AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480018202.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018202.01.T01 MTR_4g007190 97.674 129 3 0 57 185 232 360 9.94e-88 263
MsG0480018202.01.T02 MTR_4g007190 97.674 129 3 0 57 185 232 360 9.94e-88 263
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480018202.01.T01 AT1G73060 85.496 131 19 0 55 185 209 339 5.44e-78 238
MsG0480018202.01.T02 AT1G73060 85.496 131 19 0 55 185 209 339 5.44e-78 238

Find 22 sgRNAs with CRISPR-Local

Find 377 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATTATAATCATACATATT+TGG 0.213712 4:-1531516 None:intergenic
GCTTTGTCCTCGTATTTCTT+TGG 0.302301 4:-1531380 None:intergenic
GTGGGAAGAAGATTCTGATT+TGG 0.401550 4:+1531194 MsG0480018202.01.T01:CDS
TTCATTAATTAAACTGTGCA+TGG 0.437620 4:-1531582 None:intergenic
GGTAACTTCCATGATGCCTT+AGG 0.487070 4:+1531459 MsG0480018202.01.T01:intron
TCATTAATTAAACTGTGCAT+GGG 0.512830 4:-1531581 None:intergenic
AAAGAAGGCATTGCCTACAT+AGG 0.519917 4:+1531319 MsG0480018202.01.T01:three_prime_UTR
TTGCAATTCAAGACAGCCTA+AGG 0.541247 4:-1531475 None:intergenic
CAAGACAGCCTAAGGCATCA+TGG 0.548798 4:-1531467 None:intergenic
TATTGTCCATCCACACGCAA+TGG 0.574810 4:+1531274 MsG0480018202.01.T01:three_prime_UTR
ATGTCACATGCAGAGAAAGA+AGG 0.576024 4:+1531304 MsG0480018202.01.T01:three_prime_UTR
CGATGACCATTGCGTGTGGA+TGG 0.581289 4:-1531280 None:intergenic
CCTCTAGCAATGTTCTACTC+AGG 0.589927 4:-1531238 None:intergenic
ATTGCAGTCAAGCACGTGGT+GGG 0.590052 4:+1531176 MsG0480018202.01.T01:intron
ATTTGGAAGTATCATCTGCA+TGG 0.634373 4:+1531211 MsG0480018202.01.T01:CDS
CATTAATTAAACTGTGCATG+GGG 0.638011 4:-1531580 None:intergenic
TATTGCAGTCAAGCACGTGG+TGG 0.640120 4:+1531175 MsG0480018202.01.T01:intron
CATTCGATGACCATTGCGTG+TGG 0.671084 4:-1531284 None:intergenic
CCTGAGTAGAACATTGCTAG+AGG 0.675597 4:+1531238 MsG0480018202.01.T01:exon
GAGTAGAACATTGCTAGAGG+AGG 0.693732 4:+1531241 MsG0480018202.01.T01:exon
TGGAAGTATCATCTGCATGG+CGG 0.725682 4:+1531214 MsG0480018202.01.T01:CDS
TGATATTGCAGTCAAGCACG+TGG 0.735833 4:+1531172 MsG0480018202.01.T01:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAACCTATGT+AGG - Chr4:1531335-1531354 None:intergenic 15.0%
!! AAATATATATGTATTAGTGT+CGG - Chr4:1533508-1533527 MsG0480018204.01.T01:intron 15.0%
!! ACGATTTATGAAAAAAATTT+AGG - Chr4:1530592-1530611 None:intergenic 15.0%
!! ATACATCAAATTAAATAACT+AGG - Chr4:1529452-1529471 None:intergenic 15.0%
!! ATATTTATAAAGGATGATAT+AGG + Chr4:1533337-1533356 MsG0480018202.01.T01:intron 15.0%
!! CGATTTATGAAAAAAATTTA+GGG - Chr4:1530591-1530610 None:intergenic 15.0%
!! TATATTAGTAATATGCAATA+AGG - Chr4:1530369-1530388 None:intergenic 15.0%
!! TCATTATAATCATACATATT+TGG - Chr4:1531519-1531538 None:intergenic 15.0%
!!! ATATTTTCTCAAATAATATG+AGG + Chr4:1529825-1529844 MsG0480018202.01.T01:intron 15.0%
!!! CTTGTATAAATATTTTAAGA+AGG - Chr4:1531052-1531071 None:intergenic 15.0%
!!! TATAAATATTTTAAGAAGGT+TGG - Chr4:1531048-1531067 None:intergenic 15.0%
!! AAAAAAAAAAACTAGCTATC+TGG - Chr4:1530509-1530528 None:intergenic 20.0%
!! ATACCTTATCTAATATCTAT+TGG + Chr4:1530750-1530769 MsG0480018202.01.T01:intron 20.0%
!! ATTCATTTGTGTAATGAATT+TGG + Chr4:1530456-1530475 MsG0480018202.01.T01:intron 20.0%
!! CAGATAATGATAAATATCTA+GGG - Chr4:1529793-1529812 None:intergenic 20.0%
!! GAATCAAAGCATATTTATAA+AGG + Chr4:1533327-1533346 MsG0480018202.01.T01:intron 20.0%
!! TAAATAGTAAAACTTGATGT+AGG + Chr4:1529318-1529337 MsG0480018202.01.T01:intron 20.0%
!! TCAGATAATGATAAATATCT+AGG - Chr4:1529794-1529813 None:intergenic 20.0%
!!! AAATTTTTCTTGAGTCATAT+TGG + Chr4:1528613-1528632 MsG0480018202.01.T01:intron 20.0%
!!! AAGATTAAATAAAAGTGTTG+GGG - Chr4:1529521-1529540 None:intergenic 20.0%
!!! ACTATTATTTTGTAGATAAC+GGG - Chr4:1533935-1533954 MsG0480018204.01.T01:intron 20.0%
!!! AGTTCTTTCATTTGTTTTTT+TGG + Chr4:1528970-1528989 MsG0480018202.01.T01:intron 20.0%
!!! ATGTGTAAATTTTACATAAG+AGG - Chr4:1530959-1530978 None:intergenic 20.0%
!!! ATTTTTTTCATAAATCGTTC+AGG + Chr4:1530594-1530613 MsG0480018202.01.T01:intron 20.0%
!!! CAAGATTAAATAAAAGTGTT+GGG - Chr4:1529522-1529541 None:intergenic 20.0%
!!! GACTATTATTTTGTAGATAA+CGG - Chr4:1533936-1533955 MsG0480018204.01.T01:intron 20.0%
!!! TCAAGATTAAATAAAAGTGT+TGG - Chr4:1529523-1529542 None:intergenic 20.0%
!!! TCAAGTTTTACTATTTAATG+CGG - Chr4:1529315-1529334 None:intergenic 20.0%
!!! TTATAAACTGAGTGTTTTAT+AGG + Chr4:1533545-1533564 MsG0480018202.01.T01:intron 20.0%
!!! TTCATGATTTTTTATCTGTT+CGG + Chr4:1528821-1528840 MsG0480018202.01.T01:CDS 20.0%
!!! TTGTACTCTTTTTTGTTTAT+TGG + Chr4:1529565-1529584 MsG0480018202.01.T01:intron 20.0%
! AAAATCATGAAACCTTCTAA+TGG - Chr4:1528812-1528831 None:intergenic 25.0%
