AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680032517.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032517.01.T01 MTR_6g086510 89.655 145 8 1 1 138 222 366 5.99e-91 269
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680032517.01.T01 AT5G19460 65.455 165 41 2 1 149 210 374 2.46e-69 214
MsG0680032517.01.T01 AT5G19470 66.216 148 43 1 1 141 201 348 2.53e-64 201
MsG0680032517.01.T01 AT5G19470 66.207 145 42 1 1 138 201 345 7.58e-63 197

Find 89 sgRNAs with CRISPR-Local

Find 387 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGCTGCAGCTCCTTATTT+TGG 0.177594 6:+43574990 MsG0680032517.01.T01:five_prime_UTR
GGTTGCAAAGTTTGACTTTA+TGG 0.196450 6:-43570885 None:intergenic
CTCTTTGAAGCATAGGCTTA+TGG 0.222290 6:+43575373 MsG0680032517.01.T01:intron
ATTTCTGCAACTTGCTTAAC+AGG 0.232793 6:-43576415 None:intergenic
TGTACCTTTATGCCAAAATA+AGG 0.246886 6:-43575002 None:intergenic
TGTTGGTGCTGTTTCATATA+TGG 0.322857 6:+43576180 MsG0680032517.01.T01:CDS
TGGCTATGTAATCGAGCATT+TGG 0.324074 6:+43574781 MsG0680032517.01.T01:five_prime_UTR
CCCAATGATGGAAGCCCCTT+TGG 0.334011 6:+43574701 MsG0680032517.01.T01:five_prime_UTR
ATGATCACGACAGCACAATT+TGG 0.337212 6:-43576463 None:intergenic
TTGGGAGAGGAGCATATTCC+AGG 0.372454 6:+43574800 MsG0680032517.01.T01:five_prime_UTR
AGAAGAAGAGAAGGGTTTGT+AGG 0.384314 6:-43570658 None:intergenic
GTTTGTCAAATGAGGACTTC+AGG 0.385114 6:-43574948 None:intergenic
AGAAAGGTGAGAGGGTTTGA+AGG 0.388040 6:-43570703 None:intergenic
ACCAAAGGGGCTTCCATCAT+TGG 0.391806 6:-43574702 None:intergenic
ATGCTTGATCATCTAGTTGC+AGG 0.394775 6:+43575484 MsG0680032517.01.T01:CDS
AGAAATACCCGTGTCGAAAC+AGG 0.401405 6:-43576492 None:intergenic
AGTGGCTATGTTGAGATAGA+TGG 0.405918 6:+43575406 MsG0680032517.01.T01:CDS
CATGTTTCTCAATCTGAAGT+TGG 0.408924 6:+43570821 MsG0680032517.01.T01:five_prime_UTR
GTCATTGAGGGCGACGTTGT+TGG 0.409677 6:+43574517 MsG0680032517.01.T01:five_prime_UTR
GGGAAGAGTGTGGTTGTTGA+TGG 0.411141 6:-43570738 None:intergenic
TCCTCAGCTGTCTTCAGCAA+TGG 0.422425 6:-43574743 None:intergenic
GAAGGGTTTGTAGGAGAAGA+AGG 0.433689 6:-43570649 None:intergenic
GGCTATGTAATCGAGCATTT+GGG 0.440338 6:+43574782 MsG0680032517.01.T01:five_prime_UTR
AGGAGCATATTCCAGGTATA+CGG 0.452411 6:+43574807 MsG0680032517.01.T01:five_prime_UTR
CACACGAAATCCACATATCC+TGG 0.461613 6:+43575460 MsG0680032517.01.T01:CDS
TTTCTTCCATTTGTCATTGA+GGG 0.468948 6:+43574505 MsG0680032517.01.T01:five_prime_UTR
TCTCAACATAGCCACTCATA+TGG 0.469522 6:-43575399 None:intergenic
AGGTTTGTTGAGCATTTAAG+AGG 0.470542 6:+43574657 MsG0680032517.01.T01:intron
CCAAAGGGGCTTCCATCATT+GGG 0.472746 6:-43574701 None:intergenic
AAGGAATGTGAAGAGGAAGC+AGG 0.475425 6:+43575774 MsG0680032517.01.T01:CDS
TCATCTAGTTGCAGGAGGAC+TGG 0.475914 6:+43575492 MsG0680032517.01.T01:CDS
ACTAGATGATCAAGCATTCC+AGG 0.480283 6:-43575478 None:intergenic
TGATGGAGAGAAAGGTGAGA+GGG 0.487180 6:-43570711 None:intergenic
ACGTCGCCCTCAATGACAAA+TGG 0.490482 6:-43574511 None:intergenic
AATGAAACACAGTGACCAAA+GGG 0.500047 6:-43574716 None:intergenic
TTTCATATATGGACATCGAC+GGG 0.501956 6:+43576191 MsG0680032517.01.T01:CDS
ATTTCTTCCATTTGTCATTG+AGG 0.503126 6:+43574504 MsG0680032517.01.T01:five_prime_UTR
TAGATGGGCAGAAGCACCTA+TGG 0.503368 6:+43575422 MsG0680032517.01.T01:CDS
TTGTTGGATTCATTCACAAT+CGG 0.508086 6:+43574533 MsG0680032517.01.T01:five_prime_UTR
AATACCTCGTTCCGTATACC+TGG 0.509788 6:-43574818 None:intergenic
TTTGTCAAATGAGGACTTCA+GGG 0.510511 6:-43574947 None:intergenic
ATATATGAAACAGCACCAAC+AGG 0.512369 6:-43576178 None:intergenic
TTGTCAGGAAAATGTTGTAA+AGG 0.514029 6:+43575755 MsG0680032517.01.T01:intron
TCGACGGGGATAGATACAAA+AGG 0.523200 6:+43576206 MsG0680032517.01.T01:CDS
ATCAAGCATTCCAGGATATG+TGG 0.524432 6:-43575470 None:intergenic
ACTGGTGGCTGAAGAAGAAA+AGG 0.525903 6:-43570762 None:intergenic
CCGAACTTACTTAATAGAGA+TGG 0.527571 6:-43575808 None:intergenic
ATGGAAGATGATGGAGAGAA+AGG 0.528336 6:-43570719 None:intergenic
GAGTGTGCACGTGCTGCCAC+TGG 0.531569 6:-43570780 None:intergenic
TTGACTTCCTGTTTCGACAC+GGG 0.535466 6:+43576485 MsG0680032517.01.T01:CDS
AAGAAAAGGAGGGAAGAGTG+TGG 0.538836 6:-43570748 None:intergenic
ACGTTCTAATGAAAAGAAAA+CGG 0.541565 6:-43574970 None:intergenic
GCAGCACGTGCACACTCACA+TGG 0.546676 6:+43570786 MsG0680032517.01.T01:five_prime_UTR
ATGATGGAGAGAAAGGTGAG+AGG 0.552632 6:-43570712 None:intergenic
AGAAAACGGTTTGTCAAATG+AGG 0.558294 6:-43574956 None:intergenic
GATCCTTGTTCTTATCTACA+AGG 0.560656 6:+43570857 MsG0680032517.01.T01:five_prime_UTR
TACTTAATAGAGATGGACCT+GGG 0.564877 6:-43575801 None:intergenic
GATTACATAGCCAAGCGCGC+TGG 0.567603 6:-43574771 None:intergenic
TGTGCACGTGCTGCCACTGG+TGG 0.568995 6:-43570777 None:intergenic
TTGCTTGTAGGACAAACAAT+CGG 0.569942 6:+43574480 MsG0680032517.01.T01:intron
TCTTGCAGAGCTAAACCTGT+TGG 0.576211 6:+43576163 MsG0680032517.01.T01:intron
AAGAGGAAGCAGGAATCCCC+AGG 0.577108 6:+43575784 MsG0680032517.01.T01:CDS
CGACGGGGATAGATACAAAA+GGG 0.578922 6:+43576207 MsG0680032517.01.T01:CDS
CAATGAAACACAGTGACCAA+AGG 0.586554 6:-43574717 None:intergenic
GACTTCTCTTCGCTATCCAT+AGG 0.590285 6:-43575438 None:intergenic
AAAGTCAAACTTTGCAACCG+TGG 0.591041 6:+43570889 MsG0680032517.01.T01:five_prime_UTR
