AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780036396.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036396.01.T01 MTR_7g012560 86.131 137 1 1 1 137 1 119 2.64e-80 232
MsG0780036396.01.T01 MTR_7g012560 97.143 105 3 0 1 105 1 105 2.46e-71 209
MsG0780036396.01.T01 MTR_6g013820 66.423 137 26 2 1 137 1 117 5.45e-56 171
MsG0780036396.01.T01 MTR_7g027300 46.269 134 54 2 4 137 3 118 2.59e-35 118
MsG0780036396.01.T01 MTR_7g027017 47.154 123 58 2 9 126 8 128 6.62e-32 115
MsG0780036396.01.T01 MTR_8g096380 52.174 92 42 1 5 96 4 93 2.11e-29 103
MsG0780036396.01.T01 MTR_7g108180 43.137 102 54 3 1 101 1 99 6.62e-25 92.4
MsG0780036396.01.T01 MTR_8g096390 45.556 90 45 2 5 92 4 91 5.45e-22 84.7
MsG0780036396.01.T02 MTR_7g012560 86.131 137 1 1 1 137 1 119 2.64e-80 232
MsG0780036396.01.T02 MTR_7g012560 97.143 105 3 0 1 105 1 105 2.46e-71 209
MsG0780036396.01.T02 MTR_6g013820 66.423 137 26 2 1 137 1 117 5.45e-56 171
MsG0780036396.01.T02 MTR_7g027300 46.269 134 54 2 4 137 3 118 2.59e-35 118
MsG0780036396.01.T02 MTR_7g027017 47.154 123 58 2 9 126 8 128 6.62e-32 115
MsG0780036396.01.T02 MTR_8g096380 52.174 92 42 1 5 96 4 93 2.11e-29 103
MsG0780036396.01.T02 MTR_7g108180 43.137 102 54 3 1 101 1 99 6.62e-25 92.4
MsG0780036396.01.T02 MTR_8g096390 45.556 90 45 2 5 92 4 91 5.45e-22 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780036396.01.T01 AT5G15460 64.646 99 33 1 1 99 1 97 3.84e-42 136
MsG0780036396.01.T01 AT5G15460 64.646 99 33 1 1 99 1 97 3.84e-42 136
MsG0780036396.01.T01 AT5G15460 64.646 99 33 1 1 99 1 97 3.84e-42 136
MsG0780036396.01.T01 AT3G01050 46.715 137 53 2 1 137 1 117 3.57e-40 130
MsG0780036396.01.T01 AT3G01050 46.715 137 53 2 1 137 1 117 3.57e-40 130
MsG0780036396.01.T01 AT3G01050 46.715 137 53 2 1 137 1 117 3.57e-40 130
MsG0780036396.01.T01 AT3G01050 46.715 137 53 2 1 137 1 117 3.57e-40 130
MsG0780036396.01.T01 AT3G01050 46.715 137 53 2 1 137 1 117 3.57e-40 130
MsG0780036396.01.T01 AT1G22050 43.478 138 58 3 1 137 1 119 2.97e-38 126
MsG0780036396.01.T01 AT1G77870 54.545 99 45 0 3 101 2 100 2.01e-36 121
MsG0780036396.01.T01 AT4G24990 55.435 92 39 1 5 96 4 93 2.42e-31 108
MsG0780036396.01.T01 AT4G24990 55.435 92 39 1 5 96 4 93 2.42e-31 108
MsG0780036396.01.T01 AT3G26980 52.174 92 42 1 4 95 3 92 1.33e-29 104
MsG0780036396.01.T01 AT5G15460 57.143 63 25 1 37 99 11 71 9.81e-18 73.2
MsG0780036396.01.T02 AT5G15460 64.646 99 33 1 1 99 1 97 3.84e-42 136
MsG0780036396.01.T02 AT5G15460 64.646 99 33 1 1 99 1 97 3.84e-42 136
