AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0680034729.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034729.01.T01 MTR_4g072350 82.243 321 57 0 1 321 1 321 0.0 552
MsG0680034729.01.T01 MTR_4g072360 78.438 320 69 0 1 320 1 320 0.0 530
MsG0680034729.01.T01 MTR_4g072320 77.500 320 66 2 1 320 1 314 0.0 517
MsG0680034729.01.T01 MTR_6g073110 59.434 318 129 0 1 318 1 318 7.10e-146 414
MsG0680034729.01.T01 MTR_0374s0050 51.703 323 145 2 1 320 1 315 1.95e-114 333
MsG0680034729.01.T01 MTR_3g083130 50.305 328 138 8 1 318 1 313 3.76e-104 308
MsG0680034729.01.T01 MTR_5g097900 51.634 306 132 6 16 318 19 311 5.33e-94 281
MsG0680034729.01.T01 MTR_5g097910 53.521 284 125 4 16 297 19 297 1.30e-93 281
MsG0680034729.01.T01 MTR_5g097940 53.521 284 125 4 16 297 19 297 1.30e-93 281
MsG0680034729.01.T01 MTR_4g036845 46.855 318 162 6 5 320 2 314 5.89e-93 279
MsG0680034729.01.T01 MTR_8g070095 45.570 316 159 6 11 320 10 318 7.35e-88 266
MsG0680034729.01.T01 MTR_6g072650 81.333 150 6 1 172 321 10 137 5.14e-84 249
MsG0680034729.01.T01 MTR_8g070115 43.730 311 168 4 11 320 10 314 2.08e-82 252
MsG0680034729.01.T01 MTR_4g021350 44.688 320 166 6 3 320 2 312 9.81e-81 248
MsG0680034729.01.T01 MTR_7g063580 44.051 311 166 5 11 320 50 353 1.24e-79 246
MsG0680034729.01.T01 MTR_4g021410 44.337 309 154 6 11 318 11 302 3.22e-73 228
MsG0680034729.01.T01 MTR_4g021350 45.392 293 150 5 3 294 2 285 1.27e-72 226
MsG0680034729.01.T01 MTR_4g021450 42.991 321 165 6 1 320 1 304 3.56e-71 223
MsG0680034729.01.T01 MTR_7g070500 40.514 311 173 6 11 318 17 318 3.15e-70 221
MsG0680034729.01.T01 MTR_4g021410 45.487 277 136 5 43 318 3 265 1.15e-67 213
MsG0680034729.01.T01 MTR_7g070500 40.484 289 163 4 11 299 17 296 3.01e-64 205
MsG0680034729.01.T01 MTR_4g072060 40.541 296 160 7 9 294 3 292 4.91e-59 192
MsG0680034729.01.T01 MTR_4g021410 45.607 239 116 4 81 318 1 226 4.90e-55 179
MsG0680034729.01.T01 MTR_4g021450 44.813 241 119 4 81 320 1 228 3.80e-53 174
MsG0680034729.01.T01 MTR_4g021450 45.556 180 93 2 142 320 10 185 3.08e-48 160
MsG0680034729.01.T01 MTR_6g072710 62.832 113 42 0 190 302 1 113 6.80e-48 157
MsG0680034729.01.T01 MTR_6g072705 91.667 48 4 0 105 152 38 85 9.98e-27 101
MsG0680034729.01.T01 MTR_3g449790 24.825 286 157 8 42 292 83 345 2.16e-12 67.4
MsG0680034729.01.T01 MTR_3g449790 24.476 286 164 8 42 292 83 351 1.43e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0680034729.01.T01 AT1G59960 50.462 325 156 2 1 320 1 325 5.70e-121 351
MsG0680034729.01.T01 AT1G59950 52.131 305 145 1 17 320 15 319 3.61e-111 325
MsG0680034729.01.T01 AT2G37790 48.232 311 153 4 11 320 10 313 2.75e-97 290
MsG0680034729.01.T01 AT2G37770 48.397 312 152 5 11 320 10 314 8.68e-95 284
