AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004581.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004581.01.T01 MTR_1g082900 64.412 340 24 9 1 256 1 327 3.55e-123 353
MsG0180004581.01.T01 MTR_1g082900 61.753 251 21 8 1 189 1 238 3.75e-76 232
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004581.01.T01 AT5G27560 42.901 324 89 7 27 256 20 341 5.57e-69 216
MsG0180004581.01.T01 AT5G27560 42.901 324 89 7 27 256 20 341 5.57e-69 216
MsG0180004581.01.T01 AT5G27560 42.901 324 89 7 27 256 20 341 5.57e-69 216
MsG0180004581.01.T01 AT5G27560 41.875 320 90 7 27 252 20 337 6.52e-65 206

Find 0 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATATAAATGACAA+GGG - Chr1:79930114-79930133 MsG0180004580.01.T01:intron 10.0%
!! TAAAAAAAATATAAATGACA+AGG - Chr1:79930113-79930132 MsG0180004580.01.T01:intron 10.0%
!! AAGTGAAAGAAAAATATATT+TGG + Chr1:79928829-79928848 None:intergenic 15.0%
!! ATGTATATAATAATCCTTAT+GGG + Chr1:79930857-79930876 None:intergenic 15.0%
!! ATTAAAAAAAGGAAGAATAA+TGG + Chr1:79931342-79931361 None:intergenic 15.0%
!! TAAATATATAGGGTTAATAT+AGG - Chr1:79929293-79929312 MsG0180004580.01.T01:intron 15.0%
!! TAAATGATTAAGGTTATTAT+AGG + Chr1:79929242-79929261 None:intergenic 15.0%
!! TATTAACCCTATATATTTAT+TGG + Chr1:79929292-79929311 None:intergenic 15.0%
!!! AATGAAGTATTAAATGATTA+AGG + Chr1:79929252-79929271 None:intergenic 15.0%
!!! TACATCTTATTTTGAATAAT+TGG - Chr1:79930700-79930719 MsG0180004580.01.T01:intron 15.0%
!!! TTGATGTTTCTATTAAAAAA+AGG + Chr1:79931353-79931372 None:intergenic 15.0%
!!! TTTGTTATTTCTTTTCTTTT+CGG - Chr1:79930545-79930564 MsG0180004580.01.T01:intron 15.0%
!! AAAATATATTTGGAAGTAGT+TGG + Chr1:79928819-79928838 None:intergenic 20.0%
!! AATAGACAAGAAATAATAGA+TGG + Chr1:79931130-79931149 None:intergenic 20.0%
!! CAATGCAAATTAAAATATAC+TGG + Chr1:79929729-79929748 None:intergenic 20.0%
!! CATGTATATAATAATCCTTA+TGG + Chr1:79930858-79930877 None:intergenic 20.0%
!! TAACGTATATACATAGAAAA+TGG + Chr1:79931307-79931326 None:intergenic 20.0%
!! TATGTATATACGTTATAGTT+GGG - Chr1:79931312-79931331 MsG0180004580.01.T01:intron 20.0%
!! TCAAAATGTGACAATTAAAA+AGG + Chr1:79929156-79929175 None:intergenic 20.0%
!!! AATAAAAGTATTTGTTGTCT+TGG + Chr1:79929192-79929211 None:intergenic 20.0%
!!! CCATTTTTAATATAAGATCA+GGG + Chr1:79929047-79929066 None:intergenic 20.0%
