AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480023211.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023211.01.T01 MTR_8g089550 88.772 285 21 3 18 302 1 274 0.0 502
MsG0480023211.01.T01 MTR_8g089550 86.802 197 16 2 18 214 1 187 5.37e-117 337
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480023211.01.T01 AT3G26085 59.350 246 86 4 62 300 29 267 1.87e-95 283
MsG0480023211.01.T01 AT3G26085 59.592 245 85 4 62 299 50 287 3.94e-95 283
MsG0480023211.01.T01 AT3G26085 59.592 245 85 4 62 299 79 316 8.96e-95 283
MsG0480023211.01.T01 AT3G26085 59.592 245 85 4 62 299 70 307 1.21e-94 283

Find 68 sgRNAs with CRISPR-Local

Find 268 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTCCCTCTTGGATTTCT+TGG 0.137206 4:-82211370 None:intergenic
CTGGTCTCATTGCTGCTTTC+GGG 0.149947 4:+82211532 MsG0480023211.01.T01:CDS
CGGCACAGTTCTGCCACTTT+TGG 0.165221 4:+82214638 MsG0480023211.01.T01:CDS
TGTTCAAAATGACAACTTAT+TGG 0.182949 4:+82211428 MsG0480023211.01.T01:CDS
TCTGGTCTCATTGCTGCTTT+CGG 0.246146 4:+82211531 MsG0480023211.01.T01:CDS
TAATGAAATCTGCAACGTTT+TGG 0.256473 4:-82210832 None:intergenic
ACCTTTGTTGGTCTTGTATA+CGG 0.257492 4:+82214904 MsG0480023211.01.T01:CDS
CATCTAAGTTACCTGTCTAT+TGG 0.300999 4:-82212799 None:intergenic
GTAGCTGCTGCTTTAATCTT+TGG 0.304063 4:+82214684 MsG0480023211.01.T01:CDS
CCTTAGCTCTCTCCAACCTT+TGG 0.311835 4:+82214471 MsG0480023211.01.T01:CDS
TAATTTGCATGACATAGTTT+TGG 0.319065 4:-82215259 None:intergenic
CAAGCTTGCATACTGACTTC+TGG 0.334409 4:+82211513 MsG0480023211.01.T01:CDS
GCCATAAAAGCCCTCCTATC+AGG 0.343970 4:-82214987 None:intergenic
AGCTTGAAGCACAGCACTCC+TGG 0.355918 4:-82211496 None:intergenic
TGTTTCAGGGCAACCTTTGT+TGG 0.366022 4:+82214892 MsG0480023211.01.T01:intron
ATGCTAACCCTATTCCTTCC+AGG 0.372799 4:+82211478 MsG0480023211.01.T01:CDS
ACAGCACTCCTGGAAGGAAT+AGG 0.375154 4:-82211486 None:intergenic
TCTCGCACACTCTCAATTCC+TGG 0.384312 4:+82210935 MsG0480023211.01.T01:CDS
ACATTTGCAAACAGATCTCT+TGG 0.391180 4:-82215145 None:intergenic
GAAACTATTCCTTTGCCATC+TGG 0.393537 4:+82214730 MsG0480023211.01.T01:CDS
TGGCATCTTGAGATGATTAC+AGG 0.394200 4:+82212699 MsG0480023211.01.T01:CDS
TGTATCAGGTCCTTCCCTCT+TGG 0.395014 4:-82211379 None:intergenic
CAACCTCCCCGTCGATGGTT+TGG 0.404936 4:+82215089 MsG0480023211.01.T01:three_prime_UTR
AATAGAAGGATTGCCGGTCT+TGG 0.411237 4:+82211882 MsG0480023211.01.T01:CDS
TCTCATGTTGCGTCAATAGA+AGG 0.415124 4:+82211868 MsG0480023211.01.T01:CDS
TGGTGTTATATAGTATGATT+CGG 0.432403 4:+82215109 MsG0480023211.01.T01:three_prime_UTR
TGCGTCAATAGAAGGATTGC+CGG 0.432824 4:+82211876 MsG0480023211.01.T01:CDS
TCAAAACAACTGCATATAAG+AGG 0.434865 4:-82212672 None:intergenic
CAGCACTCCTGGAAGGAATA+GGG 0.442213 4:-82211485 None:intergenic
CATGCAGTGAACAACCTGAT+AGG 0.453687 4:+82214973 MsG0480023211.01.T01:CDS
CTCTAGCCTTGCAGTTCCCA+TGG 0.454900 4:+82214945 MsG0480023211.01.T01:CDS
TCACTAGACTCAGCAAAATC+CGG 0.479458 4:-82212771 None:intergenic
GAGAGATCTACAGATGTATC+AGG 0.496866 4:-82211393 None:intergenic
GTCCAGTTCATTCCCAAAAG+TGG 0.502847 4:-82214651 None:intergenic
GCTATTTGCTATTGAAGACT+TGG 0.510606 4:+82212748 MsG0480023211.01.T01:CDS
CGGCAATATAATCCAAAGGT+TGG 0.521359 4:-82214483 None:intergenic
TAGTGAAGCAGCCAATAGAC+AGG 0.526883 4:+82212788 MsG0480023211.01.T01:CDS
GTTCACTGCATGAGAAGCCA+TGG 0.542051 4:-82214962 None:intergenic
GGGTTAGCATTCTCAACAAG+TGG 0.542305 4:-82211465 None:intergenic
TTTCGGGACAGTGATTCGCC+AGG 0.545417 4:+82211548 MsG0480023211.01.T01:CDS
TTTGCTATTGAAGACTTGGC+CGG 0.547509 4:+82212752 MsG0480023211.01.T01:CDS
TATAACACCAAACCATCGAC+GGG 0.552029 4:-82215096 None:intergenic
TCTGTAGAGCAGTCCAAGAC+CGG 0.556859 4:-82211895 None:intergenic
GCAGTGAACAACCTGATAGG+AGG 0.562292 4:+82214976 MsG0480023211.01.T01:CDS
