AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034730.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034730.01.T02 MTR_4g072350 65.109 321 111 1 1 321 1 320 1.27e-158 446
MsG0680034730.01.T02 MTR_4g072320 65.217 322 105 3 1 322 1 315 9.39e-157 441
MsG0680034730.01.T02 MTR_4g072360 63.863 321 115 1 1 321 1 320 3.40e-154 435
MsG0680034730.01.T02 MTR_6g073110 57.994 319 133 1 1 319 1 318 2.14e-137 392
MsG0680034730.01.T02 MTR_0374s0050 49.538 325 150 4 1 321 1 315 8.63e-107 314
MsG0680034730.01.T02 MTR_3g083130 48.457 324 148 7 2 319 3 313 2.55e-97 290
MsG0680034730.01.T02 MTR_5g097910 49.677 310 137 8 1 301 1 300 1.50e-87 265
MsG0680034730.01.T02 MTR_5g097940 49.677 310 137 8 1 301 1 300 1.50e-87 265
MsG0680034730.01.T02 MTR_5g097900 49.677 310 137 8 1 301 1 300 1.66e-87 265
MsG0680034730.01.T02 MTR_8g070095 44.654 318 162 8 11 322 10 319 1.74e-87 265
MsG0680034730.01.T02 MTR_4g036845 43.987 316 169 6 9 322 6 315 2.03e-86 262
MsG0680034730.01.T02 MTR_8g070115 43.750 320 172 4 4 322 3 315 5.15e-84 256
MsG0680034730.01.T02 MTR_4g021350 43.770 313 166 5 11 322 10 313 4.10e-76 236
MsG0680034730.01.T02 MTR_6g072710 95.575 113 5 0 191 303 1 113 9.99e-75 225
MsG0680034730.01.T02 MTR_7g063580 41.214 313 175 5 11 322 50 354 1.26e-69 221
MsG0680034730.01.T02 MTR_4g021350 44.561 285 149 4 11 295 10 285 2.39e-69 218
MsG0680034730.01.T02 MTR_7g070500 38.141 312 180 6 11 319 17 318 2.52e-68 216
MsG0680034730.01.T02 MTR_4g021450 42.173 313 160 6 11 321 11 304 2.77e-68 216
MsG0680034730.01.T02 MTR_4g021410 41.158 311 162 6 11 319 11 302 1.44e-66 211
MsG0680034730.01.T02 MTR_7g070500 38.811 286 165 4 11 296 17 292 7.52e-64 204
MsG0680034730.01.T02 MTR_4g021410 42.294 279 143 5 43 319 3 265 4.09e-62 199
MsG0680034730.01.T02 MTR_4g072060 39.667 300 164 7 9 299 3 294 4.45e-59 192
MsG0680034730.01.T02 MTR_6g072650 57.237 152 43 1 170 321 7 136 4.37e-54 173
MsG0680034730.01.T02 MTR_4g021450 42.798 243 122 4 81 321 1 228 1.58e-51 170
MsG0680034730.01.T02 MTR_4g021410 41.494 241 124 4 81 319 1 226 9.65e-49 163
MsG0680034730.01.T02 MTR_4g021450 45.000 180 94 2 143 321 10 185 1.47e-47 158
MsG0680034730.01.T02 MTR_6g072705 63.265 49 17 1 105 153 38 85 5.45e-15 69.7
MsG0680034730.01.T02 MTR_7g114990 25.455 330 173 13 6 290 13 314 1.31e-11 65.1
MsG0680034730.01.T01 MTR_4g072350 65.109 321 111 1 1 321 1 320 1.27e-158 446
MsG0680034730.01.T01 MTR_4g072320 65.217 322 105 3 1 322 1 315 9.39e-157 441
MsG0680034730.01.T01 MTR_4g072360 63.863 321 115 1 1 321 1 320 3.40e-154 435
MsG0680034730.01.T01 MTR_6g073110 57.994 319 133 1 1 319 1 318 2.14e-137 392
MsG0680034730.01.T01 MTR_0374s0050 49.538 325 150 4 1 321 1 315 8.63e-107 314
MsG0680034730.01.T01 MTR_3g083130 48.457 324 148 7 2 319 3 313 2.55e-97 290
MsG0680034730.01.T01 MTR_5g097910 49.677 310 137 8 1 301 1 300 1.50e-87 265
MsG0680034730.01.T01 MTR_5g097940 49.677 310 137 8 1 301 1 300 1.50e-87 265
MsG0680034730.01.T01 MTR_5g097900 49.677 310 137 8 1 301 1 300 1.66e-87 265
MsG0680034730.01.T01 MTR_8g070095 44.654 318 162 8 11 322 10 319 1.74e-87 265
MsG0680034730.01.T01 MTR_4g036845 43.987 316 169 6 9 322 6 315 2.03e-86 262
MsG0680034730.01.T01 MTR_8g070115 43.750 320 172 4 4 322 3 315 5.15e-84 256
MsG0680034730.01.T01 MTR_4g021350 43.770 313 166 5 11 322 10 313 4.10e-76 236
MsG0680034730.01.T01 MTR_6g072710 95.575 113 5 0 191 303 1 113 9.99e-75 225
MsG0680034730.01.T01 MTR_7g063580 41.214 313 175 5 11 322 50 354 1.26e-69 221