TTTCTGCAACTTGCTTAACA+GGG 0.595814 6:-43576414 None:intergenic
TGTAATCGAGCATTTGGGAG+AGG 0.600564 6:+43574787 MsG0680032517.01.T01:five_prime_UTR
TTCTCAGTGGTGTTAAAGAA+CGG 0.603302 6:+43576581 MsG0680032517.01.T01:CDS
TGTTGTAAAGGAATGTGAAG+AGG 0.609830 6:+43575767 MsG0680032517.01.T01:CDS
GTTTCATATATGGACATCGA+CGG 0.610300 6:+43576190 MsG0680032517.01.T01:CDS
ATTGACTTCCTGTTTCGACA+CGG 0.610821 6:+43576484 MsG0680032517.01.T01:CDS
GTGGCTATGTTGAGATAGAT+GGG 0.621537 6:+43575407 MsG0680032517.01.T01:CDS
TGGTTGTTGATGGAAGATGA+TGG 0.632740 6:-43570728 None:intergenic
GGTGGCTGAAGAAGAAAAGG+AGG 0.638422 6:-43570759 None:intergenic
TTGAGCCATGTGCTTCTCAG+TGG 0.641609 6:+43576568 MsG0680032517.01.T01:intron
GCTTATGGAGTCCATATGAG+TGG 0.651417 6:+43575388 MsG0680032517.01.T01:exon
TTACTTAATAGAGATGGACC+TGG 0.657192 6:-43575802 None:intergenic
CTTGATCATCTAGTTGCAGG+AGG 0.661487 6:+43575487 MsG0680032517.01.T01:CDS
TCCATTGCTGAAGACAGCTG+AGG 0.673124 6:+43574742 MsG0680032517.01.T01:five_prime_UTR
CAGCACGTGCACACTCACAT+GGG 0.680877 6:+43570787 MsG0680032517.01.T01:five_prime_UTR
TAACACCACTGAGAAGCACA+TGG 0.688100 6:-43576573 None:intergenic
GTACCTTGTAGATAAGAACA+AGG 0.699643 6:-43570860 None:intergenic
GTGGCTGAAGAAGAAAAGGA+GGG 0.700450 6:-43570758 None:intergenic
TTCATATATGGACATCGACG+GGG 0.710863 6:+43576192 MsG0680032517.01.T01:CDS
ACTTAATAGAGATGGACCTG+GGG 0.711401 6:-43575800 None:intergenic
TATTCCAGGTATACGGAACG+AGG 0.728323 6:+43574814 MsG0680032517.01.T01:five_prime_UTR
GTAAAGAACTCACAGAACCA+CGG 0.729302 6:-43570906 None:intergenic
ATGAAACACAGTGACCAAAG+GGG 0.740460 6:-43574715 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAATCTTTATAATCAAT+TGG + Chr6:43571853-43571872 MsG0680032517.01.T01:intron 10.0%
!!! TTTTTTTTATCAATTTATGT+TGG + Chr6:43571511-43571530 MsG0680032517.01.T01:intron 10.0%
!! TACATACTATAAATTTAGTT+TGG - Chr6:43575054-43575073 None:intergenic 15.0%
!! TATTTCAACTCAATTTATAT+AGG + Chr6:43572520-43572539 MsG0680032517.01.T01:intron 15.0%
!!! ACTTTTCATTAAGATTTTTT+TGG + Chr6:43574370-43574389 MsG0680032517.01.T01:intron 15.0%
!!! ATTTTAAGTTATTAACTGTA+AGG + Chr6:43572153-43572172 MsG0680032517.01.T01:intron 15.0%
!!! TATCATTAGTTTTGAAATTT+GGG + Chr6:43571876-43571895 MsG0680032517.01.T01:intron 15.0%
!!! TGATTTTATAAAGTTGATTT+TGG + Chr6:43571413-43571432 MsG0680032517.01.T01:intron 15.0%
!! AAACACATATTTCATAAGTA+GGG - Chr6:43576550-43576569 None:intergenic 20.0%
!! AACAAATTACAATAACCAAA+AGG - Chr6:43572033-43572052 None:intergenic 20.0%
!! AACAAGACAATCTATTTAAA+AGG - Chr6:43574450-43574469 None:intergenic 20.0%
!! AAGGATGAAATTAATATCAA+CGG + Chr6:43575636-43575655 MsG0680032517.01.T01:intron 20.0%
!! AATGTAAAGTTGTTTATGTT+TGG + Chr6:43571001-43571020 MsG0680032517.01.T01:intron 20.0%
!! AATTCATATTATCCAAAGTT+TGG - Chr6:43571703-43571722 None:intergenic 20.0%
!! ACTTTACATTCAAATCAATT+CGG - Chr6:43570991-43571010 None:intergenic 20.0%
!! ACTTTATCTTCAAATCAATT+CGG - Chr6:43571624-43571643 None:intergenic 20.0%
!! ATTCTAAACTTGATTCAAAA+TGG - Chr6:43574256-43574275 None:intergenic 20.0%
!! GTTATTCATGAATATTTCTT+TGG + Chr6:43574615-43574634 MsG0680032517.01.T01:intron 20.0%
!! GTTGTGAGTTTAATAATATA+GGG - Chr6:43571968-43571987 None:intergenic 20.0%
!! TAAGATTGGATTTAATTGAT+TGG + Chr6:43573802-43573821 MsG0680032517.01.T01:intron 20.0%
!! TACTTTATTGAAAAAAGAAG+TGG - Chr6:43571835-43571854 None:intergenic 20.0%
!! TAGAAAATTTAGAGAGAAAA+TGG + Chr6:43573409-43573428 MsG0680032517.01.T01:intron 20.0%
!! TATAAGGAAAAATGAAGAAA+GGG - Chr6:43574570-43574589 None:intergenic 20.0%
!! TGGATATATTGAACTAAAAT+TGG + Chr6:43571210-43571229 MsG0680032517.01.T01:intron 20.0%
!! TGTTGTGAGTTTAATAATAT+AGG - Chr6:43571969-43571988 None:intergenic 20.0%
!! TTATAAGGAAAAATGAAGAA+AGG - Chr6:43574571-43574590 None:intergenic 20.0%
!! TTATATAGCTGCTAAAAAAA+AGG - Chr6:43575156-43575175 None:intergenic 20.0%
!! TTGTGAGTTTAATAATATAG+GGG - Chr6:43571967-43571986 None:intergenic 20.0%
!! TTGTTACATTAAATAACAGA+TGG + Chr6:43576367-43576386 MsG0680032517.01.T01:intron 20.0%
!!! ACGAAAAAAGTGATTTTTAT+GGG + Chr6:43571663-43571682 MsG0680032517.01.T01:intron 20.0%
!!! AGTGTTAATATTTTGATGTT+GGG + Chr6:43574029-43574048 MsG0680032517.01.T01:intron 20.0%
!!! ATTAACCTCTAATAGATTTT+TGG + Chr6:43574274-43574293 MsG0680032517.01.T01:intron 20.0%
!!! GTATCATTAGTTTTGAAATT+TGG + Chr6:43571875-43571894 MsG0680032517.01.T01:intron 20.0%
!!! GTGATTTTTATCAATTTGTT+TGG + Chr6:43571041-43571060 MsG0680032517.01.T01:intron 20.0%
!!! TACGAAAAAAGTGATTTTTA+TGG + Chr6:43571662-43571681 MsG0680032517.01.T01:intron 20.0%
!!! TACTCGTATTTAATTTCATA+AGG + Chr6:43572770-43572789 MsG0680032517.01.T01:intron 20.0%
!!! TAGTGTTAATATTTTGATGT+TGG + Chr6:43574028-43574047 MsG0680032517.01.T01:intron 20.0%
!!! TGATTTTATCAATTTCTGTT+TGG + Chr6:43571190-43571209 MsG0680032517.01.T01:intron 20.0%
!!! TTTAATTTCATAAGGAAGTT+AGG + Chr6:43572778-43572797 MsG0680032517.01.T01:intron 20.0%
!!! TTTGGTTATTGTAATTTGTT+GGG + Chr6:43572033-43572052 MsG0680032517.01.T01:intron 20.0%
!!! TTTTCAAATACTTAAAGTCA+TGG - Chr6:43574310-43574329 None:intergenic 20.0%
!!! TTTTGGTTATTGTAATTTGT+TGG + Chr6:43572032-43572051 MsG0680032517.01.T01:intron 20.0%