TAGCGAGTTATCTATTGAGA+TGG 0.563810 4:-82215053 None:intergenic
ACTGTGAGGGAGAGTGATGA+AGG 0.564456 4:-82211001 None:intergenic
GCCAAGAAATCCAAGAGGGA+AGG 0.567102 4:+82211369 MsG0480023211.01.T01:CDS
TTATTCAACCTCCCCGTCGA+TGG 0.567907 4:+82215084 MsG0480023211.01.T01:three_prime_UTR
TAGTATCATTCATTCATACA+TGG 0.590058 4:+82210900 MsG0480023211.01.T01:CDS
ATATAACACCAAACCATCGA+CGG 0.593251 4:-82215097 None:intergenic
AGTTATCTATTGAGATGGAA+TGG 0.593522 4:-82215048 None:intergenic
GATAGTACTACAGCAACTCC+AGG 0.598640 4:-82210953 None:intergenic
CCAAAGGTTGGAGAGAGCTA+AGG 0.600412 4:-82214471 None:intergenic
TGAAGCACAGCACTCCTGGA+AGG 0.602584 4:-82211492 None:intergenic
CAGTGAACAACCTGATAGGA+GGG 0.604035 4:+82214977 MsG0480023211.01.T01:CDS
TCCGTATACAAGACCAACAA+AGG 0.604699 4:-82214905 None:intergenic
GTGTGATTAACTAACTGTGA+GGG 0.617765 4:-82211014 None:intergenic
CATGGGAACTGCAAGGCTAG+AGG 0.618400 4:-82214944 None:intergenic
TTCACTGCATGAGAAGCCAT+GGG 0.629050 4:-82214961 None:intergenic
GGACATGCACCAGATGGCAA+AGG 0.641457 4:-82214739 None:intergenic
AATTCCAGGCAAAACTGCAA+CGG 0.649711 4:-82214503 None:intergenic
GAGAAGCCATGGGAACTGCA+AGG 0.658768 4:-82214951 None:intergenic
AATGAACTGGACGAGTATTG+CGG 0.660794 4:+82214662 MsG0480023211.01.T01:CDS
GCAACGGCAATATAATCCAA+AGG 0.664800 4:-82214487 None:intergenic
AGTGTGCGAGAGATAAAGCA+CGG 0.676363 4:-82210923 None:intergenic
ACACCAAACCATCGACGGGG+AGG 0.680884 4:-82215092 None:intergenic
AAAGTGGCAGAACTGTGCCG+CGG 0.726025 4:-82214635 None:intergenic
ATAACACCAAACCATCGACG+GGG 0.793589 4:-82215095 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTATA+GGG + Chr4:82211322-82211341 MsG0480023211.01.T01:intron 0.0%
!!! TTTTTTTTTTTTTTTTTTAT+AGG + Chr4:82211321-82211340 MsG0480023211.01.T01:intron 0.0%
!! ATAAAAATAGAAATTAAAGA+AGG - Chr4:82211046-82211065 None:intergenic 10.0%
!!! AAATTTTAGTTATCTATTTA+TGG - Chr4:82215289-82215308 None:intergenic 10.0%
!! AAAAAAAAATCAATTTCACT+AGG - Chr4:82211308-82211327 None:intergenic 15.0%
!! AAGTTATTATCAAAAGTTTA+TGG + Chr4:82211191-82211210 MsG0480023211.01.T01:intron 15.0%
!! AGTTATTATCAAAAGTTTAT+GGG + Chr4:82211192-82211211 MsG0480023211.01.T01:intron 15.0%
!! TAAAATATGAATGAATAGTT+TGG + Chr4:82214140-82214159 MsG0480023211.01.T01:intron 15.0%
!! TGATGAAAAATAAATAAGAA+CGG - Chr4:82214569-82214588 None:intergenic 15.0%
!! TTTGAATATTATATAGTAGA+TGG + Chr4:82214310-82214329 MsG0480023211.01.T01:intron 15.0%
!!! AATTATTATTAGAGTTTGTT+AGG - Chr4:82212979-82212998 None:intergenic 15.0%
!!! TTAGAAATTTCATGATTTTA+GGG - Chr4:82213051-82213070 None:intergenic 15.0%
!! AATAGACAATACAATAGAAT+TGG - Chr4:82211611-82211630 None:intergenic 20.0%
!! AATTATTAAGAACATTTCAG+AGG - Chr4:82212204-82212223 None:intergenic 20.0%
!! ACCAATGAATAAGAAATAAA+AGG - Chr4:82213430-82213449 None:intergenic 20.0%
!! ATGCTATGATATATTTATTG+TGG + Chr4:82212239-82212258 MsG0480023211.01.T01:intron 20.0%
!! ATTCATAGAAAATTGAATCA+CGG + Chr4:82213696-82213715 MsG0480023211.01.T01:intron 20.0%
!! CAATAAACATACATTTCATT+TGG + Chr4:82211653-82211672 MsG0480023211.01.T01:intron 20.0%
!! CATATTATTGTTATGTTTCA+GGG + Chr4:82214879-82214898 MsG0480023211.01.T01:intron 20.0%
!! TAACAAAAAATTAGATCACT+TGG + Chr4:82215310-82215329 MsG0480023211.01.T01:three_prime_UTR 20.0%
!! TAATATGATTCTAATAGATC+AGG - Chr4:82214866-82214885 None:intergenic 20.0%
!! TCATATTATTGTTATGTTTC+AGG + Chr4:82214878-82214897 MsG0480023211.01.T01:intron 20.0%
!! TGCTATGATATATTTATTGT+GGG + Chr4:82212240-82212259 MsG0480023211.01.T01:intron 20.0%
!!! AATATTTTGTTTTCCAAATC+AGG + Chr4:82214447-82214466 MsG0480023211.01.T01:intron 20.0%
!!! AATCCAATTTTCAGAAATTA+GGG - Chr4:82214763-82214782 None:intergenic 20.0%
!!! ATATTTCACAGTTGATTTTA+TGG - Chr4:82212829-82212848 None:intergenic 20.0%