MsG0680034730.01.T01 MTR_4g021350 44.561 285 149 4 11 295 10 285 2.39e-69 218
MsG0680034730.01.T01 MTR_7g070500 38.141 312 180 6 11 319 17 318 2.52e-68 216
MsG0680034730.01.T01 MTR_4g021450 42.173 313 160 6 11 321 11 304 2.77e-68 216
MsG0680034730.01.T01 MTR_4g021410 41.158 311 162 6 11 319 11 302 1.44e-66 211
MsG0680034730.01.T01 MTR_7g070500 38.811 286 165 4 11 296 17 292 7.52e-64 204
MsG0680034730.01.T01 MTR_4g021410 42.294 279 143 5 43 319 3 265 4.09e-62 199
MsG0680034730.01.T01 MTR_4g072060 39.667 300 164 7 9 299 3 294 4.45e-59 192
MsG0680034730.01.T01 MTR_6g072650 57.237 152 43 1 170 321 7 136 4.37e-54 173
MsG0680034730.01.T01 MTR_4g021450 42.798 243 122 4 81 321 1 228 1.58e-51 170
MsG0680034730.01.T01 MTR_4g021410 41.494 241 124 4 81 319 1 226 9.65e-49 163
MsG0680034730.01.T01 MTR_4g021450 45.000 180 94 2 143 321 10 185 1.47e-47 158
MsG0680034730.01.T01 MTR_6g072705 63.265 49 17 1 105 153 38 85 5.45e-15 69.7
MsG0680034730.01.T01 MTR_7g114990 25.455 330 173 13 6 290 13 314 1.31e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034730.01.T02 AT1G59960 46.037 328 169 4 1 322 1 326 4.67e-107 315
MsG0680034730.01.T02 AT1G59950 48.065 310 157 3 15 322 13 320 1.51e-98 293
MsG0680034730.01.T02 AT2G37770 46.106 321 165 4 3 322 2 315 6.00e-92 276
MsG0680034730.01.T02 AT2G37790 46.006 313 160 4 11 322 10 314 1.10e-91 276
MsG0680034730.01.T02 AT2G37760 45.367 313 159 4 11 322 10 311 1.98e-86 262
MsG0680034730.01.T02 AT2G37760 45.367 313 159 4 11 322 10 311 1.98e-86 262
MsG0680034730.01.T02 AT5G62420 42.222 315 173 7 11 322 8 316 3.95e-86 262
MsG0680034730.01.T02 AT3G53880 44.728 313 165 4 11 322 10 315 8.71e-85 258
MsG0680034730.01.T02 AT2G37760 46.207 290 145 3 11 300 10 288 1.71e-82 251
MsG0680034730.01.T02 AT2G37760 45.993 287 144 3 11 297 10 285 3.07e-81 248
MsG0680034730.01.T02 AT2G37760 45.993 287 144 3 11 297 10 285 3.07e-81 248
MsG0680034730.01.T02 AT3G53880 44.561 285 151 3 11 295 10 287 1.78e-77 239
MsG0680034730.01.T02 AT5G01670 37.188 320 188 6 3 319 10 319 1.35e-74 233
MsG0680034730.01.T02 AT2G37760 45.802 262 137 3 62 322 8 265 7.28e-70 218
MsG0680034730.01.T02 AT2G37760 45.802 262 137 3 62 322 8 265 7.28e-70 218
MsG0680034730.01.T02 AT5G01670 34.294 347 188 7 3 319 10 346 1.23e-68 218
MsG0680034730.01.T02 AT2G21250 36.913 298 173 6 8 296 2 293 4.88e-63 202
MsG0680034730.01.T02 AT2G21260 36.700 297 173 6 8 295 2 292 9.20e-63 202
MsG0680034730.01.T02 AT2G37770 49.524 210 99 3 3 212 2 204 5.80e-62 199
MsG0680034730.01.T02 AT2G21250 36.134 238 137 6 8 236 2 233 3.80e-45 154
MsG0680034730.01.T02 AT2G21260 34.101 217 132 4 92 299 12 226 4.48e-38 135
MsG0680034730.01.T02 AT5G53580 24.172 302 170 10 21 286 64 342 1.69e-14 73.9
MsG0680034730.01.T01 AT1G59960 46.037 328 169 4 1 322 1 326 4.67e-107 315
MsG0680034730.01.T01 AT1G59950 48.065 310 157 3 15 322 13 320 1.51e-98 293
MsG0680034730.01.T01 AT2G37770 46.106 321 165 4 3 322 2 315 6.00e-92 276
MsG0680034730.01.T01 AT2G37790 46.006 313 160 4 11 322 10 314 1.10e-91 276
MsG0680034730.01.T01 AT2G37760 45.367 313 159 4 11 322 10 311 1.98e-86 262
MsG0680034730.01.T01 AT2G37760 45.367 313 159 4 11 322 10 311 1.98e-86 262
MsG0680034730.01.T01 AT5G62420 42.222 315 173 7 11 322 8 316 3.95e-86 262
MsG0680034730.01.T01 AT3G53880 44.728 313 165 4 11 322 10 315 8.71e-85 258
MsG0680034730.01.T01 AT2G37760 46.207 290 145 3 11 300 10 288 1.71e-82 251
MsG0680034730.01.T01 AT2G37760 45.993 287 144 3 11 297 10 285 3.07e-81 248
MsG0680034730.01.T01 AT2G37760 45.993 287 144 3 11 297 10 285 3.07e-81 248