MsG0680034729.01.T01 AT3G53880 45.659 311 162 4 11 320 10 314 1.86e-89 270
MsG0680034729.01.T01 AT5G62420 45.687 313 162 7 11 320 8 315 4.74e-89 269
MsG0680034729.01.T01 AT2G37760 45.338 311 159 4 11 320 10 310 1.16e-86 263
MsG0680034729.01.T01 AT2G37760 45.338 311 159 4 11 320 10 310 1.16e-86 263
MsG0680034729.01.T01 AT2G37760 45.455 286 146 3 11 296 10 285 4.14e-80 245
MsG0680034729.01.T01 AT2G37760 44.948 287 148 3 11 297 10 286 1.15e-79 244
MsG0680034729.01.T01 AT2G37760 44.948 287 148 3 11 297 10 286 1.15e-79 244
MsG0680034729.01.T01 AT5G01670 40.938 320 177 7 2 318 9 319 1.50e-79 245
MsG0680034729.01.T01 AT3G53880 45.070 284 150 3 11 294 10 287 9.02e-79 243
MsG0680034729.01.T01 AT5G01670 37.752 347 177 8 2 318 9 346 1.63e-73 231
MsG0680034729.01.T01 AT2G37760 45.385 260 138 3 62 320 8 264 7.66e-71 221
MsG0680034729.01.T01 AT2G37760 45.385 260 138 3 62 320 8 264 7.66e-71 221
MsG0680034729.01.T01 AT2G21260 39.057 297 165 7 8 294 2 292 3.08e-65 208
MsG0680034729.01.T01 AT2G21250 38.047 297 168 7 8 294 2 292 1.38e-63 204
MsG0680034729.01.T01 AT2G37770 51.741 201 89 4 11 210 10 203 1.16e-61 198
MsG0680034729.01.T01 AT2G21250 39.241 237 128 7 8 234 2 232 2.47e-47 159
MsG0680034729.01.T01 AT2G21260 36.406 217 126 5 86 292 8 222 3.01e-40 141
MsG0680034729.01.T01 AT1G06690 25.795 283 156 9 46 292 98 362 1.27e-13 71.2
MsG0680034729.01.T01 AT1G60750 28.324 346 186 18 2 314 4 320 3.55e-12 66.6
MsG0680034729.01.T01 AT5G53580 23.571 280 161 9 42 285 80 342 9.25e-12 65.9

Find 81 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGGAGCATACAAAGTATTT+TGG 0.154726 6:-93531288 MsG0680034729.01.T01:CDS
TGAAGCTCTCACTTCAATTT+TGG 0.164436 6:-93532054 MsG0680034729.01.T01:CDS
TCCACAATGCAGACTTTATA+AGG 0.257806 6:-93530688 MsG0680034729.01.T01:CDS
TTTGATACAGCTTCTATCTA+TGG 0.288397 6:-93532002 MsG0680034729.01.T01:CDS
TCGAATTGTTTAGGAATCTA+AGG 0.315799 6:-93531760 MsG0680034729.01.T01:intron
GATGGAGAACTCTATTCTTC+TGG 0.340422 6:-93531251 MsG0680034729.01.T01:CDS
GAAACTGAACCAAGAAGAAT+TGG 0.348726 6:-93530727 MsG0680034729.01.T01:CDS
CATTTCGCCTGCAGTTAATC+AGG 0.352692 6:-93531525 MsG0680034729.01.T01:intron
GTTACTAACACCAATAGATT+TGG 0.354709 6:+93531589 None:intergenic
CCATGAGGTGATACTAAATT+CGG 0.362220 6:-93532132 MsG0680034729.01.T01:CDS
CATGTTCCTTTGATATCAAA+TGG 0.366654 6:+93531647 None:intergenic
TTCTGCAACGAATGAGATAA+AGG 0.373223 6:+93530508 None:intergenic
GGGGAAAAGATGCCAGTAAT+AGG 0.379501 6:-93532110 MsG0680034729.01.T01:CDS
AAAACCTTGAAATATTTGAT+TGG 0.391571 6:-93530749 MsG0680034729.01.T01:CDS
GAAGTGAGAGCTTCATTTGA+TGG 0.392979 6:+93532062 None:intergenic
CTGATTAACTGCAGGCGAAA+TGG 0.409696 6:+93531526 None:intergenic
TTAGGCTTAGCCAAATCTAT+TGG 0.410561 6:-93531599 MsG0680034729.01.T01:CDS