! AAAAAAAGTAGGACATTAGA+TGG + Chr6:43572270-43572289 MsG0680032517.01.T01:intron 25.0%
! AAAGTTCAACTTTGTAATTG+TGG + Chr6:43571308-43571327 MsG0680032517.01.T01:intron 25.0%
! AAGAAATGTTTAACATGTCA+AGG - Chr6:43575565-43575584 None:intergenic 25.0%
! AAGTTATTAACTGTAAGGTT+AGG + Chr6:43572158-43572177 MsG0680032517.01.T01:intron 25.0%
! AATGTAACAAGTTACTACAA+AGG - Chr6:43576357-43576376 None:intergenic 25.0%
! AATTGATATTTCAGGCATAT+TGG - Chr6:43572614-43572633 None:intergenic 25.0%
! AATTGGAGAATGAGTTTAAA+AGG - Chr6:43576295-43576314 None:intergenic 25.0%
! ACAATGATCACTGATAAAAT+AGG + Chr6:43571986-43572005 MsG0680032517.01.T01:intron 25.0%
! ACGTTCTAATGAAAAGAAAA+CGG - Chr6:43574973-43574992 None:intergenic 25.0%
! AGAAATGTTTAACATGTCAA+GGG - Chr6:43575564-43575583 None:intergenic 25.0%
! AGATATTATTAAGACACTCT+CGG - Chr6:43573267-43573286 None:intergenic 25.0%
! AGGAGTTATTTATCATTTGA+TGG + Chr6:43574003-43574022 MsG0680032517.01.T01:intron 25.0%
! ATTCTCAGTCAATAAAGAAA+AGG - Chr6:43571765-43571784 None:intergenic 25.0%
! ATTGGATTTAATTGATTGGA+CGG + Chr6:43573806-43573825 MsG0680032517.01.T01:intron 25.0%
! ATTGTCCAAAAATCTATTAG+AGG - Chr6:43574282-43574301 None:intergenic 25.0%
! CAAACACATATTTCATAAGT+AGG - Chr6:43576551-43576570 None:intergenic 25.0%
! GATTTATGACATTGTATGTT+TGG + Chr6:43571459-43571478 MsG0680032517.01.T01:intron 25.0%
! GCTACTTATATGCTAAATTA+AGG - Chr6:43572406-43572425 None:intergenic 25.0%
! GTTAATGTGAATGATGTTAA+GGG - Chr6:43574234-43574253 None:intergenic 25.0%
! TGAAATTAATATCAACGGAT+TGG + Chr6:43575641-43575660 MsG0680032517.01.T01:intron 25.0%
! TGCTATTAAGTGTTTCTTTA+GGG + Chr6:43575671-43575690 MsG0680032517.01.T01:intron 25.0%
! TGTGTGTGTGTAATAAATTT+GGG + Chr6:43571238-43571257 MsG0680032517.01.T01:intron 25.0%
! TTCTCAGTCAATAAAGAAAA+GGG - Chr6:43571764-43571783 None:intergenic 25.0%
!! AATCAAATTTTGTGCACTAA+AGG - Chr6:43575860-43575879 None:intergenic 25.0%
!! ATGTCTATAATCTAAAGTGT+CGG - Chr6:43575918-43575937 None:intergenic 25.0%
!! GATTTTTATGGGTTTATGTT+TGG + Chr6:43571674-43571693 MsG0680032517.01.T01:intron 25.0%
!! TTGCTATTAAGTGTTTCTTT+AGG + Chr6:43575670-43575689 MsG0680032517.01.T01:intron 25.0%
!!! ACTATTTTGACTGAGTAATT+CGG - Chr6:43573081-43573100 None:intergenic 25.0%
!!! ATCTAATGTCCTACTTTTTT+TGG - Chr6:43572271-43572290 None:intergenic 25.0%
!!! GAATTGATTTGAAGATAAAG+TGG + Chr6:43571623-43571642 MsG0680032517.01.T01:intron 25.0%
!!! GTGTTAATATTTTGATGTTG+GGG + Chr6:43574030-43574049 MsG0680032517.01.T01:intron 25.0%
!!! GTTAAACTTTGAAATTGTTC+AGG + Chr6:43574637-43574656 MsG0680032517.01.T01:intron 25.0%
!!! TAGAAATATTAGCTTTTAGC+TGG + Chr6:43571105-43571124 MsG0680032517.01.T01:intron 25.0%
!!! TATGGATTCTAGTTTTTGAT+GGG + Chr6:43572807-43572826 MsG0680032517.01.T01:intron 25.0%
!!! TCTAATGTCCTACTTTTTTT+GGG - Chr6:43572270-43572289 None:intergenic 25.0%
!!! TTTTCTTTATTGACTGAGAA+TGG + Chr6:43571764-43571783 MsG0680032517.01.T01:intron 25.0%
AAAACACAGACAAGAAATGT+AGG - Chr6:43574917-43574936 None:intergenic 30.0%
AAAATTAACTTTACACCTGC+AGG - Chr6:43574427-43574446 None:intergenic 30.0%
AAGAAATGTATGAAATGACG+TGG - Chr6:43576526-43576545 None:intergenic 30.0%
AATAGAAGACATGTAATGAG+AGG - Chr6:43575236-43575255 None:intergenic 30.0%
ACACAAAAGAGAGGTAATTA+AGG - Chr6:43570931-43570950 None:intergenic 30.0%
ACATTGAGCTTTCATTCTAT+CGG + Chr6:43572315-43572334 MsG0680032517.01.T01:intron 30.0%
AGAAGGAGATTGTTTAAATG+AGG + Chr6:43572961-43572980 MsG0680032517.01.T01:intron 30.0%
AGCAAATGGTTGGATATTTA+TGG - Chr6:43576105-43576124 None:intergenic 30.0%
ATTTCTTCCATTTGTCATTG+AGG + Chr6:43574504-43574523 MsG0680032517.01.T01:five_prime_UTR 30.0%
ATTTGATCGTTAAAATGGCT+CGG + Chr6:43573319-43573338 MsG0680032517.01.T01:intron 30.0%
CATTCAATGAAAGAGAATGA+TGG - Chr6:43574874-43574893 None:intergenic 30.0%
CCATCTCTATTAAGTAAGTT+CGG + Chr6:43575808-43575827 MsG0680032517.01.T01:intron 30.0%
CTAAAAAAAAGGTCTGAACT+TGG - Chr6:43575145-43575164 None:intergenic 30.0%
CTGCTAAATTGTTTCATGAA+AGG - Chr6:43572853-43572872 None:intergenic 30.0%
GATATTATTAAGACACTCTC+GGG - Chr6:43573266-43573285 None:intergenic 30.0%
GCAGTTTAATATCTTGTGAA+TGG + Chr6:43573383-43573402 MsG0680032517.01.T01:intron 30.0%
GGGAAAGTAATTGATATTTC+AGG - Chr6:43572622-43572641 None:intergenic 30.0%
GGGTAATATGTATTATCATC+CGG + Chr6:43575691-43575710 MsG0680032517.01.T01:intron 30.0%
GGTTAATGTGAATGATGTTA+AGG - Chr6:43574235-43574254 None:intergenic 30.0%
GTCGCTAAATAAAGACATTT+CGG + Chr6:43572885-43572904 MsG0680032517.01.T01:intron 30.0%
GTGTGTGTGTGTAATAAATT+TGG + Chr6:43571237-43571256 MsG0680032517.01.T01:intron 30.0%
GTTATGCGAAAATTCACATT+GGG - Chr6:43571813-43571832 None:intergenic 30.0%
TAAAATCTAAACCCAAATGC+TGG - Chr6:43572463-43572482 None:intergenic 30.0%
TATGACACAAGCATCTTATA+AGG - Chr6:43574586-43574605 None:intergenic 30.0%
TATGGTTACATTGAAAACGA+AGG + Chr6:43573164-43573183 MsG0680032517.01.T01:intron 30.0%
TCACAAAAGAGAGGTAATTA+CGG - Chr6:43571356-43571375 None:intergenic 30.0%
TCTCAAATTAACACCAATGT+CGG + Chr6:43575992-43576011 MsG0680032517.01.T01:intron 30.0%
TGAAGATAAAGTGGTATCTT+TGG + Chr6:43571632-43571651 MsG0680032517.01.T01:intron 30.0%
TGTACCTTTATGCCAAAATA+AGG - Chr6:43575005-43575024 None:intergenic 30.0%
