AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004580.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004580.01.T01 MTR_1g082900 71.154 104 2 1 46 149 96 171 7.68e-40 137
MsG0180004580.01.T01 MTR_1g082900 70.476 105 3 1 45 149 95 171 3.26e-39 137
MsG0180004580.01.T01 MTR_1g082900 85.714 35 5 0 146 180 259 293 1.64e-14 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004580.01.T01 AT5G27560 59.048 105 15 1 45 149 110 186 4.95e-31 115
MsG0180004580.01.T01 AT5G27560 59.048 105 15 1 45 149 110 186 4.95e-31 115
MsG0180004580.01.T01 AT5G27560 59.048 105 15 1 45 149 110 186 4.95e-31 115
MsG0180004580.01.T01 AT5G27560 59.048 105 15 1 45 149 110 186 5.71e-31 115

Find 47 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGCAAGCAAATATCTATT+TGG 0.206377 1:+79928708 None:intergenic
CTCAAACTTGGCGCCAAGTT+TGG 0.262372 1:+79931365 None:intergenic
CTGCGTCATCCCAATCAAAT+TGG 0.337430 1:-79930887 MsG0180004580.01.T01:CDS
ACCTCAATATCTTCAGTATC+AGG 0.376552 1:+79928669 None:intergenic
ATTACTGCACCTTCCAAGTC+TGG 0.380610 1:+79931173 None:intergenic
ATCAGGGCCTCCAATTTGAT+TGG 0.385831 1:+79930877 None:intergenic
AGAGCTGCAGCACCGGCATC+TGG 0.389473 1:+79930388 None:intergenic
TCCACCTCCACCTCCAAACT+TGG 0.392380 1:-79931378 MsG0180004580.01.T01:CDS
ACCTTGGAATTTCTCAAACT+TGG 0.396675 1:+79931353 None:intergenic
CTGCAGCTCTTCTAAAATAT+CGG 0.417986 1:-79930375 MsG0180004580.01.T01:CDS
AAGGCGCACAGTTGGAGCTC+TGG 0.422719 1:-79930973 MsG0180004580.01.T01:CDS
TACCGCATCATTGTATCTTC+AGG 0.427113 1:-79931135 MsG0180004580.01.T01:CDS
AAACTAAATGTCAGGTTAGT+GGG 0.442295 1:-79930913 MsG0180004580.01.T01:CDS
TGCAGTAATACAATCAAGTC+AGG 0.453229 1:-79931159 MsG0180004580.01.T01:CDS
CAGTTGTTTACCTCCAGACT+TGG 0.469645 1:-79931186 MsG0180004580.01.T01:CDS
GCCAAGTTTGGAGGTGGAGG+TGG 0.474503 1:+79931377 None:intergenic
GGCGCCAAGTTTGGAGGTGG+AGG 0.475987 1:+79931374 None:intergenic
TCAGGGCCTCCAATTTGATT+GGG 0.476534 1:+79930878 None:intergenic
GCGAAGGGAAATTCTTCCAT+TGG 0.484219 1:+79931410 None:intergenic
TATTCAAGAAACTAAATGTC+AGG 0.484409 1:-79930921 MsG0180004580.01.T01:CDS
GAAACTAAATGTCAGGTTAG+TGG 0.484860 1:-79930914 MsG0180004580.01.T01:CDS
AAGTTTGGAGGTGGAGGTGG+AGG 0.487859 1:+79931380 None:intergenic
AAACTTGGCGCCAAGTTTGG+AGG 0.491870 1:+79931368 None:intergenic
AGGTGGAGGTTGAAGAGCGA+AGG 0.495518 1:+79931394 None:intergenic
ATCTTCAGTATCAGGACGGT+TGG 0.519070 1:+79928677 None:intergenic
CGTCATCCCAATCAAATTGG+AGG 0.525093 1:-79930884 MsG0180004580.01.T01:CDS