MsG0680034730.01.T01 AT3G53880 44.561 285 151 3 11 295 10 287 1.78e-77 239
MsG0680034730.01.T01 AT5G01670 37.188 320 188 6 3 319 10 319 1.35e-74 233
MsG0680034730.01.T01 AT2G37760 45.802 262 137 3 62 322 8 265 7.28e-70 218
MsG0680034730.01.T01 AT2G37760 45.802 262 137 3 62 322 8 265 7.28e-70 218
MsG0680034730.01.T01 AT5G01670 34.294 347 188 7 3 319 10 346 1.23e-68 218
MsG0680034730.01.T01 AT2G21250 36.913 298 173 6 8 296 2 293 4.88e-63 202
MsG0680034730.01.T01 AT2G21260 36.700 297 173 6 8 295 2 292 9.20e-63 202
MsG0680034730.01.T01 AT2G37770 49.524 210 99 3 3 212 2 204 5.80e-62 199
MsG0680034730.01.T01 AT2G21250 36.134 238 137 6 8 236 2 233 3.80e-45 154
MsG0680034730.01.T01 AT2G21260 34.101 217 132 4 92 299 12 226 4.48e-38 135
MsG0680034730.01.T01 AT5G53580 24.172 302 170 10 21 286 64 342 1.69e-14 73.9

Find 0 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAAACATGTTTATAAA+TGG - Chr6:93535709-93535728 MsG0680034730.01.T02:CDS 10.0%
!! AACATAAAATGTTATATCAA+AGG - Chr6:93534472-93534491 MsG0680034730.01.T02:intron 15.0%
!! ACAAAAAAAAGTAAATTAAC+GGG - Chr6:93534658-93534677 MsG0680034730.01.T02:intron 15.0%
!! CTTGAACAAATATTTAAAAA+GGG - Chr6:93534405-93534424 MsG0680034730.01.T02:CDS 15.0%
!! GACAAAAAAAAGTAAATTAA+CGG - Chr6:93534657-93534676 MsG0680034730.01.T02:intron 15.0%
!! TCTTGAACAAATATTTAAAA+AGG - Chr6:93534404-93534423 MsG0680034730.01.T02:CDS 15.0%
!! TTGAACAAATATTTAAAAAG+GGG - Chr6:93534406-93534425 MsG0680034730.01.T02:CDS 15.0%
!!! CTTTTTTCTATTTAATTCAA+AGG + Chr6:93535083-93535102 None:intergenic 15.0%
!!! TACTATATCTTTTACTTTTA+TGG - Chr6:93533623-93533642 MsG0680034730.01.T02:CDS 15.0%
!!! TTTTGAATATCTTTTTATGT+TGG - Chr6:93533728-93533747 MsG0680034730.01.T02:intron 15.0%
!! AACTTTATTACAATAACGAA+AGG - Chr6:93534254-93534273 MsG0680034730.01.T02:CDS 20.0%
!! AATAGCCAAATAATGTATAT+TGG + Chr6:93533688-93533707 None:intergenic 20.0%
!! AATATACATTATTTGGCTAT+TGG - Chr6:93533687-93533706 MsG0680034730.01.T02:CDS 20.0%
!! ACTCAAAATCAAATATTTCA+AGG + Chr6:93535942-93535961 None:intergenic 20.0%
!! ATCGATTAAAAATAGCAATT+TGG - Chr6:93535279-93535298 MsG0680034730.01.T02:intron 20.0%
!! ATTGTAAGTGGATAAATATA+GGG - Chr6:93533931-93533950 MsG0680034730.01.T02:intron 20.0%
!! CATTTCCAATATACATTATT+TGG - Chr6:93533680-93533699 MsG0680034730.01.T02:CDS 20.0%
!! TATATTAATTCATGTCATGA+TGG - Chr6:93535816-93535835 MsG0680034730.01.T02:CDS 20.0%
!! TCAGTAAGTTGTTAAAATAT+GGG - Chr6:93533963-93533982 MsG0680034730.01.T02:intron 20.0%
!! TTAAAACATTCATAAAGTCA+TGG + Chr6:93533844-93533863 None:intergenic 20.0%
!! TTGAAATATTCACAAAATCA+GGG - Chr6:93534054-93534073 MsG0680034730.01.T02:intron 20.0%
!!! ACTTTATGAATGTTTTAAGA+AGG - Chr6:93533846-93533865 MsG0680034730.01.T02:intron 20.0%
!!! ATAAAGTTGTTTTAAAACCA+TGG + Chr6:93534242-93534261 None:intergenic 20.0%
!!! ATTTTGTGAATATTTCAAAC+TGG + Chr6:93534052-93534071 None:intergenic 20.0%
!!! CACATTATGATATAATTTTC+AGG - Chr6:93535840-93535859 MsG0680034730.01.T02:CDS 20.0%
!!! GATTTTTGTAAACATAGTTT+CGG - Chr6:93535377-93535396 MsG0680034730.01.T02:intron 20.0%
!!! TTGGAATTGATTTCTATAAT+AGG - Chr6:93533747-93533766 MsG0680034730.01.T02:intron 20.0%
!!! TTTCAACTGATCAAATTTTA+CGG - Chr6:93534172-93534191 MsG0680034730.01.T02:intron 20.0%
!!! TTTGAAATATTCACAAAATC+AGG - Chr6:93534053-93534072 MsG0680034730.01.T02:intron 20.0%
! AACAAGAAGAAAGAAAAACA+TGG - Chr6:93533223-93533242 MsG0680034730.01.T02:CDS 25.0%
! AAGGATTTAAGGAACAATAA+TGG + Chr6:93534709-93534728 None:intergenic 25.0%