AGTTTCCCTTGTTGCCATGA+TGG 0.413836 6:+93531361 None:intergenic
ATGGAAGACTGTTACAGATT+AGG 0.430151 6:-93531617 MsG0680034729.01.T01:CDS
TCAACAAATTACATTGTTCA+AGG 0.430793 6:+93530252 None:intergenic
GTTTCCAATCAAATATTTCA+AGG 0.435069 6:+93530745 None:intergenic
GCAGTTCCTAGGCCTATTAC+TGG 0.435239 6:+93532098 None:intergenic
TCTTGCAGATAGCACTAAGA+TGG 0.451601 6:-93530830 MsG0680034729.01.T01:intron
TCCTCTGCTTGACTAAATCT+AGG 0.457745 6:+93530290 None:intergenic
AAATGGACCTTACAAATCCT+TGG 0.461855 6:-93530646 MsG0680034729.01.T01:CDS
TATTCTTCTGGAAATTGCTC+AGG 0.470924 6:-93531239 MsG0680034729.01.T01:CDS
GAGGAGATGTAGCAGTTCCT+AGG 0.470932 6:+93532087 None:intergenic
CAAAGGAACATGGGAAGCTA+TGG 0.471811 6:-93531636 MsG0680034729.01.T01:CDS
TGGATCTCTACTTGATTCAC+TGG 0.472213 6:-93531727 MsG0680034729.01.T01:CDS
AGCTCTTCCAAGGATTTGTA+AGG 0.476136 6:+93530639 None:intergenic
GTTGAAGGCTTTAACTTCAC+AGG 0.478558 6:-93531683 MsG0680034729.01.T01:CDS
AGAGCTTCATTTGATGGAAG+AGG 0.479484 6:+93532068 None:intergenic
TAGGAAGAAGAGTGTAGCTC+AGG 0.480111 6:-93531215 MsG0680034729.01.T01:intron
ACATCTTCTTTCAATCTCAC+TGG 0.482395 6:+93531704 None:intergenic
CATGAGGTGATACTAAATTC+GGG 0.484916 6:-93532131 MsG0680034729.01.T01:CDS
CATGGCAACAAGGGAAACTC+AGG 0.493453 6:-93531357 MsG0680034729.01.T01:CDS
GAATCTAAGGTTGGAGTATG+TGG 0.495354 6:-93531747 MsG0680034729.01.T01:CDS
TGTGTGTGCATGGTCACCAT+TGG 0.497595 6:-93531308 MsG0680034729.01.T01:CDS
ATTGTTTAGGAATCTAAGGT+TGG 0.498482 6:-93531756 MsG0680034729.01.T01:intron
CATTTGATATCAAAGGAACA+TGG 0.501156 6:-93531646 MsG0680034729.01.T01:CDS
GTGTGTGCATGGTCACCATT+GGG 0.511118 6:-93531307 MsG0680034729.01.T01:CDS
CTTTCACGCTGTGGATGCTA+TGG 0.515324 6:-93530405 MsG0680034729.01.T01:three_prime_UTR
GTGATTCCATTTGATATCAA+AGG 0.515819 6:-93531653 MsG0680034729.01.T01:CDS
GGTTGCATTGTCCAAGAGTA+CGG 0.517514 6:+93531547 None:intergenic
AGGGAATTCTGCATGAAGAA+AGG 0.520886 6:-93531337 MsG0680034729.01.T01:CDS
CAAATCCTTGGAAGAGCTGT+GGG 0.525762 6:-93530634 MsG0680034729.01.T01:CDS
AAGCATTGCAATTATATCAA+AGG 0.539099 6:+93530226 None:intergenic
TCTTATACCTGATTAACTGC+AGG 0.543967 6:+93531518 None:intergenic
AGATTGAAAGAAGATGTTGA+AGG 0.547100 6:-93531698 MsG0680034729.01.T01:CDS
AAGATGCCAGTAATAGGCCT+AGG 0.550717 6:-93532104 MsG0680034729.01.T01:CDS
TTGGGGTTCTAATGCTGTGA+TGG 0.554067 6:-93531269 MsG0680034729.01.T01:CDS
TCCTAGATTTAGTCAAGCAG+AGG 0.557738 6:-93530291 MsG0680034729.01.T01:three_prime_UTR
GTGTCAAAAGCTTTAGAGAT+CGG 0.568756 6:-93531954 MsG0680034729.01.T01:CDS
AACAAGGTCATGGTGAGCAT+CGG 0.569974 6:+93531881 None:intergenic
CCGAATTTAGTATCACCTCA+TGG 0.575461 6:+93532132 None:intergenic
TTGGTTGATGCCATTCACAT+TGG 0.577773 6:-93532035 MsG0680034729.01.T01:CDS
