Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021361.01.T01 | AES89310.1 | 84.375 | 320 | 16 | 2 | 1 | 286 | 1 | 320 | 0 | 536 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021361.01.T01 | A0A2P1GIY9 | 50.789 | 317 | 121 | 3 | 5 | 286 | 6 | 322 | 5.97E-110 | 324 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021361.01.T01 | G7JL35 | 84.375 | 320 | 16 | 2 | 1 | 286 | 1 | 320 | 0.0 | 536 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080049045.01 | MsG0480021361.01 | 0.810239 | 1.272167e-50 | 7.628474e-48 |
| MsG0180000551.01 | MsG0480021361.01 | 0.810085 | 1.373287e-50 | 8.201550e-48 |
| MsG0180003248.01 | MsG0480021361.01 | 0.809475 | 1.857984e-50 | 1.091925e-47 |
| MsG0180003375.01 | MsG0480021361.01 | 0.804888 | 1.739916e-49 | 9.076917e-47 |
| MsG0180003405.01 | MsG0480021361.01 | -0.812511 | 4.086389e-51 | 2.603279e-48 |
| MsG0180004121.01 | MsG0480021361.01 | 0.823203 | 1.571469e-53 | 1.344135e-50 |
| MsG0180004948.01 | MsG0480021361.01 | 0.806304 | 8.779539e-50 | 4.749008e-47 |
| MsG0180005572.01 | MsG0480021361.01 | 0.803508 | 3.371041e-49 | 1.697149e-46 |
| MsG0280011267.01 | MsG0480021361.01 | 0.802035 | 6.791468e-49 | 3.292775e-46 |
| MsG0380011968.01 | MsG0480021361.01 | 0.821451 | 4.010292e-53 | 3.263678e-50 |
| MsG0380012895.01 | MsG0480021361.01 | 0.813779 | 2.153529e-51 | 1.419373e-48 |
| MsG0380012900.01 | MsG0480021361.01 | 0.806070 | 9.835653e-50 | 5.288618e-47 |
| MsG0380013843.01 | MsG0480021361.01 | 0.811215 | 7.824834e-51 | 4.815264e-48 |
| MsG0380014639.01 | MsG0480021361.01 | -0.810697 | 1.013285e-50 | 6.150515e-48 |
| MsG0480018563.01 | MsG0480021361.01 | 0.814903 | 1.215613e-51 | 8.259173e-49 |
| MsG0480019146.01 | MsG0480021361.01 | 0.818790 | 1.630935e-52 | 1.232738e-49 |
| MsG0480019842.01 | MsG0480021361.01 | 0.818083 | 2.358646e-52 | 1.748232e-49 |
| MsG0480020904.01 | MsG0480021361.01 | 0.808645 | 2.797026e-50 | 1.607874e-47 |
| MsG0480021129.01 | MsG0480021361.01 | 0.815232 | 1.027388e-51 | 7.043096e-49 |
| MsG0480021360.01 | MsG0480021361.01 | 0.852138 | 5.617849e-61 | 1.162750e-57 |
| MsG0480021361.01 | MsG0480022428.01 | 0.808949 | 2.408865e-50 | 1.395888e-47 |
| MsG0480021361.01 | MsG0480022840.01 | 0.815266 | 1.009643e-51 | 6.928132e-49 |
| MsG0480021361.01 | MsG0580024087.01 | 0.809488 | 1.845563e-50 | 1.085024e-47 |
| MsG0480021361.01 | MsG0580025431.01 | 0.807315 | 5.366397e-50 | 2.979577e-47 |
| MsG0480021361.01 | MsG0580025432.01 | 0.828333 | 9.531464e-55 | 9.444504e-52 |
| MsG0480021361.01 | MsG0580025590.01 | 0.816242 | 6.117264e-52 | 4.311506e-49 |
| MsG0480021361.01 | MsG0580029240.01 | 0.806971 | 6.346397e-50 | 3.492205e-47 |
| MsG0480021361.01 | MsG0580029359.01 | 0.803651 | 3.148596e-49 | 1.590891e-46 |
| MsG0480021361.01 | MsG0580029438.01 | 0.811814 | 5.799724e-51 | 3.625887e-48 |
| MsG0480021361.01 | MsG0580029676.01 | 0.807593 | 4.686255e-50 | 2.620555e-47 |
| MsG0480021361.01 | MsG0680030296.01 | 0.810132 | 1.342019e-50 | 8.024645e-48 |
| MsG0480021361.01 | MsG0680030613.01 | 0.824188 | 9.240064e-54 | 8.126400e-51 |
| MsG0480021361.01 | MsG0680031474.01 | 0.804050 | 2.601980e-49 | 1.328303e-46 |
| MsG0480021361.01 | MsG0680031683.01 | 0.807528 | 4.837043e-50 | 2.700466e-47 |
| MsG0480021361.01 | MsG0680031684.01 | 0.836734 | 7.866034e-57 | 1.000166e-53 |
| MsG0480021361.01 | MsG0680034418.01 | 0.841357 | 4.989970e-58 | 7.313444e-55 |
| MsG0480021361.01 | MsG0680034728.01 | 0.840660 | 7.604490e-58 | 1.090649e-54 |
