGCTCTTTCGAAT+GGG 0.496536 5:-11085937 MsG0580024872.01.T01:intron
CGTCTATCTTTAAATCCAAT+CGG 0.500356 5:-11088172 MsG0580024872.01.T01:CDS
ACGGTGGCGAGGAGGATATA+GGG 0.502742 5:+11088099 None:intergenic
TTGCTTTCCTTGATAAAGAA+GGG 0.507919 5:-11085592 MsG0580024872.01.T01:CDS
GCTTGACGAGTTCGGTGTTG+AGG 0.516085 5:-11085627 MsG0580024872.01.T01:CDS
GAGCAAGAGCTTGACGAGTT+CGG 0.523478 5:-11085635 MsG0580024872.01.T01:CDS
GGTGCCTCATGCACGTGTTG+TGG 0.529739 5:-11085486 MsG0580024872.01.T01:CDS
TGGAATCTATGGAGACCGAT+TGG 0.546327 5:+11088157 None:intergenic
GGTTTACTGCTACTAGTGCT+AGG 0.548648 5:+11087850 None:intergenic
GAACTTTGTGATGTTGAATG+TGG 0.557978 5:-11085672 MsG0580024872.01.T01:CDS
GTTGTTGATCCAAGAAGTCA+TGG 0.566748 5:-11085425 MsG0580024872.01.T01:CDS
TCAAACACAGGAAATAAAAG+TGG 0.572016 5:-11087881 MsG0580024872.01.T01:intron
ATCAACGGCTGAACTTGTCG+TGG 0.587303 5:+11087828 None:intergenic
AGATTGGTGTGAAGTTTGTA+GGG 0.593332 5:-11085888 MsG0580024872.01.T01:CDS
TCAACGGCTGAACTTGTCGT+GGG 0.603162 5:+11087829 None:intergenic
AGGAAGACCATTAGAATCAA+CGG 0.609450 5:+11087813 None:intergenic
GCATAGAACTCCACGACAGT+AGG 0.611746 5:+11085911 None:intergenic
AATCTGATGCGACGGTGGCG+AGG 0.613273 5:+11088088 None:intergenic
GATAAAGAAGGGAATGAAGA+GGG 0.615664 5:-11085581 MsG0580024872.01.T01:CDS
GAATGGGAAGCCTACTGTCG+TGG 0.616524 5:-11085921 MsG0580024872.01.T01:CDS
AGGTGAGGAATCTGATGCGA+CGG 0.621298 5:+11088080 None:intergenic
GCTTGCTCGTGGTGAAACAT+CGG 0.626472 5:-11085507 MsG0580024872.01.T01:CDS
TGACCCACAACACGTGCATG+AGG 0.633612 5:+11085482 None:intergenic
TGATAAAGAAGGGAATGAAG+AGG 0.637785 5:-11085582 MsG0580024872.01.T01:CDS
AACACAGGAAATAAAAGTGG+TGG 0.639879 5:-11087878 MsG0580024872.01.T01:intron
TTATCAAGGAAAGCAAAGTG+TGG 0.640685 5:+11085599 None:intergenic
CTGATGCGACGGTGGCGAGG+AGG 0.641176 5:+11088091 None:intergenic
TGAGGAATCTGATGCGACGG+TGG 0.643349 5:+11088083 None:intergenic
TCGTGGAGTTCTATGCAGAT+TGG 0.649863 5:-11085904 MsG0580024872.01.T01:CDS
TAACACTACCTCAACAACAC+CGG 0.653114 5:-11088020 MsG0580024872.01.T01:intron
GAAGGTTGAAGATGAAGGCA+TGG 0.656259 5:+11088133 None:intergenic
AATGTAGACGCGCTTGCTCG+TGG 0.674873 5:-11085518 MsG0580024872.01.T01:CDS
CTGTTTGGGAAGCTAAGGTG+AGG 0.675233 5:+11088065 None:intergenic
GAATGTGGATAACACGAAGT+GGG 0.697170 5:-11085657 MsG0580024872.01.T01:CDS
TGAATGTGGATAACACGAAG+TGG 0.714246 5:-11085658 MsG0580024872.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATAATA+CGG - Chr5:11086743-11086762 MsG0580024872.01.T01:intron 0.0%
!! ATATATATATATATATATAT+GGG + Chr5:11086502-11086483 None:intergenic 0.0%
!! ATATATATATATATATATAT+TGG + Chr5:11086502-11086483 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG + Chr5:11086503-11086484 None:intergenic 0.0%