MsG0780036396.01.T02 AT5G15460 64.646 99 33 1 1 99 1 97 3.84e-42 136
MsG0780036396.01.T02 AT3G01050 46.715 137 53 2 1 137 1 117 3.57e-40 130
MsG0780036396.01.T02 AT3G01050 46.715 137 53 2 1 137 1 117 3.57e-40 130
MsG0780036396.01.T02 AT3G01050 46.715 137 53 2 1 137 1 117 3.57e-40 130
MsG0780036396.01.T02 AT3G01050 46.715 137 53 2 1 137 1 117 3.57e-40 130
MsG0780036396.01.T02 AT3G01050 46.715 137 53 2 1 137 1 117 3.57e-40 130
MsG0780036396.01.T02 AT1G22050 43.478 138 58 3 1 137 1 119 2.97e-38 126
MsG0780036396.01.T02 AT1G77870 54.545 99 45 0 3 101 2 100 2.01e-36 121
MsG0780036396.01.T02 AT4G24990 55.435 92 39 1 5 96 4 93 2.42e-31 108
MsG0780036396.01.T02 AT4G24990 55.435 92 39 1 5 96 4 93 2.42e-31 108
MsG0780036396.01.T02 AT3G26980 52.174 92 42 1 4 95 3 92 1.33e-29 104
MsG0780036396.01.T02 AT5G15460 57.143 63 25 1 37 99 11 71 9.81e-18 73.2

Find 20 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTAAAATCACGAGAATT+TGG 0.233810 7:+7552090 None:intergenic
ATTTAAGTTTACAAGTTTCT+TGG 0.259080 7:-7551484 MsG0780036396.01.T01:five_prime_UTR
TTCTTCTTCATCTTCAATCT+AGG 0.307764 7:-7552123 MsG0780036396.01.T01:five_prime_UTR
CTCAAACTGCTCTTGGTTCC+CGG 0.352665 7:+7551447 None:intergenic
AGTGGCGGCAGGAAAACTTT+TGG 0.362153 7:+7551387 None:intergenic
TTGACGGATGGTTCTGATAT+CGG 0.410506 7:-7551412 MsG0780036396.01.T01:CDS
ACTTGATCTCAAACTGCTCT+TGG 0.425909 7:+7551440 None:intergenic
CTTGGATCTCCGAGCATGAC+CGG 0.442129 7:-7551466 MsG0780036396.01.T01:exon
TGAGATCAAGTTTAGGTTGA+CGG 0.445292 7:-7551428 MsG0780036396.01.T01:CDS
AGCAGTTTGAGATCAAGTTT+AGG 0.445361 7:-7551435 MsG0780036396.01.T01:CDS
TCTTGGTTCCCGGTCATGCT+CGG 0.475672 7:+7551457 None:intergenic
AAGAAAGTATTCTTGCTCAA+TGG 0.479119 7:-7551348 MsG0780036396.01.T01:CDS
ATTCTTGCTCAATGGCCAAA+AGG 0.495557 7:-7551340 MsG0780036396.01.T01:intron
TTTCAATGTTGCAATACTAG+TGG 0.550833 7:+7551369 None:intergenic
TTGGATCTCCGAGCATGACC+GGG 0.551174 7:-7551465 MsG0780036396.01.T01:exon
ATCAAGTTTAGGTTGACGGA+TGG 0.578278 7:-7551424 MsG0780036396.01.T01:CDS
CAATGTTGCAATACTAGTGG+CGG 0.583009 7:+7551372 None:intergenic
TATCATGCAGAATCCAACAT+AGG 0.583233 7:+7551706 None:intergenic
GTTGCAATACTAGTGGCGGC+AGG 0.593429 7:+7551376 None:intergenic
ATAGATGTCACTGATCTGAG+TGG 0.707851 7:+7552063 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAATAATAATTAGAACT+AGG + Chr7:7551341-7551360 None:intergenic 10.0%
!! AATAATGAATAAAAAAAACA+AGG + Chr7:7551542-7551561 None:intergenic 10.0%