ACCATCCCACAGCTCTTCCA+AGG 0.580081 6:+93530629 None:intergenic
ATGAATCCATCATGGCAACA+AGG 0.583038 6:-93531367 MsG0680034729.01.T01:CDS
ATGTCTGTAGCCAATGTGAA+TGG 0.585278 6:+93532025 None:intergenic
TTCTGGAAATTGCTCAGGCT+AGG 0.591523 6:-93531234 MsG0680034729.01.T01:CDS
AGGTAGAAATGAATCCATCA+TGG 0.594785 6:-93531375 MsG0680034729.01.T01:CDS
ACAAATCCTTGGAAGAGCTG+TGG 0.595019 6:-93530635 MsG0680034729.01.T01:CDS
TGAAAAGCTTCAACAAAGAG+AGG 0.595864 6:-93530779 MsG0680034729.01.T01:CDS
TTTGACACAGCTTGGCCTAG+AGG 0.596039 6:+93531969 None:intergenic
TGAATCCATCATGGCAACAA+GGG 0.596651 6:-93531366 MsG0680034729.01.T01:CDS
TCGGAAACTCTTTCACGCTG+TGG 0.600567 6:-93530414 MsG0680034729.01.T01:three_prime_UTR
ATTTGATATCAAAGGAACAT+GGG 0.604512 6:-93531645 MsG0680034729.01.T01:CDS
GCCTTATAAAGTCTGCATTG+TGG 0.609832 6:+93530687 None:intergenic
AGGCTTTAACTTCACAGGTG+AGG 0.611497 6:-93531678 MsG0680034729.01.T01:CDS
TATGGTACTGAAGAACCTCT+AGG 0.616094 6:-93531984 MsG0680034729.01.T01:CDS
AATACTTTGTATGCTCCCAA+TGG 0.618795 6:+93531292 None:intergenic
GAACAATGCTTACTTGAGGG+TGG 0.623073 6:+93531842 None:intergenic
AAGGAATTCATGTGTGTGCA+TGG 0.624563 6:-93531318 MsG0680034729.01.T01:CDS
GAGCATTGAGAACAAGGTCA+TGG 0.634564 6:+93531871 None:intergenic
ACTCATAATCAAAAGAGACA+TGG 0.647321 6:+93530323 None:intergenic
ATGAGGTGATACTAAATTCG+GGG 0.654424 6:-93532130 MsG0680034729.01.T01:CDS
TCCTTGGAAGAGCTGTGGGA+TGG 0.668107 6:-93530630 MsG0680034729.01.T01:CDS
ATGGCAACAAGGGAAACTCA+GGG 0.675053 6:-93531356 MsG0680034729.01.T01:CDS
TGAGGTGATACTAAATTCGG+GGG 0.676837 6:-93532129 MsG0680034729.01.T01:CDS
CTAAGATGGATACATGAGCA+AGG 0.686586 6:-93530816 MsG0680034729.01.T01:CDS
GGAAGCAACTAAACTCCATG+AGG 0.702832 6:-93532147 MsG0680034729.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTACATATAAAAGATT+CGG - Chr6:93531866-93531885 MsG0680034729.01.T01:CDS 10.0%
!! AAAAATAACAAAATTAGAGA+AGG + Chr6:93530516-93530535 None:intergenic 15.0%
!! AAAACCTTGAAATATTTGAT+TGG - Chr6:93531550-93531569 MsG0680034729.01.T01:CDS 20.0%
!! ACCTTAAAATGTTAGATAAA+TGG - Chr6:93531182-93531201 MsG0680034729.01.T01:intron 20.0%
!! TGTTATAAAATTCACTCAAT+TGG - Chr6:93530878-93530897 MsG0680034729.01.T01:intron 20.0%
!!! ATTTTTTGTTCGAATTGTTT+AGG - Chr6:93530530-93530549 MsG0680034729.01.T01:three_prime_UTR 20.0%
!!! GAAATGTTTTTATCTGAAAA+TGG - Chr6:93531636-93531655 MsG0680034729.01.T01:CDS 20.0%
!!! GCTTATACATAAGTAATTTT+AGG - Chr6:93531412-93531431 MsG0680034729.01.T01:intron 20.0%
! AGCATTAACGTAATATTGAT+TGG + Chr6:93530849-93530868 None:intergenic 25.0%
! ATTTGATATCAAAGGAACAT+GGG - Chr6:93530654-93530673 MsG0680034729.01.T01:CDS 25.0%
! GTTTCCAATCAAATATTTCA+AGG + Chr6:93531557-93531576 None:intergenic 25.0%