| MsG0480021361.01 | MsG0680035584.01 | -0.802869 | 4.570813e-49 | 2.263766e-46 |
| MsG0480021361.01 | MsG0780036839.01 | 0.832116 | 1.135565e-55 | 1.257121e-52 |
| MsG0480021361.01 | MsG0780039235.01 | 0.845428 | 4.086811e-59 | 6.808171e-56 |
| MsG0480021361.01 | MsG0780039237.01 | 0.806504 | 7.966471e-50 | 4.331247e-47 |
| MsG0480021361.01 | MsG0780039619.01 | 0.831688 | 1.448782e-55 | 1.583954e-52 |
| MsG0480021361.01 | MsG0780039979.01 | 0.831823 | 1.341343e-55 | 1.472518e-52 |
| MsG0480021361.01 | MsG0780040497.01 | 0.820184 | 7.841744e-53 | 6.161527e-50 |
| MsG0480021361.01 | MsG0780040498.01 | 0.824186 | 9.252004e-54 | 8.136363e-51 |
| MsG0480021361.01 | MsG0780040560.01 | 0.811927 | 5.478925e-51 | 3.435563e-48 |
| MsG0480021361.01 | MsG0780040598.01 | 0.820293 | 7.403222e-53 | 5.834308e-50 |
| MsG0480021361.01 | MsG0780040784.01 | 0.833833 | 4.248637e-56 | 4.951528e-53 |
| MsG0480021361.01 | MsG0780041180.01 | 0.832401 | 9.653922e-56 | 1.077874e-52 |
| MsG0480021361.01 | MsG0880042441.01 | 0.805315 | 1.416762e-49 | 7.471752e-47 |
| MsG0480021361.01 | MsG0880042591.01 | 0.804287 | 2.321929e-49 | 1.192568e-46 |
| MsG0480021361.01 | MsG0880042740.01 | 0.804936 | 1.700572e-49 | 8.882162e-47 |
| MsG0480021361.01 | MsG0880043212.01 | 0.860208 | 2.423960e-63 | 6.574274e-60 |
| MsG0480021361.01 | MsG0880043217.01 | 0.812017 | 5.238185e-51 | 3.292752e-48 |
| MsG0480021361.01 | MsG0880045854.01 | 0.809727 | 1.640421e-50 | 9.705908e-48 |
| MsG0480021361.01 | MsG0880046271.01 | 0.821879 | 3.192905e-53 | 2.630301e-50 |
| MsG0480021361.01 | MsG0880046932.01 | 0.824986 | 5.994924e-54 | 5.394731e-51 |
| MsG0480021361.01 | MsG0880047383.01 | 0.803488 | 3.403263e-49 | 1.712459e-46 |
| MsG0380015323.01 | MsG0480021361.01 | 0.809330 | 1.995581e-50 | 1.168319e-47 |
| MsG0380015660.01 | MsG0480021361.01 | 0.807730 | 4.382792e-50 | 2.459791e-47 |
| MsG0380015711.01 | MsG0480021361.01 | 0.800486 | 1.409042e-48 | 6.568896e-46 |
| MsG0380016299.01 | MsG0480021361.01 | 0.820550 | 6.463589e-53 | 5.130238e-50 |
| MsG0380016300.01 | MsG0480021361.01 | 0.831108 | 2.011993e-55 | 2.162020e-52 |
| MsG0380016301.01 | MsG0480021361.01 | 0.838415 | 2.914817e-57 | 3.901424e-54 |
| MsG0380016485.01 | MsG0480021361.01 | 0.812255 | 4.647713e-51 | 2.940685e-48 |
| MsG0380017565.01 | MsG0480021361.01 | 0.833116 | 6.413726e-56 | 7.316247e-53 |
| MsG0380017901.01 | MsG0480021361.01 | 0.812729 | 3.661338e-51 | 2.345910e-48 |
| MsG0380018004.01 | MsG0480021361.01 | 0.801995 | 6.919584e-49 | 3.351461e-46 |
| MsG0280006546.01 | MsG0480021361.01 | 0.820966 | 5.188333e-53 | 4.166294e-50 |
| MsG0280006559.01 | MsG0480021361.01 | 0.802514 | 5.410340e-49 | 2.655319e-46 |
| MsG0280007199.01 | MsG0480021361.01 | 0.817562 | 3.091529e-52 | 2.259066e-49 |
| MsG0280007937.01 | MsG0480021361.01 | 0.809031 | 2.313239e-50 | 1.343447e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0480021361.01 | MsG0480023996.01 | PPI |
| MsG0480021361.01 | MsG0080047875.01 | PPI |
| MsG0480021361.01 | MsG0480021356.01 | PPI |
| MsG0480021361.01 | MsG0780039304.01 | PPI |
| MsG0480021361.01 | MsG0480019714.01 | PPI |
| MsG0580026320.01 | MsG0480021361.01 | PPI |
| MsG0480021361.01 | MsG0880045356.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021361.01.T01 | MTR_4g072360 | 84.375 | 320 | 16 | 2 | 1 | 286 | 1 | 320 | 0.0 | 536 |
| MsG0480021361.01.T01 | MTR_4g072350 | 79.751 | 321 | 31 | 2 | 1 | 287 | 1 | 321 | 0.0 | 513 |