!!! AAATGTTTTTTTTTTTTTAC+CGG + Chr5:11085601-11085620 None:intergenic 10.0%
!! TATAAGGTGAAAATAATTTA+TGG - Chr5:11086116-11086135 MsG0580024872.01.T01:intron 15.0%
!! TTGATAAAATAAAGTCAAAT+TGG - Chr5:11086035-11086054 MsG0580024872.01.T01:intron 15.0%
!!! TTGATATAGTTTATGATTTT+TGG - Chr5:11087849-11087868 MsG0580024872.01.T01:CDS 15.0%
!! AAAAAAAACCTCAAATTGTT+AGG + Chr5:11087548-11087567 None:intergenic 20.0%
!! AAAAGTGAATAATCACTATA+AGG + Chr5:11087076-11087095 None:intergenic 20.0%
!! AATTACCTACACTTTATAAA+AGG - Chr5:11087826-11087845 MsG0580024872.01.T01:CDS 20.0%
!! ATCTTAAATGGAAAAACTAA+TGG - Chr5:11087121-11087140 MsG0580024872.01.T01:intron 20.0%
!! GTAGATTAGAAACATATAAT+TGG + Chr5:11087169-11087188 None:intergenic 20.0%
!! TTGACAGAGTAAAATAATAA+TGG - Chr5:11087231-11087250 MsG0580024872.01.T01:intron 20.0%
!!! ATTAATTTTCCCTCAAAATA+AGG + Chr5:11087809-11087828 None:intergenic 20.0%
!!! TTTTTCTTATACTTCTATAC+TGG + Chr5:11086332-11086351 None:intergenic 20.0%
! ACATATGAACTTAAAAAACC+AGG + Chr5:11087195-11087214 None:intergenic 25.0%
! CATAAATCATGAGCAATAAA+CGG + Chr5:11086444-11086463 None:intergenic 25.0%
! TAATGATCTTTATCAAACAC+AGG - Chr5:11085706-11085725 MsG0580024872.01.T01:intron 25.0%
! TTTCTGTTGATATCTTTACT+TGG + Chr5:11085818-11085837 None:intergenic 25.0%
!! ATCAACCTTTTATAAAGTGT+AGG + Chr5:11087834-11087853 None:intergenic 25.0%
!! TCAAAATAAGGTATCAAAAG+AGG + Chr5:11087797-11087816 None:intergenic 25.0%
!!! AGTGATTATTCACTTTTGAA+GGG - Chr5:11087079-11087098 MsG0580024872.01.T01:intron 25.0%
!!! CTTTTGATACCTTATTTTGA+GGG - Chr5:11087797-11087816 MsG0580024872.01.T01:CDS 25.0%
!!! TAGTGATTATTCACTTTTGA+AGG - Chr5:11087078-11087097 MsG0580024872.01.T01:intron 25.0%
!!! TAGTGTTATCTTTTTCGTTA+TGG + Chr5:11085567-11085586 None:intergenic 25.0%
!!! TATCTTTTTCGTTATGGTTT+GGG + Chr5:11085561-11085580 None:intergenic 25.0%
!!! TCTTTTGATACCTTATTTTG+AGG - Chr5:11087796-11087815 MsG0580024872.01.T01:CDS 25.0%
!!! TTATCTTTTTCGTTATGGTT+TGG + Chr5:11085562-11085581 None:intergenic 25.0%
AAAAAAGGGTCTTTCTTTGA+AGG - Chr5:11087037-11087056 MsG0580024872.01.T01:intron 30.0%
AACCTCAAATTGTTAGGTAT+CGG + Chr5:11087542-11087561 None:intergenic 30.0%
ACACCTTCATAAAAGTAAGT+TGG - Chr5:11086597-11086616 MsG0580024872.01.T01:intron 30.0%
ATATCTTTACTTGGCAATTG+AGG + Chr5:11085809-11085828 None:intergenic 30.0%
CGTCTATCTTTAAATCCAAT+CGG - Chr5:11085427-11085446 MsG0580024872.01.T01:CDS 30.0%
CGTTTATTGCTCATGATTTA+TGG - Chr5:11086442-11086461 MsG0580024872.01.T01:intron 30.0%
CTCATGATTTATGGTTTAGT+GGG - Chr5:11086451-11086470 MsG0580024872.01.T01:intron 30.0%
CTGAAGGACTTATTGATATA+AGG - Chr5:11086100-11086119 MsG0580024872.01.T01:intron 30.0%