!! ATAATGAATAAAAAAAACAA+GGG + Chr7:7551541-7551560 None:intergenic 10.0%
!!! TTTTTTTTTTTTCCAATTTT+TGG - Chr7:7549505-7549524 MsG0780036396.01.T01:intron 10.0%
!! AAAAAAAAAAGAACAAAAAG+TGG + Chr7:7549493-7549512 None:intergenic 15.0%
!! AAAAACAAATCAAAACTTTA+AGG - Chr7:7549462-7549481 MsG0780036396.01.T01:intron 15.0%
!! ATTCAAAATATCACATTAAA+TGG + Chr7:7550680-7550699 None:intergenic 15.0%
!! TCATATATCAATAACATAAA+AGG + Chr7:7551077-7551096 None:intergenic 15.0%
!!! AAAAATCTAAAATTTTCAAC+TGG + Chr7:7549551-7549570 None:intergenic 15.0%
!!! AAAATCTAAAATTTTCAACT+GGG + Chr7:7549550-7549569 None:intergenic 15.0%
!!! ATCTTTTTTTTTTTTGGTTT+TGG + Chr7:7549280-7549299 None:intergenic 15.0%
!!! GATAAATTATTCTTTTTCAA+AGG - Chr7:7551386-7551405 MsG0780036396.01.T01:CDS 15.0%
!! AAAAAAATCAAGCCAAAAAT+TGG + Chr7:7549520-7549539 None:intergenic 20.0%
!! TAATAATTAGAACTAGGATT+TGG + Chr7:7551335-7551354 None:intergenic 20.0%
!! TACAAGATAGTTAATGAAAA+TGG - Chr7:7551777-7551796 MsG0780036396.01.T01:intron 20.0%
!! TCTTAAAAAAAATTATCGGT+AGG + Chr7:7550394-7550413 None:intergenic 20.0%
!! TGATTGACATATTAATTATG+AGG - Chr7:7551476-7551495 MsG0780036396.01.T01:five_prime_UTR 20.0%
!! TGTTTAAAGAAGTAATATAC+TGG + Chr7:7551953-7551972 None:intergenic 20.0%
!! TTATACAAATAAGCTGAAAA+AGG + Chr7:7551753-7551772 None:intergenic 20.0%
!!! AAACAGATCTAATTTTCAAA+AGG + Chr7:7549591-7549610 None:intergenic 20.0%
!!! AACAGATCTAATTTTCAAAA+GGG + Chr7:7549590-7549609 None:intergenic 20.0%
!!! AATCATAGAATTTTTTCAAG+AGG + Chr7:7549737-7549756 None:intergenic 20.0%
!!! ACCGATAATTTTTTTTAAGA+GGG - Chr7:7550394-7550413 MsG0780036396.01.T01:intron 20.0%
!!! ATTTAAGTTTACAAGTTTCT+TGG - Chr7:7549996-7550015 MsG0780036396.01.T01:intron 20.0%
!!! TACCGATAATTTTTTTTAAG+AGG - Chr7:7550393-7550412 MsG0780036396.01.T01:intron 20.0%
!!! TTGAAAATTAGATCTGTTTT+AGG - Chr7:7549592-7549611 MsG0780036396.01.T01:intron 20.0%
! AAGGTAATGAACATATCATA+AGG + Chr7:7551734-7551753 None:intergenic 25.0%
! AATAGATATAAGTACCATCA+GGG - Chr7:7550300-7550319 MsG0780036396.01.T01:CDS 25.0%
! AGAAACAAACTACTAAATGA+CGG + Chr7:7550841-7550860 None:intergenic 25.0%
! ATTAAGCTAAAAAACCGAAA+AGG + Chr7:7550200-7550219 None:intergenic 25.0%
! CAAATCTGACATAGATAATT+TGG + Chr7:7550225-7550244 None:intergenic 25.0%
! CCCCTCTTAAAAAAAATTAT+CGG + Chr7:7550398-7550417 None:intergenic 25.0%
! CTTCATAGAAAGAAAAGTTT+AGG - Chr7:7550732-7550751 MsG0780036396.01.T01:intron 25.0%
! CTTTAAACATGTTTATACTC+TGG - Chr7:7551964-7551983 MsG0780036396.01.T01:intron 25.0%
