Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005553.01.T02 | XP_013469744.1 | 66.972 | 109 | 0 | 1 | 1 | 109 | 1 | 73 | 2.19E-39 | 144 |
| MsG0180005553.01.T01 | XP_013469744.1 | 95.588 | 340 | 5 | 1 | 1 | 330 | 1 | 340 | 0 | 665 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005553.01.T01 | Q3L181 | 64.478 | 335 | 109 | 1 | 5 | 329 | 1 | 335 | 7.67E-162 | 457 |
| MsG0180005553.01.T02 | C6TBN2 | 58.333 | 60 | 24 | 1 | 50 | 109 | 15 | 73 | 1.62E-18 | 82 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005553.01.T01 | A0A072VPP5 | 95.588 | 340 | 5 | 1 | 1 | 330 | 1 | 340 | 0.0 | 665 |
| MsG0180005553.01.T02 | A0A072VPP5 | 66.972 | 109 | 0 | 1 | 1 | 109 | 1 | 73 | 1.05e-39 | 144 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047815.01 | MsG0180005553.01 | 0.815626 | 8.396161e-52 | 5.819056e-49 |
| MsG0080048258.01 | MsG0180005553.01 | 0.842418 | 2.617419e-58 | 3.966592e-55 |
| MsG0080048781.01 | MsG0180005553.01 | 0.822525 | 2.261412e-53 | 1.897559e-50 |
| MsG0180000111.01 | MsG0180005553.01 | 0.812902 | 3.355045e-51 | 2.159464e-48 |
| MsG0180001293.01 | MsG0180005553.01 | 0.830972 | 2.172554e-55 | 2.325283e-52 |
| MsG0180001588.01 | MsG0180005553.01 | 0.828069 | 1.103409e-54 | 1.085033e-51 |
| MsG0180002211.01 | MsG0180005553.01 | 0.800006 | 1.764878e-48 | 8.127924e-46 |
| MsG0180003360.01 | MsG0180005553.01 | 0.806835 | 6.782307e-50 | 3.719025e-47 |
| MsG0180003427.01 | MsG0180005553.01 | 0.826094 | 3.276468e-54 | 3.042629e-51 |
| MsG0180003485.01 | MsG0180005553.01 | 0.810123 | 1.347741e-50 | 8.057204e-48 |
| MsG0180003857.01 | MsG0180005553.01 | 0.812757 | 3.609902e-51 | 2.314576e-48 |
| MsG0180004120.01 | MsG0180005553.01 | 0.824935 | 6.162109e-54 | 5.537049e-51 |
| MsG0180004185.01 | MsG0180005553.01 | 0.801106 | 1.052734e-48 | 4.985849e-46 |
| MsG0180004538.01 | MsG0180005553.01 | 0.807958 | 3.919800e-50 | 2.213093e-47 |
| MsG0180004583.01 | MsG0180005553.01 | 0.832116 | 1.135812e-55 | 1.257379e-52 |
| MsG0180004828.01 | MsG0180005553.01 | 0.802808 | 4.705784e-49 | 2.327091e-46 |
| MsG0180005002.01 | MsG0180005553.01 | 0.823726 | 1.186043e-53 | 1.029733e-50 |
| MsG0180005553.01 | MsG0180006133.01 | 0.828037 | 1.122970e-54 | 1.103290e-51 |
| MsG0180005553.01 | MsG0280006563.01 | 0.805206 | 1.492700e-49 | 7.850323e-47 |
| MsG0180005553.01 | MsG0280008407.01 | 0.816922 | 4.308469e-52 | 3.093575e-49 |
| MsG0180005553.01 | MsG0280008692.01 | 0.809914 | 1.495088e-50 | 8.889308e-48 |
| MsG0180005553.01 | MsG0280009866.01 | 0.873925 | 1.007262e-67 | 4.448110e-64 |
| MsG0180005553.01 | MsG0280010303.01 | 0.815846 | 7.499003e-52 | 5.228018e-49 |
| MsG0180005553.01 | MsG0280010352.01 | 0.819297 | 1.250661e-52 | 9.585856e-50 |
| MsG0180005553.01 | MsG0380012118.01 | 0.807313 | 5.372137e-50 | 2.982596e-47 |
| MsG0180005553.01 | MsG0380012818.01 | 0.828148 | 1.055868e-54 | 1.040708e-51 |
| MsG0180005553.01 | MsG0380013041.01 | 0.818690 | 1.718270e-52 | 1.295136e-49 |
| MsG0180005553.01 | MsG0380014130.01 | 0.813454 | 2.538574e-51 | 1.658639e-48 |
| MsG0180005553.01 | MsG0380014542.01 | 0.805119 | 1.557182e-49 | 8.171126e-47 |
| MsG0180005553.01 | MsG0380014544.01 | 0.825467 | 4.614011e-54 | 4.208773e-51 |
| MsG0180005553.01 | MsG0380014594.01 | 0.833449 | 5.298780e-56 | 6.104402e-53 |