| MsG0480021361.01.T01 | MTR_4g072320 | 74.062 | 320 | 43 | 4 | 1 | 286 | 1 | 314 | 2.33e-167 | 466 |
| MsG0480021361.01.T01 | MTR_6g073110 | 55.346 | 318 | 108 | 2 | 1 | 284 | 1 | 318 | 1.80e-127 | 365 |
| MsG0480021361.01.T01 | MTR_0374s0050 | 44.892 | 323 | 133 | 4 | 1 | 286 | 1 | 315 | 1.09e-89 | 270 |
| MsG0480021361.01.T01 | MTR_3g083130 | 44.969 | 318 | 125 | 8 | 6 | 284 | 7 | 313 | 1.19e-81 | 249 |
| MsG0480021361.01.T01 | MTR_4g036845 | 40.190 | 316 | 152 | 7 | 5 | 286 | 2 | 314 | 1.86e-69 | 218 |
| MsG0480021361.01.T01 | MTR_8g070095 | 39.103 | 312 | 151 | 6 | 11 | 286 | 10 | 318 | 4.37e-68 | 214 |
| MsG0480021361.01.T01 | MTR_5g097900 | 41.433 | 321 | 141 | 9 | 1 | 284 | 1 | 311 | 1.02e-67 | 213 |
| MsG0480021361.01.T01 | MTR_5g097910 | 42.333 | 300 | 135 | 7 | 1 | 264 | 1 | 298 | 1.17e-67 | 213 |
| MsG0480021361.01.T01 | MTR_5g097940 | 42.333 | 300 | 135 | 7 | 1 | 264 | 1 | 298 | 1.17e-67 | 213 |
| MsG0480021361.01.T01 | MTR_8g070115 | 37.742 | 310 | 154 | 6 | 11 | 286 | 10 | 314 | 4.25e-61 | 196 |
| MsG0480021361.01.T01 | MTR_6g072650 | 60.667 | 150 | 28 | 2 | 147 | 287 | 10 | 137 | 1.55e-56 | 179 |
| MsG0480021361.01.T01 | MTR_4g021350 | 36.909 | 317 | 145 | 10 | 11 | 286 | 10 | 312 | 3.33e-56 | 184 |
| MsG0480021361.01.T01 | MTR_7g063580 | 38.264 | 311 | 150 | 8 | 11 | 286 | 50 | 353 | 2.43e-55 | 182 |
| MsG0480021361.01.T01 | MTR_4g021410 | 38.835 | 309 | 137 | 9 | 11 | 284 | 11 | 302 | 3.30e-53 | 176 |
| MsG0480021361.01.T01 | MTR_4g021450 | 37.695 | 321 | 148 | 9 | 1 | 286 | 1 | 304 | 9.66e-53 | 174 |
| MsG0480021361.01.T01 | MTR_4g021410 | 39.350 | 277 | 119 | 7 | 43 | 284 | 3 | 265 | 2.18e-48 | 162 |
| MsG0480021361.01.T01 | MTR_4g021350 | 35.862 | 290 | 132 | 9 | 11 | 260 | 10 | 285 | 1.22e-46 | 158 |
| MsG0480021361.01.T01 | MTR_7g070500 | 32.362 | 309 | 167 | 8 | 11 | 284 | 17 | 318 | 7.04e-45 | 154 |
| MsG0480021361.01.T01 | MTR_4g021450 | 41.633 | 245 | 113 | 6 | 52 | 286 | 4 | 228 | 3.57e-43 | 147 |
| MsG0480021361.01.T01 | MTR_4g072060 | 34.130 | 293 | 149 | 6 | 9 | 260 | 3 | 292 | 4.93e-43 | 149 |
| MsG0480021361.01.T01 | MTR_6g072710 | 60.748 | 107 | 42 | 0 | 156 | 262 | 1 | 107 | 6.12e-43 | 143 |
| MsG0480021361.01.T01 | MTR_4g021410 | 43.069 | 202 | 92 | 5 | 93 | 284 | 38 | 226 | 7.90e-43 | 146 |
| MsG0480021361.01.T01 | MTR_4g021450 | 42.857 | 189 | 94 | 3 | 108 | 286 | 1 | 185 | 5.07e-42 | 143 |
| MsG0480021361.01.T01 | MTR_7g070500 | 31.317 | 281 | 154 | 5 | 11 | 259 | 17 | 290 | 3.15e-39 | 139 |
| MsG0480021361.01.T01 | MTR_6g072705 | 59.322 | 59 | 19 | 1 | 69 | 127 | 32 | 85 | 2.85e-18 | 78.2 |
| MsG0480021361.01.T01 | MTR_3g092140 | 24.555 | 281 | 155 | 7 | 35 | 260 | 72 | 350 | 1.05e-13 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480021361.01.T01 | AT1G59960 | 42.462 | 325 | 148 | 4 | 1 | 286 | 1 | 325 | 1.01e-89 | 270 |
| MsG0480021361.01.T01 | AT1G59950 | 41.967 | 305 | 142 | 4 | 17 | 286 | 15 | 319 | 4.89e-80 | 245 |
| MsG0480021361.01.T01 | AT2G37790 | 40.777 | 309 | 145 | 5 | 11 | 286 | 10 | 313 | 2.64e-70 | 220 |
| MsG0480021361.01.T01 | AT2G37770 | 40.645 | 310 | 145 | 6 | 11 | 286 | 10 | 314 | 5.45e-68 | 214 |
| MsG0480021361.01.T01 | AT3G53880 | 40.000 | 310 | 147 | 6 | 11 | 286 | 10 | 314 | 9.75e-65 | 206 |
| MsG0480021361.01.T01 | AT5G62420 | 38.907 | 311 | 152 | 7 | 11 | 286 | 8 | 315 | 3.02e-64 | 204 |
| MsG0480021361.01.T01 | AT2G37760 | 38.264 | 311 | 147 | 6 | 11 | 286 | 10 | 310 | 2.31e-63 | 202 |