! AACCCACTATAATGAAAATT+TGG - Chr4:1531084-1531103 None:intergenic 25.0%
! AAGCCAATAGATATTAGATA+AGG - Chr4:1530756-1530775 None:intergenic 25.0%
! AATTCACATTTCTTGTATTG+TGG - Chr4:1533836-1533855 MsG0480018204.01.T01:CDS 25.0%
! ATAAATATATAGCTGTACCA+GGG - Chr4:1529935-1529954 None:intergenic 25.0%
! ATAGACAGTAACAAAATTTG+GGG + Chr4:1533651-1533670 MsG0480018202.01.T01:intron 25.0%
! ATCATGTATCACAGATTATT+AGG - Chr4:1530017-1530036 None:intergenic 25.0%
! ATGGGATCATAAATCATATT+TGG + Chr4:1531107-1531126 MsG0480018202.01.T01:intron 25.0%
! CAACAAACATTAAGACATAT+TGG + Chr4:1534554-1534573 MsG0480018202.01.T01:intron 25.0%
! CACAAAGAATTATCAAAATC+TGG + Chr4:1530329-1530348 MsG0480018202.01.T01:intron 25.0%
! CATAGACAGTAACAAAATTT+GGG + Chr4:1533650-1533669 MsG0480018202.01.T01:intron 25.0%
! GAAAAGATTCCATAGTTAAA+AGG + Chr4:1533716-1533735 MsG0480018202.01.T01:intron 25.0%
! GAAATGTGAGTTTCTTAATA+TGG + Chr4:1529374-1529393 MsG0480018202.01.T01:intron 25.0%
! TAGTAATATGCAATAAGGTA+AGG - Chr4:1530364-1530383 None:intergenic 25.0%
! TAGTATGATTATATTCCCTT+GGG - Chr4:1529119-1529138 None:intergenic 25.0%
! TATAAATATATAGCTGTACC+AGG - Chr4:1529936-1529955 None:intergenic 25.0%
! TATCATTCACATATTCTCTT+TGG - Chr4:1534204-1534223 MsG0480018204.01.T01:intron 25.0%
! TCACAGTTAGTAAGAAAATA+AGG - Chr4:1530720-1530739 None:intergenic 25.0%
! TCATTAATTAAACTGTGCAT+GGG - Chr4:1531584-1531603 None:intergenic 25.0%
! TCCATAGTAATAGCTATTAT+GGG - Chr4:1533170-1533189 MsG0480018204.01.T01:CDS 25.0%
! TCTTAAGAAATGAACTTACA+TGG + Chr4:1534319-1534338 MsG0480018202.01.T01:intron 25.0%
! TGTTAATATTAGATAACTGG+TGG - Chr4:1530144-1530163 None:intergenic 25.0%
! TTAGTATGATTATATTCCCT+TGG - Chr4:1529120-1529139 None:intergenic 25.0%
! TTATTTCAACCATTGCAAAA+AGG - Chr4:1530916-1530935 None:intergenic 25.0%
! TTCATTAATTAAACTGTGCA+TGG - Chr4:1531585-1531604 None:intergenic 25.0%
! TTCCATAGTAATAGCTATTA+TGG - Chr4:1533171-1533190 MsG0480018204.01.T01:CDS 25.0%
! TTGTTTGAATTTAGTCAGAA+GGG - Chr4:1532804-1532823 MsG0480018204.01.T01:CDS 25.0%
! TTTGTTTGAATTTAGTCAGA+AGG - Chr4:1532805-1532824 MsG0480018204.01.T01:CDS 25.0%
!! AGCCAAATTTTCATTATAGT+GGG + Chr4:1531079-1531098 MsG0480018202.01.T01:intron 25.0%
!! ATAGGGATTATTCTTTCTTT+TGG - Chr4:1529219-1529238 None:intergenic 25.0%
!! ATTAAATTTCTTAGAAGTGC+AGG + Chr4:1528687-1528706 MsG0480018202.01.T01:intron 25.0%
!! ATTGGCAAATAAAAGCATAT+TGG - Chr4:1530555-1530574 None:intergenic 25.0%
!! TAGAAAAATTGGATGCTTTT+TGG + Chr4:1534160-1534179 MsG0480018202.01.T01:intron 25.0%
!! TATATTGTGCTATTGGTAAT+GGG - Chr4:1529194-1529213 None:intergenic 25.0%
!! TGGTGTTAATATTAGATAAC+TGG - Chr4:1530147-1530166 None:intergenic 25.0%
!! TTATATTGTGCTATTGGTAA+TGG - Chr4:1529195-1529214 None:intergenic 25.0%
!! TTCTATTACTACTATTTTGC+AGG + Chr4:1529477-1529496 MsG0480018202.01.T01:intron 25.0%
!! TTTGGTTTATATTGTGCTAT+TGG - Chr4:1529201-1529220 None:intergenic 25.0%
!!! AAAAGCATCCAATTTTTCTA+TGG - Chr4:1534160-1534179 MsG0480018204.01.T01:intron 25.0%
!!! AATAAATTTTGGTGTCCAAT+CGG + Chr4:1534087-1534106 MsG0480018202.01.T01:intron 25.0%
!!! ATATCTCTTCTAAGATCTTT+TGG + Chr4:1532836-1532855 MsG0480018202.01.T01:intron 25.0%
!!! ATGAGGAGTATCAATTTTAA+TGG + Chr4:1534127-1534146 MsG0480018202.01.T01:intron 25.0%
!!! GTTTTATAGGTGTTATAAAG+AGG + Chr4:1533558-1533577 MsG0480018202.01.T01:intron 25.0%
!!! TCATTATAGTGGGTTATTAT+GGG + Chr4:1531089-1531108 MsG0480018202.01.T01:intron 25.0%
!!! TGAGGAGTATCAATTTTAAT+GGG + Chr4:1534128-1534147 MsG0480018202.01.T01:intron 25.0%
!!! TTAATGTTTGTTGTAGATTG+TGG - Chr4:1534547-1534566 MsG0480018204.01.T01:intron 25.0%
!!! TTCATTATAGTGGGTTATTA+TGG + Chr4:1531088-1531107 MsG0480018202.01.T01:intron 25.0%
AAAGCATGTAAAGAAGTTGA+GGG - Chr4:1533863-1533882 MsG0480018204.01.T01:CDS 30.0%
AAATTTGGGGAAAACTTCTA+TGG + Chr4:1533664-1533683 MsG0480018202.01.T01:intron 30.0%
AAGCAAAACAGAAGGATATT+TGG + Chr4:1533249-1533268 MsG0480018202.01.T01:intron 30.0%
AATCATACTAAGAACACTTG+AGG + Chr4:1529129-1529148 MsG0480018202.01.T01:intron 30.0%
AATTTATACTGTCAAACCCA+AGG + Chr4:1529100-1529119 MsG0480018202.01.T01:intron 30.0%
ATACCAGATCAAATAGTACA+TGG + Chr4:1534353-1534372 MsG0480018202.01.T01:intron 30.0%
ATGGCTAATGTGAAAAACAT+AGG + Chr4:1533479-1533498 MsG0480018202.01.T01:intron 30.0%
ATTGTAGATTCACTTGATGT+TGG - Chr4:1533368-1533387 MsG0480018204.01.T01:intron 30.0%
ATTGTCAATAAGAAAAAGCG+AGG + Chr4:1530425-1530444 MsG0480018202.01.T01:intron 30.0%
ATTTATACTGTCAAACCCAA+GGG + Chr4:1529101-1529120 MsG0480018202.01.T01:intron 30.0%
CATTAATTAAACTGTGCATG+GGG - Chr4:1531583-1531602 None:intergenic 30.0%