AGACGATGAAGGCGCACAGT+TGG 0.532946 1:-79930981 MsG0180004580.01.T01:CDS
CTTGGCGCCAAGTTTGGAGG+TGG 0.536310 1:+79931371 None:intergenic
AGGCGCACAGTTGGAGCTCT+GGG 0.537017 1:-79930972 MsG0180004580.01.T01:CDS
TCCTGATACTGAAGATATTG+AGG 0.543903 1:-79928670 MsG0180004580.01.T01:CDS
AGCACCGGCATCTGGAAATA+CGG 0.545922 1:+79930396 None:intergenic
GGTGGAGGTTGAAGAGCGAA+GGG 0.546997 1:+79931395 None:intergenic
TGGAGCTCTGGGAATTGTCA+AGG 0.547143 1:-79930961 MsG0180004580.01.T01:CDS
CTCGAATTCTTAGACGATGA+AGG 0.553819 1:-79930992 MsG0180004580.01.T01:CDS
CGCATCATTGTATCTTCAGG+AGG 0.562793 1:-79931132 MsG0180004580.01.T01:CDS
TGTTCAGTGATGACAAGGAT+AGG 0.572733 1:-79928731 MsG0180004580.01.T01:CDS
AACTAAATGTCAGGTTAGTG+GGG 0.585860 1:-79930912 MsG0180004580.01.T01:CDS
GCCAAGTTTGAGAAATTCCA+AGG 0.586495 1:-79931354 MsG0180004580.01.T01:intron
TGTTTACCTCCAGACTTGGA+AGG 0.589318 1:-79931182 MsG0180004580.01.T01:CDS
CAGCTCTTCTAAAATATCGG+TGG 0.611070 1:-79930372 MsG0180004580.01.T01:CDS
AAAGCCGTATTTCCAGATGC+CGG 0.614566 1:-79930400 MsG0180004580.01.T01:CDS
TCGTCTAAGAATTCGAGTTG+AGG 0.622785 1:+79930998 None:intergenic
GCATCATTGTATCTTCAGGA+GGG 0.647893 1:-79931131 MsG0180004580.01.T01:CDS
CAATATCTTCAGTATCAGGA+CGG 0.662055 1:+79928673 None:intergenic
GAAAGTGTTCAGTGATGACA+AGG 0.693169 1:-79928736 MsG0180004580.01.T01:CDS
CTCCTGAAGATACAATGATG+CGG 0.695725 1:+79931133 None:intergenic
ACTGCACCTTCCAAGTCTGG+AGG 0.699886 1:+79931176 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATATAAATGACAA+GGG - Chr1:79930245-79930264 MsG0180004580.01.T01:intron 10.0%
!! TAAAAAAAATATAAATGACA+AGG - Chr1:79930244-79930263 MsG0180004580.01.T01:intron 10.0%
!! AAGTGAAAGAAAAATATATT+TGG + Chr1:79928960-79928979 None:intergenic 15.0%
!! ATGTATATAATAATCCTTAT+GGG + Chr1:79930988-79931007 None:intergenic 15.0%
!! TAAATATATAGGGTTAATAT+AGG - Chr1:79929424-79929443 MsG0180004580.01.T01:intron 15.0%
!! TAAATGATTAAGGTTATTAT+AGG + Chr1:79929373-79929392 None:intergenic 15.0%
!! TATTAACCCTATATATTTAT+TGG + Chr1:79929423-79929442 None:intergenic 15.0%
!!! AATGAAGTATTAAATGATTA+AGG + Chr1:79929383-79929402 None:intergenic 15.0%
!!! TACATCTTATTTTGAATAAT+TGG - Chr1:79930831-79930850 MsG0180004580.01.T01:intron 15.0%
!!! TTTGTTATTTCTTTTCTTTT+CGG - Chr1:79930676-79930695 MsG0180004580.01.T01:intron 15.0%
!! AAAATATATTTGGAAGTAGT+TGG + Chr1:79928950-79928969 None:intergenic 20.0%
!! AATAGACAAGAAATAATAGA+TGG + Chr1:79931261-79931280 None:intergenic 20.0%
!! CAATGCAAATTAAAATATAC+TGG + Chr1:79929860-79929879 None:intergenic 20.0%
