AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034724.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034724.01.T01 MTR_4g072350 74.857 350 59 1 1 350 1 321 0.0 536
MsG0680034724.01.T01 MTR_4g072360 71.060 349 72 1 1 349 1 320 0.0 513
MsG0680034724.01.T01 MTR_4g072320 71.060 349 66 2 1 349 1 314 0.0 508
MsG0680034724.01.T01 MTR_6g073110 55.331 347 126 1 1 347 1 318 4.62e-143 407
MsG0680034724.01.T01 MTR_0374s0050 47.443 352 145 3 1 349 1 315 1.73e-108 320
MsG0680034724.01.T01 MTR_3g083130 46.398 347 137 8 8 347 9 313 2.05e-98 294
MsG0680034724.01.T01 MTR_5g097900 45.373 335 138 7 16 347 19 311 1.79e-88 268
MsG0680034724.01.T01 MTR_5g097910 46.645 313 131 5 16 326 19 297 4.36e-88 268
MsG0680034724.01.T01 MTR_5g097940 46.645 313 131 5 16 326 19 297 4.36e-88 268
MsG0680034724.01.T01 MTR_4g036845 43.804 347 159 7 5 349 2 314 6.43e-88 267
MsG0680034724.01.T01 MTR_8g070095 42.609 345 156 7 11 349 10 318 3.08e-84 258
MsG0680034724.01.T01 MTR_6g072650 80.000 150 8 1 201 350 10 137 2.97e-81 244
MsG0680034724.01.T01 MTR_8g070115 39.655 348 174 5 3 349 2 314 4.78e-79 244
MsG0680034724.01.T01 MTR_4g021350 40.762 341 162 7 11 349 10 312 9.83e-77 239
MsG0680034724.01.T01 MTR_7g063580 41.076 353 168 7 1 349 37 353 3.75e-76 238
MsG0680034724.01.T01 MTR_4g021410 41.124 338 152 8 11 347 11 302 2.09e-70 222
MsG0680034724.01.T01 MTR_4g021350 41.083 314 146 6 11 323 10 285 9.07e-69 217
MsG0680034724.01.T01 MTR_4g021450 39.714 350 164 8 1 349 1 304 5.29e-68 216
MsG0680034724.01.T01 MTR_7g070500 34.911 338 179 7 13 347 19 318 2.09e-65 210
MsG0680034724.01.T01 MTR_4g021410 41.830 306 134 7 43 347 3 265 2.63e-65 207
MsG0680034724.01.T01 MTR_7g070500 34.494 316 169 5 13 328 19 296 1.60e-59 194
MsG0680034724.01.T01 MTR_4g072060 35.077 325 166 8 9 323 3 292 5.23e-53 177
MsG0680034724.01.T01 MTR_4g021410 41.418 268 114 6 81 347 1 226 1.28e-52 174
MsG0680034724.01.T01 MTR_4g021450 44.118 204 100 4 147 349 38 228 2.02e-50 168
MsG0680034724.01.T01 MTR_4g021450 46.111 180 92 2 171 349 10 185 7.23e-50 165
MsG0680034724.01.T01 MTR_6g072710 63.717 113 41 0 219 331 1 113 1.06e-48 160
MsG0680034724.01.T01 MTR_6g072705 92.157 51 4 0 131 181 35 85 9.02e-27 102
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034724.01.T01 AT1G59960 47.904 334 144 2 17 349 21 325 3.55e-115 337
MsG0680034724.01.T01 AT1G59950 47.305 334 146 2 17 349 15 319 7.82e-106 313
MsG0680034724.01.T01 AT2G37790 45.000 340 150 5 11 349 10 313 1.88e-93 281