GAAGAAGATAAAATGCAGTT+GGG - Chr5:11087302-11087321 MsG0580024872.01.T01:intron 30.0%
GGAAAAACTAATGGTTTGAA+AGG - Chr5:11087130-11087149 MsG0580024872.01.T01:intron 30.0%
TCAAAAGATACGCTTAATCA+GGG - Chr5:11086978-11086997 MsG0580024872.01.T01:intron 30.0%
TCAAACACAGGAAATAAAAG+TGG - Chr5:11085718-11085737 MsG0580024872.01.T01:intron 30.0%
TGAAGAAGATAAAATGCAGT+TGG - Chr5:11087301-11087320 MsG0580024872.01.T01:intron 30.0%
TGAAGAGTGACAATCTTAAA+TGG - Chr5:11087109-11087128 MsG0580024872.01.T01:intron 30.0%
TTCAAAAGATACGCTTAATC+AGG - Chr5:11086977-11086996 MsG0580024872.01.T01:intron 30.0%
TTGCTTTCCTTGATAAAGAA+GGG - Chr5:11088007-11088026 MsG0580024872.01.T01:intron 30.0%
TTTGCTTTCCTTGATAAAGA+AGG - Chr5:11088006-11088025 MsG0580024872.01.T01:intron 30.0%
! AAGAAGATCTTGAACTTGTT+TGG - Chr5:11085955-11085974 MsG0580024872.01.T01:intron 30.0%
! ACCATTTTACTTCTCAAAAC+AGG - Chr5:11087896-11087915 MsG0580024872.01.T01:intron 30.0%
! CCAACTAATGTTCTAAATAG+GGG + Chr5:11087505-11087524 None:intergenic 30.0%
! CCCAACTAATGTTCTAAATA+GGG + Chr5:11087506-11087525 None:intergenic 30.0%
! CCCTATTTAGAACATTAGTT+GGG - Chr5:11087503-11087522 MsG0580024872.01.T01:intron 30.0%
! CTTGAACTTGTTTGGATTAA+CGG - Chr5:11085963-11085982 MsG0580024872.01.T01:intron 30.0%
! TGTTTCTGTCACTGAAAAAA+GGG - Chr5:11087023-11087042 MsG0580024872.01.T01:intron 30.0%
! TTCTGATAGTGTTTGTACTT+TGG - Chr5:11087625-11087644 MsG0580024872.01.T01:intron 30.0%
!! ACACCAACTTACTTTTATGA+AGG + Chr5:11086603-11086622 None:intergenic 30.0%
!! ACTTTTCGTATTTGCTAGAT+TGG - Chr5:11085871-11085890 MsG0580024872.01.T01:CDS 30.0%
!! GTATTTGCTAGATTGGATTT+TGG - Chr5:11085878-11085897 MsG0580024872.01.T01:CDS 30.0%
!! GTGATTATTCACTTTTGAAG+GGG - Chr5:11087080-11087099 MsG0580024872.01.T01:intron 30.0%
!! TAGTGTTTGTACTTTGGTTT+TGG - Chr5:11087631-11087650 MsG0580024872.01.T01:intron 30.0%
!! TATAGGGTGAATTTTTGAGA+AGG + Chr5:11085487-11085506 None:intergenic 30.0%
!!! TCCTGTTTTGAGAAGTAAAA+TGG + Chr5:11087900-11087919 None:intergenic 30.0%
AAAGTGAAAATCACACCTTG+AGG + Chr5:11086555-11086574 None:intergenic 35.0%
AACACAGGAAATAAAAGTGG+TGG - Chr5:11085721-11085740 MsG0580024872.01.T01:intron 35.0%
ACAACCTCAAATTGTTCTTC+AGG + Chr5:11087577-11087596 None:intergenic 35.0%
ACCTCAAATTGTTAGGTATC+GGG + Chr5:11087541-11087560 None:intergenic 35.0%
AGATTGGTGTGAAGTTTGTA+GGG - Chr5:11087711-11087730 MsG0580024872.01.T01:CDS 35.0%
AGGAAGACCATTAGAATCAA+CGG + Chr5:11085789-11085808 None:intergenic 35.0%
AGTTACGACCTTAGAAGATT+TGG + Chr5:11087386-11087405 None:intergenic 35.0%
ATCCATGTCCTTCATATAAC+TGG - Chr5:11087434-11087453 MsG0580024872.01.T01:intron 35.0%