!!! ATCTATTAAGGTTAGTTATT+GGG + Chr4:82213085-82213104 MsG0480023211.01.T01:intron 20.0%
!!! ATGTTGTACTTTTAAGTTTA+TGG - Chr4:82212179-82212198 None:intergenic 20.0%
!!! CCATTTTTAAGATAAAATGT+AGG + Chr4:82215195-82215214 MsG0480023211.01.T01:three_prime_UTR 20.0%
!!! CCTACATTTTATCTTAAAAA+TGG - Chr4:82215198-82215217 None:intergenic 20.0%
!!! GTTAGAAATTTCATGATTTT+AGG - Chr4:82213052-82213071 None:intergenic 20.0%
!!! TCCTTTTATTTCTTATTCAT+TGG + Chr4:82213426-82213445 MsG0480023211.01.T01:intron 20.0%
!!! TCTGAAATGTTCTTAATAAT+TGG + Chr4:82212203-82212222 MsG0480023211.01.T01:intron 20.0%
! AAAAAATTAGATCACTTGGT+TGG + Chr4:82215314-82215333 MsG0480023211.01.T01:three_prime_UTR 25.0%
! AACAACACAACAATGAAAAA+TGG - Chr4:82214841-82214860 None:intergenic 25.0%
! AACGAAACTAGAAATAATTC+CGG + Chr4:82214362-82214381 MsG0480023211.01.T01:intron 25.0%
! AATACATTAGAAGTCAATTC+AGG - Chr4:82212339-82212358 None:intergenic 25.0%
! ACTATTTCAGTATATTAGCA+AGG + Chr4:82211687-82211706 MsG0480023211.01.T01:intron 25.0%
! ACTCATCAATTCAAAACAAA+AGG + Chr4:82213771-82213790 MsG0480023211.01.T01:intron 25.0%
! ATAAGAAATAAAAGGAAGTG+AGG - Chr4:82213422-82213441 None:intergenic 25.0%
! ATGTGAGTTTCAGATTTAAA+AGG - Chr4:82213248-82213267 None:intergenic 25.0%
! CAGAGTTTAGAAAACAAAAA+TGG - Chr4:82214425-82214444 None:intergenic 25.0%
! CTAACCTTAATAGATGAAAT+AGG - Chr4:82213080-82213099 None:intergenic 25.0%
! GTGAAAATTATTGAACATGA+AGG + Chr4:82212130-82212149 MsG0480023211.01.T01:intron 25.0%
! TAAAACAGATTTACTCTTCT+TGG + Chr4:82214534-82214553 MsG0480023211.01.T01:intron 25.0%
! TACAGAAGCTATAACAAAAT+TGG - Chr4:82212425-82212444 None:intergenic 25.0%
! TACTGAAATAGTTTCTATGA+TGG - Chr4:82211679-82211698 None:intergenic 25.0%
! TAGTATCATTCATTCATACA+TGG + Chr4:82210900-82210919 MsG0480023211.01.T01:CDS 25.0%
! TATAATTCTGTAATCACCAT+TGG - Chr4:82212566-82212585 None:intergenic 25.0%
! TCAAAGATAAAACACTTACT+CGG - Chr4:82213598-82213617 None:intergenic 25.0%
! TGTTCAAAATGACAACTTAT+TGG + Chr4:82211428-82211447 MsG0480023211.01.T01:CDS 25.0%
!! ACTTTTCTGTTATAAAAGAG+AGG - Chr4:82213027-82213046 None:intergenic 25.0%
!! CAATCCAATTTTCAGAAATT+AGG - Chr4:82214764-82214783 None:intergenic 25.0%
!! CATCTATTAAGGTTAGTTAT+TGG + Chr4:82213084-82213103 MsG0480023211.01.T01:intron 25.0%
!! CTTTTCTGTTATAAAAGAGA+GGG - Chr4:82213026-82213045 None:intergenic 25.0%
!!! ATTCAATAAGTGCTACTTTA+TGG - Chr4:82214119-82214138 None:intergenic 25.0%
!!! TAATTTGCATGACATAGTTT+TGG - Chr4:82215262-82215281 None:intergenic 25.0%
!!! TGGTGTTATATAGTATGATT+CGG + Chr4:82215109-82215128 MsG0480023211.01.T01:three_prime_UTR 25.0%
!!! TGTACTTTTAAGTTTATGGT+TGG - Chr4:82212175-82212194 None:intergenic 25.0%
!!! TTAAGTTGAATTACATGACA+CGG - Chr4:82211074-82211093 None:intergenic 25.0%
!!! TTTTAAATCTGAAACTCACA+TGG + Chr4:82213247-82213266 MsG0480023211.01.T01:intron 25.0%
AAAGAACCAAAACTAACTGA+TGG - Chr4:82213520-82213539 None:intergenic 30.0%
AAAGCTTTCGTTACCATTAA+CGG + Chr4:82213913-82213932 MsG0480023211.01.T01:intron 30.0%
AAATGCAACAAAGTTGGAAA+CGG - Chr4:82211586-82211605 None:intergenic 30.0%
AACTAAGCCTAACTAACTTT+GGG - Chr4:82212388-82212407 None:intergenic 30.0%
ACAATTACCTTAGGTTTAAG+AGG - Chr4:82213343-82213362 None:intergenic 30.0%
AGTTATCTATTGAGATGGAA+TGG - Chr4:82215051-82215070 None:intergenic 30.0%
ATCCAAACTATCTTGTATTC+TGG + Chr4:82212293-82212312 MsG0480023211.01.T01:intron 30.0%
ATTTAGTAACTCGTAACTGT+TGG - Chr4:82214173-82214192 None:intergenic 30.0%
CAAGTAGTAGAATCTGAAAA+GGG + Chr4:82213287-82213306 MsG0480023211.01.T01:intron 30.0%
CTACTCATAACAATTACCTT+AGG - Chr4:82213352-82213371 None:intergenic 30.0%
GACTCCTATTTCATCTATTA+AGG + Chr4:82213073-82213092 MsG0480023211.01.T01:intron 30.0%