CATTCTTATCTGTATTAGCT+TGG + Chr4:1528874-1528893 MsG0480018202.01.T01:intron 30.0%
CCAATTGCATTTATAACACA+GGG + Chr4:1533043-1533062 MsG0480018202.01.T01:intron 30.0%
CCACTGTAATTGACAATATA+AGG - Chr4:1529894-1529913 None:intergenic 30.0%
CCATAGACAGTAACAAAATT+TGG + Chr4:1533649-1533668 MsG0480018202.01.T01:intron 30.0%
CCATAGTAATAGCTATTATG+GGG - Chr4:1533169-1533188 MsG0480018204.01.T01:CDS 30.0%
CCTTATATTGTCAATTACAG+TGG + Chr4:1529891-1529910 MsG0480018202.01.T01:CDS 30.0%
CTCCATAAAAGAAAAGATGT+TGG - Chr4:1534244-1534263 MsG0480018204.01.T01:intron 30.0%
GAGAAGTTGTGTTAAAAGAA+AGG + Chr4:1530094-1530113 MsG0480018202.01.T01:intron 30.0%
GAGTAAATTGAGAAAGAAAG+CGG - Chr4:1529711-1529730 None:intergenic 30.0%
GCACATTAGGGAATATAATT+GGG - Chr4:1531018-1531037 None:intergenic 30.0%
GGAAGTTTCCATAGAAAAAT+TGG + Chr4:1534149-1534168 MsG0480018202.01.T01:intron 30.0%
GTGTATGGCATATATTATTC+AGG - Chr4:1532688-1532707 MsG0480018204.01.T01:intron 30.0%
GTTAGAATAGATTACGCTAT+AGG - Chr4:1534010-1534029 MsG0480018204.01.T01:intron 30.0%
GTTGGTATTTATGCACATTA+GGG - Chr4:1531030-1531049 None:intergenic 30.0%
TAAACATTGATCATTCGTGT+CGG + Chr4:1533961-1533980 MsG0480018202.01.T01:intron 30.0%
TCAGTATATGCAACAACAAT+AGG + Chr4:1530186-1530205 MsG0480018202.01.T01:intron 30.0%
TCATGTAGATGTGTTAAACT+TGG + Chr4:1531712-1531731 MsG0480018202.01.T01:intron 30.0%
TCCAATTGCATTTATAACAC+AGG + Chr4:1533042-1533061 MsG0480018202.01.T01:intron 30.0%
TCTCATTAGTATTCTGTGTA+TGG - Chr4:1532703-1532722 MsG0480018204.01.T01:intron 30.0%
TGCACATTAGGGAATATAAT+TGG - Chr4:1531019-1531038 None:intergenic 30.0%
TGCACATTATTTATCACCAA+TGG - Chr4:1528935-1528954 None:intergenic 30.0%
TTAATGAATATGTAGAGCGA+TGG - Chr4:1528735-1528754 None:intergenic 30.0%
TTCAGTATAATACAGCTGTA+GGG - Chr4:1529242-1529261 None:intergenic 30.0%
TTGTAGATATTCTGACATAG+AGG - Chr4:1534032-1534051 MsG0480018204.01.T01:intron 30.0%
TTGTAGATTCACTTGATGTT+GGG - Chr4:1533367-1533386 MsG0480018204.01.T01:intron 30.0%
! AATATTTTCCGAGAATGGTA+CGG - Chr4:1534446-1534465 MsG0480018204.01.T01:CDS 30.0%
! AATTTTGTTACTGTCTATGG+TGG - Chr4:1533649-1533668 MsG0480018204.01.T01:CDS 30.0%
! ATTTTGTTACTGTCTATGGT+GGG - Chr4:1533648-1533667 MsG0480018204.01.T01:CDS 30.0%
! CACCAACATCTTTTCTTTTA+TGG + Chr4:1534239-1534258 MsG0480018202.01.T01:intron 30.0%
! CCAAATTTTGTTACTGTCTA+TGG - Chr4:1533652-1533671 MsG0480018204.01.T01:CDS 30.0%
! GAGCCAAATTTTCATTATAG+TGG + Chr4:1531078-1531097 MsG0480018202.01.T01:intron 30.0%
! GATGGTAACAGATTTAAAAC+TGG - Chr4:1531146-1531165 None:intergenic 30.0%
! GGTTATATTGAGAAGTATGT+GGG + Chr4:1528774-1528793 MsG0480018202.01.T01:CDS 30.0%
! TAGGGCATCATTCATATAAT+TGG - Chr4:1530573-1530592 None:intergenic 30.0%
! TGGTTATATTGAGAAGTATG+TGG + Chr4:1528773-1528792 MsG0480018202.01.T01:CDS 30.0%
!! AGACGTTTATTTTTCTCCAT+TGG + Chr4:1528916-1528935 MsG0480018202.01.T01:intron 30.0%
!! GATAACTCACCTTTTAACTA+TGG - Chr4:1533728-1533747 MsG0480018204.01.T01:CDS 30.0%
!! TAATATCTATTGGCTTGTCT+AGG + Chr4:1530760-1530779 MsG0480018202.01.T01:intron 30.0%
!! TTTTCTGAAAATGCATTGCT+TGG - Chr4:1534381-1534400 MsG0480018204.01.T01:CDS 30.0%
!!! ATAAATTTTGGTGTCCAATC+GGG + Chr4:1534088-1534107 MsG0480018202.01.T01:intron 30.0%
!!! TTTTTAACTTCTGAAGCCAA+AGG + Chr4:1534414-1534433 MsG0480018202.01.T01:intron 30.0%
AAAATCTTCCTTGCAAGATC+TGG - Chr4:1530167-1530186 None:intergenic 35.0%
AAAGCGGTATTGCAAATCTT+TGG - Chr4:1529695-1529714 None:intergenic 35.0%
AACACGTTAATTATGTGCAC+TGG + Chr4:1529421-1529440 MsG0480018202.01.T01:intron 35.0%
AACTCACATTTCACCAACAA+AGG - Chr4:1529366-1529385 None:intergenic 35.0%
AAGCGGTATTGCAAATCTTT+GGG - Chr4:1529694-1529713 None:intergenic 35.0%
AATTTCTACGAAGAGGCTAT+AGG + Chr4:1530840-1530859 MsG0480018202.01.T01:CDS 35.0%
ACTGCAATATCACAAGATGA+TGG - Chr4:1531164-1531183 None:intergenic 35.0%
ACTGTGAAAAGCAAAACAGA+AGG + Chr4:1533241-1533260 MsG0480018202.01.T01:intron 35.0%
AGAATAGATTACGCTATAGG+CGG - Chr4:1534007-1534026 MsG0480018204.01.T01:intron 35.0%
AGGGACTATTCAATAGAGAA+GGG - Chr4:1529774-1529793 None:intergenic 35.0%
AGTTCAAGTAAGCATATACC+AGG - Chr4:1533812-1533831 MsG0480018204.01.T01:CDS 35.0%
ATAATACAGCTGTAGGGATA+GGG - Chr4:1529236-1529255 None:intergenic 35.0%
ATACAACAGTCTATGCTTCT+CGG - Chr4:1532089-1532108 MsG0480018204.01.T01:CDS 35.0%
ATACTACGAATCTGATTACC+CGG - Chr4:1532175-1532194 MsG0480018204.01.T01:CDS 35.0%
ATCTTGAGCTAGATACACTA+CGG + Chr4:1529536-1529555 MsG0480018202.01.T01:CDS 35.0%
ATGAACAACATCTCATCAAC+TGG + Chr4:1532558-1532577 MsG0480018202.01.T01:intron 35.0%
ATGCATAAAAGCAACGCAAA+CGG - Chr4:1530885-1530904 None:intergenic 35.0%
ATTTCTACGAAGAGGCTATA+GGG + Chr4:1530841-1530860 MsG0480018202.01.T01:CDS 35.0%