!! CATGTATATAATAATCCTTA+TGG + Chr1:79930989-79931008 None:intergenic 20.0%
!! TCAAAATGTGACAATTAAAA+AGG + Chr1:79929287-79929306 None:intergenic 20.0%
!!! AATAAAAGTATTTGTTGTCT+TGG + Chr1:79929323-79929342 None:intergenic 20.0%
!!! CCATTTTTAATATAAGATCA+GGG + Chr1:79929178-79929197 None:intergenic 20.0%
!!! TCCATTTTTAATATAAGATC+AGG + Chr1:79929179-79929198 None:intergenic 20.0%
! AACATGCACAATTATTTGTT+TGG - Chr1:79929904-79929923 MsG0180004580.01.T01:intron 25.0%
! AAGTCAAAATCATTTACAGA+CGG + Chr1:79931197-79931216 None:intergenic 25.0%
! AAGTGACAATTATAAAGGAA+CGG - Chr1:79929516-79929535 MsG0180004580.01.T01:intron 25.0%
! AATGATATAAGTTAGTAGTC+TGG + Chr1:79930872-79930891 None:intergenic 25.0%
! ACCCTACTGATAAAAAATTA+GGG - Chr1:79929198-79929217 MsG0180004580.01.T01:intron 25.0%
! ATATAATAATCCTTATGGGA+GGG + Chr1:79930984-79931003 None:intergenic 25.0%
! ATGAAAAAGTAAGAATTCAG+TGG + Chr1:79929798-79929817 None:intergenic 25.0%
! CAAAAGACTTTAGATATGTT+TGG - Chr1:79930538-79930557 MsG0180004580.01.T01:intron 25.0%
! CCCTGATCTTATATTAAAAA+TGG - Chr1:79929175-79929194 MsG0180004580.01.T01:intron 25.0%
! CTAGCAATATATAAATTCTG+AGG - Chr1:79930746-79930765 MsG0180004580.01.T01:intron 25.0%
! TATATAATAATCCTTATGGG+AGG + Chr1:79930985-79931004 None:intergenic 25.0%
! TATTCAAGAAACTAAATGTC+AGG - Chr1:79929115-79929134 MsG0180004580.01.T01:intron 25.0%
! TCTCTGCCAATAAATATATA+GGG - Chr1:79929414-79929433 MsG0180004580.01.T01:intron 25.0%
! TGCAAAAGTGACAATTATAA+AGG - Chr1:79929511-79929530 MsG0180004580.01.T01:intron 25.0%
! TTAACAACCATCTTAATTAC+AGG - Chr1:79929001-79929020 MsG0180004580.01.T01:intron 25.0%
! TTTGCAAGCAAATATCTATT+TGG + Chr1:79931331-79931350 None:intergenic 25.0%
!! ACATAAAGCATTAATCAATG+TGG + Chr1:79929726-79929745 None:intergenic 25.0%
!! ATTATTTCTTGTCTATTGTC+TGG - Chr1:79931264-79931283 MsG0180004580.01.T01:intron 25.0%
!! GTTCAAAGTATCATTAAATG+TGG + Chr1:79929455-79929474 None:intergenic 25.0%
!! TGTATGATTGTCTGAAATTT+AGG + Chr1:79930650-79930669 None:intergenic 25.0%
!!! AGTTAAGGCAATACTTTTTA+AGG - Chr1:79930487-79930506 MsG0180004580.01.T01:intron 25.0%
!!! CAAACATATCTAAAGTCTTT+TGG + Chr1:79930540-79930559 None:intergenic 25.0%
!!! TAAAGTCTTTTGGAAAGAAA+TGG + Chr1:79930530-79930549 None:intergenic 25.0%
!!! TAGTTTTTCAAATGTTAACC+AGG - Chr1:79930602-79930621 MsG0180004580.01.T01:intron 25.0%
!!! TTTACTTATGGCTTGTTTTT+GGG + Chr1:79931120-79931139 None:intergenic 25.0%
!!! TTTTACTTATGGCTTGTTTT+TGG + Chr1:79931121-79931140 None:intergenic 25.0%