| MsG0180005553.01 | MsG0380015394.01 | 0.804115 | 2.521898e-49 | 1.289569e-46 |
| MsG0180005553.01 | MsG0380015409.01 | 0.851637 | 7.792879e-61 | 1.587418e-57 |
| MsG0180005553.01 | MsG0380015552.01 | 0.824268 | 8.849868e-54 | 7.800387e-51 |
| MsG0180005553.01 | MsG0380015825.01 | 0.847582 | 1.055644e-59 | 1.885056e-56 |
| MsG0180005553.01 | MsG0380015954.01 | 0.809254 | 2.072200e-50 | 1.210710e-47 |
| MsG0180005553.01 | MsG0380016027.01 | 0.820062 | 8.365787e-53 | 6.551372e-50 |
| MsG0180005553.01 | MsG0380016091.01 | 0.814356 | 1.606099e-51 | 1.075282e-48 |
| MsG0180005553.01 | MsG0380016225.01 | 0.831237 | 1.870133e-55 | 2.017224e-52 |
| MsG0180005553.01 | MsG0380016449.01 | 0.815855 | 7.465126e-52 | 5.205687e-49 |
| MsG0180005553.01 | MsG0380017282.01 | 0.806211 | 9.183996e-50 | 4.956271e-47 |
| MsG0180005553.01 | MsG0380017605.01 | 0.803578 | 3.261218e-49 | 1.644820e-46 |
| MsG0180005553.01 | MsG0380017989.01 | 0.846437 | 2.173943e-59 | 3.741981e-56 |
| MsG0180005553.01 | MsG0480018228.01 | 0.802370 | 5.794496e-49 | 2.833677e-46 |
| MsG0180005553.01 | MsG0480020366.01 | 0.805310 | 1.419834e-49 | 7.487019e-47 |
| MsG0180005553.01 | MsG0480021773.01 | 0.809345 | 1.981374e-50 | 1.160482e-47 |
| MsG0180005553.01 | MsG0480021902.01 | 0.811639 | 6.329530e-51 | 3.938633e-48 |
| MsG0180005553.01 | MsG0480022559.01 | 0.813417 | 2.587188e-51 | 1.688598e-48 |
| MsG0180005553.01 | MsG0480022784.01 | 0.828530 | 8.541277e-55 | 8.512546e-52 |
| MsG0180005553.01 | MsG0480023532.01 | 0.830866 | 2.306948e-55 | 2.461398e-52 |
| MsG0180005553.01 | MsG0480023653.01 | 0.802801 | 4.721741e-49 | 2.334521e-46 |
| MsG0180005553.01 | MsG0580024773.01 | 0.816695 | 4.843769e-52 | 3.456311e-49 |
| MsG0180005553.01 | MsG0580024787.01 | 0.825954 | 3.536164e-54 | 3.271034e-51 |
| MsG0180005553.01 | MsG0580024954.01 | 0.829790 | 4.227131e-55 | 4.371647e-52 |
| MsG0180005553.01 | MsG0580025186.01 | 0.818769 | 1.648778e-52 | 1.245524e-49 |
| MsG0180005553.01 | MsG0580028923.01 | 0.810443 | 1.149587e-50 | 6.930453e-48 |
| MsG0180005553.01 | MsG0580029298.01 | 0.802017 | 6.850327e-49 | 3.319771e-46 |
| MsG0180005553.01 | MsG0580029591.01 | 0.843287 | 1.537715e-58 | 2.394592e-55 |
| MsG0180005553.01 | MsG0780038393.01 | 0.843018 | 1.813920e-58 | 2.800297e-55 |
| MsG0180005553.01 | MsG0780038402.01 | 0.806742 | 7.095981e-50 | 3.881620e-47 |
| MsG0180005553.01 | MsG0780038736.01 | 0.820613 | 6.251591e-53 | 4.970327e-50 |
| MsG0180005553.01 | MsG0780039303.01 | 0.802716 | 4.916303e-49 | 2.425439e-46 |
| MsG0180005553.01 | MsG0780039861.01 | 0.823885 | 1.088655e-53 | 9.493387e-51 |
| MsG0180005553.01 | MsG0780040364.01 | 0.840970 | 6.309453e-58 | 9.136519e-55 |
| MsG0180005553.01 | MsG0780040641.01 | 0.817064 | 4.002373e-52 | 2.885096e-49 |
| MsG0180005553.01 | MsG0780040828.01 | 0.804097 | 2.544463e-49 | 1.300482e-46 |
| MsG0180005553.01 | MsG0780040830.01 | 0.800652 | 1.303393e-48 | 6.102138e-46 |
| MsG0180005553.01 | MsG0780041271.01 | 0.834750 | 2.502008e-56 | 2.996643e-53 |
| MsG0180005553.01 | MsG0780041336.01 | 0.831773 | 1.380033e-55 | 1.512818e-52 |
| MsG0180005553.01 | MsG0780041359.01 | 0.807195 | 5.691693e-50 | 3.150196e-47 |
| MsG0180005553.01 | MsG0780041701.01 | 0.818031 | 2.423078e-52 | 1.793452e-49 |
| MsG0180005553.01 | MsG0880042366.01 | 0.801641 | 8.180347e-49 | 3.926637e-46 |