! AGAAATGTTGTAAATCGTAA+GGG + Chr6:93535772-93535791 None:intergenic 25.0%
! AGATATTAAAATCGAGTAGA+TGG + Chr6:93534090-93534109 None:intergenic 25.0%
! ATTCATAGCTTACTTTAATG+TGG + Chr6:93533552-93533571 None:intergenic 25.0%
! ATTTGATCAGTTGAAATTAG+CGG + Chr6:93534168-93534187 None:intergenic 25.0%
! CAAAAAATTGACTAAACTCT+TGG - Chr6:93534950-93534969 MsG0680034730.01.T02:intron 25.0%
! CAGTAAGTTGTTAAAATATG+GGG - Chr6:93533964-93533983 MsG0680034730.01.T02:intron 25.0%
! CTTTACAAAATATGCATGAT+TGG + Chr6:93533188-93533207 None:intergenic 25.0%
! GATTGTAAGTGGATAAATAT+AGG - Chr6:93533930-93533949 MsG0680034730.01.T02:intron 25.0%
! GGGAAAATATTGAAAACAAT+GGG - Chr6:93534426-93534445 MsG0680034730.01.T02:CDS 25.0%
! GTCAGTAAGTTGTTAAAATA+TGG - Chr6:93533962-93533981 MsG0680034730.01.T02:intron 25.0%
! TATTACGCAAATATTACACA+TGG - Chr6:93534141-93534160 MsG0680034730.01.T02:intron 25.0%
! TCCTAATCATGTACAAAAAT+AGG + Chr6:93535029-93535048 None:intergenic 25.0%
! TGAAATGTGGTATATTTACA+TGG - Chr6:93534277-93534296 MsG0680034730.01.T02:CDS 25.0%
! TGTATGAACCATTAAAAGTT+CGG - Chr6:93535443-93535462 MsG0680034730.01.T02:intron 25.0%
! TGTTTAGTGTACTTATTTAG+TGG + Chr6:93535410-93535429 None:intergenic 25.0%
! TTTAATGGTTCATACAAAAC+TGG + Chr6:93535439-93535458 None:intergenic 25.0%
!! CAAAAAAGTGTATATTTCCA+TGG - Chr6:93534222-93534241 MsG0680034730.01.T02:intron 25.0%
!! GTTAACTTCAATTCTTTTTC+AGG - Chr6:93535497-93535516 MsG0680034730.01.T02:intron 25.0%
!! TTCAACTGATCAAATTTTAC+GGG - Chr6:93534173-93534192 MsG0680034730.01.T02:intron 25.0%
!!! CAAGAGTTTAGTCAATTTTT+TGG + Chr6:93534952-93534971 None:intergenic 25.0%
!!! GCTATTTTTAATCGATTACT+AGG + Chr6:93535275-93535294 None:intergenic 25.0%
AAAGGGAAGTAAATCTTCTT+TGG + Chr6:93534847-93534866 None:intergenic 30.0%
AAATATGCATGATTGGCAAT+TGG + Chr6:93533181-93533200 None:intergenic 30.0%
AGAAGTTACACAAGGATTTA+AGG + Chr6:93534720-93534739 None:intergenic 30.0%
AGCGTAAACAAATAGCAATT+TGG - Chr6:93535305-93535324 MsG0680034730.01.T02:intron 30.0%
AGTTCGTAAACATCACAATT+TGG - Chr6:93535158-93535177 MsG0680034730.01.T02:intron 30.0%
ATTGACGAACTAAACTGAAT+CGG - Chr6:93535122-93535141 MsG0680034730.01.T02:intron 30.0%
CAGAAATGTTGTAAATCGTA+AGG + Chr6:93535773-93535792 None:intergenic 30.0%
CAGTTCATAAAGATTCAGTT+TGG - Chr6:93535335-93535354 MsG0680034730.01.T02:intron 30.0%
CATCTATATAAAGTGGTTTG+TGG + Chr6:93533150-93533169 None:intergenic 30.0%
CTTCTTTGGTAAATATGACA+GGG + Chr6:93534833-93534852 None:intergenic 30.0%
GACAACTTTGTAAACAAATG+TGG - Chr6:93534448-93534467 MsG0680034730.01.T02:CDS 30.0%
GGGGAAAATATTGAAAACAA+TGG - Chr6:93534425-93534444 MsG0680034730.01.T02:CDS 30.0%
GTCCTTCAAAGATTATGTTA+GGG - Chr6:93533899-93533918 MsG0680034730.01.T02:intron 30.0%
TACTTCCCTTTGATATAGAA+GGG - Chr6:93534856-93534875 MsG0680034730.01.T02:intron 30.0%
TCAAAAGACCAAAAGAAACA+AGG + Chr6:93533714-93533733 None:intergenic 30.0%
TCGAGAGTTTAATAGAATCA+GGG - Chr6:93534025-93534044 MsG0680034730.01.T02:intron 30.0%
TCGATCTTTATCTGATTCAT+TGG - Chr6:93534778-93534797 MsG0680034730.01.T02:intron 30.0%
TCTTCTTTGGTAAATATGAC+AGG + Chr6:93534834-93534853 None:intergenic 30.0%
TTACTTCCCTTTGATATAGA+AGG - Chr6:93534855-93534874 MsG0680034730.01.T02:intron 30.0%
TTCGAGAGTTTAATAGAATC+AGG - Chr6:93534024-93534043 MsG0680034730.01.T02:intron 30.0%
TTGTAAACATAGTTTCGGTT+CGG - Chr6:93535382-93535401 MsG0680034730.01.T02:intron 30.0%
TTGTACATAGAAGTTACACA+AGG + Chr6:93534728-93534747 None:intergenic 30.0%