ATGCATGGAATGATGAAAAG+AGG - Chr5:11087265-11087284 MsG0580024872.01.T01:intron 35.0%
ATGGAAAGAGTCATAATGCA+TGG - Chr5:11087250-11087269 MsG0580024872.01.T01:intron 35.0%
CTAAAAGACACCTTCACAAA+AGG - Chr5:11086652-11086671 MsG0580024872.01.T01:intron 35.0%
CTTCAAGATACCTGTTCATA+AGG + Chr5:11085938-11085957 None:intergenic 35.0%
CTTCATTCCCTTCTTTATCA+AGG + Chr5:11088017-11088036 None:intergenic 35.0%
GAACTTTGTGATGTTGAATG+TGG - Chr5:11087927-11087946 MsG0580024872.01.T01:intron 35.0%
GAGCTTATAACTGTTGAGTA+TGG + Chr5:11086946-11086965 None:intergenic 35.0%
GATAAAGAAGGGAATGAAGA+GGG - Chr5:11088018-11088037 MsG0580024872.01.T01:intron 35.0%
GCTCATGATTTATGGTTTAG+TGG - Chr5:11086450-11086469 MsG0580024872.01.T01:intron 35.0%
GTTACGACCTTAGAAGATTT+GGG + Chr5:11087385-11087404 None:intergenic 35.0%
TCAGATAACCTAATCCAAAC+AGG - Chr5:11086205-11086224 MsG0580024872.01.T01:intron 35.0%
TCTTCCTGAAGAACAATTTG+AGG - Chr5:11087570-11087589 MsG0580024872.01.T01:intron 35.0%
TGATAAAGAAGGGAATGAAG+AGG - Chr5:11088017-11088036 MsG0580024872.01.T01:intron 35.0%
TGCATGGAATGATGAAAAGA+GGG - Chr5:11087266-11087285 MsG0580024872.01.T01:intron 35.0%
TTAGAACATTAGTTGGGCTT+AGG - Chr5:11087509-11087528 MsG0580024872.01.T01:intron 35.0%
TTATCAAGGAAAGCAAAGTG+TGG + Chr5:11088003-11088022 None:intergenic 35.0%
TTTCAGTGACAGAAACAGTT+AGG + Chr5:11087020-11087039 None:intergenic 35.0%
TTTGAGAAGGTTGAAGATGA+AGG + Chr5:11085474-11085493 None:intergenic 35.0%
! AATGTTCTAAATAGGGGAGT+TGG + Chr5:11087499-11087518 None:intergenic 35.0%
! ATGTTTCTAATCTACTCACC+TGG - Chr5:11087174-11087193 MsG0580024872.01.T01:intron 35.0%
! CAATGCTTTGTGGTTAGTTA+GGG + Chr5:11087336-11087355 None:intergenic 35.0%
! CCCCTATTTAGAACATTAGT+TGG - Chr5:11087502-11087521 MsG0580024872.01.T01:intron 35.0%
! GCCCAACTAATGTTCTAAAT+AGG + Chr5:11087507-11087526 None:intergenic 35.0%
! GTTTTACTAAGCTGTTCTGA+AGG - Chr5:11086084-11086103 MsG0580024872.01.T01:intron 35.0%
! TCTTTGAAGGCGTGATTTAT+TGG - Chr5:11087050-11087069 MsG0580024872.01.T01:intron 35.0%
! TGCTCTATTTTGTAGACATC+AGG + Chr5:11087745-11087764 None:intergenic 35.0%
! TTTTGGATGTTTCTTGTTCC+AGG - Chr5:11087648-11087667 MsG0580024872.01.T01:intron 35.0%
!! CTGTTTCTGTCACTGAAAAA+AGG - Chr5:11087022-11087041 MsG0580024872.01.T01:intron 35.0%
!! TTTTCAAGCAAGTACTGTCT+TGG + Chr5:11088063-11088082 None:intergenic 35.0%
!!! AATTGTTAGGTATCGGGTTT+TGG + Chr5:11087535-11087554 None:intergenic 35.0%
!!! TTTTTTTACCGGTGTTGTTG+AGG + Chr5:11085590-11085609 None:intergenic 35.0%
AACAATTGGGCCAAACACAA+GGG - Chr5:11086841-11086860 MsG0580024872.01.T01:intron 40.0%
AAGATACGCTTAATCAGGGT+TGG - Chr5:11086982-11087001 MsG0580024872.01.T01:intron 40.0%