!!! TTTTAGCTCTATTCTTATGT+TGG + Chr1:79930229-79930248 None:intergenic 25.0%
AAACTAAATGTCAGGTTAGT+GGG - Chr1:79929123-79929142 MsG0180004580.01.T01:intron 30.0%
AAATGATACCATTATGTACC+TGG + Chr1:79930623-79930642 None:intergenic 30.0%
AATGTTAACCAGGTACATAA+TGG - Chr1:79930612-79930631 MsG0180004580.01.T01:intron 30.0%
AGTTCAACCTGTAATTAAGA+TGG + Chr1:79929011-79929030 None:intergenic 30.0%
ATGCACAATTATTTGTTTGG+TGG - Chr1:79929907-79929926 MsG0180004580.01.T01:intron 30.0%
ATGCAGACTATCTGAAAATT+AGG + Chr1:79931032-79931051 None:intergenic 30.0%
CATTTCACTTGAGAATTTGA+TGG - Chr1:79929815-79929834 MsG0180004580.01.T01:intron 30.0%
CCCTACTGATAAAAAATTAG+GGG - Chr1:79929199-79929218 MsG0180004580.01.T01:intron 30.0%
CTCTCTGCCAATAAATATAT+AGG - Chr1:79929413-79929432 MsG0180004580.01.T01:intron 30.0%
GACAATTAAAAAGGAACAGA+GGG + Chr1:79929278-79929297 None:intergenic 30.0%
GACCCTACTGATAAAAAATT+AGG - Chr1:79929197-79929216 MsG0180004580.01.T01:intron 30.0%
GATGGTTGTTAAAAATTGAG+TGG + Chr1:79928993-79929012 None:intergenic 30.0%
TATAATAATCCTTATGGGAG+GGG + Chr1:79930983-79931002 None:intergenic 30.0%
TATTCATATATTTGCAGCCA+AGG - Chr1:79930400-79930419 MsG0180004580.01.T01:CDS 30.0%
TATTCTAACATCTGATGATC+AGG + Chr1:79929994-79930013 None:intergenic 30.0%
TGACAATTAAAAAGGAACAG+AGG + Chr1:79929279-79929298 None:intergenic 30.0%
TGTTAAAAATTGAGTGGAAG+CGG + Chr1:79928987-79929006 None:intergenic 30.0%
TTCACATTTCTATCATGATG+AGG + Chr1:79930156-79930175 None:intergenic 30.0%
! TAAAGCATTAATCAATGTGG+TGG + Chr1:79929723-79929742 None:intergenic 30.0%
!! ACCACTTTTGGATTTAAAAG+TGG - Chr1:79931140-79931159 MsG0180004580.01.T01:CDS 30.0%
!! TCCAAAAGTGGTTTTACTTA+TGG + Chr1:79931132-79931151 None:intergenic 30.0%
!! TCCACTTTTAAATCCAAAAG+TGG + Chr1:79931144-79931163 None:intergenic 30.0%
!! TGTAATGATAGTTTCTAGTG+AGG + Chr1:79928731-79928750 None:intergenic 30.0%
!!! ACCCCTAATTTTTTATCAGT+AGG + Chr1:79929203-79929222 None:intergenic 30.0%
!!! ATGCTTTGTTTAGTTTTGCA+AGG - Chr1:79929691-79929710 MsG0180004580.01.T01:intron 30.0%
!!! CCCCTAATTTTTTATCAGTA+GGG + Chr1:79929202-79929221 None:intergenic 30.0%
AACTAAATGTCAGGTTAGTG+GGG - Chr1:79929124-79929143 MsG0180004580.01.T01:intron 35.0%
ACCTCAATATCTTCAGTATC+AGG + Chr1:79931370-79931389 None:intergenic 35.0%
ACCTTGGAATTTCTCAAACT+TGG + Chr1:79928686-79928705 None:intergenic 35.0%
ATACTATGCAGAGTTAACCA+TGG + Chr1:79931085-79931104 None:intergenic 35.0%