TTTGTTGATGCAATCAAAGT+TGG - Chr6:93533356-93533375 MsG0680034730.01.T02:intron 30.0%
! AAACTGAACCGAACTTTTAA+TGG + Chr6:93535454-93535473 None:intergenic 30.0%
! AATGGCAAAAAGCTTTAACA+AGG - Chr6:93535900-93535919 MsG0680034730.01.T02:CDS 30.0%
! ACAATGTTGTTTAGAAAGCT+GGG - Chr6:93534744-93534763 MsG0680034730.01.T02:intron 30.0%
! CAAAAAGCTTTAACAAGGAA+AGG - Chr6:93535905-93535924 MsG0680034730.01.T02:CDS 30.0%
! GGTTTCTTTTCCCTAAAAAA+TGG - Chr6:93534626-93534645 MsG0680034730.01.T02:intron 30.0%
! GTTTTATCGAACTGTTATGA+TGG - Chr6:93535470-93535489 MsG0680034730.01.T02:intron 30.0%
! TACAATGTTGTTTAGAAAGC+TGG - Chr6:93534743-93534762 MsG0680034730.01.T02:intron 30.0%
! TTAAATCGATGTCCTGTTTT+CGG - Chr6:93534347-93534366 MsG0680034730.01.T02:CDS 30.0%
! TTCTTTTCCCTAAAAAATGG+AGG - Chr6:93534629-93534648 MsG0680034730.01.T02:intron 30.0%
!! ATGGAAGAGTGTTATAAGTT+AGG - Chr6:93534891-93534910 MsG0680034730.01.T02:intron 30.0%
!! GACATCGATTTAAAACAATG+TGG + Chr6:93534340-93534359 None:intergenic 30.0%
!! TTTTTAGGGAAAAGAAACCT+TGG + Chr6:93534625-93534644 None:intergenic 30.0%
!!! AACTTCAATTCTTTTTCAGG+TGG - Chr6:93535500-93535519 MsG0680034730.01.T02:intron 30.0%
!!! GCCTATTTTTGTACATGATT+AGG - Chr6:93535025-93535044 MsG0680034730.01.T02:intron 30.0%
!!! TCTCAATCCTCCATTTTTTA+GGG + Chr6:93534639-93534658 None:intergenic 30.0%
AAAATGCCAGTCATAGGAAT+GGG - Chr6:93533287-93533306 MsG0680034730.01.T02:CDS 35.0%
AAGGAATTCATGTTAGTGCA+TGG - Chr6:93535574-93535593 MsG0680034730.01.T02:intron 35.0%
AGAAGAAAGAAAAACATGGC+AGG - Chr6:93533227-93533246 MsG0680034730.01.T02:CDS 35.0%
CAATAACGAAAGGTGAAATG+TGG - Chr6:93534264-93534283 MsG0680034730.01.T02:CDS 35.0%
CATGTCCCTTCTATATCAAA+GGG + Chr6:93534864-93534883 None:intergenic 35.0%
CGTCCTTCAAAGATTATGTT+AGG - Chr6:93533898-93533917 MsG0680034730.01.T02:intron 35.0%
CTTATACAAACACCGAAAAC+AGG + Chr6:93534362-93534381 None:intergenic 35.0%
CTTTACTGTGATGTTCAGTT+CGG - Chr6:93535183-93535202 MsG0680034730.01.T02:intron 35.0%
GAAGCAAGAACATCATTTGA+TGG + Chr6:93533332-93533351 None:intergenic 35.0%
GACCAAAACTAAAAGAGTCA+GGG + Chr6:93533873-93533892 None:intergenic 35.0%
GGCACTTCATCTATATAAAG+TGG + Chr6:93533157-93533176 None:intergenic 35.0%
GGGACTAAATTGATTGTAAG+TGG - Chr6:93533919-93533938 MsG0680034730.01.T02:intron 35.0%
GGTCATGTAGATGATAAAAG+CGG - Chr6:93535730-93535749 MsG0680034730.01.T02:CDS 35.0%
GTAATTCAGATTTCCGTCAA+GGG + Chr6:93534603-93534622 None:intergenic 35.0%
GTCCCTAACATAATCTTTGA+AGG + Chr6:93533904-93533923 None:intergenic 35.0%
GTTCCAAACAAGTTTGAACT+CGG + Chr6:93534559-93534578 None:intergenic 35.0%
TATCAAAGGTTTGTGACCAA+TGG - Chr6:93534486-93534505 MsG0680034730.01.T02:intron 35.0%
TCTATTGGCATATGCAACTA+TGG - Chr6:93534924-93534943 MsG0680034730.01.T02:intron 35.0%
TCTTTATCTGATTCATTGGC+CGG - Chr6:93534782-93534801 MsG0680034730.01.T02:intron 35.0%
TGACCAAAACTAAAAGAGTC+AGG + Chr6:93533874-93533893 None:intergenic 35.0%
TGGAAATGAATGAAGACAGA+AGG + Chr6:93533668-93533687 None:intergenic 35.0%
TGGAGCTTATAAGGTAACTT+GGG - Chr6:93535605-93535624 MsG0680034730.01.T02:intron 35.0%
TTAGGCTTAGCAAAGTCTAT+TGG - Chr6:93534909-93534928 MsG0680034730.01.T02:intron 35.0%
TTGGAGCTTATAAGGTAACT+TGG - Chr6:93535604-93535623 MsG0680034730.01.T02:intron 35.0%
! AATCCGAGTTCAAACTTGTT+TGG - Chr6:93534553-93534572 MsG0680034730.01.T02:intron 35.0%
! GATTTTACCAAACAGTTCGT+CGG + Chr6:93534537-93534556 None:intergenic 35.0%
! TTTAATGTGGTCTTAAGAGC+TGG + Chr6:93533539-93533558 None:intergenic 35.0%