CAATCTATATTCAAGCTGCA+TGG - Chr4:1532239-1532258 MsG0480018204.01.T01:CDS 35.0%
CATAAGTGATACAGAAGCAA+TGG + Chr4:1534275-1534294 MsG0480018202.01.T01:intron 35.0%
CCCCATAATAGCTATTACTA+TGG + Chr4:1533166-1533185 MsG0480018202.01.T01:intron 35.0%
CCCTGTGTTATAAATGCAAT+TGG - Chr4:1533046-1533065 MsG0480018204.01.T01:intron 35.0%
CCTCAAAGTTCGTCAAAATT+TGG - Chr4:1532117-1532136 MsG0480018204.01.T01:CDS 35.0%
CTGTATCACCTGAAAAAACA+GGG + Chr4:1530390-1530409 MsG0480018202.01.T01:intron 35.0%
CTTCAGTATAATACAGCTGT+AGG - Chr4:1529243-1529262 None:intergenic 35.0%
GCCTAGAACCATGTATTTAT+AGG + Chr4:1531787-1531806 MsG0480018202.01.T01:intron 35.0%
GCCTATAAATACATGGTTCT+AGG - Chr4:1531791-1531810 MsG0480018204.01.T01:three_prime_UTR 35.0%
GTAAAATTTACACATTCCCG+TGG + Chr4:1530964-1530983 MsG0480018202.01.T01:intron 35.0%
GTTCAAGTAAGCATATACCA+GGG - Chr4:1533811-1533830 MsG0480018204.01.T01:CDS 35.0%
GTTCGCTCTGTATATAAACT+CGG + Chr4:1532603-1532622 MsG0480018202.01.T01:intron 35.0%
TACAAATAGTGTCATGCTGA+AGG + Chr4:1531892-1531911 MsG0480018202.01.T01:intron 35.0%
TACACAAGCATAAGAACCAT+CGG - Chr4:1530646-1530665 None:intergenic 35.0%
TACTATTTAATGCGGTCACT+GGG - Chr4:1529307-1529326 None:intergenic 35.0%
TAGACACATACATAGTAGAC+AGG - Chr4:1532310-1532329 MsG0480018204.01.T01:CDS 35.0%
TAGGGACTATTCAATAGAGA+AGG - Chr4:1529775-1529794 None:intergenic 35.0%
TATAATACAGCTGTAGGGAT+AGG - Chr4:1529237-1529256 None:intergenic 35.0%
TATTAACACCAGATCTTGCA+AGG + Chr4:1530156-1530175 MsG0480018202.01.T01:intron 35.0%
TCAGAAGTTAAAAAGACAGC+TGG - Chr4:1534408-1534427 MsG0480018204.01.T01:CDS 35.0%
TCATGAACTTACTTCACCAA+GGG - Chr4:1530691-1530710 None:intergenic 35.0%
TCCATTGTTGCGAATAGAAA+CGG + Chr4:1532271-1532290 MsG0480018202.01.T01:intron 35.0%
TCGGATCAGAGATTATTCAA+AGG + Chr4:1529744-1529763 MsG0480018202.01.T01:CDS 35.0%
TCTGTATCACCTGAAAAAAC+AGG + Chr4:1530389-1530408 MsG0480018202.01.T01:intron 35.0%
TCTGTATCACTTATGAAGCT+CGG - Chr4:1534270-1534289 MsG0480018204.01.T01:intron 35.0%
TGAAGAAGTTCTTGCTTATG+AGG - Chr4:1531958-1531977 MsG0480018204.01.T01:exon 35.0%
TGTGACTTACTTCAAGTCAA+AGG - Chr4:1530313-1530332 None:intergenic 35.0%
TTACTATTTAATGCGGTCAC+TGG - Chr4:1529308-1529327 None:intergenic 35.0%
TTACTCCAGTGTTCTACATT+CGG + Chr4:1529725-1529744 MsG0480018202.01.T01:CDS 35.0%
TTCATGAACTTACTTCACCA+AGG - Chr4:1530692-1530711 None:intergenic 35.0%
! ACTTTTGCCAAAGAAATACG+AGG + Chr4:1531373-1531392 MsG0480018202.01.T01:three_prime_UTR 35.0%
! ATATTGAGAAGTATGTGGGA+TGG + Chr4:1528778-1528797 MsG0480018202.01.T01:CDS 35.0%
! CAGTGTACAGAAAGTACAAA+AGG - Chr4:1531608-1531627 None:intergenic 35.0%
! CATGCAATATTTTCCGAGAA+TGG - Chr4:1534451-1534470 MsG0480018204.01.T01:CDS 35.0%
! GAAAGCATGTAAAGAAGTTG+AGG - Chr4:1533864-1533883 MsG0480018204.01.T01:CDS 35.0%
! GAAGTATCAAGAAGTGTATG+AGG + Chr4:1534110-1534129 MsG0480018202.01.T01:intron 35.0%
! GGTTGGTATTTATGCACATT+AGG - Chr4:1531031-1531050 None:intergenic 35.0%
! TAGCTTGGTCTTTGATTCTT+TGG + Chr4:1528889-1528908 MsG0480018202.01.T01:intron 35.0%
! TGCTTACATACTTCCCTTTT+TGG + Chr4:1530229-1530248 MsG0480018202.01.T01:intron 35.0%
! TTAAAACTGGACTAGAGACT+TGG - Chr4:1531133-1531152 None:intergenic 35.0%
! TTACAGTGTGACACACATTT+TGG - Chr4:1531822-1531841 MsG0480018204.01.T01:three_prime_UTR 35.0%
! TTGAAGGAAGGTGATTTTTG+TGG - Chr4:1532471-1532490 MsG0480018204.01.T01:CDS 35.0%
! TTGGTCTTTGATTCTTTGGT+AGG + Chr4:1528893-1528912 MsG0480018202.01.T01:intron 35.0%
! TTTTCACATTAGCCATGTAG+AGG - Chr4:1533475-1533494 MsG0480018204.01.T01:intron 35.0%
! TTTTGTTACTGTCTATGGTG+GGG - Chr4:1533647-1533666 MsG0480018204.01.T01:CDS 35.0%
!! AATAAAAGTGTTGGGGTTGA+TGG - Chr4:1529514-1529533 None:intergenic 35.0%
!! ATTTGGAAGTATCATCTGCA+TGG + Chr4:1531211-1531230 MsG0480018202.01.T01:CDS 35.0%
!! CCAAATTTTGACGAACTTTG+AGG + Chr4:1532114-1532133 MsG0480018202.01.T01:intron 35.0%
!! GTGGTTAGCCTATAAATACA+TGG - Chr4:1531798-1531817 MsG0480018204.01.T01:three_prime_UTR 35.0%
!! TCTCTAGAATTTCTACGAAG+AGG + Chr4:1530833-1530852 MsG0480018202.01.T01:CDS 35.0%
!! TGACTTTTGATAGCCTTTGT+TGG + Chr4:1529350-1529369 MsG0480018202.01.T01:intron 35.0%
!! TTTGCTTTTCACAGTACACT+TGG - Chr4:1533236-1533255 MsG0480018204.01.T01:intron 35.0%
AAATTACCCCCATGCCAAAA+AGG - Chr4:1530246-1530265 None:intergenic 40.0%
AATAGCAGTACACGTGAACT+TGG + Chr4:1528753-1528772 MsG0480018202.01.T01:CDS 40.0%
AATGGTACGGTTCATACCTT+TGG - Chr4:1534433-1534452 MsG0480018204.01.T01:CDS 40.0%
AATTACCCCCATGCCAAAAA+GGG - Chr4:1530245-1530264 None:intergenic 40.0%
ACTTCTTGATACTTCCCGAT+TGG - Chr4:1534105-1534124 MsG0480018204.01.T01:intron 40.0%
AGCTACCGGAAAATTGATAG+AGG + Chr4:1529164-1529183 MsG0480018202.01.T01:intron 40.0%