MsG0680034724.01.T01 AT2G37770 45.272 349 153 6 3 349 2 314 5.21e-92 278
MsG0680034724.01.T01 AT3G53880 42.647 340 159 5 11 349 10 314 7.62e-86 262
MsG0680034724.01.T01 AT5G62420 40.351 342 167 7 11 349 8 315 4.71e-83 255
MsG0680034724.01.T01 AT2G37760 42.353 340 156 5 11 349 10 310 5.06e-83 254
MsG0680034724.01.T01 AT2G37760 42.353 340 156 5 11 349 10 310 5.06e-83 254
MsG0680034724.01.T01 AT2G37760 42.222 315 143 4 11 325 10 285 1.35e-76 238
MsG0680034724.01.T01 AT2G37760 41.772 316 145 4 11 326 10 286 3.25e-76 236
MsG0680034724.01.T01 AT2G37760 41.772 316 145 4 11 326 10 286 3.25e-76 236
MsG0680034724.01.T01 AT3G53880 41.853 313 147 4 11 323 10 287 3.64e-75 234
MsG0680034724.01.T01 AT5G01670 36.963 349 179 8 2 347 9 319 5.75e-74 232
MsG0680034724.01.T01 AT5G01670 36.364 352 204 9 2 347 9 346 5.93e-72 228
MsG0680034724.01.T01 AT2G37760 42.215 289 134 4 62 349 8 264 1.15e-67 214
MsG0680034724.01.T01 AT2G37760 42.215 289 134 4 62 349 8 264 1.15e-67 214
MsG0680034724.01.T01 AT2G21260 35.890 326 164 8 8 323 2 292 2.37e-60 196
MsG0680034724.01.T01 AT2G21250 34.663 326 168 8 8 323 2 292 2.08e-58 191
MsG0680034724.01.T01 AT2G37770 45.798 238 92 5 3 239 2 203 8.32e-57 186
MsG0680034724.01.T01 AT2G21250 34.831 267 129 8 8 264 2 233 3.51e-42 147
MsG0680034724.01.T01 AT2G21260 35.354 198 118 4 134 321 25 222 2.21e-36 132

Find 74 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGAGCATACAAAGTATTT+TGG 0.154726 6:-93465348 MsG0680034724.01.T01:CDS
TGAAGCTCTCACTTCAATTT+TGG 0.164436 6:-93466153 MsG0680034724.01.T01:CDS
GTGATTCCCTTTGACATAAA+AGG 0.219739 6:-93465750 MsG0680034724.01.T01:CDS
CTGATTAACTGCCGGTAAAA+TGG 0.263668 6:+93465623 None:intergenic
TTTGATACAGCTTCTATCTA+TGG 0.288397 6:-93466101 MsG0680034724.01.T01:CDS
GCAGTTCCTAGGCCTATTAT+TGG 0.318436 6:+93466197 None:intergenic
TTGGGGTTCTAATGCTGTTA+TGG 0.341183 6:-93465329 MsG0680034724.01.T01:CDS
GAAACTAAACCAAGAAGAAT+TGG 0.353464 6:-93464754 MsG0680034724.01.T01:CDS
TATGGAGAATCCTATTCTTC+AGG 0.366943 6:-93465311 MsG0680034724.01.T01:CDS
GTTGCTAACACCGATAGATT+TGG 0.373672 6:+93465686 None:intergenic
GGGGAAAAGATGCCAATAAT+AGG 0.375376 6:-93466209 MsG0680034724.01.T01:CDS
ATGGAAGATTGTTATAGATT+AGG 0.377351 6:-93465714 MsG0680034724.01.T01:CDS
AAAACCTTGAAATATTTGAT+TGG 0.391571 6:-93464776 MsG0680034724.01.T01:CDS
GAAGTGAGAGCTTCATTTGA+TGG 0.392979 6:+93466161 None:intergenic
CATGAGGTGATACTAAATTC+AGG 0.395724 6:-93466230 MsG0680034724.01.T01:CDS
TCAGCAATTTCCTGAAGAAT+AGG 0.400823 6:+93465301 None:intergenic