CAATATCTTCAGTATCAGGA+CGG + Chr1:79931366-79931385 None:intergenic 35.0%
CTATAATGCAGAGTTAACCA+TGG + Chr1:79931055-79931074 None:intergenic 35.0%
CTATCTGAAAATTAGGAGCA+AGG + Chr1:79931025-79931044 None:intergenic 35.0%
GAAACTAAATGTCAGGTTAG+TGG - Chr1:79929122-79929141 MsG0180004580.01.T01:intron 35.0%
GAAGTAGTTGGAACATACAA+TGG + Chr1:79928938-79928957 None:intergenic 35.0%
GACAATTATAAAGGAACGGA+GGG - Chr1:79929520-79929539 MsG0180004580.01.T01:intron 35.0%
GAGCTCTGTTCTATCTTTAA+CGG - Chr1:79930060-79930079 MsG0180004580.01.T01:intron 35.0%
GATATAATGTACGGCAGTTA+AGG - Chr1:79930472-79930491 MsG0180004580.01.T01:intron 35.0%
GTAGTAGTAGTAATACCTGT+CGG + Chr1:79928770-79928789 None:intergenic 35.0%
TATCAAAACACAAGAATGCG+TGG + Chr1:79930360-79930379 None:intergenic 35.0%
TCCTGATACTGAAGATATTG+AGG - Chr1:79931366-79931385 MsG0180004580.01.T01:CDS 35.0%
TGACAATTATAAAGGAACGG+AGG - Chr1:79929519-79929538 MsG0180004580.01.T01:intron 35.0%
TGCAGTAATACAATCAAGTC+AGG - Chr1:79928877-79928896 MsG0180004580.01.T01:intron 35.0%
TTACTCTGACAAAATAGCTG+CGG - Chr1:79929759-79929778 MsG0180004580.01.T01:intron 35.0%
! AATTCCATCAAGTTGTCACA+TGG + Chr1:79930132-79930151 None:intergenic 35.0%
! GCCATAAGTAAAACCACTTT+TGG - Chr1:79931128-79931147 MsG0180004580.01.T01:CDS 35.0%
!! AATGATAGTTTCTAGTGAGG+AGG + Chr1:79928728-79928747 None:intergenic 35.0%
!! CTGCAGCTCTTCTAAAATAT+CGG - Chr1:79929661-79929680 MsG0180004580.01.T01:intron 35.0%
!! TCTTTTGGAAAGAAATGGCT+TGG + Chr1:79930525-79930544 None:intergenic 35.0%
!!! ATTGTCTGGTTTTCAGATTG+TGG - Chr1:79931278-79931297 MsG0180004580.01.T01:intron 35.0%
AACAGAGCTCAGAGATTTAC+TGG + Chr1:79930050-79930069 None:intergenic 40.0%
AAGATAAAGACGAAACCGAC+AGG - Chr1:79928752-79928771 MsG0180004580.01.T01:intron 40.0%
AAGCTTTCGATCACTTAAGC+TGG + Chr1:79929937-79929956 None:intergenic 40.0%
AATACTGCACCAAATGGCAT+AGG + Chr1:79930933-79930952 None:intergenic 40.0%
CCAACAATGTGCGAATTTCA+CGG + Chr1:79931173-79931192 None:intergenic 40.0%
CTCCTGAAGATACAATGATG+CGG + Chr1:79928906-79928925 None:intergenic 40.0%
CTCGAATTCTTAGACGATGA+AGG - Chr1:79929044-79929063 MsG0180004580.01.T01:intron 40.0%
GCATCATTGTATCTTCAGGA+GGG - Chr1:79928905-79928924 MsG0180004580.01.T01:intron 40.0%
GCCAAGTTTGAGAAATTCCA+AGG - Chr1:79928682-79928701 MsG0180004580.01.T01:CDS 40.0%
TACCGCATCATTGTATCTTC+AGG - Chr1:79928901-79928920 MsG0180004580.01.T01:intron 40.0%
TCGGGGTTGGATATAATGTA+CGG - Chr1:79930463-79930482 MsG0180004580.01.T01:intron 40.0%
TGATCGAAAGCTTGTAGTAG+TGG - Chr1:79929944-79929963 MsG0180004580.01.T01:intron 40.0%