!!! TCCATTTTTAATATAAGATC+AGG + Chr1:79929048-79929067 None:intergenic 20.0%
! AACATGCACAATTATTTGTT+TGG - Chr1:79929773-79929792 MsG0180004580.01.T01:intron 25.0%
! AAGTCAAAATCATTTACAGA+CGG + Chr1:79931066-79931085 None:intergenic 25.0%
! AAGTGACAATTATAAAGGAA+CGG - Chr1:79929385-79929404 MsG0180004580.01.T01:intron 25.0%
! AATGATATAAGTTAGTAGTC+TGG + Chr1:79930741-79930760 None:intergenic 25.0%
! ACCCTACTGATAAAAAATTA+GGG - Chr1:79929067-79929086 MsG0180004580.01.T01:intron 25.0%
! ATATAATAATCCTTATGGGA+GGG + Chr1:79930853-79930872 None:intergenic 25.0%
! ATGAAAAAGTAAGAATTCAG+TGG + Chr1:79929667-79929686 None:intergenic 25.0%
! CAAAAGACTTTAGATATGTT+TGG - Chr1:79930407-79930426 MsG0180004580.01.T01:CDS 25.0%
! CCCTGATCTTATATTAAAAA+TGG - Chr1:79929044-79929063 MsG0180004580.01.T01:intron 25.0%
! CTAGCAATATATAAATTCTG+AGG - Chr1:79930615-79930634 MsG0180004580.01.T01:intron 25.0%
! CTATGTATATACGTTATAGT+TGG - Chr1:79931311-79931330 MsG0180004580.01.T01:intron 25.0%
! TATATAATAATCCTTATGGG+AGG + Chr1:79930854-79930873 None:intergenic 25.0%
! TATTCAAGAAACTAAATGTC+AGG - Chr1:79928984-79929003 MsG0180004580.01.T01:intron 25.0%
! TCTCTGCCAATAAATATATA+GGG - Chr1:79929283-79929302 MsG0180004580.01.T01:intron 25.0%
! TGCAAAAGTGACAATTATAA+AGG - Chr1:79929380-79929399 MsG0180004580.01.T01:intron 25.0%
! TTAACAACCATCTTAATTAC+AGG - Chr1:79928870-79928889 MsG0180004580.01.T01:intron 25.0%
! TTTGCAAGCAAATATCTATT+TGG + Chr1:79931200-79931219 None:intergenic 25.0%
!! ACATAAAGCATTAATCAATG+TGG + Chr1:79929595-79929614 None:intergenic 25.0%
!! ATTATTTCTTGTCTATTGTC+TGG - Chr1:79931133-79931152 MsG0180004580.01.T01:CDS 25.0%
!! GTTCAAAGTATCATTAAATG+TGG + Chr1:79929324-79929343 None:intergenic 25.0%
!! TGTATGATTGTCTGAAATTT+AGG + Chr1:79930519-79930538 None:intergenic 25.0%
!!! AGTTAAGGCAATACTTTTTA+AGG - Chr1:79930356-79930375 MsG0180004580.01.T01:CDS 25.0%
!!! CAAACATATCTAAAGTCTTT+TGG + Chr1:79930409-79930428 None:intergenic 25.0%
!!! GTTTTAAAGTATATCTAGCA+AGG + Chr1:79931282-79931301 None:intergenic 25.0%
!!! TAAAGTCTTTTGGAAAGAAA+TGG + Chr1:79930399-79930418 None:intergenic 25.0%
!!! TAGTTTTTCAAATGTTAACC+AGG - Chr1:79930471-79930490 MsG0180004580.01.T01:intron 25.0%
!!! TTTACTTATGGCTTGTTTTT+GGG + Chr1:79930989-79931008 None:intergenic 25.0%
!!! TTTTACTTATGGCTTGTTTT+TGG + Chr1:79930990-79931009 None:intergenic 25.0%