TCTATCGGTGTTAGCAACTT+TGG 0.413362 6:-93465681 MsG0680034724.01.T01:CDS
GTTTCCAATCAAATATTTCA+AGG 0.435069 6:+93464772 None:intergenic
CATGGCAGCAAGGAAAACTT+AGG 0.450008 6:-93465417 MsG0680034724.01.T01:CDS
TCTTGCAGATAGCACTAAGA+TGG 0.451601 6:-93464857 MsG0680034724.01.T01:intron
AAATGGACCTTACAAATCCT+TGG 0.461855 6:-93464673 MsG0680034724.01.T01:CDS
TCCACAATGCAGACTTTACA+AGG 0.467068 6:-93464715 MsG0680034724.01.T01:CDS
GAGGAGTTGTAGCAGTTCCT+AGG 0.470932 6:+93466186 None:intergenic
TGGATCTCTACTTGATTCAC+TGG 0.472213 6:-93465824 MsG0680034724.01.T01:CDS
GTTGAAGGCTTTAACTTCAC+AGG 0.475700 6:-93465780 MsG0680034724.01.T01:CDS
AGCTCTTCCAAGGATTTGTA+AGG 0.476136 6:+93464666 None:intergenic
ATTGTTTAGGAATCTGAGGT+TGG 0.476463 6:-93465853 MsG0680034724.01.T01:CDS
AGCTTCGCCTAGAGGTTCTT+CGG 0.477001 6:+93466076 None:intergenic
AGAGCTTCATTTGATGGAAG+AGG 0.479484 6:+93466167 None:intergenic
ACATCTTCTTTCAATCTCAC+TGG 0.482395 6:+93465801 None:intergenic
GAATCTGAGGTTGGAGTATG+TGG 0.495354 6:-93465844 MsG0680034724.01.T01:CDS
TGTGTGTGCATGGTCACCAT+TGG 0.497595 6:-93465368 MsG0680034724.01.T01:CDS
TAGAAATAAGAGTGTAGCAC+AGG 0.501879 6:-93465275 MsG0680034724.01.T01:intron
GTGTGTGCATGGTCACCATT+GGG 0.511118 6:-93465367 MsG0680034724.01.T01:CDS
ATGAGGTGATACTAAATTCA+GGG 0.518353 6:-93466229 MsG0680034724.01.T01:CDS
AGAGAACAATGCTTGCTTGA+GGG 0.524372 6:+93465938 None:intergenic
AAGATGCCAATAATAGGCCT+AGG 0.525430 6:-93466203 MsG0680034724.01.T01:CDS
CAAATCCTTGGAAGAGCTGT+GGG 0.525762 6:-93464661 MsG0680034724.01.T01:CDS
TGAAAAGCTTTAACAAAGAG+AGG 0.531243 6:-93464806 MsG0680034724.01.T01:CDS
TCTTATACCTGATTAACTGC+CGG 0.533351 6:+93465615 None:intergenic
CCTTTGACATAAAAGGAACA+TGG 0.535164 6:-93465743 MsG0680034724.01.T01:CDS
GTGTTAAAAGCTTTAGAGAT+CGG 0.536273 6:-93466053 MsG0680034724.01.T01:CDS
TCATCATGACCTTGTTCTCA+AGG 0.538439 6:-93465973 MsG0680034724.01.T01:CDS
AGATTGAAAGAAGATGTTGA+AGG 0.547100 6:-93465795 MsG0680034724.01.T01:CDS
ATGGCAGCAAGGAAAACTTA+GGG 0.550110 6:-93465416 MsG0680034724.01.T01:CDS
CTGAATTTAGTATCACCTCA+TGG 0.555888 6:+93466231 None:intergenic
TAATCTATAACAATCTTCCA+TGG 0.576595 6:+93465716 None:intergenic
AATGTCTGTAACCAATGTCA+AGG 0.577476 6:+93466123 None:intergenic
TTGGTTGATGCCCTTGACAT+TGG 0.578089 6:-93466134 MsG0680034724.01.T01:CDS
AGGGAATTCTGCAGGAACAA+AGG 0.579229 6:-93465397 MsG0680034724.01.T01:CDS
ACCATCCCACAGCTCTTCCA+AGG 0.580081 6:+93464656 None:intergenic
GAAAACTTAGGGAATTCTGC+AGG 0.580488 6:-93465405 MsG0680034724.01.T01:CDS
GAACAATGCTTGCTTGAGGG+TGG 0.589137 6:+93465941 None:intergenic