| MsG0480021361.01.T01 | AT2G37760 | 38.264 | 311 | 147 | 6 | 11 | 286 | 10 | 310 | 2.31e-63 | 202 |
| MsG0480021361.01.T01 | AT2G37760 | 37.847 | 288 | 135 | 5 | 11 | 264 | 10 | 287 | 5.51e-57 | 185 |
| MsG0480021361.01.T01 | AT2G37760 | 37.847 | 288 | 135 | 5 | 11 | 264 | 10 | 287 | 5.51e-57 | 185 |
| MsG0480021361.01.T01 | AT2G37760 | 38.112 | 286 | 133 | 5 | 11 | 262 | 10 | 285 | 8.54e-57 | 184 |
| MsG0480021361.01.T01 | AT3G53880 | 37.801 | 291 | 143 | 5 | 3 | 260 | 2 | 287 | 8.58e-54 | 177 |
| MsG0480021361.01.T01 | AT5G01670 | 34.483 | 319 | 165 | 10 | 2 | 284 | 9 | 319 | 3.24e-53 | 176 |
| MsG0480021361.01.T01 | AT2G21250 | 32.993 | 294 | 153 | 6 | 8 | 260 | 2 | 292 | 3.46e-51 | 171 |
| MsG0480021361.01.T01 | AT2G37760 | 38.783 | 263 | 142 | 5 | 34 | 286 | 11 | 264 | 3.47e-51 | 169 |
| MsG0480021361.01.T01 | AT2G37760 | 38.783 | 263 | 142 | 5 | 34 | 286 | 11 | 264 | 3.47e-51 | 169 |
| MsG0480021361.01.T01 | AT2G21260 | 32.993 | 294 | 153 | 6 | 8 | 260 | 2 | 292 | 3.62e-51 | 171 |
| MsG0480021361.01.T01 | AT5G01670 | 31.792 | 346 | 165 | 10 | 2 | 284 | 9 | 346 | 5.95e-49 | 166 |
| MsG0480021361.01.T01 | AT2G37770 | 41.000 | 200 | 80 | 5 | 11 | 177 | 10 | 204 | 1.45e-37 | 134 |
| MsG0480021361.01.T01 | AT2G21250 | 33.191 | 235 | 113 | 6 | 8 | 201 | 2 | 233 | 4.04e-35 | 127 |
| MsG0480021361.01.T01 | AT2G21260 | 32.828 | 198 | 114 | 4 | 82 | 260 | 27 | 224 | 4.63e-34 | 124 |
Find 57 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGTCCTCACCTCAATTT+TGG | 0.184617 | 4:+57079739 | MsG0480021361.01.T01:CDS |
| ATTAACTGCAGGAGAGATTT+TGG | 0.209158 | 4:-57080281 | None:intergenic |
| AAGATGCCAATGATAGGTTT+TGG | 0.319452 | 4:+57079689 | MsG0480021361.01.T01:CDS |
| GGAGGATACAAACTAAGTTT+TGG | 0.339924 | 4:+57080709 | MsG0480021361.01.T01:CDS |
| CAATGGGAATTGCCCCTTGC+TGG | 0.340720 | 4:-57081090 | None:intergenic |
| TTGGTTGATGCTATTGAAAC+AGG | 0.349605 | 4:+57079758 | MsG0480021361.01.T01:CDS |
| AAAACATTGAAATATTTGAT+TGG | 0.366649 | 4:+57081143 | MsG0480021361.01.T01:CDS |
| AATCTCTCCTGCAGTTAATC+AGG | 0.372724 | 4:+57080285 | MsG0480021361.01.T01:CDS |
| GAAATGTTTGTATCTGATAA+TGG | 0.381759 | 4:+57081229 | MsG0480021361.01.T01:CDS |
| TCTATTGGTGTTAGCAACTT+TGG | 0.384780 | 4:+57080226 | MsG0480021361.01.T01:CDS |
| CCAGAGGTGATGCTAAATTC+AGG | 0.396623 | 4:+57079662 | MsG0480021361.01.T01:CDS |
| AAACATTGAAATATTTGATT+GGG | 0.403714 | 4:+57081144 | MsG0480021361.01.T01:CDS |
| TATGGAAGAATGTTATAGAT+TGG | 0.404875 | 4:+57080192 | MsG0480021361.01.T01:CDS |
| GATGTTCCAAAACCTATCAT+TGG | 0.419966 | 4:-57079695 | None:intergenic |
| ATGGAAGAATGTTATAGATT+GGG | 0.431421 | 4:+57080193 | MsG0480021361.01.T01:CDS |
| ATTGTACAGAAAACTGAAGT+TGG | 0.437712 | 4:+57080054 | MsG0480021361.01.T01:intron |
| TTGGGCTTAGCAAAGTCTAT+TGG | 0.442567 | 4:+57080211 | MsG0480021361.01.T01:CDS |
| ACATCTTGTTTCAACCTCAC+TGG | 0.444084 | 4:-57080106 | None:intergenic |
| TCCTCAATGCAGACTTCTAA+AGG | 0.473407 | 4:+57081204 | MsG0480021361.01.T01:CDS |
| CCTGAATTTAGCATCACCTC+TGG | 0.475460 | 4:-57079662 | None:intergenic |
| AAAAGGAACATGGGAAGCTA+TGG | 0.478713 | 4:+57080174 | MsG0480021361.01.T01:CDS |
| AATAGCATCAACCAAAATTG+AGG | 0.486174 | 4:-57079750 | None:intergenic |
| TTTGGCACTTTCTAAGAGCA+TGG | 0.509300 | 4:-57080263 | None:intergenic |
| GCCGTCCCACAGCTCTTCCA+AGG | 0.512840 | 4:-57081263 | None:intergenic |
| GTGTCAAAAGCTTTAAAGCT+AGG | 0.516792 | 4:+57079839 | MsG0480021361.01.T01:CDS |