AGGGGTCGATGAAGAAAATT+TGG - Chr4:1532873-1532892 MsG0480018204.01.T01:CDS 40.0%
ATAAGTGTCCGACGTAGTTA+AGG - Chr4:1529612-1529631 None:intergenic 40.0%
ATATACCAGGGTATGACAGT+TGG - Chr4:1533799-1533818 MsG0480018204.01.T01:CDS 40.0%
ATGAAACCTTCTAATGGCAG+AGG - Chr4:1528806-1528825 None:intergenic 40.0%
ATGAATATGTAGAGCGATGG+AGG - Chr4:1528732-1528751 None:intergenic 40.0%
ATGGAAAACAAAACCTCTCC+AGG + Chr4:1533185-1533204 MsG0480018202.01.T01:intron 40.0%
ATGTCACATGCAGAGAAAGA+AGG + Chr4:1531304-1531323 MsG0480018202.01.T01:three_prime_UTR 40.0%
ATTCGCAACAATGGAGAACA+TGG - Chr4:1532266-1532285 MsG0480018204.01.T01:CDS 40.0%
CCACGTCAAATGAGAAATAG+AGG - Chr4:1530283-1530302 None:intergenic 40.0%
CTTGGACTTCAAGAAGAAGA+GGG + Chr4:1530806-1530825 MsG0480018202.01.T01:CDS 40.0%
GAACACTTGAGGAACAAAAG+AGG + Chr4:1529140-1529159 MsG0480018202.01.T01:intron 40.0%
GACCTACCTTCAATCAATGT+CGG - Chr4:1533020-1533039 MsG0480018204.01.T01:intron 40.0%
GAGATGTTGTTCATCATTCG+TGG - Chr4:1532552-1532571 MsG0480018204.01.T01:CDS 40.0%
GCTTTGTCCTCGTATTTCTT+TGG - Chr4:1531383-1531402 None:intergenic 40.0%
GGACTATTCAATAGAGAAGG+GGG - Chr4:1529772-1529791 None:intergenic 40.0%
GGGACTATTCAATAGAGAAG+GGG - Chr4:1529773-1529792 None:intergenic 40.0%
GGTATTGCAAATCTTTGGGT+GGG - Chr4:1529690-1529709 None:intergenic 40.0%
GTAAAACTTGATGTAGGCTC+TGG + Chr4:1529324-1529343 MsG0480018202.01.T01:intron 40.0%
GTCTAAGTCCTTAACTACGT+CGG + Chr4:1529601-1529620 MsG0480018202.01.T01:intron 40.0%
GTGCCATGTACTATTTGATC+TGG - Chr4:1534359-1534378 MsG0480018204.01.T01:CDS 40.0%
GTGGGAAGAAGATTCTGATT+TGG + Chr4:1531194-1531213 MsG0480018202.01.T01:CDS 40.0%
TACCTCACTCATAGCTTTCA+CGG + Chr4:1532380-1532399 MsG0480018202.01.T01:intron 40.0%
TACTACGAATCTGATTACCC+GGG - Chr4:1532174-1532193 MsG0480018204.01.T01:CDS 40.0%
TAGAACGTAATGACACATGC+TGG - Chr4:1533889-1533908 MsG0480018204.01.T01:CDS 40.0%
TCCGTTTCTATTCGCAACAA+TGG - Chr4:1532275-1532294 MsG0480018204.01.T01:CDS 40.0%
TCTATATTCAAGCTGCATGG+AGG - Chr4:1532236-1532255 MsG0480018204.01.T01:CDS 40.0%
TCTTCTGATTGGAAACATGC+AGG - Chr4:1533132-1533151 MsG0480018204.01.T01:CDS 40.0%
TGCAATGAGCAATCTCAGAA+AGG + Chr4:1532754-1532773 MsG0480018202.01.T01:intron 40.0%
TGGAAAACAAAACCTCTCCA+GGG + Chr4:1533186-1533205 MsG0480018202.01.T01:intron 40.0%
TGGAGGAAATGAGGATCAAA+AGG - Chr4:1532991-1533010 MsG0480018204.01.T01:CDS 40.0%
TGGTGAAGAGTTGCTAACAT+GGG - Chr4:1532451-1532470 MsG0480018204.01.T01:CDS 40.0%
TTCGCAACAATGGAGAACAT+GGG - Chr4:1532265-1532284 MsG0480018204.01.T01:CDS 40.0%
TTGCAATTCAAGACAGCCTA+AGG - Chr4:1531478-1531497 None:intergenic 40.0%
TTGTCAGCTGATAACAGTGT+TGG - Chr4:1531854-1531873 MsG0480018204.01.T01:three_prime_UTR 40.0%
TTTCACAGTACACTTGGTCA+GGG - Chr4:1533230-1533249 MsG0480018204.01.T01:intron 40.0%
! AACCGACATTGATTGAAGGT+AGG + Chr4:1533015-1533034 MsG0480018202.01.T01:intron 40.0%
! AATTTTCTTCATCGACCCCT+CGG + Chr4:1532873-1532892 MsG0480018202.01.T01:intron 40.0%
! CCTCTATTTCTCATTTGACG+TGG + Chr4:1530280-1530299 MsG0480018202.01.T01:intron 40.0%
! GATCAAGTTGTGTGGTCAAT+TGG - Chr4:1529279-1529298 None:intergenic 40.0%
! GCACACCTCTATCAATTTTC+CGG - Chr4:1529172-1529191 None:intergenic 40.0%
! TGCTTGTGTCCTTTTTGCAA+TGG + Chr4:1530904-1530923 MsG0480018202.01.T01:intron 40.0%
! TTCACGGTTCTTGTTGATGA+TGG + Chr4:1532396-1532415 MsG0480018202.01.T01:intron 40.0%
! TTTTCACAGTACACTTGGTC+AGG - Chr4:1533231-1533250 MsG0480018204.01.T01:intron 40.0%
!! AAAGAAGGCATTGCCTACAT+AGG + Chr4:1531319-1531338 MsG0480018202.01.T01:three_prime_UTR 40.0%
!! ACATACTTCCCTTTTTGGCA+TGG + Chr4:1530234-1530253 MsG0480018202.01.T01:intron 40.0%
!! ATACTTCCCTTTTTGGCATG+GGG + Chr4:1530236-1530255 MsG0480018202.01.T01:intron 40.0%
!! CATACTTCCCTTTTTGGCAT+GGG + Chr4:1530235-1530254 MsG0480018202.01.T01:intron 40.0%
!! CTAGAGAGTGTTACTACAGA+TGG - Chr4:1532525-1532544 MsG0480018204.01.T01:CDS 40.0%
!! CTAGGCTTGTTGAATTTCGA+TGG - Chr4:1531773-1531792 MsG0480018204.01.T01:three_prime_UTR 40.0%
!! CTTCAACAGAGGAGTTTTGA+AGG - Chr4:1532487-1532506 MsG0480018204.01.T01:CDS 40.0%
!! GTTTGTTGTAGATTGTGGTG+TGG - Chr4:1534542-1534561 MsG0480018204.01.T01:intron 40.0%
!! TCATTGAGAGCACTGAAATC+AGG + Chr4:1531985-1532004 MsG0480018202.01.T01:intron 40.0%
!! TGAATTCGCAGTGCTGATTT+AGG + Chr4:1529652-1529671 MsG0480018202.01.T01:intron 40.0%
!! TGATAACAGTGTTGGCTTGT+TGG - Chr4:1531846-1531865 MsG0480018204.01.T01:three_prime_UTR 40.0%
!!! AACAGAGGAGTTTTGAAGGA+AGG - Chr4:1532483-1532502 MsG0480018204.01.T01:CDS 40.0%
!!! CATCTATGCCCTGTTTTTTC+AGG - Chr4:1530401-1530420 None:intergenic 40.0%
AAACAAAACCTCTCCAGGGT+AGG + Chr4:1533190-1533209 MsG0480018202.01.T01:intron 45.0%