TAAACATTGTCTCAAACATG+TGG + Chr4:82212028-82212047 MsG0480023211.01.T01:intron 30.0%
TACAGTTAACAGAGAAAACT+GGG - Chr4:82213482-82213501 None:intergenic 30.0%
TAGTTAGTATTTGCAAGCTT+CGG + Chr4:82213620-82213639 MsG0480023211.01.T01:intron 30.0%
TATTGTTCCCAAAGTTAGTT+AGG + Chr4:82212378-82212397 MsG0480023211.01.T01:intron 30.0%
TCAAAACAACTGCATATAAG+AGG - Chr4:82212675-82212694 None:intergenic 30.0%
TCTATGAATTCTCGTGAAAT+AGG - Chr4:82213685-82213704 None:intergenic 30.0%
TGCACAAGACATTAAAATGA+CGG + Chr4:82213815-82213834 MsG0480023211.01.T01:intron 30.0%
TGTTCTTAATAATTGGTGTG+AGG + Chr4:82212210-82212229 MsG0480023211.01.T01:intron 30.0%
TTACAGTTAACAGAGAAAAC+TGG - Chr4:82213483-82213502 None:intergenic 30.0%
TTGGAAAAATGCAACAAAGT+TGG - Chr4:82211592-82211611 None:intergenic 30.0%
TTTAGTAACTCGTAACTGTT+GGG - Chr4:82214172-82214191 None:intergenic 30.0%
! AATGAAATCTGCAACGTTTT+GGG - Chr4:82210834-82210853 None:intergenic 30.0%
! TAAGTTGAATTACATGACAC+GGG - Chr4:82211073-82211092 None:intergenic 30.0%
! TAATGAAATCTGCAACGTTT+TGG - Chr4:82210835-82210854 None:intergenic 30.0%
! TGAAATGCACATGACAATTT+TGG + Chr4:82212087-82212106 MsG0480023211.01.T01:intron 30.0%
! TGTCCCTAATTTCTGAAAAT+TGG + Chr4:82214757-82214776 MsG0480023211.01.T01:intron 30.0%
!! GACAATTTTGGATTTTCAAG+TGG + Chr4:82212099-82212118 MsG0480023211.01.T01:intron 30.0%
!!! ATCTTGTTTTTACAACTTGC+AGG + Chr4:82211843-82211862 MsG0480023211.01.T01:intron 30.0%
!!! TATGATAGAACACTGGTTTT+TGG - Chr4:82213117-82213136 None:intergenic 30.0%
!!! TATGCAGTTGTTTTGAAATG+TGG + Chr4:82212679-82212698 MsG0480023211.01.T01:CDS 30.0%
AACTTGCAAAACAGAAAAGC+AGG - Chr4:82211952-82211971 None:intergenic 35.0%
AAGGAGAGTTAGTTGAATTC+AGG + Chr4:82211706-82211725 MsG0480023211.01.T01:intron 35.0%
AAGTTGAATTACATGACACG+GGG - Chr4:82211072-82211091 None:intergenic 35.0%
ACATTTGCAAACAGATCTCT+TGG - Chr4:82215148-82215167 None:intergenic 35.0%
ACCATAAAGCAATACTGTTG+TGG + Chr4:82212055-82212074 MsG0480023211.01.T01:intron 35.0%
AGTGTGATTAACTAACTGTG+AGG - Chr4:82211018-82211037 None:intergenic 35.0%
ATATAACACCAAACCATCGA+CGG - Chr4:82215100-82215119 None:intergenic 35.0%
CAAACTATCTTGTATTCTGG+TGG + Chr4:82212296-82212315 MsG0480023211.01.T01:intron 35.0%
CAATAGACAGGTAACTTAGA+TGG + Chr4:82212800-82212819 MsG0480023211.01.T01:intron 35.0%
CACCAGAATACAAGATAGTT+TGG - Chr4:82212298-82212317 None:intergenic 35.0%
CAGTGTTCTATCATAAGTGA+AGG + Chr4:82213122-82213141 MsG0480023211.01.T01:intron 35.0%
CATCTAAGTTACCTGTCTAT+TGG - Chr4:82212802-82212821 None:intergenic 35.0%
CCAAGCTTACACTATCTTAA+AGG - Chr4:82214261-82214280 None:intergenic 35.0%
CCAAGTAGTAGAATCTGAAA+AGG + Chr4:82213286-82213305 MsG0480023211.01.T01:intron 35.0%
CCATAAAGCAATACTGTTGT+GGG + Chr4:82212056-82212075 MsG0480023211.01.T01:intron 35.0%
CTGTTATAAAAGAGAGGGAA+GGG - Chr4:82213021-82213040 None:intergenic 35.0%
CTTCACTTATGATAGAACAC+TGG - Chr4:82213124-82213143 None:intergenic 35.0%
CTTGTGTATGCAAATTTCCA+CGG - Chr4:82211802-82211821 None:intergenic 35.0%
GAACTAAGCCTAACTAACTT+TGG - Chr4:82212389-82212408 None:intergenic 35.0%
GTGTGATTAACTAACTGTGA+GGG - Chr4:82211017-82211036 None:intergenic 35.0%
GTTACGAGTTACTAAATGCA+TGG + Chr4:82214176-82214195 MsG0480023211.01.T01:intron 35.0%
GTTGTGAGAAAAGTTATTGC+TGG - Chr4:82214388-82214407 None:intergenic 35.0%
TAAAACTGATGCCTTTGCTA+TGG + Chr4:82213569-82213588 MsG0480023211.01.T01:intron 35.0%
TAGCGAGTTATCTATTGAGA+TGG - Chr4:82215056-82215075 None:intergenic 35.0%
TAGTTAGGCTTAGTTCAGTT+AGG + Chr4:82212393-82212412 MsG0480023211.01.T01:intron 35.0%
TCTATCATAAGTGAAGGAAC+TGG + Chr4:82213128-82213147 MsG0480023211.01.T01:intron 35.0%
TCTGTTATAAAAGAGAGGGA+AGG - Chr4:82213022-82213041 None:intergenic 35.0%
TCTTGTGTAAAACCAAGCTT+TGG - Chr4:82211772-82211791 None:intergenic 35.0%