TGTGGATTTGATCGTTAAAA+TGG + Chr6:43573314-43573333 MsG0680032517.01.T01:intron 30.0%
TTGATTTCGAAATTGCTTGT+AGG + Chr6:43574468-43574487 MsG0680032517.01.T01:intron 30.0%
TTGGATTTAATTGATTGGAC+GGG + Chr6:43573807-43573826 MsG0680032517.01.T01:intron 30.0%
TTGTATCCTAAAGCTCTTAT+CGG + Chr6:43575320-43575339 MsG0680032517.01.T01:intron 30.0%
TTGTCAGGAAAATGTTGTAA+AGG + Chr6:43575755-43575774 MsG0680032517.01.T01:intron 30.0%
TTGTTGGATTCATTCACAAT+CGG + Chr6:43574533-43574552 MsG0680032517.01.T01:five_prime_UTR 30.0%
TTTCTTCCATTTGTCATTGA+GGG + Chr6:43574505-43574524 MsG0680032517.01.T01:five_prime_UTR 30.0%
! ACATCGTATAGTTTTCTTGT+CGG + Chr6:43573705-43573724 MsG0680032517.01.T01:intron 30.0%
! ATAGATTGTGTTATTGAGTC+TGG + Chr6:43572092-43572111 MsG0680032517.01.T01:intron 30.0%
! GCATGTGATTTTCATCATTT+TGG - Chr6:43570616-43570635 None:intergenic 30.0%
! GGATTTTTCATTTCAGCAAA+TGG - Chr6:43576119-43576138 None:intergenic 30.0%
! TAAAGTGCAATTAAGCCTTT+TGG + Chr6:43572015-43572034 MsG0680032517.01.T01:intron 30.0%
! TATGTTTGGAATCCAAACTT+TGG + Chr6:43571688-43571707 MsG0680032517.01.T01:intron 30.0%
! TTTTCATTTCAGCAAATGGT+TGG - Chr6:43576115-43576134 None:intergenic 30.0%
!! CTTTATTCTCTTTGAAGCAT+AGG + Chr6:43575366-43575385 MsG0680032517.01.T01:intron 30.0%
!! GCTAGTTATTTCCCTTTTAA+CGG + Chr6:43572350-43572369 MsG0680032517.01.T01:intron 30.0%
!!! AGTTTATTGCCCCATTTTTT+CGG + Chr6:43573288-43573307 MsG0680032517.01.T01:intron 30.0%
!!! CTATTTTGACTGAGTAATTC+GGG - Chr6:43573080-43573099 None:intergenic 30.0%
!!! GAAATTGGTTTTGTTTAGGA+TGG + Chr6:43574052-43574071 MsG0680032517.01.T01:intron 30.0%
!!! GTATGGATTCTAGTTTTTGA+TGG + Chr6:43572806-43572825 MsG0680032517.01.T01:intron 30.0%
!!! GTCTCTTAATTTTGAAGTGA+AGG + Chr6:43571898-43571917 MsG0680032517.01.T01:intron 30.0%
!!! GTTACTCTTTTTTTGCTGAT+GGG + Chr6:43573855-43573874 MsG0680032517.01.T01:intron 30.0%
!!! TATTAGCTTTTGTATGCGTT+TGG + Chr6:43571571-43571590 MsG0680032517.01.T01:intron 30.0%
!!! TATTTTGATGTTGGGGAAAT+TGG + Chr6:43574037-43574056 MsG0680032517.01.T01:intron 30.0%
!!! TTACTGTTTTTGTCTGTCTT+GGG + Chr6:43573533-43573552 MsG0680032517.01.T01:intron 30.0%
!!! TTTACTGTTTTTGTCTGTCT+TGG + Chr6:43573532-43573551 MsG0680032517.01.T01:intron 30.0%
AAACCAAACTCACAAAAGAG+AGG - Chr6:43571365-43571384 None:intergenic 35.0%
AAAGGGAAATAACTAGCATC+AGG - Chr6:43572347-43572366 None:intergenic 35.0%
AAGTCCAACCCAAAAAAAGT+AGG + Chr6:43572259-43572278 MsG0680032517.01.T01:intron 35.0%
AATGAAACACAGTGACCAAA+GGG - Chr6:43574719-43574738 None:intergenic 35.0%
AATGTAATCACATGTGTCAG+TGG - Chr6:43575958-43575977 None:intergenic 35.0%
ACAGACAAGAAATGTAGGTT+AGG - Chr6:43574912-43574931 None:intergenic 35.0%
AGAAAACGGTTTGTCAAATG+AGG - Chr6:43574959-43574978 None:intergenic 35.0%
AGAAGAAGAAGAAGAAGAGA+AGG - Chr6:43570670-43570689 None:intergenic 35.0%
ATAGTGTATTCTGTGTTGAG+TGG + Chr6:43573096-43573115 MsG0680032517.01.T01:intron 35.0%
ATATATGAAACAGCACCAAC+AGG - Chr6:43576181-43576200 None:intergenic 35.0%
ATGCCATATTTCACGTTTCT+TGG - Chr6:43572206-43572225 None:intergenic 35.0%
CAGCGTAAGTTTATTGAGAA+GGG + Chr6:43573878-43573897 MsG0680032517.01.T01:intron 35.0%
CCAATGAAGAGACATTTAAC+TGG - Chr6:43576140-43576159 None:intergenic 35.0%
CCAGTTAAATGTCTCTTCAT+TGG + Chr6:43576137-43576156 MsG0680032517.01.T01:intron 35.0%
CCGAACTTACTTAATAGAGA+TGG - Chr6:43575811-43575830 None:intergenic 35.0%
CTAAACTTGGACAGAGATAA+CGG - Chr6:43575113-43575132 None:intergenic 35.0%
CTATTAAGTAAGTTCGGAAC+TGG + Chr6:43575814-43575833 MsG0680032517.01.T01:intron 35.0%
CTCATCTATCAGTATTCAGT+GGG + Chr6:43572378-43572397 MsG0680032517.01.T01:intron 35.0%
GAAAACGATAGTTGAGTTTG+AGG + Chr6:43573042-43573061 MsG0680032517.01.T01:intron 35.0%
GAAGAAGAAGAAGAAGAGAA+GGG - Chr6:43570669-43570688 None:intergenic 35.0%
GACATGTAATGAGAGGTAAT+TGG - Chr6:43575229-43575248 None:intergenic 35.0%
GAGAGAAAATGGCTGTTATT+TGG + Chr6:43573420-43573439 MsG0680032517.01.T01:intron 35.0%
GATAATGTGTAACTGCTGAA+AGG + Chr6:43575617-43575636 MsG0680032517.01.T01:intron 35.0%
GATCCTTGTTCTTATCTACA+AGG + Chr6:43570857-43570876 MsG0680032517.01.T01:five_prime_UTR 35.0%
GGTTATGCGAAAATTCACAT+TGG - Chr6:43571814-43571833 None:intergenic 35.0%
GTAAGTTTATTGAGAAGGGT+TGG + Chr6:43573882-43573901 MsG0680032517.01.T01:intron 35.0%
GTACCTTGTAGATAAGAACA+AGG - Chr6:43570863-43570882 None:intergenic 35.0%
GTAGCAATTAACTCAAACTC+CGG - Chr6:43575713-43575732 None:intergenic 35.0%
GTTTAAATGAGGAGAAGACT+TGG + Chr6:43572972-43572991 MsG0680032517.01.T01:intron 35.0%
GTTTCATATATGGACATCGA+CGG + Chr6:43576190-43576209 MsG0680032517.01.T01:CDS 35.0%
TACTTAATAGAGATGGACCT+GGG - Chr6:43575804-43575823 None:intergenic 35.0%
TAGTGTATTCTGTGTTGAGT+GGG + Chr6:43573097-43573116 MsG0680032517.01.T01:intron 35.0%
TATTTGGTACTCCAATGTGT+GGG + Chr6:43573436-43573455 MsG0680032517.01.T01:intron 35.0%
TCAAAATAGACTCTCGACTA+AGG + Chr6:43573206-43573225 MsG0680032517.01.T01:intron 35.0%
TCTCCAAGAAACGTGAAATA+TGG + Chr6:43572200-43572219 MsG0680032517.01.T01:intron 35.0%
TGGATTTAATTGATTGGACG+GGG + Chr6:43573808-43573827 MsG0680032517.01.T01:intron 35.0%
TGTTGTAAAGGAATGTGAAG+AGG + Chr6:43575767-43575786 MsG0680032517.01.T01:CDS 35.0%