! TCAACAAATTACATTGTTCA+AGG + Chr6:93532050-93532069 None:intergenic 25.0%
!! AAGCATTGCAATTATATCAA+AGG + Chr6:93532076-93532095 None:intergenic 25.0%
!! GATTTTGTGCAAGTTAAAAA+AGG + Chr6:93531760-93531779 None:intergenic 25.0%
!! GCCATTTATCTAACATTTTA+AGG + Chr6:93531186-93531205 None:intergenic 25.0%
!! TTTTCATCACTTCTAAGTTA+TGG - Chr6:93530391-93530410 MsG0680034729.01.T01:three_prime_UTR 25.0%
AAACAACAGTGAAGATCTTA+CGG + Chr6:93531334-93531353 None:intergenic 30.0%
ACTCATAATCAAAAGAGACA+TGG + Chr6:93531979-93531998 None:intergenic 30.0%
AGATTGAAAGAAGATGTTGA+AGG - Chr6:93530601-93530620 MsG0680034729.01.T01:exon 30.0%
ATTGGAAACAGTTAATGACA+TGG - Chr6:93531284-93531303 MsG0680034729.01.T01:CDS 30.0%
CATGTTCCTTTGATATCAAA+TGG + Chr6:93530655-93530674 None:intergenic 30.0%
CATTTGATATCAAAGGAACA+TGG - Chr6:93530653-93530672 MsG0680034729.01.T01:CDS 30.0%
GTGATTCCATTTGATATCAA+AGG - Chr6:93530646-93530665 MsG0680034729.01.T01:CDS 30.0%
GTTACTAACACCAATAGATT+TGG + Chr6:93530713-93530732 None:intergenic 30.0%
TACGAACATAAATACTTGTG+AGG - Chr6:93531234-93531253 MsG0680034729.01.T01:CDS 30.0%
TCGAATTGTTTAGGAATCTA+AGG - Chr6:93530539-93530558 MsG0680034729.01.T01:three_prime_UTR 30.0%
TTTGATACAGCTTCTATCTA+TGG - Chr6:93530297-93530316 MsG0680034729.01.T01:three_prime_UTR 30.0%
! ATTGTTTAGGAATCTAAGGT+TGG - Chr6:93530543-93530562 MsG0680034729.01.T01:three_prime_UTR 30.0%
! CAATACAAGATTTTGCTCAA+GGG + Chr6:93531698-93531717 None:intergenic 30.0%
! CATGTTGATTATCTCGATTT+AGG - Chr6:93530904-93530923 MsG0680034729.01.T01:intron 30.0%
! TCAATACAAGATTTTGCTCA+AGG + Chr6:93531699-93531718 None:intergenic 30.0%
! TGATTTTGTCCAATTCTTCT+TGG + Chr6:93531584-93531603 None:intergenic 30.0%
!! CTGTGCAACTTTTTCTTTTA+AGG - Chr6:93530479-93530498 MsG0680034729.01.T01:three_prime_UTR 30.0%
!!! GGTTTTAGAACAGTTTGTTT+AGG + Chr6:93531165-93531184 None:intergenic 30.0%
AAATGGACCTTACAAATCCT+TGG - Chr6:93531653-93531672 MsG0680034729.01.T01:CDS 35.0%
AATACTTTGTATGCTCCCAA+TGG + Chr6:93531010-93531029 None:intergenic 35.0%
ACAGAACAATGCTTACTTGA+GGG + Chr6:93530463-93530482 None:intergenic 35.0%
ACATCTTCTTTCAATCTCAC+TGG + Chr6:93530598-93530617 None:intergenic 35.0%
AGGTAGAAATGAATCCATCA+TGG - Chr6:93530924-93530943 MsG0680034729.01.T01:intron 35.0%
ATGAGGTGATACTAAATTCG+GGG - Chr6:93530169-93530188 MsG0680034729.01.T01:three_prime_UTR 35.0%
ATGGAAGACTGTTACAGATT+AGG - Chr6:93530682-93530701 MsG0680034729.01.T01:CDS 35.0%
CATGAGGTGATACTAAATTC+GGG - Chr6:93530168-93530187 MsG0680034729.01.T01:three_prime_UTR 35.0%
CCATGAGGTGATACTAAATT+CGG - Chr6:93530167-93530186 MsG0680034729.01.T01:three_prime_UTR 35.0%
CTGCACTAAGAAATCTAAAG+AGG + Chr6:93531208-93531227 None:intergenic 35.0%