!!! TTTTAGCTCTATTCTTATGT+TGG + Chr1:79930098-79930117 None:intergenic 25.0%
AAACTAAATGTCAGGTTAGT+GGG - Chr1:79928992-79929011 MsG0180004580.01.T01:intron 30.0%
AAATGATACCATTATGTACC+TGG + Chr1:79930492-79930511 None:intergenic 30.0%
AATGTTAACCAGGTACATAA+TGG - Chr1:79930481-79930500 MsG0180004580.01.T01:intron 30.0%
AGTTCAACCTGTAATTAAGA+TGG + Chr1:79928880-79928899 None:intergenic 30.0%
ATGCACAATTATTTGTTTGG+TGG - Chr1:79929776-79929795 MsG0180004580.01.T01:intron 30.0%
ATGCAGACTATCTGAAAATT+AGG + Chr1:79930901-79930920 None:intergenic 30.0%
ATTCTTCCATTGGAAAATTG+AGG + Chr1:79928488-79928507 None:intergenic 30.0%
CATTTCACTTGAGAATTTGA+TGG - Chr1:79929684-79929703 MsG0180004580.01.T01:intron 30.0%
CCCTACTGATAAAAAATTAG+GGG - Chr1:79929068-79929087 MsG0180004580.01.T01:intron 30.0%
CTCTCTGCCAATAAATATAT+AGG - Chr1:79929282-79929301 MsG0180004580.01.T01:intron 30.0%
GACAATTAAAAAGGAACAGA+GGG + Chr1:79929147-79929166 None:intergenic 30.0%
GACCCTACTGATAAAAAATT+AGG - Chr1:79929066-79929085 MsG0180004580.01.T01:intron 30.0%
GATGGTTGTTAAAAATTGAG+TGG + Chr1:79928862-79928881 None:intergenic 30.0%
TATAATAATCCTTATGGGAG+GGG + Chr1:79930852-79930871 None:intergenic 30.0%
TATTCATATATTTGCAGCCA+AGG - Chr1:79930269-79930288 MsG0180004580.01.T01:intron 30.0%
TATTCTAACATCTGATGATC+AGG + Chr1:79929863-79929882 None:intergenic 30.0%
TGACAATTAAAAAGGAACAG+AGG + Chr1:79929148-79929167 None:intergenic 30.0%
TGTTAAAAATTGAGTGGAAG+CGG + Chr1:79928856-79928875 None:intergenic 30.0%
TTCACATTTCTATCATGATG+AGG + Chr1:79930025-79930044 None:intergenic 30.0%
! TAAAGCATTAATCAATGTGG+TGG + Chr1:79929592-79929611 None:intergenic 30.0%
!! ACCACTTTTGGATTTAAAAG+TGG - Chr1:79931009-79931028 MsG0180004580.01.T01:CDS 30.0%
!! TCCAAAAGTGGTTTTACTTA+TGG + Chr1:79931001-79931020 None:intergenic 30.0%
!! TCCACTTTTAAATCCAAAAG+TGG + Chr1:79931013-79931032 None:intergenic 30.0%
!! TGTAATGATAGTTTCTAGTG+AGG + Chr1:79928600-79928619 None:intergenic 30.0%
!!! ACCCCTAATTTTTTATCAGT+AGG + Chr1:79929072-79929091 None:intergenic 30.0%
!!! ATGCTTTGTTTAGTTTTGCA+AGG - Chr1:79929560-79929579 MsG0180004580.01.T01:intron 30.0%
!!! CCCCTAATTTTTTATCAGTA+GGG + Chr1:79929071-79929090 None:intergenic 30.0%
AAATAACATCTGCGCAACAT+AGG + Chr1:79931411-79931430 None:intergenic 35.0%