| TTATGCAGATAGCACTAAGA+TGG | 0.518946 | 4:+57081062 | MsG0480021361.01.T01:intron |
| TAATGGACCTTACAAAACCT+TGG | 0.524158 | 4:+57081246 | MsG0480021361.01.T01:CDS |
| CAGAGGTGATGCTAAATTCA+GGG | 0.531151 | 4:+57079663 | MsG0480021361.01.T01:CDS |
| ATTGAATTCTCCATCACTGC+AGG | 0.533560 | 4:-57080736 | None:intergenic |
| AAAACTGAAGTTGGACTATG+TGG | 0.535532 | 4:+57080063 | MsG0480021361.01.T01:CDS |
| AGGACTTCATGTGGTGGAGA+GGG | 0.552325 | 4:-57079725 | None:intergenic |
| TGAAAAGCTTCAACAAGGAA+AGG | 0.559851 | 4:+57081113 | MsG0480021361.01.T01:CDS |
| ACCTTTAGAAGTCTGCATTG+AGG | 0.563304 | 4:-57081205 | None:intergenic |
| AGAGAATTCTGCAAGCAGAA+AGG | 0.568462 | 4:+57080658 | MsG0480021361.01.T01:CDS |
| TGTCATACCTGATTAACTGC+AGG | 0.568797 | 4:-57080292 | None:intergenic |
| ATTTGATTCACTTTCCAGTG+AGG | 0.573209 | 4:+57080092 | MsG0480021361.01.T01:CDS |
| CAAAACCTTGGAAGAGCTGT+GGG | 0.578336 | 4:+57081258 | MsG0480021361.01.T01:CDS |
| TAAGATGGATATACCAGCAA+GGG | 0.578343 | 4:+57081077 | MsG0480021361.01.T01:CDS |
| TAGAAAGAAAAGTGTAGCCC+AGG | 0.580823 | 4:+57080780 | MsG0480021361.01.T01:CDS |
| GTGAGTGCATGGTCACCACT+AGG | 0.581102 | 4:+57080688 | MsG0480021361.01.T01:CDS |
| AAGGAATTCATGTGAGTGCA+TGG | 0.584602 | 4:+57080677 | MsG0480021361.01.T01:CDS |
| GAGGACTTCATGTGGTGGAG+AGG | 0.593214 | 4:-57079726 | None:intergenic |
| TATAATACTGAAGAACCTCT+AGG | 0.593820 | 4:+57079809 | MsG0480021361.01.T01:CDS |
| TTTGACACAGCTTGGCCTAG+AGG | 0.596039 | 4:-57079824 | None:intergenic |
| GGAAGCAAAGAAAGTTCCAG+AGG | 0.612070 | 4:+57079646 | MsG0480021361.01.T01:CDS |
| ACCTTGGAAGAGCTGTGGGA+CGG | 0.612908 | 4:+57081262 | MsG0480021361.01.T01:CDS |
| ACAAAACCTTGGAAGAGCTG+TGG | 0.614469 | 4:+57081257 | MsG0480021361.01.T01:CDS |
| CATTGTGAAAAGCTTCAACA+AGG | 0.618998 | 4:+57081108 | MsG0480021361.01.T01:CDS |
| CTTAGTTTGTATCCTCCTAG+TGG | 0.632741 | 4:-57080703 | None:intergenic |
| AGGTTGAAACAAGATGTTGA+AGG | 0.640905 | 4:+57080112 | MsG0480021361.01.T01:CDS |
| AGGCTATAACATTAAGAGTG+AGG | 0.656023 | 4:+57080132 | MsG0480021361.01.T01:CDS |
| CATCAACCAAAATTGAGGTG+AGG | 0.663706 | 4:-57079745 | None:intergenic |
| CTAAGATGGATATACCAGCA+AGG | 0.682956 | 4:+57081076 | MsG0480021361.01.T01:CDS |
| AGTGCATGGTCACCACTAGG+AGG | 0.692544 | 4:+57080691 | MsG0480021361.01.T01:CDS |
| AAGATGGATATACCAGCAAG+GGG | 0.693926 | 4:+57081078 | MsG0480021361.01.T01:CDS |
| GAGGTGAGGACTTCATGTGG+TGG | 0.731533 | 4:-57079731 | None:intergenic |
| ATTGAGGTGAGGACTTCATG+TGG | 0.753402 | 4:-57079734 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAGAATTAGAAAAAC+AGG | - | Chr4:57080879-57080898 | None:intergenic | 15.0% |
| !! | AAAACATTGAAATATTTGAT+TGG | + | Chr4:57081143-57081162 | MsG0480021361.01.T01:CDS | 15.0% |
| !! | AAACATTGAAATATTTGATT+GGG | + | Chr4:57081144-57081163 | MsG0480021361.01.T01:CDS | 15.0% |
| !! | CAATATATAATATAAAGAGT+TGG | - | Chr4:57080964-57080983 | None:intergenic | 15.0% |
| !! | ATATTAGATACCATATGTAA+AGG | - | Chr4:57080441-57080460 | None:intergenic | 20.0% |
| !! | TATTAGATACCATATGTAAA+GGG | - | Chr4:57080440-57080459 | None:intergenic | 20.0% |
| !! | TTAGCCAATTAAAAATTTAG+TGG | + | Chr4:57080835-57080854 | MsG0480021361.01.T01:intron | 20.0% |
| !!! | AACTCCACTAAATTTTTAAT+TGG | - | Chr4:57080842-57080861 | None:intergenic | 20.0% |
| !!! | ATCATTCCTTTTGATATAAA+AGG | + | Chr4:57080157-57080176 | MsG0480021361.01.T01:CDS | 20.0% |
| !!! | ATTTTTAATTGGCTAAACAT+AGG | - | Chr4:57080831-57080850 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTTTCTTTCTCAA+TGG | + | Chr4:57080891-57080910 | MsG0480021361.01.T01:intron | 20.0% |