AAAAGGAACATGGAAAGCCA+TGG 0.591101 6:-93465733 MsG0680034724.01.T01:CDS
ACAAATCCTTGGAAGAGCTG+TGG 0.595019 6:-93464662 MsG0680034724.01.T01:CDS
TATGGTACCGAAGAACCTCT+AGG 0.597666 6:-93466083 MsG0680034724.01.T01:CDS
TTAGGCTTAGCCAAATCTAT+CGG 0.601040 6:-93465696 MsG0680034724.01.T01:CDS
AGGTAGAAATGAATCCATCA+TGG 0.603843 6:-93465435 MsG0680034724.01.T01:CDS
GAGAGAACAATGCTTGCTTG+AGG 0.603868 6:+93465937 None:intergenic
AAATGATACAAAATTAGAGA+AGG 0.607745 6:+93465885 None:intergenic
ATGTCTGTAACCAATGTCAA+GGG 0.608239 6:+93466124 None:intergenic
TGGAATTGTTTAGGAATCTG+AGG 0.613504 6:-93465857 MsG0680034724.01.T01:CDS
AGGCTTTAACTTCACAGGAG+AGG 0.613527 6:-93465775 MsG0680034724.01.T01:CDS
ATGAATCCATCATGGCAGCA+AGG 0.616292 6:-93465427 MsG0680034724.01.T01:CDS
AATACTTTGTATGCTCCCAA+TGG 0.618795 6:+93465352 None:intergenic
AAGGAATTCATGTGTGTGCA+TGG 0.620912 6:-93465378 MsG0680034724.01.T01:CDS
TTTAACACAGCTTCGCCTAG+AGG 0.626588 6:+93466068 None:intergenic
GCCTTGTAAAGTCTGCATTG+TGG 0.628195 6:+93464714 None:intergenic
TATTCTTCAGGAAATTGCTG+AGG 0.632039 6:-93465299 MsG0680034724.01.T01:CDS
CTAAGATGGATACATGAGCA+AGG 0.646695 6:-93464843 MsG0680034724.01.T01:CDS
TGAGGTGATACTAAATTCAG+GGG 0.660799 6:-93466228 MsG0680034724.01.T01:CDS
TAAGATGGATACATGAGCAA+GGG 0.664827 6:-93464842 MsG0680034724.01.T01:CDS
TCCTTGGAAGAGCTGTGGGA+TGG 0.668107 6:-93464657 MsG0680034724.01.T01:CDS
GGAAGCAAATAAACTCCATG+AGG 0.684740 6:-93466246 MsG0680034724.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACCTTGAAATATTTGAT+TGG - Chr6:93466119-93466138 MsG0680034724.01.T01:CDS 20.0%
!! AAATGATACAAAATTAGAGA+AGG + Chr6:93465013-93465032 None:intergenic 20.0%
!! AGCTTAAAATGTTAGATAAA+TGG - Chr6:93465718-93465737 MsG0680034724.01.T01:CDS 20.0%
!! AGTATTAACGTAATATTGAT+TGG + Chr6:93465348-93465367 None:intergenic 20.0%
!! TAATGACATGTAAAAATACT+CGG + Chr6:93465324-93465343 None:intergenic 20.0%
!!! AATTTTGTATCATTTTCTGT+TGG - Chr6:93465018-93465037 MsG0680034724.01.T01:intron 20.0%
!!! GAAATGTTTTTATCTGAAAA+TGG - Chr6:93466205-93466224 MsG0680034724.01.T01:CDS 20.0%
!!! GCTTATACATAAGTAATTTT+AGG - Chr6:93465946-93465965 MsG0680034724.01.T01:CDS 20.0%
!!! TATCTAACATTTTAAGCTTT+CGG + Chr6:93465716-93465735 None:intergenic 20.0%
!!! TTTTCATTACTTCTAAGTTA+TGG - Chr6:93464888-93464907 MsG0680034724.01.T01:intron 20.0%
! ATGGAAGATTGTTATAGATT+AGG - Chr6:93465181-93465200 MsG0680034724.01.T01:intron 25.0%
! GTTTCCAATCAAATATTTCA+AGG + Chr6:93466126-93466145 None:intergenic 25.0%