AAGGACATGGATAGCAATAG+AGG + Chr5:11087426-11087445 None:intergenic 40.0%
AATGAAGAGGGCAATGTAGT+AGG - Chr5:11088030-11088049 MsG0580024872.01.T01:CDS 40.0%
AATGAGCTGAAGACAGCTTA+TGG - Chr5:11086233-11086252 MsG0580024872.01.T01:intron 40.0%
ACAAGCACTAGTGCAATTGT+GGG + Chr5:11086171-11086190 None:intergenic 40.0%
ACATACACAGAAGAGAGGAA+AGG + Chr5:11086918-11086937 None:intergenic 40.0%
ACCCGATACCTAACAATTTG+AGG - Chr5:11087537-11087556 MsG0580024872.01.T01:intron 40.0%
AGAGAAAGTCATTCCTCTGA+AGG + Chr5:11087361-11087380 None:intergenic 40.0%
AGGACATGGATAGCAATAGA+GGG + Chr5:11087425-11087444 None:intergenic 40.0%
ATACACAGAAGAGAGGAAAG+GGG + Chr5:11086916-11086935 None:intergenic 40.0%
ATTCCCTGTGATACAGTTCA+GGG + Chr5:11086787-11086806 None:intergenic 40.0%
ATTGACAGCCTGTTTGGATT+AGG + Chr5:11086216-11086235 None:intergenic 40.0%
CAGATTGGTGTGAAGTTTGT+AGG - Chr5:11087710-11087729 MsG0580024872.01.T01:CDS 40.0%
CATACACAGAAGAGAGGAAA+GGG + Chr5:11086917-11086936 None:intergenic 40.0%
CTCATACATACACAGAAGAG+AGG + Chr5:11086923-11086942 None:intergenic 40.0%
GAATGTGGATAACACGAAGT+GGG - Chr5:11087942-11087961 MsG0580024872.01.T01:intron 40.0%
GCTTCTACTTTAGCAGCTTT+GGG - Chr5:11085848-11085867 MsG0580024872.01.T01:CDS 40.0%
GTTGTTGATCCAAGAAGTCA+TGG - Chr5:11088174-11088193 MsG0580024872.01.T01:CDS 40.0%
TAACACTACCTCAACAACAC+CGG - Chr5:11085579-11085598 MsG0580024872.01.T01:CDS 40.0%
TATTCCCTGTGATACAGTTC+AGG + Chr5:11086788-11086807 None:intergenic 40.0%
TGAATGTGGATAACACGAAG+TGG - Chr5:11087941-11087960 MsG0580024872.01.T01:intron 40.0%
TGCCAGTTATATGAAGGACA+TGG + Chr5:11087439-11087458 None:intergenic 40.0%
TGCTAAAAGACACCACCAAA+GGG + Chr5:11086525-11086544 None:intergenic 40.0%
TGCTTCTACTTTAGCAGCTT+TGG - Chr5:11085847-11085866 MsG0580024872.01.T01:intron 40.0%
TGTTGCATTGCCTTATGAAC+AGG - Chr5:11085925-11085944 MsG0580024872.01.T01:CDS 40.0%
TTCTCTGCCCAAATCTTCTA+AGG - Chr5:11087375-11087394 MsG0580024872.01.T01:intron 40.0%
TTGCTAAAAGACACCACCAA+AGG + Chr5:11086526-11086545 None:intergenic 40.0%
! CTAGAAGACACCTTTTGTGA+AGG + Chr5:11086665-11086684 None:intergenic 40.0%
! GCAATGCTTTGTGGTTAGTT+AGG + Chr5:11087337-11087356 None:intergenic 40.0%
! GTTATGGTTTGGGTCTGTTT+GGG + Chr5:11085551-11085570 None:intergenic 40.0%
! TGTTTGGCCCAATTGTTGTT+GGG + Chr5:11086838-11086857 None:intergenic 40.0%
! TTCTAGTGCTGAAGCAAGAA+AGG - Chr5:11088143-11088162 MsG0580024872.01.T01:CDS 40.0%
! TTTTAGCAAGTCACACCTCA+AGG - Chr5:11086537-11086556 MsG0580024872.01.T01:intron 40.0%
!! AGTTCAGCCGTTGATTCTAA+TGG - Chr5:11085779-11085798 MsG0580024872.01.T01:intron 40.0%
ATACCCCTGAACTGTATCAC+AGG - Chr5:11086780-11086799 MsG0580024872.01.T01:intron 45.0%
CAACAATTGGGCCAAACACA+AGG - Chr5:11086840-11086859 MsG0580024872.01.T01:intron 45.0%