AACTAAATGTCAGGTTAGTG+GGG - Chr1:79928993-79929012 MsG0180004580.01.T01:intron 35.0%
ACAAAGTCTGTTTGACAAAG+CGG - Chr1:79931463-79931482 MsG0180004581.01.T01:CDS 35.0%
ACCTCAATATCTTCAGTATC+AGG + Chr1:79931239-79931258 None:intergenic 35.0%
ACCTTGGAATTTCTCAAACT+TGG + Chr1:79928555-79928574 None:intergenic 35.0%
ATACTATGCAGAGTTAACCA+TGG + Chr1:79930954-79930973 None:intergenic 35.0%
CAATATCTTCAGTATCAGGA+CGG + Chr1:79931235-79931254 None:intergenic 35.0%
CTATAATGCAGAGTTAACCA+TGG + Chr1:79930924-79930943 None:intergenic 35.0%
CTATCTGAAAATTAGGAGCA+AGG + Chr1:79930894-79930913 None:intergenic 35.0%
GAAAATTGAGGATGGGAAAA+TGG + Chr1:79928476-79928495 None:intergenic 35.0%
GAAACTAAATGTCAGGTTAG+TGG - Chr1:79928991-79929010 MsG0180004580.01.T01:intron 35.0%
GAAGTAGTTGGAACATACAA+TGG + Chr1:79928807-79928826 None:intergenic 35.0%
GACAATTATAAAGGAACGGA+GGG - Chr1:79929389-79929408 MsG0180004580.01.T01:intron 35.0%
GAGCTCTGTTCTATCTTTAA+CGG - Chr1:79929929-79929948 MsG0180004580.01.T01:intron 35.0%
GATATAATGTACGGCAGTTA+AGG - Chr1:79930341-79930360 MsG0180004580.01.T01:intron 35.0%
GTAGTAGTAGTAATACCTGT+CGG + Chr1:79928639-79928658 None:intergenic 35.0%
TATCAAAACACAAGAATGCG+TGG + Chr1:79930229-79930248 None:intergenic 35.0%
TATGTTGCGCAGATGTTATT+TGG - Chr1:79931410-79931429 MsG0180004580.01.T01:CDS 35.0%
TCCATTGGAAAATTGAGGAT+GGG + Chr1:79928483-79928502 None:intergenic 35.0%
TCCTGATACTGAAGATATTG+AGG - Chr1:79931235-79931254 MsG0180004580.01.T01:intron 35.0%
TGACAATTATAAAGGAACGG+AGG - Chr1:79929388-79929407 MsG0180004580.01.T01:intron 35.0%
TGCAGTAATACAATCAAGTC+AGG - Chr1:79928746-79928765 MsG0180004580.01.T01:intron 35.0%
TTACTCTGACAAAATAGCTG+CGG - Chr1:79929628-79929647 MsG0180004580.01.T01:intron 35.0%
TTCCATTGGAAAATTGAGGA+TGG + Chr1:79928484-79928503 None:intergenic 35.0%
! AATTCCATCAAGTTGTCACA+TGG + Chr1:79930001-79930020 None:intergenic 35.0%
! GCCATAAGTAAAACCACTTT+TGG - Chr1:79930997-79931016 MsG0180004580.01.T01:CDS 35.0%
!! AATGATAGTTTCTAGTGAGG+AGG + Chr1:79928597-79928616 None:intergenic 35.0%
!! AGCAAATTTGCTAGATCACT+TGG - Chr1:79931374-79931393 MsG0180004580.01.T01:CDS 35.0%
!! CTGCAGCTCTTCTAAAATAT+CGG - Chr1:79929530-79929549 MsG0180004580.01.T01:intron 35.0%
!! TCTTTTGGAAAGAAATGGCT+TGG + Chr1:79930394-79930413 None:intergenic 35.0%
!!! ATTGTCTGGTTTTCAGATTG+TGG - Chr1:79931147-79931166 MsG0180004580.01.T01:CDS 35.0%