TTTGGCTGGCATTAAGAAAT+CGG - Chr4:82211754-82211773 None:intergenic 35.0%
! AAGCACTGTTGAATGAAGAT+TGG + Chr4:82213201-82213220 MsG0480023211.01.T01:intron 35.0%
! AAGCTTGGCATTGTTATTAG+CGG + Chr4:82214273-82214292 MsG0480023211.01.T01:intron 35.0%
! ATAACTGAGCTGATTTCTTG+TGG + Chr4:82212592-82212611 MsG0480023211.01.T01:intron 35.0%
! CCTTTTCAGATTCTACTACT+TGG - Chr4:82213289-82213308 None:intergenic 35.0%
! GCTATGAACTGATTCAGTTA+TGG - Chr4:82214227-82214246 None:intergenic 35.0%
! TAAATCTGAAACTCACATGG+TGG + Chr4:82213250-82213269 MsG0480023211.01.T01:intron 35.0%
! TAAGGTTAGTTATTGGGCTT+AGG + Chr4:82213091-82213110 MsG0480023211.01.T01:intron 35.0%
! TTTTGCCAAGAAATCCAAGA+GGG + Chr4:82211365-82211384 MsG0480023211.01.T01:CDS 35.0%
!! ACCTTTGTTGGTCTTGTATA+CGG + Chr4:82214904-82214923 MsG0480023211.01.T01:CDS 35.0%
!! CCTTTAAGATAGTGTAAGCT+TGG + Chr4:82214258-82214277 MsG0480023211.01.T01:intron 35.0%
!! GCTATTTGCTATTGAAGACT+TGG + Chr4:82212748-82212767 MsG0480023211.01.T01:CDS 35.0%
!! GTGAAATAGGAAGTGTTTGA+CGG - Chr4:82213672-82213691 None:intergenic 35.0%
!! GTTTTAACCTCACTAATTCC+AGG - Chr4:82214520-82214539 None:intergenic 35.0%
!!! ATCTTTGGTGTTTTGCACAT+AGG + Chr4:82214699-82214718 MsG0480023211.01.T01:CDS 35.0%
AACGAAAGCTTTCAAGCCAT+TGG - Chr4:82213905-82213924 None:intergenic 40.0%
AATTCCAGGCAAAACTGCAA+CGG - Chr4:82214506-82214525 None:intergenic 40.0%
ACCAAAACTAACTGATGGCT+CGG - Chr4:82213515-82213534 None:intergenic 40.0%
ACGAAAGCTTTCAAGCCATT+GGG - Chr4:82213904-82213923 None:intergenic 40.0%
ACTATCTTGTATTCTGGTGG+TGG + Chr4:82212299-82212318 MsG0480023211.01.T01:intron 40.0%
AGCCTCCAAAGGTAATTGTT+AGG - Chr4:82214062-82214081 None:intergenic 40.0%
ATCAGTCATGTCGTGTAACA+AGG + Chr4:82213732-82213751 MsG0480023211.01.T01:intron 40.0%
ATCCTACCATCTTGAATTCC+AGG + Chr4:82214602-82214621 MsG0480023211.01.T01:intron 40.0%
ATGAGCTTAGAGCTCTACAA+TGG + Chr4:82212870-82212889 MsG0480023211.01.T01:intron 40.0%
CACAGATCCTCTTAAACCTA+AGG + Chr4:82213333-82213352 MsG0480023211.01.T01:intron 40.0%
CATGGAGAGGATACGATAAA+AGG - Chr4:82214798-82214817 None:intergenic 40.0%
CCCACAACAGTATTGCTTTA+TGG - Chr4:82212059-82212078 None:intergenic 40.0%
CGGCAATATAATCCAAAGGT+TGG - Chr4:82214486-82214505 None:intergenic 40.0%
CGTTACCATTAACGGAAACT+GGG + Chr4:82213921-82213940 MsG0480023211.01.T01:intron 40.0%
CTATCTTGTATTCTGGTGGT+GGG + Chr4:82212300-82212319 MsG0480023211.01.T01:intron 40.0%
CTCCTAACAATTACCTTTGG+AGG + Chr4:82214057-82214076 MsG0480023211.01.T01:intron 40.0%
GAAACTATTCCTTTGCCATC+TGG + Chr4:82214730-82214749 MsG0480023211.01.T01:CDS 40.0%
GAGAGATCTACAGATGTATC+AGG - Chr4:82211396-82211415 None:intergenic 40.0%
GCAACGGCAATATAATCCAA+AGG - Chr4:82214490-82214509 None:intergenic 40.0%
GCACTCCTAACAATTACCTT+TGG + Chr4:82214054-82214073 MsG0480023211.01.T01:intron 40.0%
GTAGTTCCTGGAATTCAAGA+TGG - Chr4:82214611-82214630 None:intergenic 40.0%
TATAACACCAAACCATCGAC+GGG - Chr4:82215099-82215118 None:intergenic 40.0%
TCACTAGACTCAGCAAAATC+CGG - Chr4:82212774-82212793 None:intergenic 40.0%
TCCGTATACAAGACCAACAA+AGG - Chr4:82214908-82214927 None:intergenic 40.0%
TCGTTACCATTAACGGAAAC+TGG + Chr4:82213920-82213939 MsG0480023211.01.T01:intron 40.0%
TCTCATGTTGCGTCAATAGA+AGG + Chr4:82211868-82211887 MsG0480023211.01.T01:CDS 40.0%
TGAGAAAAGTTATTGCTGGC+CGG - Chr4:82214384-82214403 None:intergenic 40.0%
TGAGACAAGTGCATAAGAGA+AGG + Chr4:82213969-82213988 MsG0480023211.01.T01:intron 40.0%
TGCGTGAGAATCAATAATCG+TGG + Chr4:82214009-82214028 MsG0480023211.01.T01:intron 40.0%
TGGCATCTTGAGATGATTAC+AGG + Chr4:82212699-82212718 MsG0480023211.01.T01:CDS 40.0%
TTACACAAGATTGTTAGCCG+TGG + Chr4:82211782-82211801 MsG0480023211.01.T01:intron 40.0%
TTCAGATTCTACTACTTGGC+AGG - Chr4:82213285-82213304 None:intergenic 40.0%