| !!! | TAATTTTGTCTAATTCTTGT+TGG | - | Chr4:57081177-57081196 | None:intergenic | 20.0% |
| !!! | TTTTGATATAAAAGGAACAT+GGG | + | Chr4:57080165-57080184 | MsG0480021361.01.T01:CDS | 20.0% |
| !!! | TTTTGTTACAAATTCTTAGT+TGG | + | Chr4:57080593-57080612 | MsG0480021361.01.T01:intron | 20.0% |
| ! | ACAAATTCTTAGTTGGATTT+AGG | + | Chr4:57080600-57080619 | MsG0480021361.01.T01:intron | 25.0% |
| ! | ACATAGAGATCAAATACTAT+TGG | + | Chr4:57080345-57080364 | MsG0480021361.01.T01:intron | 25.0% |
| ! | ATGGAAGAATGTTATAGATT+GGG | + | Chr4:57080193-57080212 | MsG0480021361.01.T01:CDS | 25.0% |
| ! | GAAATGTTTGTATCTGATAA+TGG | + | Chr4:57081229-57081248 | MsG0480021361.01.T01:CDS | 25.0% |
| ! | TATGGAAGAATGTTATAGAT+TGG | + | Chr4:57080192-57080211 | MsG0480021361.01.T01:CDS | 25.0% |
| ! | TTTCAATGTAACAGTAGTAT+AGG | - | Chr4:57081018-57081037 | None:intergenic | 25.0% |
| !! | CATGTTCCTTTTATATCAAA+AGG | - | Chr4:57080166-57080185 | None:intergenic | 25.0% |
| !! | CTTTTGATATAAAAGGAACA+TGG | + | Chr4:57080164-57080183 | MsG0480021361.01.T01:CDS | 25.0% |
| !! | TCATTCTTTCTAGAAATTTC+TGG | + | Chr4:57080468-57080487 | MsG0480021361.01.T01:intron | 25.0% |
| !!! | TTGAAAGTCTATTTCTAATG+TGG | + | Chr4:57081032-57081051 | MsG0480021361.01.T01:intron | 25.0% |
| !!! | TTTCCATTTTGAAATAACAG+AGG | - | Chr4:57080374-57080393 | None:intergenic | 25.0% |
| AAAATAAATGATCTGCACCT+GGG | - | Chr4:57080800-57080819 | None:intergenic | 30.0% | |
| AATAGCATCAACCAAAATTG+AGG | - | Chr4:57079753-57079772 | None:intergenic | 30.0% | |
| AATCACAAACGTAAAAGAAG+CGG | - | Chr4:57080000-57080019 | None:intergenic | 30.0% | |
| AATTCTTAGTTGGATTTAGG+TGG | + | Chr4:57080603-57080622 | MsG0480021361.01.T01:intron | 30.0% | |
| ATTGTACAGAAAACTGAAGT+TGG | + | Chr4:57080054-57080073 | MsG0480021361.01.T01:intron | 30.0% | |
| CAGATATTTCCCTTTACATA+TGG | + | Chr4:57080428-57080447 | MsG0480021361.01.T01:intron | 30.0% | |
| TAAAATAAATGATCTGCACC+TGG | - | Chr4:57080801-57080820 | None:intergenic | 30.0% | |
| TATAATACTGAAGAACCTCT+AGG | + | Chr4:57079809-57079828 | MsG0480021361.01.T01:CDS | 30.0% | |
| TCAATACTTTCTAATCGACT+AGG | + | Chr4:57080512-57080531 | MsG0480021361.01.T01:intron | 30.0% | |
| ! | TTGTTGAAGCTTTTCACAAT+GGG | - | Chr4:57081109-57081128 | None:intergenic | 30.0% |
| !! | TTGCCTCTGTTATTTCAAAA+TGG | + | Chr4:57080368-57080387 | MsG0480021361.01.T01:intron | 30.0% |
| AAAACTGAAGTTGGACTATG+TGG | + | Chr4:57080063-57080082 | MsG0480021361.01.T01:CDS | 35.0% | |
| AAGAGAAATATGCTTGCTTG+AGG | - | Chr4:57079958-57079977 | None:intergenic | 35.0% | |
| AGAGAAATATGCTTGCTTGA+GGG | - | Chr4:57079957-57079976 | None:intergenic | 35.0% | |
| AGGCTATAACATTAAGAGTG+AGG | + | Chr4:57080132-57080151 | MsG0480021361.01.T01:CDS | 35.0% | |
| AGGTTGAAACAAGATGTTGA+AGG | + | Chr4:57080112-57080131 | MsG0480021361.01.T01:CDS | 35.0% | |
| ATTTGATTCACTTTCCAGTG+AGG | + | Chr4:57080092-57080111 | MsG0480021361.01.T01:CDS | 35.0% | |
| CAATGGTCAAACTTTAGACT+TGG | + | Chr4:57080908-57080927 | MsG0480021361.01.T01:intron | 35.0% | |
| CATTGTGAAAAGCTTCAACA+AGG | + | Chr4:57081108-57081127 | MsG0480021361.01.T01:CDS | 35.0% | |
| GATGTTCCAAAACCTATCAT+TGG | - | Chr4:57079698-57079717 | None:intergenic | 35.0% | |
| TAAGATGGATATACCAGCAA+GGG | + | Chr4:57081077-57081096 | MsG0480021361.01.T01:CDS | 35.0% | |
| TATCTGACGTCTATGAGTAT+CGG | - | Chr4:57080414-57080433 | None:intergenic | 35.0% | |