! TAATAGATATAAGTACCATC+AGG - Chr7:7550299-7550318 MsG0780036396.01.T01:CDS 25.0%
! TTAAGCTAAAAAACCGAAAA+GGG + Chr7:7550199-7550218 None:intergenic 25.0%
! TTAATATGTCAATCAAGAAC+AGG + Chr7:7551471-7551490 None:intergenic 25.0%
! TTGTTAAAATCACGAGAATT+TGG + Chr7:7549393-7549412 None:intergenic 25.0%
!! ATCAGTTAAGAAAGTATGTA+AGG - Chr7:7550760-7550779 MsG0780036396.01.T01:intron 25.0%
!! ATTTATCTGTTTTCCTATGT+TGG - Chr7:7549761-7549780 MsG0780036396.01.T01:intron 25.0%
!! TTCAAATCTTTTATAGTCCT+TGG + Chr7:7551154-7551173 None:intergenic 25.0%
!!! CCGATAATTTTTTTTAAGAG+GGG - Chr7:7550395-7550414 MsG0780036396.01.T01:intron 25.0%
!!! GTTCGGTTTTTAAAACATTA+TGG - Chr7:7551021-7551040 MsG0780036396.01.T01:intron 25.0%
!!! TAATTTTTTTTAAGAGGGGT+AGG - Chr7:7550399-7550418 MsG0780036396.01.T01:intron 25.0%
!!! TGTTTTCCACATTTAGTTTA+AGG + Chr7:7550806-7550825 None:intergenic 25.0%
!!! TTATTTTAGCAATTCGACTA+CGG - Chr7:7550933-7550952 MsG0780036396.01.T01:intron 25.0%
!!! TTTGTTGTGTTTTGAAGATA+AGG - Chr7:7551120-7551139 MsG0780036396.01.T01:intron 25.0%
!!! TTTTTGTTGTTTTTGTGAGT+TGG + Chr7:7549445-7549464 None:intergenic 25.0%
AAATTTACTGCTGTTCTGTT+TGG - Chr7:7552080-7552099 MsG0780036396.01.T01:five_prime_UTR 30.0%
AACTAAATGTGGAAAACACT+AGG - Chr7:7550808-7550827 MsG0780036396.01.T01:intron 30.0%
AATCAGTGCAGGAAAAATAT+TGG - Chr7:7551177-7551196 MsG0780036396.01.T01:intron 30.0%
ACAATGTTTCTTACAACAAC+GGG + Chr7:7550269-7550288 None:intergenic 30.0%
AGAAGAAAAAGAGAGAAAGT+TGG + Chr7:7549335-7549354 None:intergenic 30.0%
ATAGAGCCTTAAACTAAATG+TGG - Chr7:7550797-7550816 MsG0780036396.01.T01:intron 30.0%
CACAATGTTTCTTACAACAA+CGG + Chr7:7550270-7550289 None:intergenic 30.0%
CTAAAATAACTGAACAGTGA+AGG + Chr7:7550922-7550941 None:intergenic 30.0%
GTAAATTTAAGAAGCAAGCA+TGG + Chr7:7552068-7552087 None:intergenic 30.0%
TGTAAGAAACATTGTGTTCA+TGG - Chr7:7550274-7550293 MsG0780036396.01.T01:CDS 30.0%
TTCTTCTTCATCTTCAATCT+AGG - Chr7:7549357-7549376 MsG0780036396.01.T01:CDS 30.0%
TTTAAGCAATCACTACATCT+AGG + Chr7:7550580-7550599 None:intergenic 30.0%
TTTCAATGTTGCAATACTAG+TGG + Chr7:7550114-7550133 None:intergenic 30.0%
! ACACAAAACAACTAACCTTT+TGG + Chr7:7550158-7550177 None:intergenic 30.0%
! ACTATGAACAAGTTTTCTTG+TGG + Chr7:7549944-7549963 None:intergenic 30.0%
! ATTTTACTACAAGTCCTGTT+TGG + Chr7:7551888-7551907 None:intergenic 30.0%
! TTAGTTTAAGGCTCTATTTG+AGG + Chr7:7550794-7550813 None:intergenic 30.0%