AACAGAGCTCAGAGATTTAC+TGG + Chr1:79929919-79929938 None:intergenic 40.0%
AAGATAAAGACGAAACCGAC+AGG - Chr1:79928621-79928640 MsG0180004581.01.T01:intron 40.0%
AAGCTTTCGATCACTTAAGC+TGG + Chr1:79929806-79929825 None:intergenic 40.0%
AATACTGCACCAAATGGCAT+AGG + Chr1:79930802-79930821 None:intergenic 40.0%
CCAACAATGTGCGAATTTCA+CGG + Chr1:79931042-79931061 None:intergenic 40.0%
CTCCTGAAGATACAATGATG+CGG + Chr1:79928775-79928794 None:intergenic 40.0%
CTCGAATTCTTAGACGATGA+AGG - Chr1:79928913-79928932 MsG0180004580.01.T01:intron 40.0%
GCATCATTGTATCTTCAGGA+GGG - Chr1:79928774-79928793 MsG0180004580.01.T01:intron 40.0%
GCCAAGTTTGAGAAATTCCA+AGG - Chr1:79928551-79928570 MsG0180004581.01.T01:intron 40.0%
TACCGCATCATTGTATCTTC+AGG - Chr1:79928770-79928789 MsG0180004580.01.T01:intron 40.0%
TCGGGGTTGGATATAATGTA+CGG - Chr1:79930332-79930351 MsG0180004580.01.T01:intron 40.0%
TGATCGAAAGCTTGTAGTAG+TGG - Chr1:79929813-79929832 MsG0180004580.01.T01:intron 40.0%
TGCATTATAGTCTGCATCCA+TGG - Chr1:79930934-79930953 MsG0180004580.01.T01:CDS 40.0%
TGTTCAGTGATGACAAGGAT+AGG - Chr1:79931174-79931193 MsG0180004580.01.T01:CDS 40.0%
TTTCAGATAGTCTGCATCCA+TGG - Chr1:79930904-79930923 MsG0180004580.01.T01:CDS 40.0%
! CAAATGCACGTTTGTCGTTT+GGG - Chr1:79930440-79930459 MsG0180004580.01.T01:intron 40.0%
! GGAATTGTCAAGGCTTTTCT+TGG - Chr1:79928954-79928973 MsG0180004580.01.T01:intron 40.0%
! TCCCATCCTCAATTTTCCAA+TGG - Chr1:79928479-79928498 MsG0180004581.01.T01:CDS 40.0%
! TTGTAGTAGTGGTGATGAGA+TGG - Chr1:79929824-79929843 MsG0180004580.01.T01:intron 40.0%
!! ATGCCATTTGGTGCAGTATT+CGG - Chr1:79930802-79930821 MsG0180004580.01.T01:intron 40.0%
!! ATTCGGTGTTATCCAGAGTA+AGG - Chr1:79930819-79930838 MsG0180004580.01.T01:intron 40.0%
!! CAGCTCTTCTAAAATATCGG+TGG - Chr1:79929533-79929552 MsG0180004580.01.T01:intron 40.0%
!! GAAAGTGTTCAGTGATGACA+AGG - Chr1:79931169-79931188 MsG0180004580.01.T01:CDS 40.0%
!! TCGTCTAAGAATTCGAGTTG+AGG + Chr1:79928910-79928929 None:intergenic 40.0%
!!! GCTTGTTTTTGGGTGATCTA+GGG + Chr1:79930979-79930998 None:intergenic 40.0%
AAAGCCGTATTTCCAGATGC+CGG - Chr1:79929505-79929524 MsG0180004580.01.T01:intron 45.0%
AACAGACTTTGTCCTTGCTC+TGG + Chr1:79931455-79931474 None:intergenic 45.0%
AAGGAACGGAGGGAGTAATT+TGG - Chr1:79929399-79929418 MsG0180004580.01.T01:intron 45.0%