| MsG0180005553.01 | MsG0880042791.01 | 0.812862 | 3.423618e-51 | 2.201081e-48 |
| MsG0180005553.01 | MsG0880042906.01 | 0.822793 | 1.958529e-53 | 1.655917e-50 |
| MsG0180005553.01 | MsG0880043684.01 | 0.858626 | 7.238488e-63 | 1.859015e-59 |
| MsG0180005553.01 | MsG0880043714.01 | 0.842739 | 2.150891e-58 | 3.291750e-55 |
| MsG0180005553.01 | MsG0880044984.01 | 0.849884 | 2.427484e-60 | 4.669563e-57 |
| MsG0180005553.01 | MsG0880044989.01 | 0.810896 | 9.176850e-51 | 5.600026e-48 |
| MsG0180005553.01 | MsG0880045584.01 | 0.810726 | 9.989320e-51 | 6.067951e-48 |
| MsG0180005553.01 | MsG0880045612.01 | 0.844719 | 6.351715e-59 | 1.034571e-55 |
| MsG0180005553.01 | MsG0880045647.01 | 0.828438 | 8.989735e-55 | 8.935850e-52 |
| MsG0180005553.01 | MsG0880045890.01 | 0.809819 | 1.566906e-50 | 9.293315e-48 |
| MsG0180005553.01 | MsG0880045989.01 | 0.811905 | 5.540987e-51 | 3.472413e-48 |
| MsG0180005553.01 | MsG0880046431.01 | 0.802278 | 6.052508e-49 | 2.952812e-46 |
| MsG0180005553.01 | MsG0880046646.01 | 0.818833 | 1.594821e-52 | 1.206884e-49 |
| MsG0180005553.01 | MsG0880046904.01 | 0.808590 | 2.874817e-50 | 1.650217e-47 |
| MsG0180005553.01 | MsG0880046905.01 | 0.804206 | 2.414235e-49 | 1.237357e-46 |
| MsG0180005553.01 | MsG0880046991.01 | 0.811980 | 5.337663e-51 | 3.351903e-48 |
| MsG0180005553.01 | MsG0880046993.01 | 0.817847 | 2.666235e-52 | 1.963643e-49 |
| MsG0180005553.01 | MsG0880047649.01 | 0.845657 | 3.541879e-59 | 5.944997e-56 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005553.01.T02 | MTR_1g102750 | 66.972 | 109 | 0 | 1 | 1 | 109 | 1 | 73 | 2.66e-43 | 144 |
| MsG0180005553.01.T02 | MTR_1g102750 | 66.364 | 110 | 1 | 1 | 1 | 110 | 1 | 74 | 2.25e-41 | 138 |
| MsG0180005553.01.T02 | MTR_7g114980 | 60.000 | 60 | 24 | 0 | 50 | 109 | 20 | 79 | 1.64e-20 | 84.7 |
| MsG0180005553.01.T02 | MTR_7g114980 | 59.016 | 61 | 25 | 0 | 50 | 110 | 20 | 80 | 6.94e-20 | 82.4 |
| MsG0180005553.01.T02 | MTR_7g114970 | 38.318 | 107 | 29 | 2 | 3 | 109 | 5 | 74 | 7.69e-18 | 77.4 |
| MsG0180005553.01.T02 | MTR_7g114990 | 56.667 | 60 | 26 | 0 | 50 | 109 | 22 | 81 | 1.00e-17 | 77.0 |
| MsG0180005553.01.T02 | MTR_7g114970 | 37.963 | 108 | 30 | 2 | 3 | 110 | 5 | 75 | 1.03e-17 | 75.1 |
| MsG0180005553.01.T02 | MTR_7g114970 | 37.963 | 108 | 30 | 2 | 3 | 110 | 5 | 75 | 4.39e-17 | 74.7 |
| MsG0180005553.01.T02 | MTR_7g114970 | 37.963 | 108 | 30 | 2 | 3 | 110 | 5 | 75 | 4.57e-17 | 74.7 |
| MsG0180005553.01.T02 | MTR_7g115010 | 55.738 | 61 | 27 | 0 | 50 | 110 | 18 | 78 | 1.38e-16 | 73.6 |
| MsG0180005553.01.T02 | MTR_7g021670 | 45.902 | 61 | 32 | 1 | 50 | 110 | 13 | 72 | 1.62e-11 | 59.3 |
| MsG0180005553.01.T02 | MTR_7g021680 | 45.902 | 61 | 32 | 1 | 50 | 110 | 13 | 72 | 2.21e-11 | 59.3 |
| MsG0180005553.01.T02 | MTR_7g021820 | 45.902 | 61 | 32 | 1 | 50 | 110 | 13 | 72 | 2.21e-11 | 59.3 |
| MsG0180005553.01.T02 | MTR_7g021850 | 44.262 | 61 | 33 | 1 | 50 | 110 | 13 | 72 | 5.05e-11 | 58.2 |
| MsG0180005553.01.T01 | MTR_1g102750 | 95.588 | 340 | 5 | 1 | 1 | 330 | 1 | 340 | 0.0 | 665 |
| MsG0180005553.01.T01 | MTR_1g102750 | 95.088 | 285 | 4 | 1 | 1 | 275 | 1 | 285 | 0.0 | 554 |
| MsG0180005553.01.T01 | MTR_7g114980 | 62.757 | 341 | 114 | 2 | 3 | 330 | 9 | 349 | 2.14e-162 | 457 |
| MsG0180005553.01.T01 | MTR_7g114970 | 60.177 | 339 | 123 | 3 | 3 | 330 | 5 | 342 | 8.14e-157 | 442 |