! TTCTTTGTTCTTTCCCTTTT+CGG - Chr7:7550183-7550202 MsG0780036396.01.T01:intron 30.0%
!! AAGAAAGTATTCTTGCTCAA+TGG - Chr7:7550132-7550151 MsG0780036396.01.T01:intron 30.0%
!!! GTTTTTTTGTATGCACTTGT+TGG - Chr7:7549665-7549684 MsG0780036396.01.T01:intron 30.0%
ATATACTGGATATGTCAAGC+TGG + Chr7:7551939-7551958 None:intergenic 35.0%
TACTGTTACAACAATGCATG+TGG - Chr7:7551258-7551277 MsG0780036396.01.T01:intron 35.0%
TATCATGCAGAATCCAACAT+AGG + Chr7:7549777-7549796 None:intergenic 35.0%
TCAAACGTGTCAATCAAGAA+AGG + Chr7:7551656-7551675 None:intergenic 35.0%
TCTTTCTATGAAGCATATGC+AGG + Chr7:7550725-7550744 None:intergenic 35.0%
TGATGAGATCAGAGAAGAAA+AGG - Chr7:7550639-7550658 MsG0780036396.01.T01:intron 35.0%
TTCCTTGACAGCTAAGTTAA+AGG + Chr7:7551511-7551530 None:intergenic 35.0%
TTGGAGAACAACAAAACAGT+CGG - Chr7:7551196-7551215 MsG0780036396.01.T01:intron 35.0%
! AGCAGTTTGAGATCAAGTTT+AGG - Chr7:7550045-7550064 MsG0780036396.01.T01:intron 35.0%
! ATCCTTTAACTTAGCTGTCA+AGG - Chr7:7551506-7551525 MsG0780036396.01.T01:five_prime_UTR 35.0%
! CTACTGACATAAGCTTTTGA+GGG - Chr7:7551682-7551701 MsG0780036396.01.T01:intron 35.0%
! CTTAAGTTGCTTATCCAAAC+AGG - Chr7:7551871-7551890 MsG0780036396.01.T01:intron 35.0%
! GATTTGAAGTTAATCAGTGC+AGG - Chr7:7551166-7551185 MsG0780036396.01.T01:intron 35.0%
! GCTGCTTTCTTATCTGTATA+AGG + Chr7:7552170-7552189 None:intergenic 35.0%
! TCTACTGACATAAGCTTTTG+AGG - Chr7:7551681-7551700 MsG0780036396.01.T01:intron 35.0%
!! TGAGATCAAGTTTAGGTTGA+CGG - Chr7:7550052-7550071 MsG0780036396.01.T01:intron 35.0%
!!! TTTTTTTTAAGAGGGGTAGG+TGG - Chr7:7550402-7550421 MsG0780036396.01.T01:intron 35.0%
AAGATAAGGAGAATGTGCCA+AGG - Chr7:7551134-7551153 MsG0780036396.01.T01:intron 40.0%
ACTTGATCTCAAACTGCTCT+TGG + Chr7:7550043-7550062 None:intergenic 40.0%
AGCAATCACTACATCTAGGT+TGG + Chr7:7550576-7550595 None:intergenic 40.0%
ATAGATGTCACTGATCTGAG+TGG + Chr7:7549420-7549439 None:intergenic 40.0%
ATGAGACCTTTGTCTGTAGT+AGG + Chr7:7551295-7551314 None:intergenic 40.0%
ATTCTTGCTCAATGGCCAAA+AGG - Chr7:7550140-7550159 MsG0780036396.01.T01:intron 40.0%
CAATGTTGCAATACTAGTGG+CGG + Chr7:7550111-7550130 None:intergenic 40.0%
CATTGTTGTAACAGTACCAG+GGG + Chr7:7551254-7551273 None:intergenic 40.0%
GAACTAGGATTTGGCATTGT+TGG + Chr7:7551326-7551345 None:intergenic 40.0%
GCATTGTTGTAACAGTACCA+GGG + Chr7:7551255-7551274 None:intergenic 40.0%
TCAGCAAGACTTCTGGATTA+TGG + Chr7:7550995-7551014 None:intergenic 40.0%
TCATCCGACACATATTGACA+TGG - Chr7:7552133-7552152 MsG0780036396.01.T01:five_prime_UTR 40.0%