TTACTTAATAGAGATGGACC+TGG - Chr6:43575805-43575824 None:intergenic 35.0%
TTATTTGGTACTCCAATGTG+TGG + Chr6:43573435-43573454 MsG0680032517.01.T01:intron 35.0%
TTCATAAGGAAGTTAGGCAA+TGG + Chr6:43572784-43572803 MsG0680032517.01.T01:intron 35.0%
TTGCTTGTAGGACAAACAAT+CGG + Chr6:43574480-43574499 MsG0680032517.01.T01:intron 35.0%
TTGGATAGCATTGCTAAACT+TGG - Chr6:43575126-43575145 None:intergenic 35.0%
TTTCATATATGGACATCGAC+GGG + Chr6:43576191-43576210 MsG0680032517.01.T01:CDS 35.0%
TTTCTGATGCAGATTTGTCT+CGG + Chr6:43573739-43573758 MsG0680032517.01.T01:intron 35.0%
TTTGTCAAATGAGGACTTCA+GGG - Chr6:43574950-43574969 None:intergenic 35.0%
! AGCAGTTTGATCCTTTGTTT+AGG + Chr6:43573776-43573795 MsG0680032517.01.T01:intron 35.0%
! AGCTAACTGAACTTCTTTTG+TGG + Chr6:43576044-43576063 MsG0680032517.01.T01:intron 35.0%
! AGTCATCTTTTTGTGTAGGT+GGG + Chr6:43573231-43573250 MsG0680032517.01.T01:intron 35.0%
! ATTTCTGCAACTTGCTTAAC+AGG - Chr6:43576418-43576437 None:intergenic 35.0%
! CAAATTTTGTGCACTAAAGG+AGG - Chr6:43575857-43575876 None:intergenic 35.0%
! CATGTTTCTCAATCTGAAGT+TGG + Chr6:43570821-43570840 MsG0680032517.01.T01:five_prime_UTR 35.0%
! GGATAGTCATCTTTTTGTGT+AGG + Chr6:43573227-43573246 MsG0680032517.01.T01:intron 35.0%
! GGTTCTGCATTGACAAAAAT+TGG + Chr6:43570959-43570978 MsG0680032517.01.T01:intron 35.0%
! GGTTGCAAAGTTTGACTTTA+TGG - Chr6:43570888-43570907 None:intergenic 35.0%
! TAGTCATCTTTTTGTGTAGG+TGG + Chr6:43573230-43573249 MsG0680032517.01.T01:intron 35.0%
! TTACCTCTCTTTTGTGAGTT+TGG + Chr6:43571359-43571378 MsG0680032517.01.T01:intron 35.0%
! TTCGGAAATTTGAAGCTCTA+TGG + Chr6:43573146-43573165 MsG0680032517.01.T01:intron 35.0%
! TTCTCAGTGGTGTTAAAGAA+CGG + Chr6:43576581-43576600 MsG0680032517.01.T01:CDS 35.0%
! TTTCTGCAACTTGCTTAACA+GGG - Chr6:43576417-43576436 None:intergenic 35.0%
!! AAGAGCTTTAGGATACAATC+TGG - Chr6:43575318-43575337 None:intergenic 35.0%
!! AGGTTTGTTGAGCATTTAAG+AGG + Chr6:43574657-43574676 MsG0680032517.01.T01:intron 35.0%
!! TGAAAACGAAGGTTCTAGAA+TGG + Chr6:43573175-43573194 MsG0680032517.01.T01:intron 35.0%
!! TGTTGGTGCTGTTTCATATA+TGG + Chr6:43576180-43576199 MsG0680032517.01.T01:CDS 35.0%
!! TTGAGTCTGGAATTGCTTTT+AGG + Chr6:43572105-43572124 MsG0680032517.01.T01:intron 35.0%
!! TTTTTCGGCACAAAGCTTTT+TGG - Chr6:43576262-43576281 None:intergenic 35.0%
!!! AGCTCCTTATTTTGGCATAA+AGG + Chr6:43574998-43575017 MsG0680032517.01.T01:five_prime_UTR 35.0%
!!! ATGAGTGTATGCTGGTTTTA+AGG + Chr6:43571133-43571152 MsG0680032517.01.T01:intron 35.0%
!!! ATGTCCTACTTTTTTTGGGT+TGG - Chr6:43572266-43572285 None:intergenic 35.0%
!!! CGAGCTAAGAGCATTTTTTT+TGG + Chr6:43573938-43573957 MsG0680032517.01.T01:intron 35.0%
!!! GGTTACTCTTTTTTTGCTGA+TGG + Chr6:43573854-43573873 MsG0680032517.01.T01:intron 35.0%
!!! GTTTTTTTCGCTTAGCTCAT+AGG + Chr6:43573983-43574002 MsG0680032517.01.T01:intron 35.0%
!!! TCTTTTGTGAGTTTGGTTTG+CGG + Chr6:43571366-43571385 MsG0680032517.01.T01:intron 35.0%
!!! TGGGGAAATTGGTTTTGTTT+AGG + Chr6:43574048-43574067 MsG0680032517.01.T01:intron 35.0%
AAAAAGAGTAACCATGCGCA+AGG - Chr6:43573847-43573866 None:intergenic 40.0%
AAAGTCAAACTTTGCAACCG+TGG + Chr6:43570889-43570908 MsG0680032517.01.T01:five_prime_UTR 40.0%
AAGGAAGTTAGGCAATGGTA+TGG + Chr6:43572789-43572808 MsG0680032517.01.T01:intron 40.0%
AAGTAGGACATTAGATGGAG+AGG + Chr6:43572275-43572294 MsG0680032517.01.T01:intron 40.0%
AATCCACACCACCGAAAAAA+TGG - Chr6:43573302-43573321 None:intergenic 40.0%
AATTAGACGTGCAATCCCTT+CGG - Chr6:43572650-43572669 None:intergenic 40.0%
ACTAGATGATCAAGCATTCC+AGG - Chr6:43575481-43575500 None:intergenic 40.0%
ACTTAATAGAGATGGACCTG+GGG - Chr6:43575803-43575822 None:intergenic 40.0%
AGAAGAAGAGAAGGGTTTGT+AGG - Chr6:43570661-43570680 None:intergenic 40.0%
AGCCAACATGATTGGTGAAA+CGG + Chr6:43572909-43572928 MsG0680032517.01.T01:intron 40.0%
AGTGGCTATGTTGAGATAGA+TGG + Chr6:43575406-43575425 MsG0680032517.01.T01:CDS 40.0%
AGTGTATTCTGTGTTGAGTG+GGG + Chr6:43573098-43573117 MsG0680032517.01.T01:intron 40.0%
AGTTCTGTTCCTGTGTAGTT+TGG + Chr6:43573564-43573583 MsG0680032517.01.T01:intron 40.0%
ATCAAGCATTCCAGGATATG+TGG - Chr6:43575473-43575492 None:intergenic 40.0%
ATCCACACCACCGAAAAAAT+GGG - Chr6:43573301-43573320 None:intergenic 40.0%
ATGAAACACAGTGACCAAAG+GGG - Chr6:43574718-43574737 None:intergenic 40.0%
ATGATCACGACAGCACAATT+TGG - Chr6:43576466-43576485 None:intergenic 40.0%
ATGCTTGATCATCTAGTTGC+AGG + Chr6:43575484-43575503 MsG0680032517.01.T01:CDS 40.0%
ATGGTGCATGTTGCTATCTT+TGG + Chr6:43574071-43574090 MsG0680032517.01.T01:intron 40.0%
ATTTCGGTAGCCAACATGAT+TGG + Chr6:43572901-43572920 MsG0680032517.01.T01:intron 40.0%
CAAGTTCATGTCCAGCATTT+GGG + Chr6:43572449-43572468 MsG0680032517.01.T01:intron 40.0%
CAATCTTAGCGCCTAAACAA+AGG - Chr6:43573790-43573809 None:intergenic 40.0%
CAATGAAACACAGTGACCAA+AGG - Chr6:43574720-43574739 None:intergenic 40.0%
CGAGTCGTGTAAAACATAAC+TGG + Chr6:43572572-43572591 MsG0680032517.01.T01:intron 40.0%
CTATACGATGTAACACACCA+AGG - Chr6:43573696-43573715 None:intergenic 40.0%
CTGTAACCGATAAGAGCTTT+AGG - Chr6:43575329-43575348 None:intergenic 40.0%
GAAGGAAGTTCCAGATTGTA+AGG + Chr6:43573912-43573931 MsG0680032517.01.T01:intron 40.0%