| MsG0180005553.01.T01 | MTR_7g114990 | 60.714 | 336 | 119 | 3 | 5 | 330 | 13 | 345 | 2.75e-155 | 439 |
| MsG0180005553.01.T01 | MTR_7g115010 | 58.284 | 338 | 113 | 3 | 5 | 330 | 9 | 330 | 1.40e-145 | 414 |
| MsG0180005553.01.T01 | MTR_7g114980 | 63.380 | 284 | 91 | 2 | 3 | 273 | 9 | 292 | 2.97e-134 | 384 |
| MsG0180005553.01.T01 | MTR_7g114970 | 61.348 | 282 | 97 | 3 | 3 | 273 | 5 | 285 | 9.92e-132 | 377 |
| MsG0180005553.01.T01 | MTR_7g114970 | 61.210 | 281 | 97 | 3 | 3 | 272 | 5 | 284 | 1.23e-130 | 374 |
| MsG0180005553.01.T01 | MTR_7g021850 | 55.655 | 336 | 131 | 6 | 5 | 329 | 4 | 332 | 1.37e-126 | 366 |
| MsG0180005553.01.T01 | MTR_7g021680 | 54.762 | 336 | 134 | 7 | 5 | 329 | 4 | 332 | 1.21e-122 | 356 |
| MsG0180005553.01.T01 | MTR_7g021820 | 54.762 | 336 | 134 | 7 | 5 | 329 | 4 | 332 | 1.21e-122 | 356 |
| MsG0180005553.01.T01 | MTR_7g114970 | 63.071 | 241 | 78 | 2 | 101 | 330 | 8 | 248 | 2.84e-113 | 328 |
| MsG0180005553.01.T01 | MTR_7g114970 | 63.819 | 199 | 71 | 1 | 3 | 201 | 5 | 202 | 1.36e-94 | 280 |
| MsG0180005553.01.T01 | MTR_7g114970 | 60.500 | 200 | 68 | 2 | 142 | 330 | 1 | 200 | 1.13e-85 | 256 |
| MsG0180005553.01.T01 | MTR_1g102740 | 86.111 | 108 | 15 | 0 | 223 | 330 | 1 | 108 | 1.34e-62 | 194 |
| MsG0180005553.01.T01 | MTR_7g021825 | 55.479 | 146 | 54 | 2 | 161 | 295 | 15 | 160 | 1.76e-53 | 173 |
| MsG0180005553.01.T01 | MTR_7g021670 | 54.615 | 130 | 56 | 3 | 5 | 134 | 4 | 130 | 7.43e-38 | 135 |
| MsG0180005553.01.T01 | MTR_7g021670 | 52.381 | 105 | 46 | 2 | 225 | 329 | 146 | 246 | 2.19e-32 | 121 |
| MsG0180005553.01.T01 | MTR_7g067855 | 40.426 | 141 | 49 | 2 | 225 | 330 | 15 | 155 | 1.20e-29 | 111 |
| MsG0180005553.01.T01 | MTR_1g047250 | 28.882 | 322 | 190 | 10 | 10 | 303 | 6 | 316 | 9.48e-24 | 99.8 |
| MsG0180005553.01.T01 | MTR_3g449790 | 26.480 | 321 | 199 | 10 | 7 | 299 | 37 | 348 | 4.82e-21 | 92.8 |
| MsG0180005553.01.T01 | MTR_3g449790 | 26.168 | 321 | 194 | 10 | 7 | 299 | 37 | 342 | 1.25e-19 | 89.0 |
| MsG0180005553.01.T01 | MTR_3g092140 | 25.989 | 354 | 204 | 16 | 4 | 322 | 35 | 365 | 1.12e-17 | 84.0 |
| MsG0180005553.01.T01 | MTR_6g035180 | 51.724 | 58 | 28 | 0 | 273 | 330 | 7 | 64 | 2.69e-16 | 72.8 |
| MsG0180005553.01.T01 | MTR_4g092750 | 26.818 | 220 | 145 | 6 | 9 | 219 | 5 | 217 | 1.60e-14 | 73.2 |
| MsG0180005553.01.T01 | MTR_4g092750 | 26.818 | 220 | 145 | 6 | 9 | 219 | 5 | 217 | 1.64e-14 | 73.6 |
| MsG0180005553.01.T01 | MTR_4g092750 | 26.818 | 220 | 145 | 6 | 9 | 219 | 5 | 217 | 1.69e-14 | 73.2 |
| MsG0180005553.01.T01 | MTR_1g042730 | 25.076 | 331 | 190 | 13 | 9 | 287 | 65 | 389 | 1.76e-14 | 74.3 |
| MsG0180005553.01.T01 | MTR_8g088160 | 25.397 | 252 | 134 | 9 | 5 | 209 | 40 | 284 | 3.96e-13 | 69.7 |
| MsG0180005553.01.T01 | MTR_7g021685 | 49.231 | 65 | 32 | 1 | 5 | 69 | 4 | 67 | 1.50e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180005553.01.T02 | AT1G60680 | 45.902 | 61 | 32 | 1 | 50 | 110 | 16 | 75 | 2.26e-12 | 61.6 |
| MsG0180005553.01.T02 | AT1G60750 | 44.262 | 61 | 33 | 1 | 50 | 110 | 17 | 76 | 4.17e-12 | 61.2 |
| MsG0180005553.01.T02 | AT1G60680 | 46.667 | 60 | 31 | 1 | 50 | 109 | 16 | 74 | 6.69e-12 | 60.8 |
| MsG0180005553.01.T01 | AT1G60680 | 54.006 | 337 | 141 | 4 | 4 | 329 | 6 | 339 | 1.67e-126 | 366 |