TCCACCATGTCAATATGTGT+CGG + Chr7:7552140-7552159 None:intergenic 40.0%
TGCATTGTTGTAACAGTACC+AGG + Chr7:7551256-7551275 None:intergenic 40.0%
! ATTGGATGGATTCGAAAACC+GGG - Chr7:7550429-7550448 MsG0780036396.01.T01:intron 40.0%
! GATTGGATGGATTCGAAAAC+CGG - Chr7:7550428-7550447 MsG0780036396.01.T01:intron 40.0%
!! AATCGAACTTGTTGTTGCAG+GGG + Chr7:7550371-7550390 None:intergenic 40.0%
!! ACGGTTTTGTCCCGATATAA+GGG - Chr7:7550952-7550971 MsG0780036396.01.T01:intron 40.0%
!! AGTCTTGCTGATTCGTTGTT+CGG - Chr7:7551004-7551023 MsG0780036396.01.T01:intron 40.0%
!! ATCAAGTTTAGGTTGACGGA+TGG - Chr7:7550056-7550075 MsG0780036396.01.T01:intron 40.0%
!! CATGATCATCTGAGGCTTTT+GGG - Chr7:7550464-7550483 MsG0780036396.01.T01:intron 40.0%
!! GAATCGAACTTGTTGTTGCA+GGG + Chr7:7550372-7550391 None:intergenic 40.0%
!! TACCAGGGGTATCACATAAA+GGG + Chr7:7551240-7551259 None:intergenic 40.0%
!! TACGGTTTTGTCCCGATATA+AGG - Chr7:7550951-7550970 MsG0780036396.01.T01:intron 40.0%
!! TTGACGGATGGTTCTGATAT+CGG - Chr7:7550068-7550087 MsG0780036396.01.T01:intron 40.0%
AGACCTTTGTCTGTAGTAGG+TGG + Chr7:7551292-7551311 None:intergenic 45.0%
ATCAGGTGCATGATCATCTG+AGG - Chr7:7550456-7550475 MsG0780036396.01.T01:intron 45.0%
ATCATGCACCTGATATCACC+CGG + Chr7:7550450-7550469 None:intergenic 45.0%
CAACCACCTACTACAGACAA+AGG - Chr7:7551286-7551305 MsG0780036396.01.T01:intron 45.0%
CAACGAATCAGCAAGACTTC+TGG + Chr7:7551002-7551021 None:intergenic 45.0%
GGGTATCACATAAAGGGCTT+TGG + Chr7:7551234-7551253 None:intergenic 45.0%
TCCGACACATATTGACATGG+TGG - Chr7:7552136-7552155 MsG0780036396.01.T01:five_prime_UTR 45.0%
TGCCTTAAGCCCCCTTATAT+CGG + Chr7:7550966-7550985 None:intergenic 45.0%
TTACAGTCCTAGCTTCACAG+AGG + Chr7:7551601-7551620 None:intergenic 45.0%
TTCCTTACTGTCCTGCTTGA+CGG - Chr7:7550871-7550890 MsG0780036396.01.T01:intron 45.0%
TTCGAAAACCGGGTGATATC+AGG - Chr7:7550439-7550458 MsG0780036396.01.T01:intron 45.0%
! AGGCTGATTCAAGGTTCAAC+CGG + Chr7:7550902-7550921 None:intergenic 45.0%
! GAACAGTGAAGGCTGATTCA+AGG + Chr7:7550911-7550930 None:intergenic 45.0%
!! CGGTTTTGTCCCGATATAAG+GGG - Chr7:7550953-7550972 MsG0780036396.01.T01:intron 45.0%
!! GCATGATCATCTGAGGCTTT+TGG - Chr7:7550463-7550482 MsG0780036396.01.T01:intron 45.0%
!! GGAATCGAACTTGTTGTTGC+AGG + Chr7:7550373-7550392 None:intergenic 45.0%
!! GGTTTTGTCCCGATATAAGG+GGG - Chr7:7550954-7550973 MsG0780036396.01.T01:intron 45.0%
!! GTACCAGGGGTATCACATAA+AGG + Chr7:7551241-7551260 None:intergenic 45.0%