ACACCGAATACTGCACCAAA+TGG + Chr1:79930808-79930827 None:intergenic 45.0%
ACAGCCATGTGACAACTTGA+TGG - Chr1:79929994-79930013 MsG0180004580.01.T01:intron 45.0%
ATCAGGGCCTCCAATTTGAT+TGG + Chr1:79929031-79929050 None:intergenic 45.0%
ATCCTTATGGGAGGGGAAAA+AGG + Chr1:79930845-79930864 None:intergenic 45.0%
ATCTTCAGTATCAGGACGGT+TGG + Chr1:79931231-79931250 None:intergenic 45.0%
ATTACTGCACCTTCCAAGTC+TGG + Chr1:79928735-79928754 None:intergenic 45.0%
CAGTTGTTTACCTCCAGACT+TGG - Chr1:79928719-79928738 MsG0180004580.01.T01:CDS 45.0%
CATATGCGACCTATGCCATT+TGG - Chr1:79930790-79930809 MsG0180004580.01.T01:intron 45.0%
CCGTGAAATTCGCACATTGT+TGG - Chr1:79931039-79931058 MsG0180004580.01.T01:intron 45.0%
CCTGTATAGCAAAGATGTCG+GGG - Chr1:79930315-79930334 MsG0180004580.01.T01:intron 45.0%
CGCATCATTGTATCTTCAGG+AGG - Chr1:79928773-79928792 MsG0180004580.01.T01:intron 45.0%
CGCCTGTATAGCAAAGATGT+CGG - Chr1:79930313-79930332 MsG0180004580.01.T01:intron 45.0%
CGTCATCCCAATCAAATTGG+AGG - Chr1:79929021-79929040 MsG0180004580.01.T01:intron 45.0%
CGTGGATTCCACATGATAAG+GGG + Chr1:79930295-79930314 None:intergenic 45.0%
CTGCGTCATCCCAATCAAAT+TGG - Chr1:79929018-79929037 MsG0180004580.01.T01:intron 45.0%
GAAGAACAGAAACCAGAGCA+AGG - Chr1:79931440-79931459 MsG0180004581.01.T01:CDS 45.0%
GCAAATGCACGTTTGTCGTT+TGG - Chr1:79930439-79930458 MsG0180004580.01.T01:intron 45.0%
GCCTGTATAGCAAAGATGTC+GGG - Chr1:79930314-79930333 MsG0180004580.01.T01:intron 45.0%
GCGAAGGGAAATTCTTCCAT+TGG + Chr1:79928498-79928517 None:intergenic 45.0%
GCGTGGATTCCACATGATAA+GGG + Chr1:79930296-79930315 None:intergenic 45.0%
TATAGCAAAGATGTCGGGGT+TGG - Chr1:79930319-79930338 MsG0180004580.01.T01:intron 45.0%
TCAGGGCCTCCAATTTGATT+GGG + Chr1:79929030-79929049 None:intergenic 45.0%
TGAGGATGGGAAAATGGAGT+GGG + Chr1:79928470-79928489 None:intergenic 45.0%
TGTTTACCTCCAGACTTGGA+AGG - Chr1:79928723-79928742 MsG0180004580.01.T01:CDS 45.0%
TTGAGGATGGGAAAATGGAG+TGG + Chr1:79928471-79928490 None:intergenic 45.0%
! ACATCTTTGCTATACAGGCG+TGG + Chr1:79930313-79930332 None:intergenic 45.0%
! TAGTAGTGGTGATGAGATGG+TGG - Chr1:79929827-79929846 MsG0180004580.01.T01:intron 45.0%
!! AGAGTGTTGTTGAGTGGAAC+TGG + Chr1:79928433-79928452 None:intergenic 45.0%
!! GTTTCTAGTGAGGAGGATGA+AGG + Chr1:79928590-79928609 None:intergenic 45.0%
!! TTTTAGAAGAGCTGCAGCAC+CGG + Chr1:79929527-79929546 None:intergenic 45.0%