TGCATTATAGTCTGCATCCA+TGG - Chr1:79931065-79931084 MsG0180004580.01.T01:intron 40.0%
TGTTCAGTGATGACAAGGAT+AGG - Chr1:79931305-79931324 MsG0180004580.01.T01:intron 40.0%
TTTCAGATAGTCTGCATCCA+TGG - Chr1:79931035-79931054 MsG0180004580.01.T01:intron 40.0%
! CAAATGCACGTTTGTCGTTT+GGG - Chr1:79930571-79930590 MsG0180004580.01.T01:intron 40.0%
! GGAATTGTCAAGGCTTTTCT+TGG - Chr1:79929085-79929104 MsG0180004580.01.T01:intron 40.0%
! TTGTAGTAGTGGTGATGAGA+TGG - Chr1:79929955-79929974 MsG0180004580.01.T01:intron 40.0%
!! ATGCCATTTGGTGCAGTATT+CGG - Chr1:79930933-79930952 MsG0180004580.01.T01:CDS 40.0%
!! ATTCGGTGTTATCCAGAGTA+AGG - Chr1:79930950-79930969 MsG0180004580.01.T01:CDS 40.0%
!! CAGCTCTTCTAAAATATCGG+TGG - Chr1:79929664-79929683 MsG0180004580.01.T01:intron 40.0%
!! GAAAGTGTTCAGTGATGACA+AGG - Chr1:79931300-79931319 MsG0180004580.01.T01:intron 40.0%
!! TCGTCTAAGAATTCGAGTTG+AGG + Chr1:79929041-79929060 None:intergenic 40.0%
!!! GCTTGTTTTTGGGTGATCTA+GGG + Chr1:79931110-79931129 None:intergenic 40.0%
AAAGCCGTATTTCCAGATGC+CGG - Chr1:79929636-79929655 MsG0180004580.01.T01:intron 45.0%
AAGGAACGGAGGGAGTAATT+TGG - Chr1:79929530-79929549 MsG0180004580.01.T01:intron 45.0%
ACACCGAATACTGCACCAAA+TGG + Chr1:79930939-79930958 None:intergenic 45.0%
ACAGCCATGTGACAACTTGA+TGG - Chr1:79930125-79930144 MsG0180004580.01.T01:intron 45.0%
ATCAGGGCCTCCAATTTGAT+TGG + Chr1:79929162-79929181 None:intergenic 45.0%
ATCCTTATGGGAGGGGAAAA+AGG + Chr1:79930976-79930995 None:intergenic 45.0%
ATCTTCAGTATCAGGACGGT+TGG + Chr1:79931362-79931381 None:intergenic 45.0%
ATTACTGCACCTTCCAAGTC+TGG + Chr1:79928866-79928885 None:intergenic 45.0%
CAGTTGTTTACCTCCAGACT+TGG - Chr1:79928850-79928869 MsG0180004580.01.T01:intron 45.0%
CATATGCGACCTATGCCATT+TGG - Chr1:79930921-79930940 MsG0180004580.01.T01:CDS 45.0%
CCGTGAAATTCGCACATTGT+TGG - Chr1:79931170-79931189 MsG0180004580.01.T01:CDS 45.0%
CCTGTATAGCAAAGATGTCG+GGG - Chr1:79930446-79930465 MsG0180004580.01.T01:intron 45.0%
CGCATCATTGTATCTTCAGG+AGG - Chr1:79928904-79928923 MsG0180004580.01.T01:intron 45.0%
CGCCTGTATAGCAAAGATGT+CGG - Chr1:79930444-79930463 MsG0180004580.01.T01:intron 45.0%
CGTCATCCCAATCAAATTGG+AGG - Chr1:79929152-79929171 MsG0180004580.01.T01:intron 45.0%
CGTGGATTCCACATGATAAG+GGG + Chr1:79930426-79930445 None:intergenic 45.0%
CTGCGTCATCCCAATCAAAT+TGG - Chr1:79929149-79929168 MsG0180004580.01.T01:intron 45.0%
GCAAATGCACGTTTGTCGTT+TGG - Chr1:79930570-79930589 MsG0180004580.01.T01:intron 45.0%