| MsG0180005553.01.T01 | AT1G60690 | 53.412 | 337 | 142 | 5 | 4 | 329 | 6 | 338 | 8.30e-124 | 359 |
| MsG0180005553.01.T01 | AT1G60710 | 54.762 | 336 | 137 | 5 | 5 | 329 | 7 | 338 | 1.16e-123 | 358 |
| MsG0180005553.01.T01 | AT1G60750 | 53.869 | 336 | 126 | 5 | 4 | 329 | 7 | 323 | 1.04e-122 | 355 |
| MsG0180005553.01.T01 | AT1G60730 | 52.976 | 336 | 143 | 5 | 5 | 329 | 7 | 338 | 5.60e-121 | 352 |
| MsG0180005553.01.T01 | AT1G10810 | 52.976 | 336 | 143 | 5 | 5 | 329 | 7 | 338 | 1.12e-118 | 346 |
| MsG0180005553.01.T01 | AT1G60730 | 50.000 | 356 | 143 | 6 | 5 | 329 | 7 | 358 | 5.19e-116 | 340 |
| MsG0180005553.01.T01 | AT1G10810 | 54.851 | 268 | 107 | 4 | 73 | 329 | 22 | 286 | 3.13e-97 | 290 |
| MsG0180005553.01.T01 | AT1G60680 | 60.000 | 215 | 75 | 2 | 4 | 208 | 6 | 219 | 1.53e-86 | 261 |
| MsG0180005553.01.T01 | AT1G10810 | 56.306 | 222 | 84 | 4 | 5 | 215 | 7 | 226 | 7.35e-78 | 239 |
| MsG0180005553.01.T01 | AT1G60730 | 53.425 | 146 | 64 | 3 | 5 | 150 | 7 | 148 | 1.81e-43 | 148 |
| MsG0180005553.01.T01 | AT1G04690 | 30.719 | 306 | 176 | 10 | 10 | 289 | 6 | 301 | 6.06e-28 | 111 |
| MsG0180005553.01.T01 | AT1G06690 | 27.596 | 337 | 191 | 12 | 7 | 305 | 48 | 369 | 1.10e-21 | 94.7 |
| MsG0180005553.01.T01 | AT4G33670 | 34.615 | 156 | 90 | 5 | 10 | 160 | 9 | 157 | 3.61e-19 | 87.0 |
| MsG0180005553.01.T01 | AT5G53580 | 26.205 | 332 | 190 | 15 | 7 | 303 | 39 | 350 | 2.60e-16 | 79.3 |
| MsG0180005553.01.T01 | AT1G04420 | 23.952 | 334 | 190 | 11 | 9 | 287 | 60 | 384 | 6.72e-12 | 66.2 |
Find 81 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGTTTACAGGAGAAAATT+TGG | 0.231620 | 1:+93202826 | MsG0180005553.01.T01:CDS |
| TTCTTTCAAGATGAAACTTA+TGG | 0.239078 | 1:+93201371 | MsG0180005553.01.T01:intron |
| TTTGGATGTGGAGGATTATC+TGG | 0.250656 | 1:+93201459 | MsG0180005553.01.T01:CDS |
| CAGCACTCCCTCACATATTC+AGG | 0.270626 | 1:-93201896 | None:intergenic |
| GAAGGAAAGATAAAATATAT+TGG | 0.282400 | 1:+93202151 | MsG0180005553.01.T01:CDS |
| AAGAAATAATTCCACTTTGC+AGG | 0.298383 | 1:+93202275 | MsG0180005553.01.T01:CDS |
| AGTTCATCCTATTACTGATT+TGG | 0.307944 | 1:+93202216 | MsG0180005553.01.T01:CDS |
| AAGATGAAACTTATGGATAA+AGG | 0.316728 | 1:+93201378 | MsG0180005553.01.T01:intron |
| GAGATCTGATGTATCGAAAA+AGG | 0.319260 | 1:-93201553 | None:intergenic |
| GTCCAATTGGCTACGAAGTT+TGG | 0.338391 | 1:+93201830 | MsG0180005553.01.T01:CDS |
| ATAGTATATCACAATATCTT+TGG | 0.338665 | 1:+93203426 | MsG0180005553.01.T01:CDS |
| GCTATGCATCCAAGGTTTAC+AGG | 0.342718 | 1:+93202815 | MsG0180005553.01.T01:CDS |
| ATTAAGGAAGTATTCAATAG+AGG | 0.343469 | 1:+93201525 | MsG0180005553.01.T01:CDS |
| TCCTATTACTGATTTGGAAA+TGG | 0.358212 | 1:+93202222 | MsG0180005553.01.T01:CDS |
| TCCATTTCCAAATCAGTAAT+AGG | 0.361793 | 1:-93202223 | None:intergenic |
| ATTAGCATGGCTTCTGCATC+AGG | 0.361890 | 1:+93202922 | MsG0180005553.01.T01:CDS |
| TGGAAATGGAGTATTCCTTA+TGG | 0.364153 | 1:+93202236 | MsG0180005553.01.T01:CDS |
| AAGCTTACAGTGTCTTCAAT+TGG | 0.375485 | 1:-93201992 | None:intergenic |
| AGATGGATGCTCAATTATTA+AGG | 0.376538 | 1:+93201509 | MsG0180005553.01.T01:CDS |
| AACAAATTTCCACTATGAAC+TGG | 0.400949 | 1:-93201350 | None:intergenic |
| CGCCAAACTTCGTAGCCAAT+TGG | 0.403863 | 1:-93201832 | None:intergenic |
| TTTGTCTAGTCAGAGCTTGC+TGG | 0.406910 | 1:+93202436 | MsG0180005553.01.T01:CDS |