!!! GGCTTGTTTTTGGGTGATCT+AGG + Chr1:79930980-79930999 None:intergenic 45.0%
AAACTTGGCGCCAAGTTTGG+AGG + Chr1:79928540-79928559 None:intergenic 50.0%
AGGGGAAAAAGGCCTTACTC+TGG + Chr1:79930834-79930853 None:intergenic 50.0%
AGTCTGTTTGACAAAGCGGC+AGG - Chr1:79931467-79931486 MsG0180004581.01.T01:CDS 50.0%
ATGGGAAAATGGAGTGGGTG+AGG + Chr1:79928465-79928484 None:intergenic 50.0%
CTCAAACTTGGCGCCAAGTT+TGG + Chr1:79928543-79928562 None:intergenic 50.0%
CTGGACAGATTGCATCAGCA+TGG + Chr1:79929710-79929729 None:intergenic 50.0%
GGCGTGGATTCCACATGATA+AGG + Chr1:79930297-79930316 None:intergenic 50.0%
TCTAGTGAGGAGGATGAAGG+AGG + Chr1:79928587-79928606 None:intergenic 50.0%
TGGGAAAATGGAGTGGGTGA+GGG + Chr1:79928464-79928483 None:intergenic 50.0%
TTCCACATGATAAGGGGCCT+TGG + Chr1:79930289-79930308 None:intergenic 50.0%
! AAGGAGGTTCAGGTTCACCT+TGG + Chr1:79928571-79928590 None:intergenic 50.0%
! CCCCGACATCTTTGCTATAC+AGG + Chr1:79930318-79930337 None:intergenic 50.0%
! TGCACGTTTGTCGTTTGGGT+AGG - Chr1:79930444-79930463 MsG0180004580.01.T01:intron 50.0%
!! AGCACCGGCATCTGGAAATA+CGG + Chr1:79929512-79929531 None:intergenic 50.0%
!! AGGGTGAGAGTGTTGTTGAG+TGG + Chr1:79928439-79928458 None:intergenic 50.0%
!! TGGAGCTCTGGGAATTGTCA+AGG - Chr1:79928944-79928963 MsG0180004580.01.T01:intron 50.0%
AAATGGAGTGGGTGAGGGTG+AGG + Chr1:79928459-79928478 None:intergenic 55.0%
AAGTTTGGAGGTGGAGGTGG+AGG + Chr1:79928528-79928547 None:intergenic 55.0%
AATGGAGTGGGTGAGGGTGA+GGG + Chr1:79928458-79928477 None:intergenic 55.0%
ACTGCACCTTCCAAGTCTGG+AGG + Chr1:79928732-79928751 None:intergenic 55.0%
AGCCAAGGCCCCTTATCATG+TGG - Chr1:79930284-79930303 MsG0180004580.01.T01:intron 55.0%
AGGTGGAGGTTGAAGAGCGA+AGG + Chr1:79928514-79928533 None:intergenic 55.0%
GAGGAGGATGAAGGAGGTTC+AGG + Chr1:79928581-79928600 None:intergenic 55.0%
GGTGGAGGTTGAAGAGCGAA+GGG + Chr1:79928513-79928532 None:intergenic 55.0%
TCCACCTCCACCTCCAAACT+TGG - Chr1:79928527-79928546 MsG0180004581.01.T01:intron 55.0%
! AGACGATGAAGGCGCACAGT+TGG - Chr1:79928924-79928943 MsG0180004580.01.T01:intron 55.0%
! AGCGGCAGGCGTTTTCTCTT+CGG - Chr1:79931481-79931500 MsG0180004581.01.T01:CDS 55.0%
! GGCCTTTTTCCCCTCCCATA+AGG - Chr1:79930840-79930859 MsG0180004580.01.T01:CDS 55.0%
AAGGCGCACAGTTGGAGCTC+TGG - Chr1:79928932-79928951 MsG0180004580.01.T01:intron 60.0%