| TGAAAAGCTTCAACAAGGAA+AGG | + | Chr4:57081113-57081132 | MsG0480021361.01.T01:CDS | 35.0% | |
| TTATGCAGATAGCACTAAGA+TGG | + | Chr4:57081062-57081081 | MsG0480021361.01.T01:intron | 35.0% | |
| ! | AAGATGCCAATGATAGGTTT+TGG | + | Chr4:57079689-57079708 | MsG0480021361.01.T01:CDS | 35.0% |
| ! | ATTAACTGCAGGAGAGATTT+TGG | - | Chr4:57080284-57080303 | None:intergenic | 35.0% |
| ! | CTTGTTGAAGCTTTTCACAA+TGG | - | Chr4:57081110-57081129 | None:intergenic | 35.0% |
| ! | GGAGGATACAAACTAAGTTT+TGG | + | Chr4:57080709-57080728 | MsG0480021361.01.T01:CDS | 35.0% |
| ! | TAAAGAGTTGGTTCAAGATG+TGG | - | Chr4:57080952-57080971 | None:intergenic | 35.0% |
| ! | TAATGGACCTTACAAAACCT+TGG | + | Chr4:57081246-57081265 | MsG0480021361.01.T01:CDS | 35.0% |
| ! | TTAAAGCTTTTGACACAGCT+TGG | - | Chr4:57079835-57079854 | None:intergenic | 35.0% |
| ! | TTGGTTGATGCTATTGAAAC+AGG | + | Chr4:57079758-57079777 | MsG0480021361.01.T01:CDS | 35.0% |
| ! | TTTAGACTTGGTCATAGAAG+TGG | + | Chr4:57080920-57080939 | MsG0480021361.01.T01:intron | 35.0% |
| !! | GTGTCAAAAGCTTTAAAGCT+AGG | + | Chr4:57079839-57079858 | MsG0480021361.01.T01:CDS | 35.0% |
| !! | TCTATTGGTGTTAGCAACTT+TGG | + | Chr4:57080226-57080245 | MsG0480021361.01.T01:CDS | 35.0% |
| AAAAGGAACATGGGAAGCTA+TGG | + | Chr4:57080174-57080193 | MsG0480021361.01.T01:CDS | 40.0% | |
| AAGATGGATATACCAGCAAG+GGG | + | Chr4:57081078-57081097 | MsG0480021361.01.T01:CDS | 40.0% | |
| AAGGAATTCATGTGAGTGCA+TGG | + | Chr4:57080677-57080696 | MsG0480021361.01.T01:CDS | 40.0% | |
| AATCTCTCCTGCAGTTAATC+AGG | + | Chr4:57080285-57080304 | MsG0480021361.01.T01:CDS | 40.0% | |
| AATGAACTCATCATGGCATC+AGG | + | Chr4:57080627-57080646 | MsG0480021361.01.T01:intron | 40.0% | |
| AGAGAATTCTGCAAGCAGAA+AGG | + | Chr4:57080658-57080677 | MsG0480021361.01.T01:CDS | 40.0% | |
| AGCATCAGTACACCATAACT+TGG | - | Chr4:57079900-57079919 | None:intergenic | 40.0% | |
| AGGTGGAAATGAACTCATCA+TGG | + | Chr4:57080620-57080639 | MsG0480021361.01.T01:intron | 40.0% | |
| ATGAACTCATCATGGCATCA+GGG | + | Chr4:57080628-57080647 | MsG0480021361.01.T01:intron | 40.0% | |
| ATTGAATTCTCCATCACTGC+AGG | - | Chr4:57080739-57080758 | None:intergenic | 40.0% | |
| CAGAGGTGATGCTAAATTCA+GGG | + | Chr4:57079663-57079682 | MsG0480021361.01.T01:CDS | 40.0% | |
| CATCAACCAAAATTGAGGTG+AGG | - | Chr4:57079748-57079767 | None:intergenic | 40.0% | |
| CTAAGATGGATATACCAGCA+AGG | + | Chr4:57081076-57081095 | MsG0480021361.01.T01:CDS | 40.0% | |
| GGGAAAAAGATGCCAATGAT+AGG | + | Chr4:57079683-57079702 | MsG0480021361.01.T01:CDS | 40.0% | |
| TCCTCAATGCAGACTTCTAA+AGG | + | Chr4:57081204-57081223 | MsG0480021361.01.T01:CDS | 40.0% | |
| TGTCATACCTGATTAACTGC+AGG | - | Chr4:57080295-57080314 | None:intergenic | 40.0% | |
| TGTTCGTCACTTCCAAGTTA+TGG | + | Chr4:57079885-57079904 | MsG0480021361.01.T01:intron | 40.0% | |
| TTGGGCTTAGCAAAGTCTAT+TGG | + | Chr4:57080211-57080230 | MsG0480021361.01.T01:CDS | 40.0% | |
| ! | ACATCTTGTTTCAACCTCAC+TGG | - | Chr4:57080109-57080128 | None:intergenic | 40.0% |
| ! | ACCTTTAGAAGTCTGCATTG+AGG | - | Chr4:57081208-57081227 | None:intergenic | 40.0% |
| ! | GTTCATCGCGATTTTTAACG+AGG | - | Chr4:57079865-57079884 | None:intergenic | 40.0% |
| ! | TAGAAAGAAAAGTGTAGCCC+AGG | + | Chr4:57080780-57080799 | MsG0480021361.01.T01:CDS | 40.0% |
| ! | TGAAGTCCTCACCTCAATTT+TGG | + | Chr4:57079739-57079758 | MsG0480021361.01.T01:CDS | 40.0% |