! TAATCTATAACAATCTTCCA+TGG + Chr6:93465182-93465201 None:intergenic 25.0%
!! ATTTTCTGTTGGAATTGTTT+AGG - Chr6:93465029-93465048 MsG0680034724.01.T01:intron 25.0%
!!! TTATTTTGTCCAATTCTTCT+TGG + Chr6:93466153-93466172 None:intergenic 25.0%
AGATTGAAAGAAGATGTTGA+AGG - Chr6:93465100-93465119 MsG0680034724.01.T01:intron 30.0%
ATGAGGTGATACTAAATTCA+GGG - Chr6:93464666-93464685 MsG0680034724.01.T01:CDS 30.0%
ATTTCATCTCTATGCAAGAA+TGG + Chr6:93465405-93465424 None:intergenic 30.0%
GAAACTAAACCAAGAAGAAT+TGG - Chr6:93466141-93466160 MsG0680034724.01.T01:CDS 30.0%
TCTACGAACATAAATACTTG+AGG - Chr6:93465768-93465787 MsG0680034724.01.T01:CDS 30.0%
TTTGATACAGCTTCTATCTA+TGG - Chr6:93464794-93464813 MsG0680034724.01.T01:CDS 30.0%
! CATGTCGATTATTTCGATTT+AGG - Chr6:93465440-93465459 MsG0680034724.01.T01:intron 30.0%
! CATGTTCCTTTTATGTCAAA+GGG + Chr6:93465154-93465173 None:intergenic 30.0%
! TGAAAAGCTTTAACAAAGAG+AGG - Chr6:93466089-93466108 MsG0680034724.01.T01:CDS 30.0%
!! CTCTCGAACTTTTTCTTTTA+AGG - Chr6:93464976-93464995 MsG0680034724.01.T01:intron 30.0%
!! GTGTTAAAAGCTTTAGAGAT+CGG - Chr6:93464842-93464861 MsG0680034724.01.T01:CDS 30.0%
!!! TTTCATCGCGATTTTTTATG+AGG + Chr6:93464868-93464887 None:intergenic 30.0%
AAATGGACCTTACAAATCCT+TGG - Chr6:93466222-93466241 MsG0680034724.01.T01:CDS 35.0%
AATAATCGACATGCAACCAA+TGG + Chr6:93465433-93465452 None:intergenic 35.0%
AATACTTTGTATGCTCCCAA+TGG + Chr6:93465546-93465565 None:intergenic 35.0%
AATGTCTGTAACCAATGTCA+AGG + Chr6:93464775-93464794 None:intergenic 35.0%
ACATCTTCTTTCAATCTCAC+TGG + Chr6:93465097-93465116 None:intergenic 35.0%
AGAGATGAAATTCACTCCAT+TGG - Chr6:93465414-93465433 MsG0680034724.01.T01:CDS 35.0%
AGGTAGAAATGAATCCATCA+TGG - Chr6:93465460-93465479 MsG0680034724.01.T01:intron 35.0%
ATGTCTGTAACCAATGTCAA+GGG + Chr6:93464774-93464793 None:intergenic 35.0%
ATTGGAAACAGCTAATGACA+TGG - Chr6:93465818-93465837 MsG0680034724.01.T01:CDS 35.0%
CATGAGGTGATACTAAATTC+AGG - Chr6:93464665-93464684 MsG0680034724.01.T01:CDS 35.0%
CCTTTGACATAAAAGGAACA+TGG - Chr6:93465152-93465171 MsG0680034724.01.T01:intron 35.0%
CTGAATTTAGTATCACCTCA+TGG + Chr6:93464667-93464686 None:intergenic 35.0%
CTGCACTAAGAAATCTAAAG+AGG + Chr6:93465744-93465763 None:intergenic 35.0%
GTGATTCCCTTTGACATAAA+AGG - Chr6:93465145-93465164 MsG0680034724.01.T01:intron 35.0%
TAAGATGGATACATGAGCAA+GGG - Chr6:93466053-93466072 MsG0680034724.01.T01:CDS 35.0%
TATGGAGAATCCTATTCTTC+AGG - Chr6:93465584-93465603 MsG0680034724.01.T01:intron 35.0%