GCAGCGTAAGTTTATTGAGA+AGG + Chr6:43573877-43573896 MsG0680032517.01.T01:intron 40.0%
GCAGTTACACATTATCAGCA+CGG - Chr6:43575613-43575632 None:intergenic 40.0%
GCTAAGCGAAAAAAACAGCT+AGG - Chr6:43573979-43573998 None:intergenic 40.0%
GCTCATCTATCAGTATTCAG+TGG + Chr6:43572377-43572396 MsG0680032517.01.T01:intron 40.0%
GGAGACGAGGAGAATAAAAT+TGG - Chr6:43576312-43576331 None:intergenic 40.0%
GGCTATGTAATCGAGCATTT+GGG + Chr6:43574782-43574801 MsG0680032517.01.T01:five_prime_UTR 40.0%
GTAAAGAACTCACAGAACCA+CGG - Chr6:43570909-43570928 None:intergenic 40.0%
GTGGCTATGTTGAGATAGAT+GGG + Chr6:43575407-43575426 MsG0680032517.01.T01:CDS 40.0%
GTTTGTCAAATGAGGACTTC+AGG - Chr6:43574951-43574970 None:intergenic 40.0%
TAGCGACTGTCCTTCAAATT+GGG + Chr6:43573344-43573363 MsG0680032517.01.T01:intron 40.0%
TCAAGTTCATGTCCAGCATT+TGG + Chr6:43572448-43572467 MsG0680032517.01.T01:intron 40.0%
TCACGTTTCTTGGAGATAAG+TGG - Chr6:43572196-43572215 None:intergenic 40.0%
TCCTGACAATCAATTCCATG+CGG - Chr6:43575744-43575763 None:intergenic 40.0%
TCTCAACATAGCCACTCATA+TGG - Chr6:43575402-43575421 None:intergenic 40.0%
TGGAAACAATGAGTGTATGC+TGG + Chr6:43571125-43571144 MsG0680032517.01.T01:intron 40.0%
TGGCTATGTAATCGAGCATT+TGG + Chr6:43574781-43574800 MsG0680032517.01.T01:five_prime_UTR 40.0%
TGTGCTTCTTCATGTAGTTC+CGG + Chr6:43573597-43573616 MsG0680032517.01.T01:intron 40.0%
TTCATATATGGACATCGACG+GGG + Chr6:43576192-43576211 MsG0680032517.01.T01:CDS 40.0%
TTTCCAAACAACCCACACAT+TGG - Chr6:43573450-43573469 None:intergenic 40.0%
! AAGCTCTTATCGGTTACAGT+TGG + Chr6:43575330-43575349 MsG0680032517.01.T01:intron 40.0%
! AGGAGCATATTCCAGGTATA+CGG + Chr6:43574807-43574826 MsG0680032517.01.T01:five_prime_UTR 40.0%
! ATTGACTTCCTGTTTCGACA+CGG + Chr6:43576484-43576503 MsG0680032517.01.T01:CDS 40.0%
! CTCTCTTTTGTGTCTGTGTT+CGG + Chr6:43570938-43570957 MsG0680032517.01.T01:intron 40.0%
! CTTTGTTTAGGCGCTAAGAT+TGG + Chr6:43573788-43573807 MsG0680032517.01.T01:intron 40.0%
! TCGCAAGTCTTGTAACTTTG+CGG + Chr6:43574114-43574133 MsG0680032517.01.T01:intron 40.0%
! TGAGTGAACTCAAGTTTGCT+TGG - Chr6:43572073-43572092 None:intergenic 40.0%
! TGGTTGTTGATGGAAGATGA+TGG - Chr6:43570731-43570750 None:intergenic 40.0%
! TGTGTTCGTTTTCCCAATGA+TGG + Chr6:43574689-43574708 MsG0680032517.01.T01:five_prime_UTR 40.0%
!! AAAGGCACACCTTCGTTTTT+CGG - Chr6:43576277-43576296 None:intergenic 40.0%
!! ATGGAAGATGATGGAGAGAA+AGG - Chr6:43570722-43570741 None:intergenic 40.0%
!! CTCTTTGAAGCATAGGCTTA+TGG + Chr6:43575373-43575392 MsG0680032517.01.T01:intron 40.0%
!! TTCGTCATGGCGTAGTTTTA+GGG + Chr6:43573001-43573020 MsG0680032517.01.T01:intron 40.0%
!! TTTGTATGCGTTTGGTTCTG+CGG + Chr6:43571579-43571598 MsG0680032517.01.T01:intron 40.0%
!!! TTATTGCCCCATTTTTTCGG+TGG + Chr6:43573291-43573310 MsG0680032517.01.T01:intron 40.0%
!!! TTTGCTTTTTTCCTTGCGCA+TGG + Chr6:43573833-43573852 MsG0680032517.01.T01:intron 40.0%
AAGAAAAGGAGGGAAGAGTG+TGG - Chr6:43570751-43570770 None:intergenic 45.0%
AAGGAATGTGAAGAGGAAGC+AGG + Chr6:43575774-43575793 MsG0680032517.01.T01:CDS 45.0%
AATACCTCGTTCCGTATACC+TGG - Chr6:43574821-43574840 None:intergenic 45.0%
ACATGATTGGTGAAACGGAC+AGG + Chr6:43572914-43572933 MsG0680032517.01.T01:intron 45.0%
ACTGGTGGCTGAAGAAGAAA+AGG - Chr6:43570765-43570784 None:intergenic 45.0%
AGAAAGGTGAGAGGGTTTGA+AGG - Chr6:43570706-43570725 None:intergenic 45.0%
AGAAATACCCGTGTCGAAAC+AGG - Chr6:43576495-43576514 None:intergenic 45.0%
AGATCAACAACCCAAGCACA+AGG - Chr6:43574179-43574198 None:intergenic 45.0%
AGATGAGCGAAGCCGTTAAA+AGG - Chr6:43572365-43572384 None:intergenic 45.0%
AGCGACTGTCCTTCAAATTG+GGG + Chr6:43573345-43573364 MsG0680032517.01.T01:intron 45.0%
AGCTTTCATTCTATCGGCAC+TGG + Chr6:43572321-43572340 MsG0680032517.01.T01:intron 45.0%
ATTACTTTCCCTGCTTCCGA+AGG + Chr6:43572631-43572650 MsG0680032517.01.T01:intron 45.0%
CACACCAAGGAAACAGAATG+AGG - Chr6:43573683-43573702 None:intergenic 45.0%
CACACGAAATCCACATATCC+TGG + Chr6:43575460-43575479 MsG0680032517.01.T01:CDS 45.0%
CCTCGTGAGCTTAACTCATA+AGG - Chr6:43572238-43572257 None:intergenic 45.0%
CCTTATGAGTTAAGCTCACG+AGG + Chr6:43572235-43572254 MsG0680032517.01.T01:intron 45.0%
CGAACACAGACACAAAAGAG+AGG - Chr6:43570940-43570959 None:intergenic 45.0%
CGACGGGGATAGATACAAAA+GGG + Chr6:43576207-43576226 MsG0680032517.01.T01:CDS 45.0%
CTAAAGGAGGAGAAGGATGA+AGG - Chr6:43575844-43575863 None:intergenic 45.0%
CTAACAGCACCAAACTACAC+AGG - Chr6:43573576-43573595 None:intergenic 45.0%
CTTGATCATCTAGTTGCAGG+AGG + Chr6:43575487-43575506 MsG0680032517.01.T01:CDS 45.0%
GAAGGGTTTGTAGGAGAAGA+AGG - Chr6:43570652-43570671 None:intergenic 45.0%
GACTTCTCTTCGCTATCCAT+AGG - Chr6:43575441-43575460 None:intergenic 45.0%
GATGAGCGAAGCCGTTAAAA+GGG - Chr6:43572364-43572383 None:intergenic 45.0%
GCTTATGGAGTCCATATGAG+TGG + Chr6:43575388-43575407 MsG0680032517.01.T01:exon 45.0%
GTAGCGACTGTCCTTCAAAT+TGG + Chr6:43573343-43573362 MsG0680032517.01.T01:intron 45.0%
GTCCGTTTCACCAATCATGT+TGG - Chr6:43572914-43572933 None:intergenic 45.0%
GTGGCTGAAGAAGAAAAGGA+GGG - Chr6:43570761-43570780 None:intergenic 45.0%
TAGCTCGCATCCTTACAATC+TGG - Chr6:43573925-43573944 None:intergenic 45.0%