| ! | TTTGGCACTTTCTAAGAGCA+TGG | - | Chr4:57080266-57080285 | None:intergenic | 40.0% |
| !! | AGCTCTTCCAAGGTTTTGTA+AGG | - | Chr4:57081256-57081275 | None:intergenic | 40.0% |
| !! | CTTAGTTTGTATCCTCCTAG+TGG | - | Chr4:57080706-57080725 | None:intergenic | 40.0% |
| ACAAAACCTTGGAAGAGCTG+TGG | + | Chr4:57081257-57081276 | MsG0480021361.01.T01:CDS | 45.0% | |
| ATTGAGGTGAGGACTTCATG+TGG | - | Chr4:57079737-57079756 | None:intergenic | 45.0% | |
| CAAAACCTTGGAAGAGCTGT+GGG | + | Chr4:57081258-57081277 | MsG0480021361.01.T01:CDS | 45.0% | |
| CCAGAGGTGATGCTAAATTC+AGG | + | Chr4:57079662-57079681 | MsG0480021361.01.T01:CDS | 45.0% | |
| CCTGAATTTAGCATCACCTC+TGG | - | Chr4:57079665-57079684 | None:intergenic | 45.0% | |
| GAAATATGCTTGCTTGAGGG+TGG | - | Chr4:57079954-57079973 | None:intergenic | 45.0% | |
| GGAAGCAAAGAAAGTTCCAG+AGG | + | Chr4:57079646-57079665 | MsG0480021361.01.T01:CDS | 45.0% | |
| TGAACTCATCATGGCATCAG+GGG | + | Chr4:57080629-57080648 | MsG0480021361.01.T01:intron | 45.0% | |
| !! | TTTTGAGAGCTGGGAGTACA+AGG | - | Chr4:57079931-57079950 | None:intergenic | 45.0% |
| TTTGACACAGCTTGGCCTAG+AGG | - | Chr4:57079827-57079846 | None:intergenic | 50.0% | |
| ! | AGGACTTCATGTGGTGGAGA+GGG | - | Chr4:57079728-57079747 | None:intergenic | 50.0% |
| !!! | TGAGGGTGGTTTTGAGAGCT+GGG | - | Chr4:57079940-57079959 | None:intergenic | 50.0% |
| !!! | TTGAGGGTGGTTTTGAGAGC+TGG | - | Chr4:57079941-57079960 | None:intergenic | 50.0% |
| !!! | TTTTGGTTCGCCTGCAGTGA+TGG | + | Chr4:57080726-57080745 | MsG0480021361.01.T01:CDS | 50.0% |
| ACCTTGGAAGAGCTGTGGGA+CGG | + | Chr4:57081262-57081281 | MsG0480021361.01.T01:CDS | 55.0% | |
| AGTGCATGGTCACCACTAGG+AGG | + | Chr4:57080691-57080710 | MsG0480021361.01.T01:CDS | 55.0% | |
| CAATGGGAATTGCCCCTTGC+TGG | - | Chr4:57081093-57081112 | None:intergenic | 55.0% | |
| GAGGTGAGGACTTCATGTGG+TGG | - | Chr4:57079734-57079753 | None:intergenic | 55.0% | |
| GTGAGTGCATGGTCACCACT+AGG | + | Chr4:57080688-57080707 | MsG0480021361.01.T01:CDS | 55.0% | |
| ! | GAGCTGGGAGTACAAGGTCA+TGG | - | Chr4:57079925-57079944 | None:intergenic | 55.0% |
| ! | GAGGACTTCATGTGGTGGAG+AGG | - | Chr4:57079729-57079748 | None:intergenic | 55.0% |
| GCCGTCCCACAGCTCTTCCA+AGG | - | Chr4:57081266-57081285 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 57079644 | 57081294 | 57079644 | ID=MsG0480021361.01;Name=MsG0480021361.01 |
| Chr4 | mRNA | 57079644 | 57081294 | 57079644 | ID=MsG0480021361.01.T01;Parent=MsG0480021361.01;Name=MsG0480021361.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|4|0|287 |
| Chr4 | exon | 57079644 | 57079885 | 57079644 | ID=MsG0480021361.01.T01:exon:7158;Parent=MsG0480021361.01.T01 |
| Chr4 | exon | 57080063 | 57080306 | 57080063 | ID=MsG0480021361.01.T01:exon:7159;Parent=MsG0480021361.01.T01 |
| Chr4 | exon | 57080649 | 57080801 | 57080649 | ID=MsG0480021361.01.T01:exon:7160;Parent=MsG0480021361.01.T01 |
| Chr4 | exon | 57081070 | 57081294 | 57081070 | ID=MsG0480021361.01.T01:exon:7161;Parent=MsG0480021361.01.T01 |
| Chr4 | CDS | 57079644 | 57079885 | 57079644 | ID=MsG0480021361.01.T01:cds;Parent=MsG0480021361.01.T01 |
| Chr4 | CDS | 57080063 | 57080306 | 57080063 | ID=MsG0480021361.01.T01:cds;Parent=MsG0480021361.01.T01 |
| Chr4 | CDS | 57080649 | 57080801 | 57080649 | ID=MsG0480021361.01.T01:cds;Parent=MsG0480021361.01.T01 |
| Chr4 | CDS | 57081070 | 57081294 | 57081070 | ID=MsG0480021361.01.T01:cds;Parent=MsG0480021361.01.T01 |
| Gene Sequence |
| Protein sequence |