AAAGATGCAGTGCAGAACCA+CGG - Chr4:1530984-1531003 None:intergenic 45.0%
AACCGTGAAAGCTATGAGTG+AGG - Chr4:1532385-1532404 MsG0480018204.01.T01:CDS 45.0%
AACGTCTGACTCTTTCCCTT+AGG + Chr4:1532921-1532940 MsG0480018202.01.T01:intron 45.0%
ACTCACTCTTAGCTCCTGAT+TGG + Chr4:1529048-1529067 MsG0480018202.01.T01:intron 45.0%
AGAAGTGGCTTCTTCAACAG+AGG - Chr4:1532498-1532517 MsG0480018204.01.T01:CDS 45.0%
AGAGTTGCTAACATGGGCAT+TGG - Chr4:1532445-1532464 MsG0480018204.01.T01:CDS 45.0%
AGGCCAAAGAAGAACTGTTG+AGG + Chr4:1530780-1530799 MsG0480018202.01.T01:intron 45.0%
AGTACCAAGTTCAAGAGAGC+TGG - Chr4:1532034-1532053 MsG0480018204.01.T01:CDS 45.0%
ATATAGCTGTACCAGGGTAC+TGG - Chr4:1529929-1529948 None:intergenic 45.0%
CCTCTAGCAATGTTCTACTC+AGG - Chr4:1531241-1531260 None:intergenic 45.0%
CCTCTTCTTCTTGAAGTCCA+AGG - Chr4:1530808-1530827 None:intergenic 45.0%
CCTGAGTAGAACATTGCTAG+AGG + Chr4:1531238-1531257 MsG0480018202.01.T01:exon 45.0%
CCTTGGACTTCAAGAAGAAG+AGG + Chr4:1530805-1530824 MsG0480018202.01.T01:CDS 45.0%
CGGTATTGCAAATCTTTGGG+TGG - Chr4:1529691-1529710 None:intergenic 45.0%
CTCACTCTTAGCTCCTGATT+GGG + Chr4:1529049-1529068 MsG0480018202.01.T01:intron 45.0%
CTGATCCGAATGTAGAACAC+TGG - Chr4:1529733-1529752 None:intergenic 45.0%
CTTGCAGAATCATCACTTCC+CGG + Chr4:1532153-1532172 MsG0480018202.01.T01:intron 45.0%
GAAAGCTATGAGTGAGGTAG+AGG - Chr4:1532379-1532398 MsG0480018204.01.T01:CDS 45.0%
GAAGACCAGACACACGATAT+GGG + Chr4:1533441-1533460 MsG0480018202.01.T01:intron 45.0%
GACCCTCAACAGTTCTTCTT+TGG - Chr4:1530786-1530805 None:intergenic 45.0%
GACGTTACGACCAATACAAG+TGG - Chr4:1532907-1532926 MsG0480018204.01.T01:CDS 45.0%
GAGTAGAACATTGCTAGAGG+AGG + Chr4:1531241-1531260 MsG0480018202.01.T01:exon 45.0%
GGAACAAAAGAGGAAGCTAC+CGG + Chr4:1529150-1529169 MsG0480018202.01.T01:intron 45.0%
GGCCAAAGAAGAACTGTTGA+GGG + Chr4:1530781-1530800 MsG0480018202.01.T01:intron 45.0%
GGGAAGTGATGATTCTGCAA+GGG - Chr4:1532154-1532173 MsG0480018204.01.T01:CDS 45.0%
GGGTGTTCAACCACTTGTAT+TGG + Chr4:1532894-1532913 MsG0480018202.01.T01:intron 45.0%
GGTAACTTCCATGATGCCTT+AGG + Chr4:1531459-1531478 MsG0480018202.01.T01:intron 45.0%
GGTATGAACCGTACCATTCT+CGG + Chr4:1534435-1534454 MsG0480018202.01.T01:intron 45.0%
GGTGGGGACTTCAGAATTTA+AGG - Chr4:1533631-1533650 MsG0480018204.01.T01:CDS 45.0%
GGTTCCTCTCTTTGCTAACA+TGG - Chr4:1532667-1532686 MsG0480018204.01.T01:intron 45.0%
GTGATGCTTAAGCAAACCGA+TGG + Chr4:1530627-1530646 MsG0480018202.01.T01:CDS 45.0%
GTGCTCTTTGCTCTTCTGAT+TGG - Chr4:1533143-1533162 MsG0480018204.01.T01:CDS 45.0%
GTGGTGAAGAGTTGCTAACA+TGG - Chr4:1532452-1532471 MsG0480018204.01.T01:CDS 45.0%
TATTGTCCATCCACACGCAA+TGG + Chr4:1531274-1531293 MsG0480018202.01.T01:three_prime_UTR 45.0%
TCACTCTTAGCTCCTGATTG+GGG + Chr4:1529050-1529069 MsG0480018202.01.T01:intron 45.0%
TCATAAATCGTTCAGGTCCC+TGG + Chr4:1530601-1530620 MsG0480018202.01.T01:intron 45.0%
TCGTCCATGTTAGCAAAGAG+AGG + Chr4:1532660-1532679 MsG0480018202.01.T01:intron 45.0%
TCTTTATAGCGCAAGACGCA+TGG - Chr4:1534514-1534533 MsG0480018204.01.T01:CDS 45.0%
TGAAGACCAGACACACGATA+TGG + Chr4:1533440-1533459 MsG0480018202.01.T01:intron 45.0%
TGATATTGCAGTCAAGCACG+TGG + Chr4:1531172-1531191 MsG0480018202.01.T01:intron 45.0%
TGTTGTAGATTGTGGTGTGG+AGG - Chr4:1534539-1534558 MsG0480018204.01.T01:intron 45.0%
TTAATGCGGTCACTGGGATA+GGG - Chr4:1529301-1529320 None:intergenic 45.0%
TTCACAGTACACTTGGTCAG+GGG - Chr4:1533229-1533248 MsG0480018204.01.T01:intron 45.0%
TTCACCAGCTCTCTTGAACT+TGG + Chr4:1532027-1532046 MsG0480018202.01.T01:intron 45.0%
TTGCAGAATCATCACTTCCC+GGG + Chr4:1532154-1532173 MsG0480018202.01.T01:intron 45.0%
TTTAATGCGGTCACTGGGAT+AGG - Chr4:1529302-1529321 None:intergenic 45.0%
TTTCTCCAACTGTCATACCC+TGG + Chr4:1533791-1533810 MsG0480018202.01.T01:intron 45.0%
! AGCACTGAAATCAGGTTCTG+AGG + Chr4:1531993-1532012 MsG0480018202.01.T01:intron 45.0%
! AGCTATCTGGTGTTAACTGC+TGG - Chr4:1530496-1530515 None:intergenic 45.0%
! ATTTTCTTCATCGACCCCTC+GGG + Chr4:1532874-1532893 MsG0480018202.01.T01:intron 45.0%
! GACGAACCGACATTGATTGA+AGG + Chr4:1533011-1533030 MsG0480018202.01.T01:intron 45.0%
! GCACTGAAATCAGGTTCTGA+GGG + Chr4:1531994-1532013 MsG0480018202.01.T01:intron 45.0%
! TTCTTAGAAGTGCAGGTCGT+TGG + Chr4:1528694-1528713 MsG0480018202.01.T01:intron 45.0%
! TTTGACGAACTTTGAGGACC+CGG + Chr4:1532120-1532139 MsG0480018202.01.T01:intron 45.0%
!! AAATCAGGTTCTGAGGGCTT+TGG + Chr4:1532000-1532019 MsG0480018202.01.T01:intron 45.0%
!! AATCAGGTTCTGAGGGCTTT+GGG + Chr4:1532001-1532020 MsG0480018202.01.T01:intron 45.0%
!! ACTACAGATGGTGGAAGAAG+TGG - Chr4:1532513-1532532 MsG0480018204.01.T01:CDS 45.0%
!! AGTGCTGATTTAGGCCTTCT+AGG + Chr4:1529661-1529680 MsG0480018202.01.T01:intron 45.0%