TATTCTTCAGGAAATTGCTG+AGG - Chr6:93465596-93465615 MsG0680034724.01.T01:intron 35.0%
TCAGCAATTTCCTGAAGAAT+AGG + Chr6:93465597-93465616 None:intergenic 35.0%
TCTTATACCTGATTAACTGC+CGG + Chr6:93465283-93465302 None:intergenic 35.0%
TGAGGTGATACTAAATTCAG+GGG - Chr6:93464667-93464686 MsG0680034724.01.T01:CDS 35.0%
TGGAATTGTTTAGGAATCTG+AGG - Chr6:93465038-93465057 MsG0680034724.01.T01:intron 35.0%
TTAGGCTTAGCCAAATCTAT+CGG - Chr6:93465199-93465218 MsG0680034724.01.T01:intron 35.0%
TTATGACTTATGAGAGCTCA+TGG - Chr6:93465795-93465814 MsG0680034724.01.T01:CDS 35.0%
! ATTGTTTAGGAATCTGAGGT+TGG - Chr6:93465042-93465061 MsG0680034724.01.T01:intron 35.0%
! CCATGTTCCTTTTATGTCAA+AGG + Chr6:93465155-93465174 None:intergenic 35.0%
! GGAAAATGCAACCATTTTAC+CGG - Chr6:93465261-93465280 MsG0680034724.01.T01:intron 35.0%
! TAGAAATAAGAGTGTAGCAC+AGG - Chr6:93465620-93465639 MsG0680034724.01.T01:intron 35.0%
! TGAAGCTCTCACTTCAATTT+TGG - Chr6:93464742-93464761 MsG0680034724.01.T01:CDS 35.0%
!! GGAGCATACAAAGTATTTTG+GGG - Chr6:93465549-93465568 MsG0680034724.01.T01:intron 35.0%
!! GGGAGCATACAAAGTATTTT+GGG - Chr6:93465548-93465567 MsG0680034724.01.T01:intron 35.0%
!! TGGGAGCATACAAAGTATTT+TGG - Chr6:93465547-93465566 MsG0680034724.01.T01:intron 35.0%
AAAAGGAACATGGAAAGCCA+TGG - Chr6:93465162-93465181 MsG0680034724.01.T01:intron 40.0%
AAACGACAGTGAAGAGCTTA+CGG + Chr6:93465868-93465887 None:intergenic 40.0%
AAGATGCCAATAATAGGCCT+AGG - Chr6:93464692-93464711 MsG0680034724.01.T01:CDS 40.0%
AAGGAATTCATGTGTGTGCA+TGG - Chr6:93465517-93465536 MsG0680034724.01.T01:intron 40.0%
ACTTATGAGAGCTCATGGAT+TGG - Chr6:93465800-93465819 MsG0680034724.01.T01:CDS 40.0%
AGAGAACAATGCTTGCTTGA+GGG + Chr6:93464960-93464979 None:intergenic 40.0%
AGAGCTTCATTTGATGGAAG+AGG + Chr6:93464731-93464750 None:intergenic 40.0%
AGCTCTTCCAAGGATTTGTA+AGG + Chr6:93466232-93466251 None:intergenic 40.0%
ATGGCAGCAAGGAAAACTTA+GGG - Chr6:93465479-93465498 MsG0680034724.01.T01:intron 40.0%
CAAAAAGCTTTCCGTACTCT+TGG - Chr6:93465240-93465259 MsG0680034724.01.T01:intron 40.0%
CTAAGATGGATACATGAGCA+AGG - Chr6:93466052-93466071 MsG0680034724.01.T01:CDS 40.0%
CTGATTAACTGCCGGTAAAA+TGG + Chr6:93465275-93465294 None:intergenic 40.0%
GAAAACTTAGGGAATTCTGC+AGG - Chr6:93465490-93465509 MsG0680034724.01.T01:intron 40.0%
GAAGTGAGAGCTTCATTTGA+TGG + Chr6:93464737-93464756 None:intergenic 40.0%
GGAAGCAAATAAACTCCATG+AGG - Chr6:93464649-93464668 MsG0680034724.01.T01:CDS 40.0%
GGGGAAAAGATGCCAATAAT+AGG - Chr6:93464686-93464705 MsG0680034724.01.T01:CDS 40.0%