GCCTGTATAGCAAAGATGTC+GGG - Chr1:79930445-79930464 MsG0180004580.01.T01:intron 45.0%
GCGTGGATTCCACATGATAA+GGG + Chr1:79930427-79930446 None:intergenic 45.0%
TATAGCAAAGATGTCGGGGT+TGG - Chr1:79930450-79930469 MsG0180004580.01.T01:intron 45.0%
TCAGGGCCTCCAATTTGATT+GGG + Chr1:79929161-79929180 None:intergenic 45.0%
TGTTTACCTCCAGACTTGGA+AGG - Chr1:79928854-79928873 MsG0180004580.01.T01:intron 45.0%
! ACATCTTTGCTATACAGGCG+TGG + Chr1:79930444-79930463 None:intergenic 45.0%
! TAGTAGTGGTGATGAGATGG+TGG - Chr1:79929958-79929977 MsG0180004580.01.T01:intron 45.0%
!! GTTTCTAGTGAGGAGGATGA+AGG + Chr1:79928721-79928740 None:intergenic 45.0%
!! TTTTAGAAGAGCTGCAGCAC+CGG + Chr1:79929658-79929677 None:intergenic 45.0%
!!! GGCTTGTTTTTGGGTGATCT+AGG + Chr1:79931111-79931130 None:intergenic 45.0%
AAACTTGGCGCCAAGTTTGG+AGG + Chr1:79928671-79928690 None:intergenic 50.0%
AGGGGAAAAAGGCCTTACTC+TGG + Chr1:79930965-79930984 None:intergenic 50.0%
CTCAAACTTGGCGCCAAGTT+TGG + Chr1:79928674-79928693 None:intergenic 50.0%
CTGGACAGATTGCATCAGCA+TGG + Chr1:79929841-79929860 None:intergenic 50.0%
GGCGTGGATTCCACATGATA+AGG + Chr1:79930428-79930447 None:intergenic 50.0%
TCTAGTGAGGAGGATGAAGG+AGG + Chr1:79928718-79928737 None:intergenic 50.0%
TTCCACATGATAAGGGGCCT+TGG + Chr1:79930420-79930439 None:intergenic 50.0%
! AAGGAGGTTCAGGTTCACCT+TGG + Chr1:79928702-79928721 None:intergenic 50.0%
! CCCCGACATCTTTGCTATAC+AGG + Chr1:79930449-79930468 None:intergenic 50.0%
! TGCACGTTTGTCGTTTGGGT+AGG - Chr1:79930575-79930594 MsG0180004580.01.T01:intron 50.0%
!! AGCACCGGCATCTGGAAATA+CGG + Chr1:79929643-79929662 None:intergenic 50.0%
!! TGGAGCTCTGGGAATTGTCA+AGG - Chr1:79929075-79929094 MsG0180004580.01.T01:intron 50.0%
AAGTTTGGAGGTGGAGGTGG+AGG + Chr1:79928659-79928678 None:intergenic 55.0%
ACTGCACCTTCCAAGTCTGG+AGG + Chr1:79928863-79928882 None:intergenic 55.0%
AGCCAAGGCCCCTTATCATG+TGG - Chr1:79930415-79930434 MsG0180004580.01.T01:intron 55.0%
AGGTGGAGGTTGAAGAGCGA+AGG + Chr1:79928645-79928664 None:intergenic 55.0%
GAGGAGGATGAAGGAGGTTC+AGG + Chr1:79928712-79928731 None:intergenic 55.0%
GGTGGAGGTTGAAGAGCGAA+GGG + Chr1:79928644-79928663 None:intergenic 55.0%
TCCACCTCCACCTCCAAACT+TGG - Chr1:79928658-79928677 MsG0180004580.01.T01:CDS 55.0%
! AGACGATGAAGGCGCACAGT+TGG - Chr1:79929055-79929074 MsG0180004580.01.T01:intron 55.0%
! GGCCTTTTTCCCCTCCCATA+AGG - Chr1:79930971-79930990 MsG0180004580.01.T01:CDS 55.0%
AAGGCGCACAGTTGGAGCTC+TGG - Chr1:79929063-79929082 MsG0180004580.01.T01:intron 60.0%