TTCCTGGAATTCAAGATGGT+AGG - Chr4:82214607-82214626 None:intergenic 40.0%
TTGATGAGTGACTACAGTGT+TGG - Chr4:82213760-82213779 None:intergenic 40.0%
TTGTTAGGAGAGTTTCTCTC+TGG - Chr4:82212964-82212983 None:intergenic 40.0%
! AATGAACTGGACGAGTATTG+CGG + Chr4:82214662-82214681 MsG0480023211.01.T01:CDS 40.0%
! AGTTTTGCCTGGAATTAGTG+AGG + Chr4:82214510-82214529 MsG0480023211.01.T01:CDS 40.0%
! ATTACCTTTGGAGGCTTAAG+AGG + Chr4:82214066-82214085 MsG0480023211.01.T01:intron 40.0%
! CTTTTATCGTATCCTCTCCA+TGG + Chr4:82214796-82214815 MsG0480023211.01.T01:intron 40.0%
! CTTTTGCCAAGAAATCCAAG+AGG + Chr4:82211364-82211383 MsG0480023211.01.T01:CDS 40.0%
! TGCGTGAGAATTGATAATCG+TGG - Chr4:82213396-82213415 None:intergenic 40.0%
!! AAATAGGAAGTGTTTGACGG+AGG - Chr4:82213669-82213688 None:intergenic 40.0%
!! ACTTCTCTGAAGCTAACCAA+TGG + Chr4:82212547-82212566 MsG0480023211.01.T01:intron 40.0%
!! ATCTGAAAAGGGAGCATTGA+AGG + Chr4:82213298-82213317 MsG0480023211.01.T01:intron 40.0%
!! CAAAGTTGGAAACGGATTGA+AGG - Chr4:82211578-82211597 None:intergenic 40.0%
!! GTAGCTGCTGCTTTAATCTT+TGG + Chr4:82214684-82214703 MsG0480023211.01.T01:CDS 40.0%
!! TAAGAGCATTATGCTCTGGT+AGG - Chr4:82212940-82212959 None:intergenic 40.0%
!! TGGTTAAGAGCATTATGCTC+TGG - Chr4:82212944-82212963 None:intergenic 40.0%
!! TTTGCTATTGAAGACTTGGC+CGG + Chr4:82212752-82212771 MsG0480023211.01.T01:CDS 40.0%
!!! GGATTTTCAAGTGGTATCAC+AGG + Chr4:82212108-82212127 MsG0480023211.01.T01:intron 40.0%
!!! GTGGTTTTGGTTCTCTTCTT+GGG - Chr4:82213882-82213901 None:intergenic 40.0%
!!! TGGTTTTGGTTCTCTTCTTG+GGG - Chr4:82213881-82213900 None:intergenic 40.0%
AAAGCTTTCAAGCCATTGGG+TGG - Chr4:82213901-82213920 None:intergenic 45.0%
AATAGAAGGATTGCCGGTCT+TGG + Chr4:82211882-82211901 MsG0480023211.01.T01:CDS 45.0%
AATTAGGGACATGCACCAGA+TGG - Chr4:82214748-82214767 None:intergenic 45.0%
AGAGAACCAAAACCACCCAA+TGG + Chr4:82213886-82213905 MsG0480023211.01.T01:intron 45.0%
AGAGAGCTAAGGACCTGATT+TGG - Chr4:82214463-82214482 None:intergenic 45.0%
AGCTTAGAGCTCTACAATGG+TGG + Chr4:82212873-82212892 MsG0480023211.01.T01:intron 45.0%
AGTGCATAAGAGAAGGAAGC+AGG + Chr4:82213976-82213995 MsG0480023211.01.T01:intron 45.0%
AGTGTGCGAGAGATAAAGCA+CGG - Chr4:82210926-82210945 None:intergenic 45.0%
ATAACACCAAACCATCGACG+GGG - Chr4:82215098-82215117 None:intergenic 45.0%
ATGCTAACCCTATTCCTTCC+AGG + Chr4:82211478-82211497 MsG0480023211.01.T01:CDS 45.0%
CAGTGAACAACCTGATAGGA+GGG + Chr4:82214977-82214996 MsG0480023211.01.T01:CDS 45.0%
CATGCAGTGAACAACCTGAT+AGG + Chr4:82214973-82214992 MsG0480023211.01.T01:CDS 45.0%
GATAGTACTACAGCAACTCC+AGG - Chr4:82210956-82210975 None:intergenic 45.0%
GCTTAGAGCTCTACAATGGT+GGG + Chr4:82212874-82212893 MsG0480023211.01.T01:intron 45.0%
GTCCAGTTCATTCCCAAAAG+TGG - Chr4:82214654-82214673 None:intergenic 45.0%
TAACAGAGAAAACTGGGAGC+AGG - Chr4:82213476-82213495 None:intergenic 45.0%
TAGTGAAGCAGCCAATAGAC+AGG + Chr4:82212788-82212807 MsG0480023211.01.T01:CDS 45.0%
TCCTTCCCTCTTGGATTTCT+TGG - Chr4:82211373-82211392 None:intergenic 45.0%
TCTTAATGCCAGCCAAAGCT+TGG + Chr4:82211757-82211776 MsG0480023211.01.T01:intron 45.0%
TGATCTACATGCCAATGCCA+TGG - Chr4:82214816-82214835 None:intergenic 45.0%
TGCATGCACGTTATAAGTCG+TGG + Chr4:82214090-82214109 MsG0480023211.01.T01:intron 45.0%
TGCGTCAATAGAAGGATTGC+CGG + Chr4:82211876-82211895 MsG0480023211.01.T01:CDS 45.0%
TGGGAACAATAGTGACTGTG+TGG - Chr4:82212369-82212388 None:intergenic 45.0%
TGTCACACTGTCATTGCAGT+TGG + Chr4:82213173-82213192 MsG0480023211.01.T01:intron 45.0%
TGTTTCAGGGCAACCTTTGT+TGG + Chr4:82214892-82214911 MsG0480023211.01.T01:intron 45.0%
TTACTCGGACACCATAGCAA+AGG - Chr4:82213583-82213602 None:intergenic 45.0%
TTCACTGCATGAGAAGCCAT+GGG - Chr4:82214964-82214983 None:intergenic 45.0%