GTTGCTAACACCGATAGATT+TGG + Chr6:93465212-93465231 None:intergenic 40.0%
TCATCATGACCTTGTTCTCA+AGG - Chr6:93464922-93464941 MsG0680034724.01.T01:intron 40.0%
TCCACAATGCAGACTTTACA+AGG - Chr6:93466180-93466199 MsG0680034724.01.T01:CDS 40.0%
TCTTGCAGATAGCACTAAGA+TGG - Chr6:93466038-93466057 MsG0680034724.01.T01:CDS 40.0%
TGGATCTCTACTTGATTCAC+TGG - Chr6:93465071-93465090 MsG0680034724.01.T01:intron 40.0%
! CATTTTACCGGCAGTTAATC+AGG - Chr6:93465273-93465292 MsG0680034724.01.T01:intron 40.0%
! GGTTGCATTTTCCAAGAGTA+CGG + Chr6:93465254-93465273 None:intergenic 40.0%
! GTTGAAGGCTTTAACTTCAC+AGG - Chr6:93465115-93465134 MsG0680034724.01.T01:intron 40.0%
! TTGGGGTTCTAATGCTGTTA+TGG - Chr6:93465566-93465585 MsG0680034724.01.T01:intron 40.0%
!! TCTATCGGTGTTAGCAACTT+TGG - Chr6:93465214-93465233 MsG0680034724.01.T01:intron 40.0%
!! TTTTGAGAGCCTTGAGAACA+AGG + Chr6:93464934-93464953 None:intergenic 40.0%
ACAAATCCTTGGAAGAGCTG+TGG - Chr6:93466233-93466252 MsG0680034724.01.T01:CDS 45.0%
AGGGAATTCTGCAGGAACAA+AGG - Chr6:93465498-93465517 MsG0680034724.01.T01:intron 45.0%
ATGAATCCATCATGGCAGCA+AGG - Chr6:93465468-93465487 MsG0680034724.01.T01:intron 45.0%
CAAATCCTTGGAAGAGCTGT+GGG - Chr6:93466234-93466253 MsG0680034724.01.T01:CDS 45.0%
CATGGCAGCAAGGAAAACTT+AGG - Chr6:93465478-93465497 MsG0680034724.01.T01:intron 45.0%
GAGAGAACAATGCTTGCTTG+AGG + Chr6:93464961-93464980 None:intergenic 45.0%
GCAGTTCCTAGGCCTATTAT+TGG + Chr6:93464701-93464720 None:intergenic 45.0%
GCCTTGTAAAGTCTGCATTG+TGG + Chr6:93466184-93466203 None:intergenic 45.0%
TTTAACACAGCTTCGCCTAG+AGG + Chr6:93464830-93464849 None:intergenic 45.0%
! AGGCTTTAACTTCACAGGAG+AGG - Chr6:93465120-93465139 MsG0680034724.01.T01:intron 45.0%
! AGTTTTCCTTGCTGCCATGA+TGG + Chr6:93465477-93465496 None:intergenic 45.0%
! GAATCTGAGGTTGGAGTATG+TGG - Chr6:93465051-93465070 MsG0680034724.01.T01:intron 45.0%
! GCTTTCGGAACAGTTTGTTC+TGG + Chr6:93465701-93465720 None:intergenic 45.0%
! TATGGTACCGAAGAACCTCT+AGG - Chr6:93464812-93464831 MsG0680034724.01.T01:CDS 45.0%
! TTGGTTGATGCCCTTGACAT+TGG - Chr6:93464761-93464780 MsG0680034724.01.T01:CDS 45.0%
AGCTTCGCCTAGAGGTTCTT+CGG + Chr6:93464822-93464841 None:intergenic 50.0%
GAACAATGCTTGCTTGAGGG+TGG + Chr6:93464957-93464976 None:intergenic 50.0%
GAGGAGTTGTAGCAGTTCCT+AGG + Chr6:93464712-93464731 None:intergenic 50.0%
GTGTGTGCATGGTCACCATT+GGG - Chr6:93465528-93465547 MsG0680034724.01.T01:intron 50.0%
TGTGTGTGCATGGTCACCAT+TGG - Chr6:93465527-93465546 MsG0680034724.01.T01:intron 50.0%