CACAAGCACTAGTGCAATTG+TGG + Chr5:11086172-11086191 None:intergenic 45.0%
CGATCTTTGTTCACGCAGTT+CGG - Chr5:11086377-11086396 MsG0580024872.01.T01:intron 45.0%
CTACCTCTGCGACTATAGAA+CGG - Chr5:11086410-11086429 MsG0580024872.01.T01:intron 45.0%
GAAGGTTGAAGATGAAGGCA+TGG + Chr5:11085469-11085488 None:intergenic 45.0%
GGACATGGATAGCAATAGAG+GGG + Chr5:11087424-11087443 None:intergenic 45.0%
GGGGAATGCCAGTTATATGA+AGG + Chr5:11087445-11087464 None:intergenic 45.0%
GGTTTACTGCTACTAGTGCT+AGG + Chr5:11085752-11085771 None:intergenic 45.0%
GTGTTTGGCCCAATTGTTGT+TGG + Chr5:11086839-11086858 None:intergenic 45.0%
GTTGGTTACATTTGCTCACG+TGG + Chr5:11087481-11087500 None:intergenic 45.0%
TAAAAGACACCACCAAAGGG+TGG + Chr5:11086522-11086541 None:intergenic 45.0%
TACCCCTGAACTGTATCACA+GGG - Chr5:11086781-11086800 MsG0580024872.01.T01:intron 45.0%
TCGTGGAGTTCTATGCAGAT+TGG - Chr5:11087695-11087714 MsG0580024872.01.T01:CDS 45.0%
TCTGAAGGAGCAATGCTTTG+TGG + Chr5:11087346-11087365 None:intergenic 45.0%
TGGAATCTATGGAGACCGAT+TGG + Chr5:11085445-11085464 None:intergenic 45.0%
TGTTCCAGGCTCTTTCGAAT+GGG - Chr5:11087662-11087681 MsG0580024872.01.T01:intron 45.0%
TTCCCTGTGATACAGTTCAG+GGG + Chr5:11086786-11086805 None:intergenic 45.0%
TTGTTCCAGGCTCTTTCGAA+TGG - Chr5:11087661-11087680 MsG0580024872.01.T01:intron 45.0%
! CGTTATGGTTTGGGTCTGTT+TGG + Chr5:11085552-11085571 None:intergenic 45.0%
! GAAGGCATGGTTGGAATCTA+TGG + Chr5:11085456-11085475 None:intergenic 45.0%
! GTTGAAGATGAAGGCATGGT+TGG + Chr5:11085465-11085484 None:intergenic 45.0%
! GTTTGGCCCAATTGTTGTTG+GGG + Chr5:11086837-11086856 None:intergenic 45.0%
! TTTTGCTAGAAGCCACCCTT+TGG - Chr5:11086507-11086526 MsG0580024872.01.T01:intron 45.0%
!! ACAAAGCATTGCTCCTTCAG+AGG - Chr5:11087345-11087364 MsG0580024872.01.T01:intron 45.0%
!! ACGTGGCTAGTTTGTTAGAG+GGG + Chr5:11087464-11087483 None:intergenic 45.0%
!! CACGTGGCTAGTTTGTTAGA+GGG + Chr5:11087465-11087484 None:intergenic 45.0%
!! TCACGTGGCTAGTTTGTTAG+AGG + Chr5:11087466-11087485 None:intergenic 45.0%
!! TGCAATTGTGGGAGTGCTTA+TGG + Chr5:11086160-11086179 None:intergenic 45.0%
!! GTAAATAATAATAATAATAA+TGG + Chr5:11085624-11085643 None:intergenic 5.0%
AGGTGAGGAATCTGATGCGA+CGG + Chr5:11085522-11085541 None:intergenic 50.0%
ATCAACGGCTGAACTTGTCG+TGG + Chr5:11085774-11085793 None:intergenic 50.0%
CAGCTCATTGACAGCCTGTT+TGG + Chr5:11086222-11086241 None:intergenic 50.0%
CGTTCTATAGTCGCAGAGGT+AGG + Chr5:11086412-11086431 None:intergenic 50.0%
CTGTTTGGGAAGCTAAGGTG+AGG + Chr5:11085537-11085556 None:intergenic 50.0%
GAGCAAGAGCTTGACGAGTT+CGG - Chr5:11087964-11087983 MsG0580024872.01.T01:intron 50.0%
GCATAGAACTCCACGACAGT+AGG + Chr5:11087691-11087710 None:intergenic 50.0%