!! CTGCATGGAGGAAGCATTTA+AGG - Chr4:1532224-1532243 MsG0480018204.01.T01:CDS 45.0%
!! GAGAGTGTTACTACAGATGG+TGG - Chr4:1532522-1532541 MsG0480018204.01.T01:CDS 45.0%
!! GGCATTTGCTTTAGAAGCAG+AGG - Chr4:1532358-1532377 MsG0480018204.01.T01:CDS 45.0%
!! GGTAAGCTTGCTGCAGATTT+CGG + Chr4:1532417-1532436 MsG0480018202.01.T01:intron 45.0%
!! GTGTGACACACATTTTGGTG+TGG - Chr4:1531817-1531836 MsG0480018204.01.T01:three_prime_UTR 45.0%
!! TACTTCCCTTTTTGGCATGG+GGG + Chr4:1530237-1530256 MsG0480018202.01.T01:intron 45.0%
!! TCAATCAATGTCGGTTCGTC+TGG - Chr4:1533011-1533030 MsG0480018204.01.T01:CDS 45.0%
!! TGGAAGTATCATCTGCATGG+CGG + Chr4:1531214-1531233 MsG0480018202.01.T01:CDS 45.0%
!! TGTAGATAACGGGTTCTGTG+TGG - Chr4:1533925-1533944 MsG0480018204.01.T01:intron 45.0%
!! TTAGCTTGTACACCCCAATC+AGG - Chr4:1529065-1529084 None:intergenic 45.0%
!! TATAATATTATCAAAAAATA+TGG + Chr4:1531438-1531457 MsG0480018202.01.T01:three_prime_UTR 5.0%
!!! AATTGAATATAAATAAATTT+TGG + Chr4:1534076-1534095 MsG0480018202.01.T01:intron 5.0%
AAGATGCAGTGCAGAACCAC+GGG - Chr4:1530983-1531002 None:intergenic 50.0%
ACAAGTGGTTGAACACCCGA+GGG - Chr4:1532892-1532911 MsG0480018204.01.T01:CDS 50.0%
ATGCTGAAGGACAATCGCAG+CGG + Chr4:1531905-1531924 MsG0480018202.01.T01:intron 50.0%
ATGGTGCCTCTGCCATTAGA+AGG + Chr4:1528797-1528816 MsG0480018202.01.T01:CDS 50.0%
ATGTGCCCATATCGTGTGTC+TGG - Chr4:1533449-1533468 MsG0480018204.01.T01:intron 50.0%
ATTGCAGTCAAGCACGTGGT+GGG + Chr4:1531176-1531195 MsG0480018202.01.T01:intron 50.0%
CATTCGATGACCATTGCGTG+TGG - Chr4:1531287-1531306 None:intergenic 50.0%
CGGGAAGTGATGATTCTGCA+AGG - Chr4:1532155-1532174 MsG0480018204.01.T01:CDS 50.0%
CTGACTCTTTCCCTTAGGTC+CGG + Chr4:1532926-1532945 MsG0480018202.01.T01:intron 50.0%
CTTCTGACTAGTACCTACCC+TGG - Chr4:1533206-1533225 MsG0480018204.01.T01:CDS 50.0%
GAAGAACTGTTGAGGGTCCT+TGG + Chr4:1530788-1530807 MsG0480018202.01.T01:CDS 50.0%
TACAAGTGGTTGAACACCCG+AGG - Chr4:1532893-1532912 MsG0480018204.01.T01:CDS 50.0%
TATTGCAGTCAAGCACGTGG+TGG + Chr4:1531175-1531194 MsG0480018202.01.T01:intron 50.0%
TGCTTAAGCATCACCTGCCA+GGG - Chr4:1530621-1530640 None:intergenic 50.0%
TTATAGCGCAAGACGCATGG+AGG - Chr4:1534511-1534530 MsG0480018204.01.T01:CDS 50.0%
TTGCTTAAGCATCACCTGCC+AGG - Chr4:1530622-1530641 None:intergenic 50.0%
! AGCATTTAAGGCGAAGGCGA+AGG - Chr4:1532212-1532231 MsG0480018204.01.T01:CDS 50.0%
! CAAGACAGCCTAAGGCATCA+TGG - Chr4:1531470-1531489 None:intergenic 50.0%
! GGGATAGGGATCAAGTTGTG+TGG - Chr4:1529287-1529306 None:intergenic 50.0%
! TGATGATTCTGCAAGGGCGT+TGG - Chr4:1532148-1532167 MsG0480018204.01.T01:CDS 50.0%
! TTTAAGGCGAAGGCGAAGGA+AGG - Chr4:1532208-1532227 MsG0480018204.01.T01:CDS 50.0%
!! ATCAATGTCGGTTCGTCTGG+AGG - Chr4:1533008-1533027 MsG0480018204.01.T01:CDS 50.0%
!! CGGTTTGCTGCTAATCTTCG+TGG - Chr4:1532069-1532088 MsG0480018204.01.T01:CDS 50.0%
!! GGAGGAAGCATTTAAGGCGA+AGG - Chr4:1532218-1532237 MsG0480018204.01.T01:CDS 50.0%
AAATCGTTCAGGTCCCTGGC+AGG + Chr4:1530605-1530624 MsG0480018202.01.T01:intron 55.0%
ACTCTTTCCCTTAGGTCCGG+AGG + Chr4:1532929-1532948 MsG0480018202.01.T01:intron 55.0%
AGTGCAACTCGCTTCACCCT+TGG + Chr4:1530672-1530691 MsG0480018202.01.T01:CDS 55.0%
CAAGTGGTTGAACACCCGAG+GGG - Chr4:1532891-1532910 MsG0480018204.01.T01:CDS 55.0%
CGATGACCATTGCGTGTGGA+TGG - Chr4:1531283-1531302 None:intergenic 55.0%
CGGTTCGTCTGGAGGAAATG+AGG - Chr4:1533000-1533019 MsG0480018204.01.T01:CDS 55.0%
CTTGCTTCCTCCGGACCTAA+GGG - Chr4:1532939-1532958 MsG0480018204.01.T01:CDS 55.0%
CTTTGGGTGGGAAGCCTAGA+AGG - Chr4:1529678-1529697 None:intergenic 55.0%
GACTAGTACCTACCCTGGAG+AGG - Chr4:1533201-1533220 MsG0480018204.01.T01:CDS 55.0%
GCATCATCGCTTGCTTCCTC+CGG - Chr4:1532948-1532967 MsG0480018204.01.T01:CDS 55.0%
GCGATGATGCATCCACTGCT+CGG + Chr4:1532958-1532977 MsG0480018202.01.T01:intron 55.0%
TGGGCACATGCACCTCTACA+TGG + Chr4:1533460-1533479 MsG0480018202.01.T01:intron 55.0%
! CGCAAGACGCATGGAGGTAT+TGG - Chr4:1534505-1534524 MsG0480018204.01.T01:CDS 55.0%
!! ACCAGGGTACTGGCGAAACA+CGG - Chr4:1529919-1529938 None:intergenic 55.0%
!! TTCTGCAAGGGCGTTGGTTC+CGG - Chr4:1532142-1532161 MsG0480018204.01.T01:CDS 55.0%
AAGGCGAAGGCGAAGGAAGG+AGG - Chr4:1532205-1532224 MsG0480018204.01.T01:CDS 60.0%
GCTTGCTTCCTCCGGACCTA+AGG - Chr4:1532940-1532959 MsG0480018204.01.T01:CDS 60.0%
! AAAGGCGTGACTCCGAGCAG+TGG - Chr4:1532973-1532992 MsG0480018204.01.T01:CDS 60.0%
!! TCTGCAAGGGCGTTGGTTCC+GGG - Chr4:1532141-1532160 MsG0480018204.01.T01:CDS 60.0%
GCCGTGTTTCGCCAGTACCC+TGG + Chr4:1529915-1529934 MsG0480018202.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 1528598 1534616 1528598 ID=MsG0480018202.01;Name=MsG0480018202.01