GAAACTGAACCAAGAAGAAT+TGG - Chr6:93531572-93531591 MsG0680034729.01.T01:CDS 35.0%
TCCACAATGCAGACTTTATA+AGG - Chr6:93531611-93531630 MsG0680034729.01.T01:CDS 35.0%
TCTTATACCTGATTAACTGC+AGG + Chr6:93530784-93530803 None:intergenic 35.0%
TGAAAAGCTTCAACAAAGAG+AGG - Chr6:93531520-93531539 MsG0680034729.01.T01:intron 35.0%
TTAGGCTTAGCCAAATCTAT+TGG - Chr6:93530700-93530719 MsG0680034729.01.T01:CDS 35.0%
TTATGACTTATGAGAGCTCA+TGG - Chr6:93531261-93531280 MsG0680034729.01.T01:CDS 35.0%
TTCTGCAACGAATGAGATAA+AGG + Chr6:93531794-93531813 None:intergenic 35.0%
! TATTCTTCTGGAAATTGCTC+AGG - Chr6:93531060-93531079 MsG0680034729.01.T01:intron 35.0%
! TGAAGCTCTCACTTCAATTT+TGG - Chr6:93530245-93530264 MsG0680034729.01.T01:three_prime_UTR 35.0%
!! GGAGCATACAAAGTATTTTG+GGG - Chr6:93531013-93531032 MsG0680034729.01.T01:intron 35.0%
!! GGGAGCATACAAAGTATTTT+GGG - Chr6:93531012-93531031 MsG0680034729.01.T01:intron 35.0%
!! GTGTCAAAAGCTTTAGAGAT+CGG - Chr6:93530345-93530364 MsG0680034729.01.T01:three_prime_UTR 35.0%
!! TGGGAGCATACAAAGTATTT+TGG - Chr6:93531011-93531030 MsG0680034729.01.T01:intron 35.0%
!!! CTTCATCGCGATTTTTTATG+AGG + Chr6:93530371-93530390 None:intergenic 35.0%
!!! TTTTGAGAGCATTGAGAACA+AGG + Chr6:93530437-93530456 None:intergenic 35.0%
AAGGAATTCATGTGTGTGCA+TGG - Chr6:93530981-93531000 MsG0680034729.01.T01:intron 40.0%
ACTTATGAGAGCTCATGGAT+TGG - Chr6:93531266-93531285 MsG0680034729.01.T01:CDS 40.0%
AGAGCTTCATTTGATGGAAG+AGG + Chr6:93530234-93530253 None:intergenic 40.0%
AGCTCTTCCAAGGATTTGTA+AGG + Chr6:93531663-93531682 None:intergenic 40.0%
AGGGAATTCTGCATGAAGAA+AGG - Chr6:93530962-93530981 MsG0680034729.01.T01:intron 40.0%
ATGAATCCATCATGGCAACA+AGG - Chr6:93530932-93530951 MsG0680034729.01.T01:intron 40.0%
ATGTCTGTAGCCAATGTGAA+TGG + Chr6:93530277-93530296 None:intergenic 40.0%
CAAAAAGCTTTCCGTACTCT+TGG - Chr6:93530741-93530760 MsG0680034729.01.T01:CDS 40.0%
CACAGAACAATGCTTACTTG+AGG + Chr6:93530464-93530483 None:intergenic 40.0%
CCGAATTTAGTATCACCTCA+TGG + Chr6:93530170-93530189 None:intergenic 40.0%
CTAAGATGGATACATGAGCA+AGG - Chr6:93531483-93531502 MsG0680034729.01.T01:intron 40.0%
GAAGTGAGAGCTTCATTTGA+TGG + Chr6:93530240-93530259 None:intergenic 40.0%
GATGGAGAACTCTATTCTTC+TGG - Chr6:93531048-93531067 MsG0680034729.01.T01:intron 40.0%
GCCTTATAAAGTCTGCATTG+TGG + Chr6:93531615-93531634 None:intergenic 40.0%
TCCTAGATTTAGTCAAGCAG+AGG - Chr6:93532008-93532027 MsG0680034729.01.T01:CDS 40.0%
TCCTCTGCTTGACTAAATCT+AGG + Chr6:93532012-93532031 None:intergenic 40.0%
TCTTGCAGATAGCACTAAGA+TGG - Chr6:93531469-93531488 MsG0680034729.01.T01:intron 40.0%
TGAATCCATCATGGCAACAA+GGG - Chr6:93530933-93530952 MsG0680034729.01.T01:intron 40.0%