GCTTGCTCGTGGTGAAACAT+CGG - Chr5:11088092-11088111 MsG0580024872.01.T01:CDS 50.0%
TAGCCGTTCTATAGTCGCAG+AGG + Chr5:11086416-11086435 None:intergenic 50.0%
TCAACGGCTGAACTTGTCGT+GGG + Chr5:11085773-11085792 None:intergenic 50.0%
TCGCCACCCCAACAACAATT+GGG - Chr5:11086828-11086847 MsG0580024872.01.T01:intron 50.0%
TGGGTCTGTTTGGGAAGCTA+AGG + Chr5:11085542-11085561 None:intergenic 50.0%
!! CTTGACGAGTTCGGTGTTGA+GGG - Chr5:11087973-11087992 MsG0580024872.01.T01:intron 50.0%
AATGTAGACGCGCTTGCTCG+TGG - Chr5:11088081-11088100 MsG0580024872.01.T01:CDS 55.0%
ACGGTGGCGAGGAGGATATA+GGG + Chr5:11085503-11085522 None:intergenic 55.0%
ATTGGGCCAAACACAAGGGC+AGG - Chr5:11086845-11086864 MsG0580024872.01.T01:intron 55.0%
CACAGAAGAGAGGAAAGGGG+CGG + Chr5:11086913-11086932 None:intergenic 55.0%
GAATGGGAAGCCTACTGTCG+TGG - Chr5:11087678-11087697 MsG0580024872.01.T01:CDS 55.0%
GCTTCCCATTCGAAAGAGCC+TGG + Chr5:11087669-11087688 None:intergenic 55.0%
GTCGCCACCCCAACAACAAT+TGG - Chr5:11086827-11086846 MsG0580024872.01.T01:intron 55.0%
GTGCCTCATGCACGTGTTGT+GGG - Chr5:11088114-11088133 MsG0580024872.01.T01:CDS 55.0%
TGACCCACAACACGTGCATG+AGG + Chr5:11088120-11088139 None:intergenic 55.0%
TGAGGAATCTGATGCGACGG+TGG + Chr5:11085519-11085538 None:intergenic 55.0%
TGCTAGAAGCCACCCTTTGG+TGG - Chr5:11086510-11086529 MsG0580024872.01.T01:intron 55.0%
TGTTCACGCAGTTCGGTCAC+TGG - Chr5:11086384-11086403 MsG0580024872.01.T01:intron 55.0%
TTGGGCCAAACACAAGGGCA+GGG - Chr5:11086846-11086865 MsG0580024872.01.T01:intron 55.0%
! ATTGTTGTTGGGGTGGCGAC+TGG + Chr5:11086827-11086846 None:intergenic 55.0%
! TGGCCCAATTGTTGTTGGGG+TGG + Chr5:11086834-11086853 None:intergenic 55.0%
! TTGTTGTTGGGGTGGCGACT+GGG + Chr5:11086826-11086845 None:intergenic 55.0%
!! GCTTGACGAGTTCGGTGTTG+AGG - Chr5:11087972-11087991 MsG0580024872.01.T01:intron 55.0%
AAACACAAGGGCAGGGGTGG+TGG - Chr5:11086853-11086872 MsG0580024872.01.T01:intron 60.0%
AACACAAGGGCAGGGGTGGT+GGG - Chr5:11086854-11086873 MsG0580024872.01.T01:intron 60.0%
AATCTGATGCGACGGTGGCG+AGG + Chr5:11085514-11085533 None:intergenic 60.0%
ACCACCCCTGCCCTTGTGTT+TGG + Chr5:11086854-11086873 None:intergenic 60.0%
AGAGAGGAAAGGGGCGGAGA+AGG + Chr5:11086907-11086926 None:intergenic 60.0%
GACGGTGGCGAGGAGGATAT+AGG + Chr5:11085504-11085523 None:intergenic 60.0%
GGTGCCTCATGCACGTGTTG+TGG - Chr5:11088113-11088132 MsG0580024872.01.T01:CDS 60.0%
TGGGCCAAACACAAGGGCAG+GGG - Chr5:11086847-11086866 MsG0580024872.01.T01:intron 60.0%
TGTTGTTGGGGTGGCGACTG+GGG + Chr5:11086825-11086844 None:intergenic 60.0%
GCCAAACACAAGGGCAGGGG+TGG - Chr5:11086850-11086869 MsG0580024872.01.T01:intron 65.0%
GTTGTTGGGGTGGCGACTGG+GGG + Chr5:11086824-11086843 None:intergenic 65.0%