TATTCCAGGTATACGGAACG+AGG + Chr6:43574814-43574833 MsG0680032517.01.T01:five_prime_UTR 45.0%
TATTCTGTGTTGAGTGGGGA+TGG + Chr6:43573102-43573121 MsG0680032517.01.T01:intron 45.0%
TCCACACCACCGAAAAAATG+GGG - Chr6:43573300-43573319 None:intergenic 45.0%
TCGACGGGGATAGATACAAA+AGG + Chr6:43576206-43576225 MsG0680032517.01.T01:CDS 45.0%
TCTTGCAGAGCTAAACCTGT+TGG + Chr6:43576163-43576182 MsG0680032517.01.T01:intron 45.0%
TGATCACGACACTACTGGAA+AGG - Chr6:43576333-43576352 None:intergenic 45.0%
TGATGGAGAGAAAGGTGAGA+GGG - Chr6:43570714-43570733 None:intergenic 45.0%
TGTAATCGAGCATTTGGGAG+AGG + Chr6:43574787-43574806 MsG0680032517.01.T01:five_prime_UTR 45.0%
TTACTTTCCCTGCTTCCGAA+GGG + Chr6:43572632-43572651 MsG0680032517.01.T01:intron 45.0%
TTGACTTCCTGTTTCGACAC+GGG + Chr6:43576485-43576504 MsG0680032517.01.T01:CDS 45.0%
TTGAGTCGGACTGCTTCTAA+TGG + Chr6:43573621-43573640 MsG0680032517.01.T01:intron 45.0%
TTGTGCACTAAAGGAGGAGA+AGG - Chr6:43575851-43575870 None:intergenic 45.0%
! AAGGTTGATCACGACACTAC+TGG - Chr6:43576338-43576357 None:intergenic 45.0%
! ACTCCAATGTGTGGGTTGTT+TGG + Chr6:43573444-43573463 MsG0680032517.01.T01:intron 45.0%
! AGCTTTGTGCCGAAAAACGA+AGG + Chr6:43576265-43576284 MsG0680032517.01.T01:CDS 45.0%
! AGTTTTCTTGTCGGCAGTGT+TGG + Chr6:43573714-43573733 MsG0680032517.01.T01:intron 45.0%
! ATGATGGAGAGAAAGGTGAG+AGG - Chr6:43570715-43570734 None:intergenic 45.0%
! CATGTAGTTCCGGTTTGAGT+CGG + Chr6:43573607-43573626 MsG0680032517.01.T01:intron 45.0%
! GACTTGGTAGAAGTTCGTCA+TGG + Chr6:43572988-43573007 MsG0680032517.01.T01:intron 45.0%
! GCTTCTAATGGTGAGAGTGT+CGG + Chr6:43573633-43573652 MsG0680032517.01.T01:intron 45.0%
! GTTCGTCATGGCGTAGTTTT+AGG + Chr6:43573000-43573019 MsG0680032517.01.T01:intron 45.0%
! TAACACCACTGAGAAGCACA+TGG - Chr6:43576576-43576595 None:intergenic 45.0%
! TAGTGTAGTGGAGTTGGAGA+AGG + Chr6:43572944-43572963 MsG0680032517.01.T01:intron 45.0%
! TCTTTTTGTGTAGGTGGGTG+TGG + Chr6:43573236-43573255 MsG0680032517.01.T01:intron 45.0%
! TTTTCTTCTTCAGCCACCAG+TGG + Chr6:43570764-43570783 MsG0680032517.01.T01:five_prime_UTR 45.0%
!! CTAAAGTGTCGGTGCTACAT+AGG - Chr6:43575907-43575926 None:intergenic 45.0%
!! CTTCTAATGGTGAGAGTGTC+GGG + Chr6:43573634-43573653 MsG0680032517.01.T01:intron 45.0%
!! TTCTAATGGTGAGAGTGTCG+GGG + Chr6:43573635-43573654 MsG0680032517.01.T01:intron 45.0%
AAAGGTTCCCCCTCTGACAA+CGG - Chr6:43572835-43572854 None:intergenic 50.0%
ACACTACTGGAAAGGAGACG+AGG - Chr6:43576325-43576344 None:intergenic 50.0%
ACAGGTCCAAGGTAGTGTAG+TGG + Chr6:43572932-43572951 MsG0680032517.01.T01:intron 50.0%
ACCAAAGGGGCTTCCATCAT+TGG - Chr6:43574705-43574724 None:intergenic 50.0%
ACGTCGCCCTCAATGACAAA+TGG - Chr6:43574514-43574533 None:intergenic 50.0%
AGAAGCAGTCCGACTCAAAC+CGG - Chr6:43573619-43573638 None:intergenic 50.0%
ATAGGCTGTTGCAACGAACC+AGG + Chr6:43572538-43572557 MsG0680032517.01.T01:intron 50.0%
CCAAAGGGGCTTCCATCATT+GGG - Chr6:43574704-43574723 None:intergenic 50.0%
CCAACTCCACTACACTACCT+TGG - Chr6:43572941-43572960 None:intergenic 50.0%
CGCTCCTCATTCTGTTTCCT+TGG + Chr6:43573676-43573695 MsG0680032517.01.T01:intron 50.0%
GCCGCATGGAATTGATTGTC+AGG + Chr6:43575740-43575759 MsG0680032517.01.T01:intron 50.0%
GCGACTGTCCTTCAAATTGG+GGG + Chr6:43573346-43573365 MsG0680032517.01.T01:intron 50.0%
GGTGGCTGAAGAAGAAAAGG+AGG - Chr6:43570762-43570781 None:intergenic 50.0%
TAACACCAATGTCGGCGTGT+CGG + Chr6:43576000-43576019 MsG0680032517.01.T01:intron 50.0%
TAGGCTGTTGCAACGAACCA+GGG + Chr6:43572539-43572558 MsG0680032517.01.T01:intron 50.0%
TCATCTAGTTGCAGGAGGAC+TGG + Chr6:43575492-43575511 MsG0680032517.01.T01:CDS 50.0%
TCCATTGCTGAAGACAGCTG+AGG + Chr6:43574742-43574761 MsG0680032517.01.T01:five_prime_UTR 50.0%
TCCTCAGCTGTCTTCAGCAA+TGG - Chr6:43574746-43574765 None:intergenic 50.0%
TGAGGACTTCAGGGTATAGC+TGG - Chr6:43574941-43574960 None:intergenic 50.0%
TGATGGGATCCGTTGTCAGA+GGG + Chr6:43572823-43572842 MsG0680032517.01.T01:intron 50.0%
TTGAGCCATGTGCTTCTCAG+TGG + Chr6:43576568-43576587 MsG0680032517.01.T01:intron 50.0%
TTGATGGGATCCGTTGTCAG+AGG + Chr6:43572822-43572841 MsG0680032517.01.T01:intron 50.0%
! CCAAGGTAGTGTAGTGGAGT+TGG + Chr6:43572938-43572957 MsG0680032517.01.T01:intron 50.0%
! GGGAAGAGTGTGGTTGTTGA+TGG - Chr6:43570741-43570760 None:intergenic 50.0%
! TTGGGAGAGGAGCATATTCC+AGG + Chr6:43574800-43574819 MsG0680032517.01.T01:five_prime_UTR 50.0%
!! CGTGCTGCAGCTCCTTATTT+TGG + Chr6:43574990-43575009 MsG0680032517.01.T01:five_prime_UTR 50.0%
!! TAGATGGGCAGAAGCACCTA+TGG + Chr6:43575422-43575441 MsG0680032517.01.T01:CDS 50.0%
AACACCAATGTCGGCGTGTC+GGG + Chr6:43576001-43576020 MsG0680032517.01.T01:intron 55.0%
AAGAGGAAGCAGGAATCCCC+AGG + Chr6:43575784-43575803 MsG0680032517.01.T01:CDS 55.0%
ACCCAAGCACAAGGCATGCA+CGG - Chr6:43574170-43574189 None:intergenic 55.0%
ATGGGATCCGTTGTCAGAGG+GGG + Chr6:43572825-43572844 MsG0680032517.01.T01:intron 55.0%
CAGCACGTGCACACTCACAT+GGG + Chr6:43570787-43570806 MsG0680032517.01.T01:five_prime_UTR 55.0%
GAACTCTCAGAGAAGCCTGC+AGG + Chr6:43574409-43574428 MsG0680032517.01.T01:intron 55.0%
GAGGAAAAAACCAGCGCGCT+TGG + Chr6:43574761-43574780 MsG0680032517.01.T01:five_prime_UTR 55.0%
GATGGGATCCGTTGTCAGAG+GGG + Chr6:43572824-43572843 MsG0680032517.01.T01:intron 55.0%