| TGGAATGCAGGTGTCTAGGC+TGG | 0.407445 | 1:+93201434 | MsG0180005553.01.T01:intron |
| AAGGAAAGATAAAATATATT+GGG | 0.415250 | 1:+93202152 | MsG0180005553.01.T01:CDS |
| TAATTGAGCATCCATCTTCA+TGG | 0.417389 | 1:-93201503 | None:intergenic |
| CAGGTGTCTAGGCTGGGATT+TGG | 0.427729 | 1:+93201441 | MsG0180005553.01.T01:intron |
| TCCCCAGCAATTTCCTCAAC+GGG | 0.432009 | 1:-93203392 | None:intergenic |
| TTCTCTCTATGCAATTACTT+TGG | 0.439392 | 1:-93203467 | None:intergenic |
| TCTCTATGCAATTACTTTGG+CGG | 0.441447 | 1:-93203464 | None:intergenic |
| ACATTCATCATAGTGCTTTG+TGG | 0.443488 | 1:+93201414 | MsG0180005553.01.T01:intron |
| TGCAGGAAAGTCAGTGGTAG+AGG | 0.445925 | 1:+93202412 | MsG0180005553.01.T01:CDS |
| TTCAATGTCACGGGACCATA+AGG | 0.451962 | 1:-93202251 | None:intergenic |
| TTAAGGAAGTATTCAATAGA+GGG | 0.463934 | 1:+93201526 | MsG0180005553.01.T01:CDS |
| TCTAGGCTGGGATTTGGATG+TGG | 0.464685 | 1:+93201447 | MsG0180005553.01.T01:CDS |
| GCTTACACAAGAAGATTTGA+AGG | 0.464856 | 1:+93203352 | MsG0180005553.01.T01:CDS |
| CAAACATGATAATGAAATCA+TGG | 0.469776 | 1:+93201584 | MsG0180005553.01.T01:CDS |
| CTATGAACGAATCAATGACT+TGG | 0.485970 | 1:+93202865 | MsG0180005553.01.T01:CDS |
| CTCAAACAACTTGTAAATGA+AGG | 0.486296 | 1:+93202133 | MsG0180005553.01.T01:CDS |
| TATTTCTTCTTCAATGTCAC+GGG | 0.490828 | 1:-93202260 | None:intergenic |
| CGTTACTTTATCTGATGGGA+TGG | 0.494293 | 1:+93201853 | MsG0180005553.01.T01:CDS |
| TAATGAAATCATGGTTGGTA+AGG | 0.496217 | 1:+93201593 | MsG0180005553.01.T01:CDS |
| GCTCCCCTCTCCCATGAAGA+TGG | 0.496750 | 1:+93201492 | MsG0180005553.01.T01:CDS |
| TTTGTGGAATGCAGGTGTCT+AGG | 0.498511 | 1:+93201430 | MsG0180005553.01.T01:intron |
| TTTGGCGTTACTTTATCTGA+TGG | 0.501663 | 1:+93201848 | MsG0180005553.01.T01:CDS |
| TTACATAACTATATGTTACA+TGG | 0.503059 | 1:+93203606 | MsG0180005553.01.T01:three_prime_UTR |
| ATAAAGGCAGTACCAGGGAT+AGG | 0.507637 | 1:-93202959 | None:intergenic |
| GTTCCCGTTGAGGAAATTGC+TGG | 0.516063 | 1:+93203389 | MsG0180005553.01.T01:CDS |
| AAGAACTTTGAAAACAACAT+TGG | 0.517205 | 1:+93203314 | MsG0180005553.01.T01:CDS |
| TTCGATACATCAGATCTCTA+CGG | 0.518721 | 1:+93201558 | MsG0180005553.01.T01:CDS |
| TTGGCGTTACTTTATCTGAT+GGG | 0.520907 | 1:+93201849 | MsG0180005553.01.T01:CDS |
| TTATTTCTTCTTCAATGTCA+CGG | 0.524264 | 1:-93202261 | None:intergenic |
| CATGATAATGAAATCATGGT+TGG | 0.532090 | 1:+93201588 | MsG0180005553.01.T01:CDS |
| CTTCTCAATTAGCATTAGCA+TGG | 0.532747 | 1:+93202909 | MsG0180005553.01.T01:CDS |
| AGCATCCATCTTCATGGGAG+AGG | 0.535281 | 1:-93201497 | None:intergenic |
| CTCCCCAGCAATTTCCTCAA+CGG | 0.536860 | 1:-93203393 | None:intergenic |
| TTCCCGTTGAGGAAATTGCT+GGG | 0.537080 | 1:+93203390 | MsG0180005553.01.T01:CDS |
| TAAAGGCAGTACCAGGGATA+GGG | 0.538643 | 1:-93202958 | None:intergenic |
| GTAGAGAAGTTATTTCATTG+AGG | 0.540205 | 1:-93203543 | None:intergenic |
| CATAACAGGCTATGCATCCA+AGG | 0.541468 | 1:+93202807 | MsG0180005553.01.T01:intron |
| AATTGAGCATCCATCTTCAT+GGG | 0.547134 | 1:-93201502 | None:intergenic |
| CATGCTAATGCTAATTGAGA+AGG | 0.548715 | 1:-93202908 | None:intergenic |
| AGGCTGGGATTTGGATGTGG+AGG | 0.548733 | 1:+93201450 | MsG0180005553.01.T01:CDS |
| AGCACTCCCTCACATATTCA+GGG | 0.555636 | 1:-93201895 | None:intergenic |
| GCATCCATCTTCATGGGAGA+GGG | 0.558062 | 1:-93201496 | None:intergenic |