Chr4 mRNA 1528598 1534616 1528598 ID=MsG0480018202.01.T01;Parent=MsG0480018202.01;Name=MsG0480018202.01.T01;_AED=0.43;_eAED=0.48;_QI=0|0.66|0.7|1|0.44|0.4|10|344|208
Chr4 exon 1531183 1531459 1531183 ID=MsG0480018202.01.T01:exon:945;Parent=MsG0480018202.01.T01
Chr4 exon 1531481 1531574 1531481 ID=MsG0480018202.01.T01:exon:946;Parent=MsG0480018202.01.T01
Chr4 exon 1534580 1534616 1534580 ID=MsG0480018202.01.T01:exon:947;Parent=MsG0480018202.01.T01
Chr4 CDS 1528598 1528607 1528598 ID=MsG0480018202.01.T01:cds;Parent=MsG0480018202.01.T01
Chr4 CDS 1528701 1528858 1528701 ID=MsG0480018202.01.T01:cds;Parent=MsG0480018202.01.T01
Chr4 CDS 1529499 1529557 1529499 ID=MsG0480018202.01.T01:cds;Parent=MsG0480018202.01.T01
Chr4 CDS 1529663 1529765 1529663 ID=MsG0480018202.01.T01:cds;Parent=MsG0480018202.01.T01
Chr4 CDS 1529876 1529936 1529876 ID=MsG0480018202.01.T01:cds;Parent=MsG0480018202.01.T01
Chr4 CDS 1530616 1530698 1530616 ID=MsG0480018202.01.T01:cds;Parent=MsG0480018202.01.T01
Chr4 CDS 1530782 1530870 1530782 ID=MsG0480018202.01.T01:cds;Parent=MsG0480018202.01.T01
Chr4 CDS 1531183 1531246 1531183 ID=MsG0480018202.01.T01:cds;Parent=MsG0480018202.01.T01
Chr4 three_prime_UTR 1531247 1531459 1531247 ID=MsG0480018202.01.T01:three_prime_utr;Parent=MsG0480018202.01.T01
Chr4 three_prime_UTR 1531481 1531574 1531481 ID=MsG0480018202.01.T01:three_prime_utr;Parent=MsG0480018202.01.T01
Chr4 three_prime_UTR 1534580 1534616 1534580 ID=MsG0480018202.01.T01:three_prime_utr;Parent=MsG0480018202.01.T01
Chr4 mRNA 1528598 1531642 1528598 ID=MsG0480018202.01.T02;Parent=MsG0480018202.01;Name=MsG0480018202.01.T02;_AED=0.43;_eAED=0.47;_QI=0|0.62|0.66|1|0.5|0.44|9|376|208
Chr4 exon 1531183 1531600 1531183 ID=MsG0480018202.01.T02:exon:948;Parent=MsG0480018202.01.T02
Chr4 exon 1531621 1531642 1531621 ID=MsG0480018202.01.T02:exon:949;Parent=MsG0480018202.01.T02
Chr4 CDS 1528598 1528607 1528598 ID=MsG0480018202.01.T02:cds;Parent=MsG0480018202.01.T02
Chr4 CDS 1528701 1528858 1528701 ID=MsG0480018202.01.T02:cds;Parent=MsG0480018202.01.T02
Chr4 CDS 1529499 1529557 1529499 ID=MsG0480018202.01.T02:cds;Parent=MsG0480018202.01.T02
Chr4 CDS 1529663 1529765 1529663 ID=MsG0480018202.01.T02:cds;Parent=MsG0480018202.01.T02
Chr4 CDS 1529876 1529936 1529876 ID=MsG0480018202.01.T02:cds;Parent=MsG0480018202.01.T02
Chr4 CDS 1530616 1530698 1530616 ID=MsG0480018202.01.T02:cds;Parent=MsG0480018202.01.T02
Chr4 CDS 1530782 1530870 1530782 ID=MsG0480018202.01.T02:cds;Parent=MsG0480018202.01.T02
Chr4 CDS 1531183 1531246 1531183 ID=MsG0480018202.01.T02:cds;Parent=MsG0480018202.01.T02
Chr4 three_prime_UTR 1531247 1531600 1531247 ID=MsG0480018202.01.T02:three_prime_utr;Parent=MsG0480018202.01.T02
Chr4 three_prime_UTR 1531621 1531642 1531621 ID=MsG0480018202.01.T02:three_prime_utr;Parent=MsG0480018202.01.T02
Gene Sequence

>MsG0480018202.01.T01

ATGCGTTACAAAGTGCAGGTCGTTGGCAGTCAAGTGAACCTCCATCGCTCTACATATTCATTAATAGCAGTACACGTGAACTTGGTTATATTGAGAAGTATGTGGGATGGTGCCTCTGCCATTAGAAGGTTTCATGATTTTTTATCTGTTCGGTATCAAATCTTTGACGAAAAATTTGCTCCATCAACCCCAACACTTTTATTTAATCTTGAGCTAGATACACTACGTGCTGATTTAGGCCTTCTAGGCTTCCCACCCAAAGATTTGCAATACCGCTTTCTTTCTCAATTTACTCCAGTGTTCTACATTCGGATCAGAGATTATTCAAAGACAGTTGCAGTAGCACCTTATATTGTCAATTACAGTGGAGCCGTGTTTCGCCAGTACCCTGGTCCCTGGCAGGTGATGCTTAAGCAAACCGATGGTTCTTATGCTTGTGTAGCAGAAAGTGCAACTCGCTTCACCCTTGGTGAAGCCAAAGAAGAACTGTTGAGGGTCCTTGGACTTCAAGAAGAAGAGGGAAGCTCTCTAGAATTTCTACGAAGAGGCTATAGGGTATTCTTTCAAGCACGTGGTGGGAAGAAGATTCTGATTTGGAAGTATCATCTGCATGGCGGACCTGAGTAG

>MsG0480018202.01.T02

ATGCGTTACAAAGTGCAGGTCGTTGGCAGTCAAGTGAACCTCCATCGCTCTACATATTCATTAATAGCAGTACACGTGAACTTGGTTATATTGAGAAGTATGTGGGATGGTGCCTCTGCCATTAGAAGGTTTCATGATTTTTTATCTGTTCGGTATCAAATCTTTGACGAAAAATTTGCTCCATCAACCCCAACACTTTTATTTAATCTTGAGCTAGATACACTACGTGCTGATTTAGGCCTTCTAGGCTTCCCACCCAAAGATTTGCAATACCGCTTTCTTTCTCAATTTACTCCAGTGTTCTACATTCGGATCAGAGATTATTCAAAGACAGTTGCAGTAGCACCTTATATTGTCAATTACAGTGGAGCCGTGTTTCGCCAGTACCCTGGTCCCTGGCAGGTGATGCTTAAGCAAACCGATGGTTCTTATGCTTGTGTAGCAGAAAGTGCAACTCGCTTCACCCTTGGTGAAGCCAAAGAAGAACTGTTGAGGGTCCTTGGACTTCAAGAAGAAGAGGGAAGCTCTCTAGAATTTCTACGAAGAGGCTATAGGGTATTCTTTCAAGCACGTGGTGGGAAGAAGATTCTGATTTGGAAGTATCATCTGCATGGCGGACCTGAGTAG

Protein sequence

>MsG0480018202.01.T01

MRYKVQVVGSQVNLHRSTYSLIAVHVNLVILRSMWDGASAIRRFHDFLSVRYQIFDEKFAPSTPTLLFNLELDTLRADLGLLGFPPKDLQYRFLSQFTPVFYIRIRDYSKTVAVAPYIVNYSGAVFRQYPGPWQVMLKQTDGSYACVAESATRFTLGEAKEELLRVLGLQEEEGSSLEFLRRGYRVFFQARGGKKILIWKYHLHGGPE*

>MsG0480018202.01.T02

MRYKVQVVGSQVNLHRSTYSLIAVHVNLVILRSMWDGASAIRRFHDFLSVRYQIFDEKFAPSTPTLLFNLELDTLRADLGLLGFPPKDLQYRFLSQFTPVFYIRIRDYSKTVAVAPYIVNYSGAVFRQYPGPWQVMLKQTDGSYACVAESATRFTLGEAKEELLRVLGLQEEEGSSLEFLRRGYRVFFQARGGKKILIWKYHLHGGPE*