! ACCTGATAGGAGGGCTTTTA+TGG + Chr4:82214986-82215005 MsG0480023211.01.T01:CDS 45.0%
! GGGTTAGCATTCTCAACAAG+TGG - Chr4:82211468-82211487 None:intergenic 45.0%
! GGTGTTTTGCACATAGGCAA+TGG + Chr4:82214705-82214724 MsG0480023211.01.T01:CDS 45.0%
! GTGTAAAACCAAGCTTTGGC+TGG - Chr4:82211768-82211787 None:intergenic 45.0%
! TGATAGGAGGGCTTTTATGG+CGG + Chr4:82214989-82215008 MsG0480023211.01.T01:CDS 45.0%
! TTCAAGCCATTGGGTGGTTT+TGG - Chr4:82213895-82213914 None:intergenic 45.0%
!! AAACGGATTGAAGGAGAACC+TGG - Chr4:82211569-82211588 None:intergenic 45.0%
!! CAAGCTTGCATACTGACTTC+TGG + Chr4:82211513-82211532 MsG0480023211.01.T01:CDS 45.0%
!! TCCGAGCCATCAGTTAGTTT+TGG + Chr4:82213511-82213530 MsG0480023211.01.T01:intron 45.0%
!! TCTGGTCTCATTGCTGCTTT+CGG + Chr4:82211531-82211550 MsG0480023211.01.T01:CDS 45.0%
!! TTCCAGGAACTACTTTTCCG+CGG + Chr4:82214618-82214637 MsG0480023211.01.T01:intron 45.0%
!!! GGTGGTTTTGGTTCTCTTCT+TGG - Chr4:82213883-82213902 None:intergenic 45.0%
!!! TGCCACTTTTGGGAATGAAC+TGG + Chr4:82214649-82214668 MsG0480023211.01.T01:CDS 45.0%
!!! TATAATATTCAAATTTTAAA+TGG - Chr4:82214303-82214322 None:intergenic 5.0%
ACAGCACTCCTGGAAGGAAT+AGG - Chr4:82211489-82211508 None:intergenic 50.0%
ACTGTGAGGGAGAGTGATGA+AGG - Chr4:82211004-82211023 None:intergenic 50.0%
CAGCACTCCTGGAAGGAATA+GGG - Chr4:82211488-82211507 None:intergenic 50.0%
CATTAACGGAAACTGGGAGC+AGG + Chr4:82213927-82213946 MsG0480023211.01.T01:intron 50.0%
CCAAAGGTTGGAGAGAGCTA+AGG - Chr4:82214474-82214493 None:intergenic 50.0%
CTGCTCCCAGTTTCCGTTAA+TGG - Chr4:82213929-82213948 None:intergenic 50.0%
GAAGGGTAGTGTGTAACTCG+TGG - Chr4:82213004-82213023 None:intergenic 50.0%
GCAGTGAACAACCTGATAGG+AGG + Chr4:82214976-82214995 MsG0480023211.01.T01:CDS 50.0%
GCATCCTCTTAAGCCTCCAA+AGG - Chr4:82214073-82214092 None:intergenic 50.0%
GCCAAGAAATCCAAGAGGGA+AGG + Chr4:82211369-82211388 MsG0480023211.01.T01:CDS 50.0%
GCCATAAAAGCCCTCCTATC+AGG - Chr4:82214990-82215009 None:intergenic 50.0%
GTTCACTGCATGAGAAGCCA+TGG - Chr4:82214965-82214984 None:intergenic 50.0%
TACATGCCAATGCCATGGAG+AGG - Chr4:82214811-82214830 None:intergenic 50.0%
TCGTATCCTCTCCATGGCAT+TGG + Chr4:82214802-82214821 MsG0480023211.01.T01:intron 50.0%
TCTCGCACACTCTCAATTCC+TGG + Chr4:82210935-82210954 MsG0480023211.01.T01:CDS 50.0%
TCTGTAGAGCAGTCCAAGAC+CGG - Chr4:82211898-82211917 None:intergenic 50.0%
TGTATCAGGTCCTTCCCTCT+TGG - Chr4:82211382-82211401 None:intergenic 50.0%
TTATTCAACCTCCCCGTCGA+TGG + Chr4:82215084-82215103 MsG0480023211.01.T01:three_prime_UTR 50.0%
! ATTGCCGTTGCAGTTTTGCC+TGG + Chr4:82214499-82214518 MsG0480023211.01.T01:CDS 50.0%
! CCTTAGCTCTCTCCAACCTT+TGG + Chr4:82214471-82214490 MsG0480023211.01.T01:CDS 50.0%
!! AGGGAGCATTGAAGGTGAAG+TGG + Chr4:82213306-82213325 MsG0480023211.01.T01:intron 50.0%
!! CTGGTCTCATTGCTGCTTTC+GGG + Chr4:82211532-82211551 MsG0480023211.01.T01:CDS 50.0%
!! TGGTAGGAGTGTTCACACTC+TGG - Chr4:82212924-82212943 None:intergenic 50.0%
!!! GGCACAGTTCTGCCACTTTT+GGG + Chr4:82214639-82214658 MsG0480023211.01.T01:CDS 50.0%
AAAGTGGCAGAACTGTGCCG+CGG - Chr4:82214638-82214657 None:intergenic 55.0%
AGCTTGAAGCACAGCACTCC+TGG - Chr4:82211499-82211518 None:intergenic 55.0%
CATGGGAACTGCAAGGCTAG+AGG - Chr4:82214947-82214966 None:intergenic 55.0%
GAGAAGCCATGGGAACTGCA+AGG - Chr4:82214954-82214973 None:intergenic 55.0%
GGACATGCACCAGATGGCAA+AGG - Chr4:82214742-82214761 None:intergenic 55.0%
TGAAGCACAGCACTCCTGGA+AGG - Chr4:82211495-82211514 None:intergenic 55.0%
TGCCGCGGAAAAGTAGTTCC+TGG - Chr4:82214623-82214642 None:intergenic 55.0%
TTTCGGGACAGTGATTCGCC+AGG + Chr4:82211548-82211567 MsG0480023211.01.T01:CDS 55.0%
!! CTCTAGCCTTGCAGTTCCCA+TGG + Chr4:82214945-82214964 MsG0480023211.01.T01:CDS 55.0%