!! CTATTGGTCCTTGTTTCTTT+TGG - Chr6:93533703-93533722 MsG0680034730.01.T02:intron 35.0%
!!! ATAATTTTCAGGTTGCACTC+AGG - Chr6:93535851-93535870 MsG0680034730.01.T02:CDS 35.0%
!!! GTCATGGACTTTTTTGAAAG+CGG + Chr6:93533828-93533847 None:intergenic 35.0%
!!! GTCTCAATCCTCCATTTTTT+AGG + Chr6:93534640-93534659 None:intergenic 35.0%
AACGATTTGAGCTCAACCAT+TGG + Chr6:93534505-93534524 None:intergenic 40.0%
AAGACATAGCAGCTGCAAAA+GGG - Chr6:93535661-93535680 MsG0680034730.01.T02:intron 40.0%
AAGTTAGTCCCTGACTTTGT+AGG - Chr6:93533802-93533821 MsG0680034730.01.T02:intron 40.0%
AGACAGAAGCAGAATCGAAA+TGG + Chr6:93533388-93533407 None:intergenic 40.0%
AGATCATGTCTCAGTCTTAC+CGG + Chr6:93534804-93534823 None:intergenic 40.0%
AGTCCTTGTACAGTCAGTAT+GGG + Chr6:93534113-93534132 None:intergenic 40.0%
ATACATACCTGATTCACTGC+AGG + Chr6:93534993-93535012 None:intergenic 40.0%
CAAAATGCCAGTCATAGGAA+TGG - Chr6:93533286-93533305 MsG0680034730.01.T02:CDS 40.0%
CAAGACCTTAGAAGAGCTTT+GGG - Chr6:93536050-93536069 MsG0680034730.01.T02:five_prime_UTR 40.0%
CCAAATAGGATCAAGTGCAA+TGG - Chr6:93535882-93535901 MsG0680034730.01.T02:CDS 40.0%
CCATGTCCCTTCTATATCAA+AGG + Chr6:93534865-93534884 None:intergenic 40.0%
CCATTGCACTTGATCCTATT+TGG + Chr6:93535885-93535904 None:intergenic 40.0%
CCTTTGATATAGAAGGGACA+TGG - Chr6:93534862-93534881 MsG0680034730.01.T02:intron 40.0%
GACATGTGGCTATCTGAAAA+TGG - Chr6:93536021-93536040 MsG0680034730.01.T02:five_prime_UTR 40.0%
GACGGAAATCTGAATTACCA+AGG - Chr6:93534605-93534624 MsG0680034730.01.T02:intron 40.0%
GGAGCTTATAAGGTAACTTG+GGG - Chr6:93535606-93535625 MsG0680034730.01.T02:intron 40.0%
GGTAATTCAGATTTCCGTCA+AGG + Chr6:93534604-93534623 None:intergenic 40.0%
GTTGTTTAGAAAGCTGGGAA+CGG - Chr6:93534749-93534768 MsG0680034730.01.T02:intron 40.0%
TAATCTGCATCAGTGTTCCA+TGG + Chr6:93533503-93533522 None:intergenic 40.0%
TACAAAGTCAGGGACTAACT+TGG + Chr6:93533803-93533822 None:intergenic 40.0%
TACATACCTGATTCACTGCA+GGG + Chr6:93534992-93535011 None:intergenic 40.0%
TAGACTTTAGCTACCCTTGA+CGG - Chr6:93534587-93534606 MsG0680034730.01.T02:intron 40.0%
TAGTCCTTGTACAGTCAGTA+TGG + Chr6:93534114-93534133 None:intergenic 40.0%
TATAAGGTAACTTGGGGTTC+AGG - Chr6:93535612-93535631 MsG0680034730.01.T02:intron 40.0%
TATGCATGATTGGCAATTGG+TGG + Chr6:93533178-93533197 None:intergenic 40.0%
TATGGAACAGAAGAGGCTAT+AGG - Chr6:93533407-93533426 MsG0680034730.01.T02:intron 40.0%
TTCGATTCTGCTTCTGTCTA+TGG - Chr6:93533389-93533408 MsG0680034730.01.T02:intron 40.0%
TTCTGTCTATGGAACAGAAG+AGG - Chr6:93533400-93533419 MsG0680034730.01.T02:intron 40.0%
! GAAATTGAGGGAGTTTTGCA+AGG - Chr6:93535548-93535567 MsG0680034730.01.T02:intron 40.0%
! GGGACTGTACTGATAGTAAA+TGG - Chr6:93533984-93534003 MsG0680034730.01.T02:intron 40.0%
! GTTTACGAACTGAGTTGAAC+TGG + Chr6:93535149-93535168 None:intergenic 40.0%
! TTTTCATCACTTCCAAGCCA+TGG - Chr6:93533483-93533502 MsG0680034730.01.T02:intron 40.0%
!! GTGGCAAAAGCTTTAGAACA+AGG - Chr6:93533437-93533456 MsG0680034730.01.T02:intron 40.0%
!!! GTCCCTGACTCTTTTAGTTT+TGG - Chr6:93533868-93533887 MsG0680034730.01.T02:intron 40.0%
AAAAGGGAAGACTACAGCTC+AGG - Chr6:93535677-93535696 MsG0680034730.01.T02:CDS 45.0%
AACAGAAGAGGCTATAGGCA+TGG - Chr6:93533412-93533431 MsG0680034730.01.T02:intron 45.0%
AATTTCCCTTGCTGCCAAGA+AGG + Chr6:93535534-93535553 None:intergenic 45.0%
ACAGCGAAGGCAATACTTAG+GGG - Chr6:93535999-93536018 MsG0680034730.01.T02:five_prime_UTR 45.0%
ACATACCTGATTCACTGCAG+GGG + Chr6:93534991-93535010 None:intergenic 45.0%