| CATAGTGCTTTGTGGAATGC+AGG | 0.560060 | 1:+93201422 | MsG0180005553.01.T01:intron |
| TTCTGAAGCAGTTCCCGTTG+AGG | 0.562114 | 1:+93203379 | MsG0180005553.01.T01:CDS |
| TATGATGAATGTATATCTGA+AGG | 0.570890 | 1:-93201403 | None:intergenic |
| AATTAGTAACCAGTTCATAG+TGG | 0.570984 | 1:+93201341 | MsG0180005553.01.T01:intron |
| TAAGGAAGTATTCAATAGAG+GGG | 0.591144 | 1:+93201527 | MsG0180005553.01.T01:CDS |
| CAATTAATATACCTGCAAAG+TGG | 0.593814 | 1:-93202286 | None:intergenic |
| TACATAACTATATGTTACAT+GGG | 0.596068 | 1:+93203607 | MsG0180005553.01.T01:three_prime_UTR |
| AACGACATAATCCCTATCCC+TGG | 0.597106 | 1:+93202947 | MsG0180005553.01.T01:CDS |
| GGAATGCAGGTGTCTAGGCT+GGG | 0.598837 | 1:+93201435 | MsG0180005553.01.T01:intron |
| AAAATATATTGGGTTGTCAG+AGG | 0.607927 | 1:+93202162 | MsG0180005553.01.T01:CDS |
| AGGTACCCCTGAATATGTGA+GGG | 0.608935 | 1:+93201889 | MsG0180005553.01.T01:CDS |
| AAGGTACCCCTGAATATGTG+AGG | 0.623139 | 1:+93201888 | MsG0180005553.01.T01:CDS |
| TCCCGTTGAGGAAATTGCTG+GGG | 0.626472 | 1:+93203391 | MsG0180005553.01.T01:CDS |
| CATCCATCTTCATGGGAGAG+GGG | 0.630999 | 1:-93201495 | None:intergenic |
| GCTGTGAAGCTAGTCTCAAG+CGG | 0.634148 | 1:+93201915 | MsG0180005553.01.T01:CDS |
| TTAGCATGGCTTCTGCATCA+GGG | 0.655505 | 1:+93202923 | MsG0180005553.01.T01:CDS |
| GCACTCCCTCACATATTCAG+GGG | 0.678614 | 1:-93201894 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATTTACTAATCAATAA+AGG | + | Chr1:93203075-93203094 | MsG0180005553.01.T01:intron | 10.0% |
| !! | AAGGAAAGATAAAATATATT+GGG | + | Chr1:93202152-93202171 | MsG0180005553.01.T01:CDS | 15.0% |
| !! | TGAAGAATATCTTATTATAA+TGG | + | Chr1:93202503-93202522 | MsG0180005553.01.T01:intron | 15.0% |
| !! | TGTAGAATTTCTTATTATAA+TGG | + | Chr1:93202687-93202706 | MsG0180005553.01.T01:intron | 15.0% |
| !! | ATAGTATATCACAATATCTT+TGG | + | Chr1:93203426-93203445 | MsG0180005553.01.T01:CDS | 20.0% |
| !! | ATATTTGTTTGATACCATAT+AGG | + | Chr1:93203278-93203297 | MsG0180005553.01.T01:intron | 20.0% |
| !! | GAAGGAAAGATAAAATATAT+TGG | + | Chr1:93202151-93202170 | MsG0180005553.01.T01:CDS | 20.0% |
| !! | TACATAACTATATGTTACAT+GGG | + | Chr1:93203607-93203626 | MsG0180005553.01.T01:three_prime_UTR | 20.0% |
| !! | TATTTGTTTGATACCATATA+GGG | + | Chr1:93203279-93203298 | MsG0180005553.01.T01:intron | 20.0% |
| !! | TTACATAACTATATGTTACA+TGG | + | Chr1:93203606-93203625 | MsG0180005553.01.T01:three_prime_UTR | 20.0% |
| !!! | AAATACATAAGCATTTTGTA+TGG | + | Chr1:93201656-93201675 | MsG0180005553.01.T01:intron | 20.0% |
| !!! | ATGATTAGTTCAAAATTAAG+AGG | + | Chr1:93201290-93201309 | MsG0180005553.01.T01:intron | 20.0% |
| !!! | TTCTTCTGAAAGATAAATAA+AGG | - | Chr1:93202978-93202997 | None:intergenic | 20.0% |
| ! | AAAATTTACCTCTAAACCTT+GGG | - | Chr1:93201220-93201239 | None:intergenic | 25.0% |
| ! | AAGATGAAACTTATGGATAA+AGG | + | Chr1:93201378-93201397 | MsG0180005553.01.T01:intron | 25.0% |
| ! | AGAAATCATTAAACTACTGT+AGG | + | Chr1:93201314-93201333 | MsG0180005553.01.T01:intron | 25.0% |
| ! | AGTTATTTAGATGTGACAAA+TGG | + | Chr1:93201746-93201765 | MsG0180005553.01.T01:intron | 25.0% |
| ! | ATTAATTGCTTGACATATTC+AGG | + | Chr1:93203021-93203040 | MsG0180005553.01.T01:intron | 25.0% |
| ! | GAAAGTAGGTAGTAATAAAA+GGG | - | Chr1:93203126-93203145 | None:intergenic | 25.0% |