TTGTTGGGGTGGCGACTGGG+GGG + Chr5:11086823-11086842 None:intergenic 65.0%
CTGATGCGACGGTGGCGAGG+AGG + Chr5:11085511-11085530 None:intergenic 70.0%
! GGTGGCGACTGGGGGGTGCA+GGG + Chr5:11086816-11086835 None:intergenic 75.0%
! GTGGCGACTGGGGGGTGCAG+GGG + Chr5:11086815-11086834 None:intergenic 75.0%
! TGGCGACTGGGGGGTGCAGG+GGG + Chr5:11086814-11086833 None:intergenic 75.0%
!! GGGTGGCGACTGGGGGGTGC+AGG + Chr5:11086817-11086836 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr5 gene 11085421 11088200 11085421 ID=MsG0580024872.01;Name=MsG0580024872.01
Chr5 mRNA 11085421 11088200 11085421 ID=MsG0580024872.01.T01;Parent=MsG0580024872.01;Name=MsG0580024872.01.T01;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|1|1|4|0|261
Chr5 exon 11088021 11088200 11088021 ID=MsG0580024872.01.T01:exon:3092;Parent=MsG0580024872.01.T01
Chr5 exon 11087675 11087893 11087675 ID=MsG0580024872.01.T01:exon:3091;Parent=MsG0580024872.01.T01
Chr5 exon 11085848 11085951 11085848 ID=MsG0580024872.01.T01:exon:3090;Parent=MsG0580024872.01.T01
Chr5 exon 11085421 11085703 11085421 ID=MsG0580024872.01.T01:exon:3089;Parent=MsG0580024872.01.T01
Chr5 CDS 11088021 11088200 11088021 ID=MsG0580024872.01.T01:cds;Parent=MsG0580024872.01.T01
Chr5 CDS 11087675 11087893 11087675 ID=MsG0580024872.01.T01:cds;Parent=MsG0580024872.01.T01
Chr5 CDS 11085848 11085951 11085848 ID=MsG0580024872.01.T01:cds;Parent=MsG0580024872.01.T01
Chr5 CDS 11085421 11085703 11085421 ID=MsG0580024872.01.T01:cds;Parent=MsG0580024872.01.T01
Gene Sequence

>MsG0580024872.01.T01

ATGGCTCGTCTATCTTTAAATCCAATCGGTCTCCATAGATTCCAACCATGCCTTCATCTTCAACCTTCTCAAAAATTCACCCTATATCCTCCTCGCCACCGTCGCATCAGATTCCTCACCTTAGCTTCCCAAACAGACCCAAACCATAACGAAAAAGATAACACTACCTCAACAACACCGGAAATAAAAGTGGTGGTTGAGCCTAGCACTAGTAGCAGTAAACCCACGACAAGTTCAGCCGTTGATTCTAATGGTCTTCCTCAATTGCCAAGTAAAGATATCAACAGAAAAATCGCTATTGCTTCTACTTTAGCAGCTTTGGGACTTTTCGTATTTGCTAGATTGGATTTTGGTGTTTCTTTGAAAGATCTCTCTGCTGTTGCATTGCCTTATGAACAGGCTCTTTCGAATGGGAAGCCTACTGTCGTGGAGTTCTATGCAGATTGGTGTGAAGTTTGTAGGGAATTAGCTCCTGATGTCTACAAAATAGAGCAGCAATACAAGAATAAAGTGAACTTTGTGATGTTGAATGTGGATAACACGAAGTGGGAGCAAGAGCTTGACGAGTTCGGTGTTGAGGGTATTCCACACTTTGCTTTCCTTGATAAAGAAGGGAATGAAGAGGGCAATGTAGTAGGTAGACTTCCAAGACAGTACTTGCTTGAAAATGTAGACGCGCTTGCTCGTGGTGAAACATCGGTGCCTCATGCACGTGTTGTGGGTCAATATTCTAGTGCTGAAGCAAGAAAGGTGCATCAAGTTGTTGATCCAAGAAGTCATGGTTAG

Protein sequence

>MsG0580024872.01.T01

MARLSLNPIGLHRFQPCLHLQPSQKFTLYPPRHRRIRFLTLASQTDPNHNEKDNTTSTTPEIKVVVEPSTSSSKPTTSSAVDSNGLPQLPSKDINRKIAIASTLAALGLFVFARLDFGVSLKDLSAVALPYEQALSNGKPTVVEFYADWCEVCRELAPDVYKIEQQYKNKVNFVMLNVDNTKWEQELDEFGVEGIPHFAFLDKEGNEEGNVVGRLPRQYLLENVDALARGETSVPHARVVGQYSSAEARKVHQVVDPRSHG*