AGAAGGGACATGGAAAGCAA+TGG - Chr6:93534872-93534891 MsG0680034730.01.T02:intron 45.0%
AGGTGGAGATGAATCCTTCT+TGG - Chr6:93535517-93535536 MsG0680034730.01.T02:intron 45.0%
ATGAATCCTTCTTGGCAGCA+AGG - Chr6:93535525-93535544 MsG0680034730.01.T02:intron 45.0%
CAAGACATAGCAGCTGCAAA+AGG - Chr6:93535660-93535679 MsG0680034730.01.T02:intron 45.0%
CACAGCGAAGGCAATACTTA+GGG - Chr6:93535998-93536017 MsG0680034730.01.T02:five_prime_UTR 45.0%
CCTGAGTTCAACAAGACATC+TGG + Chr6:93533263-93533282 None:intergenic 45.0%
GAAGTTCCCATTCCTATGAC+TGG + Chr6:93533296-93533315 None:intergenic 45.0%
GCAAGACCTTAGAAGAGCTT+TGG - Chr6:93536049-93536068 MsG0680034730.01.T02:five_prime_UTR 45.0%
GGACACAAAATGCCAGTCAT+AGG - Chr6:93533281-93533300 MsG0680034730.01.T02:CDS 45.0%
GTCAGCTCTTGGAGCTTATA+AGG - Chr6:93535596-93535615 MsG0680034730.01.T02:intron 45.0%
TCCATCCCAAAGCTCTTCTA+AGG + Chr6:93536058-93536077 None:intergenic 45.0%
TGAATCCTTCTTGGCAGCAA+GGG - Chr6:93535526-93535545 MsG0680034730.01.T02:intron 45.0%
TGAGTATCCGACGAACTGTT+TGG - Chr6:93534527-93534546 MsG0680034730.01.T02:intron 45.0%
TTAAGCAGATTCCACAGCGA+AGG - Chr6:93535986-93536005 MsG0680034730.01.T02:intron 45.0%
TTGGCAGCAAGGGAAATTGA+GGG - Chr6:93535536-93535555 MsG0680034730.01.T02:intron 45.0%
! AGGGAGTTTTGCAAGGAGAA+AGG - Chr6:93535555-93535574 MsG0680034730.01.T02:intron 45.0%
! CCAGATGTCTTGTTGAACTC+AGG - Chr6:93533260-93533279 MsG0680034730.01.T02:CDS 45.0%
! TCTCCCATACTGACTGTACA+AGG - Chr6:93534107-93534126 MsG0680034730.01.T02:intron 45.0%
!! ACCTTAGAAGAGCTTTGGGA+TGG - Chr6:93536054-93536073 MsG0680034730.01.T02:five_prime_UTR 45.0%
!!! ATTTTCAGGTTGCACTCAGG+TGG - Chr6:93535854-93535873 MsG0680034730.01.T02:CDS 45.0%
!!! TTTTCAGGTTGCACTCAGGT+GGG - Chr6:93535855-93535874 MsG0680034730.01.T02:CDS 45.0%
CCACAGCGAAGGCAATACTT+AGG - Chr6:93535997-93536016 MsG0680034730.01.T02:five_prime_UTR 50.0%
CTCAGGTGGGTGTACCAAAT+AGG - Chr6:93535868-93535887 MsG0680034730.01.T02:CDS 50.0%
CTTGGCAGCAAGGGAAATTG+AGG - Chr6:93535535-93535554 MsG0680034730.01.T02:intron 50.0%
GAAAGCGGCCTACAAAGTCA+GGG + Chr6:93533813-93533832 None:intergenic 50.0%
GGCAATACTTAGGGGACATG+TGG - Chr6:93536007-93536026 MsG0680034730.01.T02:five_prime_UTR 50.0%
GTTAGTGCATGGTCAGCTCT+TGG - Chr6:93535585-93535604 MsG0680034730.01.T02:intron 50.0%
TGAAAGCGGCCTACAAAGTC+AGG + Chr6:93533814-93533833 None:intergenic 50.0%
TGCATCAGTGTTCCATGGCT+TGG + Chr6:93533498-93533517 None:intergenic 50.0%
! CCTAAGTATTGCCTTCGCTG+TGG + Chr6:93536000-93536019 None:intergenic 50.0%
AGAGGCTATAGGCATGGCTG+TGG - Chr6:93533418-93533437 MsG0680034730.01.T02:intron 55.0%
CATCACCCCTGCAGTGAATC+AGG - Chr6:93534983-93535002 MsG0680034730.01.T02:intron 55.0%
CTGATTCACTGCAGGGGTGA+TGG + Chr6:93534985-93535004 None:intergenic 55.0%
! TTGGGGTTCAGGCGCTGTCG+TGG - Chr6:93535623-93535642 MsG0680034730.01.T02:intron 65.0%
Chromosome Type Strat End Strand Name
Chr6 gene 93533146 93536086 93533146 ID=MsG0680034730.01;Name=MsG0680034730.01
Chr6 mRNA 93533146 93536086 93533146 ID=MsG0680034730.01.T01;Parent=MsG0680034730.01;Name=MsG0680034730.01.T01;_AED=0.49;_eAED=0.49;_QI=96|1|1|1|0.75|0.6|5|0|322
Chr6 five_prime_UTR 93535991 93536086 93535991 ID=MsG0680034730.01.T01:five_prime_utr;Parent=MsG0680034730.01.T01
Chr6 CDS 93535674 93535990 93535674 ID=MsG0680034730.01.T01:cds;Parent=MsG0680034730.01.T01
Chr6 CDS 93534228 93534474 93534228 ID=MsG0680034730.01.T01:cds;Parent=MsG0680034730.01.T01
Chr6 CDS 93533534 93533713 93533534 ID=MsG0680034730.01.T01:cds;Parent=MsG0680034730.01.T01