TGAGGTGATACTAAATTCGG+GGG - Chr6:93530170-93530189 MsG0680034729.01.T01:three_prime_UTR 40.0%
TGGATCTCTACTTGATTCAC+TGG - Chr6:93530572-93530591 MsG0680034729.01.T01:three_prime_UTR 40.0%
! CTAAAGCTTTTGACACAGCT+TGG + Chr6:93530341-93530360 None:intergenic 40.0%
! GAATCTAAGGTTGGAGTATG+TGG - Chr6:93530552-93530571 MsG0680034729.01.T01:three_prime_UTR 40.0%
! GTTGAAGGCTTTAACTTCAC+AGG - Chr6:93530616-93530635 MsG0680034729.01.T01:exon 40.0%
! TATGGTACTGAAGAACCTCT+AGG - Chr6:93530315-93530334 MsG0680034729.01.T01:three_prime_UTR 40.0%
! TTGGTTGATGCCATTCACAT+TGG - Chr6:93530264-93530283 MsG0680034729.01.T01:three_prime_UTR 40.0%
AACAAGGTCATGGTGAGCAT+CGG + Chr6:93530421-93530440 None:intergenic 45.0%
AAGATGCCAGTAATAGGCCT+AGG - Chr6:93530195-93530214 MsG0680034729.01.T01:three_prime_UTR 45.0%
ACAAATCCTTGGAAGAGCTG+TGG - Chr6:93531664-93531683 MsG0680034729.01.T01:CDS 45.0%
AGTTTCCCTTGTTGCCATGA+TGG + Chr6:93530941-93530960 None:intergenic 45.0%
ATGGCAACAAGGGAAACTCA+GGG - Chr6:93530943-93530962 MsG0680034729.01.T01:intron 45.0%
CAAAGGAACATGGGAAGCTA+TGG - Chr6:93530663-93530682 MsG0680034729.01.T01:CDS 45.0%
CAAATCCTTGGAAGAGCTGT+GGG - Chr6:93531665-93531684 MsG0680034729.01.T01:CDS 45.0%
CATTTCGCCTGCAGTTAATC+AGG - Chr6:93530774-93530793 MsG0680034729.01.T01:CDS 45.0%
CTGATTAACTGCAGGCGAAA+TGG + Chr6:93530776-93530795 None:intergenic 45.0%
GAACAATGCTTACTTGAGGG+TGG + Chr6:93530460-93530479 None:intergenic 45.0%
GGAAGCAACTAAACTCCATG+AGG - Chr6:93530152-93530171 MsG0680034729.01.T01:three_prime_UTR 45.0%
GGGGAAAAGATGCCAGTAAT+AGG - Chr6:93530189-93530208 MsG0680034729.01.T01:three_prime_UTR 45.0%
GGTTGCATTGTCCAAGAGTA+CGG + Chr6:93530755-93530774 None:intergenic 45.0%
! AGGCTTTAACTTCACAGGTG+AGG - Chr6:93530621-93530640 MsG0680034729.01.T01:CDS 45.0%
! TAGGAAGAAGAGTGTAGCTC+AGG - Chr6:93531084-93531103 MsG0680034729.01.T01:intron 45.0%
! TTCTGGAAATTGCTCAGGCT+AGG - Chr6:93531065-93531084 MsG0680034729.01.T01:intron 45.0%
! TTGGGGTTCTAATGCTGTGA+TGG - Chr6:93531030-93531049 MsG0680034729.01.T01:intron 45.0%
!! GAGCATTGAGAACAAGGTCA+TGG + Chr6:93530431-93530450 None:intergenic 45.0%
CATGGCAACAAGGGAAACTC+AGG - Chr6:93530942-93530961 MsG0680034729.01.T01:intron 50.0%
CTTTCACGCTGTGGATGCTA+TGG - Chr6:93531894-93531913 MsG0680034729.01.T01:CDS 50.0%
GAGGAGATGTAGCAGTTCCT+AGG + Chr6:93530215-93530234 None:intergenic 50.0%
GCAGTTCCTAGGCCTATTAC+TGG + Chr6:93530204-93530223 None:intergenic 50.0%
GTGTGTGCATGGTCACCATT+GGG - Chr6:93530992-93531011 MsG0680034729.01.T01:intron 50.0%
TCGGAAACTCTTTCACGCTG+TGG - Chr6:93531885-93531904 MsG0680034729.01.T01:CDS 50.0%
TGTGTGTGCATGGTCACCAT+TGG - Chr6:93530991-93531010 MsG0680034729.01.T01:intron 50.0%
TTTGACACAGCTTGGCCTAG+AGG + Chr6:93530333-93530352 None:intergenic 50.0%