ACCATCCCACAGCTCTTCCA+AGG + Chr6:93466242-93466261 None:intergenic 55.0%
TCCTTGGAAGAGCTGTGGGA+TGG - Chr6:93466238-93466257 MsG0680034724.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr6 gene 93464647 93466270 93464647 ID=MsG0680034724.01;Name=MsG0680034724.01
Chr6 mRNA 93464647 93466270 93464647 ID=MsG0680034724.01.T01;Parent=MsG0680034724.01;Name=MsG0680034724.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|3|0|350
Chr6 exon 93465623 93466270 93465623 ID=MsG0680034724.01.T01:exon:13049;Parent=MsG0680034724.01.T01
Chr6 exon 93465276 93465455 93465276 ID=MsG0680034724.01.T01:exon:13048;Parent=MsG0680034724.01.T01
Chr6 exon 93464647 93464871 93464647 ID=MsG0680034724.01.T01:exon:13047;Parent=MsG0680034724.01.T01
Chr6 CDS 93465623 93466270 93465623 ID=MsG0680034724.01.T01:cds;Parent=MsG0680034724.01.T01
Chr6 CDS 93465276 93465455 93465276 ID=MsG0680034724.01.T01:cds;Parent=MsG0680034724.01.T01
Chr6 CDS 93464647 93464871 93464647 ID=MsG0680034724.01.T01:cds;Parent=MsG0680034724.01.T01
Gene Sequence

>MsG0680034724.01.T01

ATGGAAGCAAATAAACTCCATGAGGTGATACTAAATTCAGGGGAAAAGATGCCAATAATAGGCCTAGGAACTGCTACAACTCCTCTTCCATCAAATGAAGCTCTCACTTCAATTTTGGTTGATGCCCTTGACATTGGTTACAGACATTTTGATACAGCTTCTATCTATGGTACCGAAGAACCTCTAGGCGAAGCTGTGTTAAAAGCTTTAGAGATCGGCCTCATAAAAAATCGCGATGAAATTTTCATTACTTCTAAGTTATGGTGCACTGATGCTCATCATGACCTTGTTCTCAAGGCTCTCAAAACCACCCTCAAGCAAGCATTGTTCTCTCGAACTTTTTCTTTTAAGGTTGTATTTATTCCTTCTCTAATTTTGTATCATTTTCTGTTGGAATTGTTTAGGAATCTGAGGTTGGAGTATGTGGATCTCTACTTGATTCACTGGCCAGTGAGATTGAAAGAAGATGTTGAAGGCTTTAACTTCACAGGAGAGGATGTGATTCCCTTTGACATAAAAGGAACATGGAAAGCCATGGAAGATTGTTATAGATTAGGCTTAGCCAAATCTATCGGTGTTAGCAACTTTGGTATCAAAAAGCTTTCCGTACTCTTGGAAAATGCAACCATTTTACCGGCAGTTAATCAGGTAGAAATGAATCCATCATGGCAGCAAGGAAAACTTAGGGAATTCTGCAGGAACAAAGGAATTCATGTGTGTGCATGGTCACCATTGGGAGCATACAAAGTATTTTGGGGTTCTAATGCTGTTATGGAGAATCCTATTCTTCAGGAAATTGCTGAGGCTAGAAATAAGAGTGTAGCACAGATAGCACTAAGATGGATACATGAGCAAGGGACAAGTGTAATTGTGAAAAGCTTTAACAAAGAGAGGATGAAACAAAACCTTGAAATATTTGATTGGAAACTAAACCAAGAAGAATTGGACAAAATAAATAAGATTCCACAATGCAGACTTTACAAGGCTGAAATGTTTTTATCTGAAAATGGACCTTACAAATCCTTGGAAGAGCTGTGGGATGGTGACCCTTGA

Protein sequence

>MsG0680034724.01.T01

MEANKLHEVILNSGEKMPIIGLGTATTPLPSNEALTSILVDALDIGYRHFDTASIYGTEEPLGEAVLKALEIGLIKNRDEIFITSKLWCTDAHHDLVLKALKTTLKQALFSRTFSFKVVFIPSLILYHFLLELFRNLRLEYVDLYLIHWPVRLKEDVEGFNFTGEDVIPFDIKGTWKAMEDCYRLGLAKSIGVSNFGIKKLSVLLENATILPAVNQVEMNPSWQQGKLREFCRNKGIHVCAWSPLGAYKVFWGSNAVMENPILQEIAEARNKSVAQIALRWIHEQGTSVIVKSFNKERMKQNLEIFDWKLNQEELDKINKIPQCRLYKAEMFLSENGPYKSLEELWDGDP*