AGGCGCACAGTTGGAGCTCT+GGG - Chr1:79929064-79929083 MsG0180004580.01.T01:intron 60.0%
CTTGGCGCCAAGTTTGGAGG+TGG + Chr1:79928668-79928687 None:intergenic 60.0%
GCCAAGTTTGGAGGTGGAGG+TGG + Chr1:79928662-79928681 None:intergenic 60.0%
GGCGCCAAGTTTGGAGGTGG+AGG + Chr1:79928665-79928684 None:intergenic 65.0%
!! AGAGCTGCAGCACCGGCATC+TGG + Chr1:79929651-79929670 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 79928629 79931429 79928629 ID=MsG0180004580.01;Name=MsG0180004580.01
Chr1 mRNA 79928629 79931429 79928629 ID=MsG0180004580.01.T01;Parent=MsG0180004580.01;Name=MsG0180004580.01.T01;_AED=0.49;_eAED=0.59;_QI=0|0.25|0.4|1|1|1|5|0|192
Chr1 exon 79931355 79931429 79931355 ID=MsG0180004580.01.T01:exon:15547;Parent=MsG0180004580.01.T01
Chr1 exon 79931119 79931205 79931119 ID=MsG0180004580.01.T01:exon:15546;Parent=MsG0180004580.01.T01
Chr1 exon 79930838 79931035 79930838 ID=MsG0180004580.01.T01:exon:15545;Parent=MsG0180004580.01.T01
Chr1 exon 79930346 79930428 79930346 ID=MsG0180004580.01.T01:exon:15544;Parent=MsG0180004580.01.T01
Chr1 exon 79928629 79928764 79928629 ID=MsG0180004580.01.T01:exon:15543;Parent=MsG0180004580.01.T01
Chr1 CDS 79931355 79931429 79931355 ID=MsG0180004580.01.T01:cds;Parent=MsG0180004580.01.T01
Chr1 CDS 79931119 79931205 79931119 ID=MsG0180004580.01.T01:cds;Parent=MsG0180004580.01.T01
Chr1 CDS 79930838 79931035 79930838 ID=MsG0180004580.01.T01:cds;Parent=MsG0180004580.01.T01
Chr1 CDS 79930346 79930428 79930346 ID=MsG0180004580.01.T01:cds;Parent=MsG0180004580.01.T01
Chr1 CDS 79928629 79928764 79928629 ID=MsG0180004580.01.T01:cds;Parent=MsG0180004580.01.T01
Gene Sequence

>MsG0180004580.01.T01

ATGGAAGAATTTCCCTTCGCTCTTCAACCTCCACCTCCACCTCCAAACTTGGCGCCAAGTTTGAGAAATTCCAAGTTGTTTACCTCCAGACTTGGAAGGTGCAGTAATACAATCAAGTCAGGCTACCGCATCATTGTATCTTCAGGAGGGATGAGAGCCATTGTTGAACTTTTAATTCCTCAACTCGAATTCTTAGACGATGAAGGCGCACAGTTGGAGCTCTGGGAATTGTCAAGGCTTTTCTTGGATACACTTATTCAAGAAACTAAATGTCAGGTTAGTGGGGTGCTGCGTCATCCCAATCAAATTGGAGGCCCTGATCTTATATTAAAAATGGACCCTACTGATAAAAAATTAGGGAAAGTTAAAGCCGTATTTCCAGATGCCGGTGCTGCAGCTCTTCTAAAATATCGGTGGAAAGATGCTTTGTTTAGTTTTGCAAGATTGTGGAAAGTGTTCAGTGATGACAAGGATAGGCCAAATAGATATTTGCTTGCAAAAGAATATGCCAACCGTCCTGATACTGAAGATATTGAGGTTAGTAGCTTCATCTTTAATACCTTGCTAGATATACTTTAA

Protein sequence

>MsG0180004580.01.T01

MEEFPFALQPPPPPPNLAPSLRNSKLFTSRLGRCSNTIKSGYRIIVSSGGMRAIVELLIPQLEFLDDEGAQLELWELSRLFLDTLIQETKCQVSGVLRHPNQIGGPDLILKMDPTDKKLGKVKAVFPDAGAAALLKYRWKDALFSFARLWKVFSDDKDRPNRYLLAKEYANRPDTEDIEVSSFIFNTLLDIL*