AGGCGCACAGTTGGAGCTCT+GGG - Chr1:79928933-79928952 MsG0180004580.01.T01:intron 60.0%
CTTGGCGCCAAGTTTGGAGG+TGG + Chr1:79928537-79928556 None:intergenic 60.0%
GCCAAGTTTGGAGGTGGAGG+TGG + Chr1:79928531-79928550 None:intergenic 60.0%
GGCGCCAAGTTTGGAGGTGG+AGG + Chr1:79928534-79928553 None:intergenic 65.0%
!! AGAGCTGCAGCACCGGCATC+TGG + Chr1:79929520-79929539 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 79928398 79931529 79928398 ID=MsG0180004581.01;
Chr1 mRNA 79928398 79931529 79928398 ID=MsG0180004581.01.T01;Parent=MsG0180004581.01
Chr1 CDS 79928398 79928505 79928398 ID=MsG0180004581.01.T01.cds;Parent=MsG0180004581.01.T01
Chr1 CDS 79928671 79928764 79928671 ID=MsG0180004581.01.T01.cds;Parent=MsG0180004581.01.T01
Chr1 CDS 79929550 79929603 79929550 ID=MsG0180004581.01.T01.cds;Parent=MsG0180004581.01.T01
Chr1 CDS 79930346 79930428 79930346 ID=MsG0180004581.01.T01.cds;Parent=MsG0180004581.01.T01
Chr1 CDS 79930922 79931035 79930922 ID=MsG0180004581.01.T01.cds;Parent=MsG0180004581.01.T01
Chr1 CDS 79931119 79931191 79931119 ID=MsG0180004581.01.T01.cds;Parent=MsG0180004581.01.T01
Chr1 CDS 79931285 79931529 79931285 ID=MsG0180004581.01.T01.cds;Parent=MsG0180004581.01.T01
Gene Sequence

>MsG0180004581.01.T01

ATGAGTTGTCGGAGCTTAACTTGCTGCAACATCCAGTTCCACTCAACAACACTCTCACCCTCACCCTCACCCACTCCATTTTCCCATCCTCAATTTTCCAATGGAAGAATTTCCCTTCGCTCTTCAACCTCCACCTCCACCTCCAAACTTGGCGCCAAGTTTGAGAAATTCCAAGGTGAACCTGAACCTCCTTCATCCTCCTCACTAGAAACTATCATTACACAAGATAAAGACGAAACCGACAGACTTGGAAGGTGCAGTAATACAATCAAGTCAGGCTACCGCATCATTGTATCTTCAGGAGGGATGAGAGCCATTGTTGAACTTTTAATTCCTCAACTCGAATTCTTAGACGATGAAGGCGCACAGTTGGAGCTCTGGGAATTGTCAAGGCTTTTCTTGGATACACTTATTCAAGAAACTAAATGTCAGAAAGTTAAAGCCGTATTTCCAGATGCCGGTGCTGCAGCTCTTCTAAAATATCGGTGGAAAGATGCTTTGTTTAGTTTTGCAAGCAAAGATGTCGGGGTTGGATATAATGTACGGCAGTTAAGGCAATACTTTTTAAGATTGTGGAAAGTGTTCAGTGATGACAAGGATAGGCCAAATAGATATTTGCTTGCAAAAGAATATGCCAACCGTCCTGATACTGAAGATATTGAGATGTTATTTGGCAACAACGAAGAACAGAAACCAGAGCAAGGACAAAGTCTGTTTGACAAAGCGGCAGGCGTTTTCTCTTCGGTTAACCGTTTCATGAAGTCTATGTGA

Protein sequence

>MsG0180004581.01.T01

MSCRSLTCCNIQFHSTTLSPSPSPTPFSHPQFSNGRISLRSSTSTSTSKLGAKFEKFQGEPEPPSSSSLETIITQDKDETDRLGRCSNTIKSGYRIIVSSGGMRAIVELLIPQLEFLDDEGAQLELWELSRLFLDTLIQETKCQKVKAVFPDAGAAALLKYRWKDALFSFASKDVGVGYNVRQLRQYFLRLWKVFSDDKDRPNRYLLAKEYANRPDTEDIEMLFGNNEEQKPEQGQSLFDKAAGVFSSVNRFMKSM*