ACCATCCCACAGCTCTTCCA+AGG + Chr6:93531673-93531692 None:intergenic 55.0%
TCCTTGGAAGAGCTGTGGGA+TGG - Chr6:93531669-93531688 MsG0680034729.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr6 gene 93530150 93532171 93530150 ID=MsG0680034729.01;Name=MsG0680034729.01
Chr6 mRNA 93530150 93532171 93530150 ID=MsG0680034729.01.T01;Parent=MsG0680034729.01;Name=MsG0680034729.01.T01;_AED=0.49;_eAED=0.49;_QI=0|1|1|1|1|1|4|470|321
Chr6 exon 93530150 93530844 93530150 ID=MsG0680034729.01.T01:exon:13075;Parent=MsG0680034729.01.T01
Chr6 exon 93531216 93531395 93531216 ID=MsG0680034729.01.T01:exon:13074;Parent=MsG0680034729.01.T01
Chr6 exon 93531526 93531769 93531526 ID=MsG0680034729.01.T01:exon:13073;Parent=MsG0680034729.01.T01
Chr6 exon 93531855 93532171 93531855 ID=MsG0680034729.01.T01:exon:13072;Parent=MsG0680034729.01.T01
Chr6 CDS 93531855 93532171 93531855 ID=MsG0680034729.01.T01:cds;Parent=MsG0680034729.01.T01
Chr6 CDS 93531526 93531769 93531526 ID=MsG0680034729.01.T01:cds;Parent=MsG0680034729.01.T01
Chr6 CDS 93531216 93531395 93531216 ID=MsG0680034729.01.T01:cds;Parent=MsG0680034729.01.T01
Chr6 CDS 93530620 93530844 93530620 ID=MsG0680034729.01.T01:cds;Parent=MsG0680034729.01.T01
Chr6 three_prime_UTR 93530150 93530619 93530150 ID=MsG0680034729.01.T01:three_prime_utr;Parent=MsG0680034729.01.T01
Gene Sequence

>MsG0680034729.01.T01

ATGGAAGCAACTAAACTCCATGAGGTGATACTAAATTCGGGGGAAAAGATGCCAGTAATAGGCCTAGGAACTGCTACATCTCCTCTTCCATCAAATGAAGCTCTCACTTCAATTTTGGTTGATGCCATTCACATTGGCTACAGACATTTTGATACAGCTTCTATCTATGGTACTGAAGAACCTCTAGGCCAAGCTGTGTCAAAAGCTTTAGAGATCGGCCTCATAAAAAATCGCGATGAAGTTTTCATCACTTCTAAGTTATGGTGCACCGATGCTCACCATGACCTTGTTCTCAATGCTCTCAAAACCACCCTCAAGAATCTAAGGTTGGAGTATGTGGATCTCTACTTGATTCACTGGCCAGTGAGATTGAAAGAAGATGTTGAAGGCTTTAACTTCACAGGTGAGGATGTGATTCCATTTGATATCAAAGGAACATGGGAAGCTATGGAAGACTGTTACAGATTAGGCTTAGCCAAATCTATTGGTGTTAGTAACTTTCGTATCAAAAAGCTTTCCGTACTCTTGGACAATGCAACCATTTCGCCTGCAGTTAATCAGGTAGAAATGAATCCATCATGGCAACAAGGGAAACTCAGGGAATTCTGCATGAAGAAAGGAATTCATGTGTGTGCATGGTCACCATTGGGAGCATACAAAGTATTTTGGGGTTCTAATGCTGTGATGGAGAACTCTATTCTTCTGGAAATTGCTCAGGCTAGGAAGAAGAGTGTAGCTCAGATAGCACTAAGATGGATACATGAGCAAGGAACAAGTGTAATTGTGAAAAGCTTCAACAAAGAGAGGATGAAACAAAACCTTGAAATATTTGATTGGAAACTGAACCAAGAAGAATTGGACAAAATCAATAAGATTCCACAATGCAGACTTTATAAGGCTGAAATGTTTTTATCTGAAAATGGACCTTACAAATCCTTGGAAGAGCTGTGGGATGGTGACCCTTGA

Protein sequence

>MsG0680034729.01.T01

MEATKLHEVILNSGEKMPVIGLGTATSPLPSNEALTSILVDAIHIGYRHFDTASIYGTEEPLGQAVSKALEIGLIKNRDEVFITSKLWCTDAHHDLVLNALKTTLKNLRLEYVDLYLIHWPVRLKEDVEGFNFTGEDVIPFDIKGTWEAMEDCYRLGLAKSIGVSNFRIKKLSVLLDNATISPAVNQVEMNPSWQQGKLREFCMKKGIHVCAWSPLGAYKVFWGSNAVMENSILLEIAQARKKSVAQIALRWIHEQGTSVIVKSFNKERMKQNLEIFDWKLNQEELDKINKIPQCRLYKAEMFLSENGPYKSLEELWDGDP*