GATTACATAGCCAAGCGCGC+TGG - Chr6:43574774-43574793 None:intergenic 55.0%
GCTCAGAGCCCCCAATTTGA+AGG - Chr6:43573357-43573376 None:intergenic 55.0%
GTCATTGAGGGCGACGTTGT+TGG + Chr6:43574517-43574536 MsG0680032517.01.T01:five_prime_UTR 55.0%
GTGCAATCCCTTCGGAAGCA+GGG - Chr6:43572642-43572661 None:intergenic 55.0%
TGGTGAAACGGACAGGTCCA+AGG + Chr6:43572921-43572940 MsG0680032517.01.T01:intron 55.0%
TTGCTACTGTTGCAGCCGCA+TGG + Chr6:43575726-43575745 MsG0680032517.01.T01:intron 55.0%
! AGAAGGGTTGGCAGCAGTGA+AGG + Chr6:43573894-43573913 MsG0680032517.01.T01:intron 55.0%
! CCCAATGATGGAAGCCCCTT+TGG + Chr6:43574701-43574720 MsG0680032517.01.T01:five_prime_UTR 55.0%
!! AATGGTGAGAGTGTCGGGGT+GGG + Chr6:43573639-43573658 MsG0680032517.01.T01:intron 55.0%
!! ATGGCAGTGAGGTGGTGGAT+TGG + Chr6:43573121-43573140 MsG0680032517.01.T01:intron 55.0%
!! TAATGGTGAGAGTGTCGGGG+TGG + Chr6:43573638-43573657 MsG0680032517.01.T01:intron 55.0%
!! TGAGGTGGTGGATTGGGCTT+CGG + Chr6:43573128-43573147 MsG0680032517.01.T01:intron 55.0%
!! TGGCAGTGAGGTGGTGGATT+GGG + Chr6:43573122-43573141 MsG0680032517.01.T01:intron 55.0%
!!! GCCCCATTTTTTCGGTGGTG+TGG + Chr6:43573296-43573315 MsG0680032517.01.T01:intron 55.0%
CCCAAGCACAAGGCATGCAC+GGG - Chr6:43574169-43574188 None:intergenic 60.0%
CCCGTGCATGCCTTGTGCTT+GGG + Chr6:43574166-43574185 MsG0680032517.01.T01:intron 60.0%
CGACTCGACAACGTTTGCCC+TGG - Chr6:43572559-43572578 None:intergenic 60.0%
CGTGCAATCCCTTCGGAAGC+AGG - Chr6:43572643-43572662 None:intergenic 60.0%
GCAGCACGTGCACACTCACA+TGG + Chr6:43570786-43570805 MsG0680032517.01.T01:five_prime_UTR 60.0%
GTTGAGTGGGGATGGCAGTG+AGG + Chr6:43573110-43573129 MsG0680032517.01.T01:intron 60.0%
TCCCGTGCATGCCTTGTGCT+TGG + Chr6:43574165-43574184 MsG0680032517.01.T01:intron 60.0%
CAGACCCGACACGCCGACAT+TGG - Chr6:43576008-43576027 None:intergenic 65.0%
GAGTGGGGATGGCAGTGAGG+TGG + Chr6:43573113-43573132 MsG0680032517.01.T01:intron 65.0%
GAGTGTGCACGTGCTGCCAC+TGG - Chr6:43570783-43570802 None:intergenic 65.0%
TGGGGATGGCAGTGAGGTGG+TGG + Chr6:43573116-43573135 MsG0680032517.01.T01:intron 65.0%
TGTGCACGTGCTGCCACTGG+TGG - Chr6:43570780-43570799 None:intergenic 65.0%
!! GTGAGAGTGTCGGGGTGGGT+TGG + Chr6:43573643-43573662 MsG0680032517.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 43570611 43576627 43570611 ID=MsG0680032517.01;Name=MsG0680032517.01
Chr6 mRNA 43570611 43576627 43570611 ID=MsG0680032517.01.T01;Parent=MsG0680032517.01;Name=MsG0680032517.01.T01;_AED=0.38;_eAED=0.41;_QI=640|0.75|0.77|1|0.5|0.44|9|0|153
Chr6 exon 43576573 43576627 43576573 ID=MsG0680032517.01.T01:exon:11696;Parent=MsG0680032517.01.T01
Chr6 exon 43576386 43576506 43576386 ID=MsG0680032517.01.T01:exon:11695;Parent=MsG0680032517.01.T01
Chr6 exon 43576171 43576286 43576171 ID=MsG0680032517.01.T01:exon:11694;Parent=MsG0680032517.01.T01
Chr6 exon 43575762 43575820 43575762 ID=MsG0680032517.01.T01:exon:11693;Parent=MsG0680032517.01.T01
Chr6 exon 43575388 43575513 43575388 ID=MsG0680032517.01.T01:exon:11692;Parent=MsG0680032517.01.T01
Chr6 exon 43574942 43575019 43574942 ID=MsG0680032517.01.T01:exon:11691;Parent=MsG0680032517.01.T01
Chr6 exon 43574659 43574835 43574659 ID=MsG0680032517.01.T01:exon:11690;Parent=MsG0680032517.01.T01
Chr6 exon 43574490 43574554 43574490 ID=MsG0680032517.01.T01:exon:11689;Parent=MsG0680032517.01.T01
Chr6 exon 43570611 43570915 43570611 ID=MsG0680032517.01.T01:exon:11688;Parent=MsG0680032517.01.T01
Chr6 five_prime_UTR 43570611 43570915 43570611 ID=MsG0680032517.01.T01:five_prime_utr;Parent=MsG0680032517.01.T01
Chr6 five_prime_UTR 43574490 43574554 43574490 ID=MsG0680032517.01.T01:five_prime_utr;Parent=MsG0680032517.01.T01
Chr6 five_prime_UTR 43574659 43574835 43574659 ID=MsG0680032517.01.T01:five_prime_utr;Parent=MsG0680032517.01.T01
Chr6 five_prime_UTR 43574942 43575019 43574942 ID=MsG0680032517.01.T01:five_prime_utr;Parent=MsG0680032517.01.T01
Chr6 five_prime_UTR 43575388 43575402 43575388 ID=MsG0680032517.01.T01:five_prime_utr;Parent=MsG0680032517.01.T01
Chr6 CDS 43575403 43575513 43575403 ID=MsG0680032517.01.T01:cds;Parent=MsG0680032517.01.T01
Chr6 CDS 43575762 43575820 43575762 ID=MsG0680032517.01.T01:cds;Parent=MsG0680032517.01.T01
Chr6 CDS 43576171 43576286 43576171 ID=MsG0680032517.01.T01:cds;Parent=MsG0680032517.01.T01
Chr6 CDS 43576386 43576506 43576386 ID=MsG0680032517.01.T01:cds;Parent=MsG0680032517.01.T01
Chr6 CDS 43576573 43576627 43576573 ID=MsG0680032517.01.T01:cds;Parent=MsG0680032517.01.T01
Gene Sequence

>MsG0680032517.01.T01

ATGAGTGGCTATGTTGAGATAGATGGGCAGAAGCACCTATGGATAGCGAAGAGAAGTCACACGAAATCCACATATCCTGGAATGCTTGATCATCTAGTTGCAGGAGGACTGGAAAATGTTGTAAAGGAATGTGAAGAGGAAGCAGGAATCCCCAGGTCCATCTCTATTAAAGCTAAACCTGTTGGTGCTGTTTCATATATGGACATCGACGGGGATAGATACAAAAGGGATGTTCTATTCTGCTATGATTTGAAGCTTCCAAAAAGCTTTGTGCCGAAAAACGAAGATGGTGAAGTTGAAAGCTTCAAGTTAATCCCTGTTAAGCAAGTTGCAGAAATCATTCGCAAGACACAATTTTTCAAACCAAATTGTGCTGTCGTGATCATTGACTTCCTGTTTCGACACGGCCATGTGCTTCTCAGTGGTGTTAAAGAACGGCAATGTAGCTCTATAGCATTGTAG
Protein sequence

>MsG0680032517.01.T01

MSGYVEIDGQKHLWIAKRSHTKSTYPGMLDHLVAGGLENVVKECEEEAGIPRSISIKAKPVGAVSYMDIDGDRYKRDVLFCYDLKLPKSFVPKNEDGEVESFKLIPVKQVAEIIRKTQFFKPNCAVVIIDFLFRHGHVLLSGVKERQCSSIAL*