!!! GGCTTTTGGGTTTGATGTAC+TGG - Chr7:7550477-7550496 MsG0780036396.01.T01:intron 45.0%
!!! ATTATTATCTTTTTTTTTTT+TGG + Chr7:7549286-7549305 None:intergenic 5.0%
AACCGTCAAGCAGGACAGTA+AGG + Chr7:7550876-7550895 None:intergenic 50.0%
AGAGGGGTAGGTGGTTTGAT+TGG - Chr7:7550411-7550430 MsG0780036396.01.T01:intron 50.0%
AGCCCTTTATGTGATACCCC+TGG - Chr7:7551235-7551254 MsG0780036396.01.T01:intron 50.0%
CTCAAACTGCTCTTGGTTCC+CGG + Chr7:7550036-7550055 None:intergenic 50.0%
GATGCAGCACAGCACAAATG+TGG - Chr7:7552194-7552213 MsG0780036396.01.T01:five_prime_UTR 50.0%
GCCTTAAGCCCCCTTATATC+GGG + Chr7:7550965-7550984 None:intergenic 50.0%
GGGTAGGTGGTTTGATTGGA+TGG - Chr7:7550415-7550434 MsG0780036396.01.T01:intron 50.0%
GTAGTCTCCTCTGTGAAGCT+AGG - Chr7:7551591-7551610 MsG0780036396.01.T01:five_prime_UTR 50.0%
TCCCGATATAAGGGGGCTTA+AGG - Chr7:7550961-7550980 MsG0780036396.01.T01:intron 50.0%
! AGTGGCGGCAGGAAAACTTT+TGG + Chr7:7550096-7550115 None:intergenic 50.0%
! CACATAAAGGGCTTTGGCTC+TGG + Chr7:7551228-7551247 None:intergenic 50.0%
! GTGGCGGCAGGAAAACTTTT+GGG + Chr7:7550095-7550114 None:intergenic 50.0%
! TGGCGGCAGGAAAACTTTTG+GGG + Chr7:7550094-7550113 None:intergenic 50.0%
AACCGGTTGAACCGTCAAGC+AGG + Chr7:7550885-7550904 None:intergenic 55.0%
CTTGGATCTCCGAGCATGAC+CGG - Chr7:7550014-7550033 MsG0780036396.01.T01:intron 55.0%
GTCCTGCTTGACGGTTCAAC+CGG - Chr7:7550880-7550899 MsG0780036396.01.T01:intron 55.0%
GTTGCAATACTAGTGGCGGC+AGG + Chr7:7550107-7550126 None:intergenic 55.0%
TCTTGGTTCCCGGTCATGCT+CGG + Chr7:7550026-7550045 None:intergenic 55.0%
TTGGATCTCCGAGCATGACC+GGG - Chr7:7550015-7550034 MsG0780036396.01.T01:intron 55.0%
CAGGGTCTAGCGCAAGTGGT+TGG - Chr7:7550318-7550337 MsG0780036396.01.T01:CDS 60.0%
CCACTTGCGCTAGACCCTGA+TGG + Chr7:7550317-7550336 None:intergenic 60.0%
CCATCAGGGTCTAGCGCAAG+TGG - Chr7:7550314-7550333 MsG0780036396.01.T01:CDS 60.0%
! AGCGCAAGTGGTTGGTGTGC+AGG - Chr7:7550326-7550345 MsG0780036396.01.T01:CDS 60.0%
! CGCAAGTGGTTGGTGTGCAG+GGG - Chr7:7550328-7550347 MsG0780036396.01.T01:CDS 60.0%
! GCGCAAGTGGTTGGTGTGCA+GGG - Chr7:7550327-7550346 MsG0780036396.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 7549270 7552232 7549270 ID=MsG0780036396.01;Name=MsG0780036396.01
Chr7 mRNA 7549270 7552232 7549270 ID=MsG0780036396.01.T01;Parent=MsG0780036396.01;Name=MsG0780036396.01.T01;_AED=0.48;_eAED=0.48;_QI=366|0.66|0.75|1|0.33|0|4|0|137
Chr7 exon 7551341 7551625 7551341 ID=MsG0780036396.01.T01:exon:3991;Parent=MsG0780036396.01.T01