Chr6 CDS 93533146 93533370 93533146 ID=MsG0680034730.01.T01:cds;Parent=MsG0680034730.01.T01
Chr6 mRNA 93533146 93536086 93533146 ID=MsG0680034730.01.T02;Parent=MsG0680034730.01;Name=MsG0680034730.01.T02;_AED=0.49;_eAED=0.49;_QI=96|1|1|1|0.75|0.6|5|0|322
Chr6 five_prime_UTR 93535991 93536086 93535991 ID=MsG0680034730.01.T02:five_prime_utr;Parent=MsG0680034730.01.T02
Chr6 CDS 93535674 93535990 93535674 ID=MsG0680034730.01.T02:cds;Parent=MsG0680034730.01.T02
Chr6 CDS 93534228 93534474 93534228 ID=MsG0680034730.01.T02:cds;Parent=MsG0680034730.01.T02
Chr6 CDS 93533534 93533713 93533534 ID=MsG0680034730.01.T02:cds;Parent=MsG0680034730.01.T02
Chr6 CDS 93533146 93533370 93533146 ID=MsG0680034730.01.T02:cds;Parent=MsG0680034730.01.T02
Gene Sequence

>MsG0680034730.01.T02

ATGGCAGGAAACAAAATTCCAGATGTCTTGTTGAACTCAGGACACAAAATGCCAGTCATAGGAATGGGAACTTCAGTAGACAATCGTCCATCAAATGATGTTCTTGCTTCTATCTTTGTTGATGCAATCAAAGTTGGTTATCGCCATTTCGATTCTGCTTCTGTCTATGGAACAGAAGAGGCTATAGGCATGGCTGTGGCAAAAGCTTTAGAACAAGGTCTTATTAAGAGTAGAGATGAACTTTTCATCACTTCCAAGCCATGGAACACTGATGCAGATTATGATCTTATTGTTCCAGCTCTTAAGACCACATTAAAAAAGCTGGGAACGGAGTATGTCGATCTTTATCTGATTCATTGGCCGGTAAGACTGAGACATGATCTTGAAAACCCTGTCATATTTACCAAAGAAGATTTACTTCCCTTTGATATAGAAGGGACATGGAAAGCAATGGAAGAGTGTTATAAGTTAGGCTTAGCAAAGTCTATTGGCATATGCAACTATGGTACCAAAAAATTGACTAAACTCTTGGAAACTGCTACCATCACCCCTGCAGTGAATCAGGTGGAGATGAATCCTTCTTGGCAGCAAGGGAAATTGAGGGAGTTTTGCAAGGAGAAAGGAATTCATGTTAGTGCATGGTCAGCTCTTGGAGCTTATAAGGTAACTTGGGGTTCAGGCGCTGTCGTGGAGAATCAAATTCTTCAAGACATAGCAGCTGCAAAAGGGAAGACTACAGCTCAGGTTGCACTCAGGTGGGTGTACCAAATAGGATCAAGTGCAATGGCAAAAAGCTTTAACAAGGAAAGGATGACACAAAACCTTGAAATATTTGATTTTGAGTTGAGTGAAGATGACTTAGAGAAGATTAAGCAGATTCCACAGCGAAGGCAATACTTAGGGGACATGTGGCTATCTGAAAATGGATCATGCAAGACCTTAGAAGAGCTTTGGGATGGAGATGTTTGA

>MsG0680034730.01.T01

ATGGCAGGAAACAAAATTCCAGATGTCTTGTTGAACTCAGGACACAAAATGCCAGTCATAGGAATGGGAACTTCAGTAGACAATCGTCCATCAAATGATGTTCTTGCTTCTATCTTTGTTGATGCAATCAAAGTTGGTTATCGCCATTTCGATTCTGCTTCTGTCTATGGAACAGAAGAGGCTATAGGCATGGCTGTGGCAAAAGCTTTAGAACAAGGTCTTATTAAGAGTAGAGATGAACTTTTCATCACTTCCAAGCCATGGAACACTGATGCAGATTATGATCTTATTGTTCCAGCTCTTAAGACCACATTAAAAAAGCTGGGAACGGAGTATGTCGATCTTTATCTGATTCATTGGCCGGTAAGACTGAGACATGATCTTGAAAACCCTGTCATATTTACCAAAGAAGATTTACTTCCCTTTGATATAGAAGGGACATGGAAAGCAATGGAAGAGTGTTATAAGTTAGGCTTAGCAAAGTCTATTGGCATATGCAACTATGGTACCAAAAAATTGACTAAACTCTTGGAAACTGCTACCATCACCCCTGCAGTGAATCAGGTGGAGATGAATCCTTCTTGGCAGCAAGGGAAATTGAGGGAGTTTTGCAAGGAGAAAGGAATTCATGTTAGTGCATGGTCAGCTCTTGGAGCTTATAAGGTAACTTGGGGTTCAGGCGCTGTCGTGGAGAATCAAATTCTTCAAGACATAGCAGCTGCAAAAGGGAAGACTACAGCTCAGGTTGCACTCAGGTGGGTGTACCAAATAGGATCAAGTGCAATGGCAAAAAGCTTTAACAAGGAAAGGATGACACAAAACCTTGAAATATTTGATTTTGAGTTGAGTGAAGATGACTTAGAGAAGATTAAGCAGATTCCACAGCGAAGGCAATACTTAGGGGACATGTGGCTATCTGAAAATGGATCATGCAAGACCTTAGAAGAGCTTTGGGATGGAGATGTTTGA

Protein sequence

>MsG0680034730.01.T02

MAGNKIPDVLLNSGHKMPVIGMGTSVDNRPSNDVLASIFVDAIKVGYRHFDSASVYGTEEAIGMAVAKALEQGLIKSRDELFITSKPWNTDADYDLIVPALKTTLKKLGTEYVDLYLIHWPVRLRHDLENPVIFTKEDLLPFDIEGTWKAMEECYKLGLAKSIGICNYGTKKLTKLLETATITPAVNQVEMNPSWQQGKLREFCKEKGIHVSAWSALGAYKVTWGSGAVVENQILQDIAAAKGKTTAQVALRWVYQIGSSAMAKSFNKERMTQNLEIFDFELSEDDLEKIKQIPQRRQYLGDMWLSENGSCKTLEELWDGDV*

>MsG0680034730.01.T01

MAGNKIPDVLLNSGHKMPVIGMGTSVDNRPSNDVLASIFVDAIKVGYRHFDSASVYGTEEAIGMAVAKALEQGLIKSRDELFITSKPWNTDADYDLIVPALKTTLKKLGTEYVDLYLIHWPVRLRHDLENPVIFTKEDLLPFDIEGTWKAMEECYKLGLAKSIGICNYGTKKLTKLLETATITPAVNQVEMNPSWQQGKLREFCKEKGIHVSAWSALGAYKVTWGSGAVVENQILQDIAAAKGKTTAQVALRWVYQIGSSAMAKSFNKERMTQNLEIFDFELSEDDLEKIKQIPQRRQYLGDMWLSENGSCKTLEELWDGDV*