!!! CGGCACAGTTCTGCCACTTT+TGG + Chr4:82214638-82214657 MsG0480023211.01.T01:CDS 55.0%
ACACCAAACCATCGACGGGG+AGG - Chr4:82215095-82215114 None:intergenic 60.0%
CAACCTCCCCGTCGATGGTT+TGG + Chr4:82215089-82215108 MsG0480023211.01.T01:three_prime_UTR 60.0%
CTGCTCCCGAGATCCTGTCT+CGG + Chr4:82213852-82213871 MsG0480023211.01.T01:intron 60.0%
CTTCTTGGGGTCACCGAGAC+AGG - Chr4:82213868-82213887 None:intergenic 60.0%
GGGTCACCGAGACAGGATCT+CGG - Chr4:82213861-82213880 None:intergenic 60.0%
GGTCACCGAGACAGGATCTC+GGG - Chr4:82213860-82213879 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 82210785 82215337 82210785 ID=MsG0480023211.01;Name=MsG0480023211.01
Chr4 mRNA 82210785 82215337 82210785 ID=MsG0480023211.01.T01;Parent=MsG0480023211.01;Name=MsG0480023211.01.T01;_AED=0.37;_eAED=0.38;_QI=83|0.83|0.71|1|0.66|0.57|7|302|303
Chr4 exon 82210785 82211021 82210785 ID=MsG0480023211.01.T01:exon:2424;Parent=MsG0480023211.01.T01
Chr4 exon 82211343 82211569 82211343 ID=MsG0480023211.01.T01:exon:2425;Parent=MsG0480023211.01.T01
Chr4 exon 82211865 82211918 82211865 ID=MsG0480023211.01.T01:exon:2426;Parent=MsG0480023211.01.T01
Chr4 exon 82212660 82212809 82212660 ID=MsG0480023211.01.T01:exon:2427;Parent=MsG0480023211.01.T01
Chr4 exon 82214469 82214531 82214469 ID=MsG0480023211.01.T01:exon:2428;Parent=MsG0480023211.01.T01
Chr4 exon 82214624 82214751 82214624 ID=MsG0480023211.01.T01:exon:2429;Parent=MsG0480023211.01.T01
Chr4 exon 82214900 82215337 82214900 ID=MsG0480023211.01.T01:exon:2430;Parent=MsG0480023211.01.T01
Chr4 five_prime_UTR 82210785 82210867 82210785 ID=MsG0480023211.01.T01:five_prime_utr;Parent=MsG0480023211.01.T01
Chr4 CDS 82210868 82211021 82210868 ID=MsG0480023211.01.T01:cds;Parent=MsG0480023211.01.T01
Chr4 CDS 82211343 82211569 82211343 ID=MsG0480023211.01.T01:cds;Parent=MsG0480023211.01.T01
Chr4 CDS 82211865 82211918 82211865 ID=MsG0480023211.01.T01:cds;Parent=MsG0480023211.01.T01
Chr4 CDS 82212660 82212809 82212660 ID=MsG0480023211.01.T01:cds;Parent=MsG0480023211.01.T01
Chr4 CDS 82214469 82214531 82214469 ID=MsG0480023211.01.T01:cds;Parent=MsG0480023211.01.T01
Chr4 CDS 82214624 82214751 82214624 ID=MsG0480023211.01.T01:cds;Parent=MsG0480023211.01.T01
Chr4 CDS 82214900 82215035 82214900 ID=MsG0480023211.01.T01:cds;Parent=MsG0480023211.01.T01
Chr4 three_prime_UTR 82215036 82215337 82215036 ID=MsG0480023211.01.T01:three_prime_utr;Parent=MsG0480023211.01.T01
Gene Sequence

>MsG0480023211.01.T01

ATGAATATCAATTACATGCTTCATATATTATGTAGTATCATTCATTCATACATGGCCGTGCTTTATCTCTCGCACACTCTCAATTCCTGGAGTTGCTGTAGTACTATCGCTCACACAGCATACTCTACTGCTACCTTCATCACTCTCCCTCACAGGAGTAGATATAACACATGTTCTTTTGCCAAGAAATCCAAGAGGGAAGGACCTGATACATCTGTAGATCTCTCAAACGACAAATCTGTTCAAAATGACAACTTATTGGACACTTCTCTTAATCCACTTGTTGAGAATGCTAACCCTATTCCTTCCAGGAGTGCTGTGCTTCAAGCTTGCATACTGACTTCTGGTCTCATTGCTGCTTTCGGGACAGTGATTCGCCAGGTGTCTCATGTTGCGTCAATAGAAGGATTGCCGGTCTTGGACTGCTCTACAGAAACTTTTTTTTCTCCTCTTATATGCAGTTGTTTTGAAATGTGGCATCTTGAGATGATTACAGGAATTGTAGTATTAATATCATCAAGTCGCTATTTGCTATTGAAGACTTGGCCGGATTTTGCTGAGTCTAGTGAAGCAGCCAATAGACAGGTCCTTAGCTCTCTCCAACCTTTGGATTATATTGCCGTTGCAGTTTTGCCTGGAATTAGTGAGGAACTACTTTTCCGCGGCACAGTTCTGCCACTTTTGGGAATGAACTGGACGAGTATTGCGGTAGCTGCTGCTTTAATCTTTGGTGTTTTGCACATAGGCAATGGTCGAAACTATTCCTTTGCCATCTGGGCAACCTTTGTTGGTCTTGTATACGGATATGCTACAGTTTTATCCTCTAGCCTTGCAGTTCCCATGGCTTCTCATGCAGTGAACAACCTGATAGGAGGGCTTTTATGGCGGTACACATCAAGCAAGCAGAAATGA

Protein sequence

>MsG0480023211.01.T01

MNINYMLHILCSIIHSYMAVLYLSHTLNSWSCCSTIAHTAYSTATFITLPHRSRYNTCSFAKKSKREGPDTSVDLSNDKSVQNDNLLDTSLNPLVENANPIPSRSAVLQACILTSGLIAAFGTVIRQVSHVASIEGLPVLDCSTETFFSPLICSCFEMWHLEMITGIVVLISSSRYLLLKTWPDFAESSEAANRQVLSSLQPLDYIAVAVLPGISEELLFRGTVLPLLGMNWTSIAVAAALIFGVLHIGNGRNYSFAIWATFVGLVYGYATVLSSSLAVPMASHAVNNLIGGLLWRYTSSKQK*