Chr7 exon 7552019 7552232 7552019 ID=MsG0780036396.01.T01:exon:3990;Parent=MsG0780036396.01.T01
Chr7 five_prime_UTR 7552019 7552232 7552019 ID=MsG0780036396.01.T01:five_prime_utr;Parent=MsG0780036396.01.T01
Chr7 five_prime_UTR 7551474 7551625 7551474 ID=MsG0780036396.01.T01:five_prime_utr;Parent=MsG0780036396.01.T01
Chr7 CDS 7551341 7551473 7551341 ID=MsG0780036396.01.T01:cds;Parent=MsG0780036396.01.T01
Chr7 CDS 7550195 7550365 7550195 ID=MsG0780036396.01.T01:cds;Parent=MsG0780036396.01.T01
Chr7 CDS 7549270 7549379 7549270 ID=MsG0780036396.01.T01:cds;Parent=MsG0780036396.01.T01
Chr7 mRNA 7549270 7552227 7549270 ID=MsG0780036396.01.T02;Parent=MsG0780036396.01;Name=MsG0780036396.01.T02;_AED=0.47;_eAED=0.49;_QI=754|0.5|0.66|1|0.5|0.33|3|0|137
Chr7 exon 7551341 7552227 7551341 ID=MsG0780036396.01.T02:exon:3994;Parent=MsG0780036396.01.T02
Chr7 five_prime_UTR 7551474 7552227 7551474 ID=MsG0780036396.01.T02:five_prime_utr;Parent=MsG0780036396.01.T02
Chr7 CDS 7551341 7551473 7551341 ID=MsG0780036396.01.T02:cds;Parent=MsG0780036396.01.T02
Chr7 CDS 7550195 7550365 7550195 ID=MsG0780036396.01.T02:cds;Parent=MsG0780036396.01.T02
Chr7 CDS 7549270 7549379 7549270 ID=MsG0780036396.01.T02:cds;Parent=MsG0780036396.01.T02
Gene Sequence

>MsG0780036396.01.T01

ATGACCGGGAACCAAGAGCAGTTTGAGATCAAGTTTAGGTTGACGGATGGTTCTGATATCGGCCCCAAAAGTTTTCCTGCCGCCACTAGTATTGCAACATTGAAAGAAAGTATTCTTGCTCAATGGCCAAAAGATAAGGAGAATGTGCCAAGGACTATAAAAGATTTGAAGTTAATCAGTGCAGGAAAAATATTGGAGAACAACAAAACAGTCGGTGAATGCCAGAGCCAAAGCCCTTTATGTGATACCCCTGGTACTGTTACAACAATGCATGTGGTTGTGCAACCACCTACTACAGACAAAGTTTTAGCGCTTCATCCGACACATATTGACATGGTGGACTTTTCTCCTTATACAGATAAGAAAGCAGCGAACGATGCAGCACAGCACAAATGTGGTTGTGTTATTTTATAG

>MsG0780036396.01.T02

ATGACCGGGAACCAAGAGCAGTTTGAGATCAAGTTTAGGTTGACGGATGGTTCTGATATCGGCCCCAAAAGTTTTCCTGCCGCCACTAGTATTGCAACATTGAAAGAAAGTATTCTTGCTCAATGGCCAAAAGATAAGGAGAATGTGCCAAGGACTATAAAAGATTTGAAGTTAATCAGTGCAGGAAAAATATTGGAGAACAACAAAACAGTCGGTGAATGCCAGAGCCAAAGCCCTTTATGTGATACCCCTGGTACTGTTACAACAATGCATGTGGTTGTGCAACCACCTACTACAGACAAAGTTTTAGCGCTTCATCCGACACATATTGACATGGTGGACTTTTCTCCTTATACAGATAAGAAAGCAGCGAACGATGCAGCACAGCACAAATGTGGTTGTGTTATTTTATAG
Protein sequence

>MsG0780036396.01.T01

MTGNQEQFEIKFRLTDGSDIGPKSFPAATSIATLKESILAQWPKDKENVPRTIKDLKLISAGKILENNKTVGECQSQSPLCDTPGTVTTMHVVVQPPTTDKVLALHPTHIDMVDFSPYTDKKAANDAAQHKCGCVIL*

>MsG0780036396.01.T02

MTGNQEQFEIKFRLTDGSDIGPKSFPAATSIATLKESILAQWPKDKENVPRTIKDLKLISAGKILENNKTVGECQSQSPLCDTPGTVTTMHVVVQPPTTDKVLALHPTHIDMVDFSPYTDKKAANDAAQHKCGCVIL*