| ! | TAAGATAACCAAGTAAAATC+TGG | - | Chr1:93203057-93203076 | None:intergenic | 25.0% |
| ! | TATGATGAATGTATATCTGA+AGG | - | Chr1:93201406-93201425 | None:intergenic | 25.0% |
| ! | TGAAAGTAGGTAGTAATAAA+AGG | - | Chr1:93203127-93203146 | None:intergenic | 25.0% |
| ! | TGTGAAAAACAAATGTTAAG+TGG | - | Chr1:93201265-93201284 | None:intergenic | 25.0% |
| ! | TTCTTTCAAGATGAAACTTA+TGG | + | Chr1:93201371-93201390 | MsG0180005553.01.T01:intron | 25.0% |
| !! | AAGAACTTTGAAAACAACAT+TGG | + | Chr1:93203314-93203333 | MsG0180005553.01.T01:CDS | 25.0% |
| !! | ATCTATTTCCAGATTTTACT+TGG | + | Chr1:93203046-93203065 | MsG0180005553.01.T01:intron | 25.0% |
| !! | CAAACATGATAATGAAATCA+TGG | + | Chr1:93201584-93201603 | MsG0180005553.01.T01:CDS | 25.0% |
| !! | CAGAAGAATATGATGATTTT+TGG | + | Chr1:93202990-93203009 | MsG0180005553.01.T01:intron | 25.0% |
| !! | TTATTTCTTCTTCAATGTCA+CGG | - | Chr1:93202264-93202283 | None:intergenic | 25.0% |
| !!! | ATTAAGGAAGTATTCAATAG+AGG | + | Chr1:93201525-93201544 | MsG0180005553.01.T01:CDS | 25.0% |
| !!! | TTAAGGAAGTATTCAATAGA+GGG | + | Chr1:93201526-93201545 | MsG0180005553.01.T01:CDS | 25.0% |
| AACAAATTTCCACTATGAAC+TGG | - | Chr1:93201353-93201372 | None:intergenic | 30.0% | |
| AAGAAATAATTCCACTTTGC+AGG | + | Chr1:93202275-93202294 | MsG0180005553.01.T01:CDS | 30.0% | |
| AAGGTTTACAGGAGAAAATT+TGG | + | Chr1:93202826-93202845 | MsG0180005553.01.T01:CDS | 30.0% | |
| AATCATTAAACTACTGTAGG+AGG | + | Chr1:93201317-93201336 | MsG0180005553.01.T01:intron | 30.0% | |
| AATTAGTAACCAGTTCATAG+TGG | + | Chr1:93201341-93201360 | MsG0180005553.01.T01:intron | 30.0% | |
| AGATGGATGCTCAATTATTA+AGG | + | Chr1:93201509-93201528 | MsG0180005553.01.T01:CDS | 30.0% | |
| ATGTTAAGTGGTTGACAATA+AGG | - | Chr1:93201253-93201272 | None:intergenic | 30.0% | |
| CAATTAATATACCTGCAAAG+TGG | - | Chr1:93202289-93202308 | None:intergenic | 30.0% | |
| CTCAAACAACTTGTAAATGA+AGG | + | Chr1:93202133-93202152 | MsG0180005553.01.T01:CDS | 30.0% | |
| CTTTAACATTGACCTCTTTA+TGG | + | Chr1:93202098-93202117 | MsG0180005553.01.T01:intron | 30.0% | |
| GAAAATTTACCTCTAAACCT+TGG | - | Chr1:93201221-93201240 | None:intergenic | 30.0% | |
| GAGGAAAAATAACATTGATG+AGG | + | Chr1:93202589-93202608 | MsG0180005553.01.T01:intron | 30.0% | |
| TATTTCTTCTTCAATGTCAC+GGG | - | Chr1:93202263-93202282 | None:intergenic | 30.0% | |
| TCCATTTCCAAATCAGTAAT+AGG | - | Chr1:93202226-93202245 | None:intergenic | 30.0% | |
| TCTTCTTTCTGTAACATAAC+AGG | + | Chr1:93202793-93202812 | MsG0180005553.01.T01:intron | 30.0% | |
| TGGTCAAAATAACATTGATG+AGG | + | Chr1:93202523-93202542 | MsG0180005553.01.T01:intron | 30.0% | |
| TTCCAACACTTGTAAATTCT+CGG | + | Chr1:93202065-93202084 | MsG0180005553.01.T01:intron | 30.0% | |
| TTCTCTCTATGCAATTACTT+TGG | - | Chr1:93203470-93203489 | None:intergenic | 30.0% | |
| ! | AAAATATATTGGGTTGTCAG+AGG | + | Chr1:93202162-93202181 | MsG0180005553.01.T01:CDS | 30.0% |
| ! | AAATTTTCTCCTGTAAACCT+TGG | - | Chr1:93202827-93202846 | None:intergenic | 30.0% |
| ! | AGTTCATCCTATTACTGATT+TGG | + | Chr1:93202216-93202235 | MsG0180005553.01.T01:CDS | 30.0% |
| ! | CAGTATATGGTCAAGATTTT+AGG | - | Chr1:93203203-93203222 | None:intergenic | 30.0% |
| ! | CATGATAATGAAATCATGGT+TGG | + | Chr1:93201588-93201607 | MsG0180005553.01.T01:CDS | 30.0% |
| ! | GCAATAATAGCATTGAAGAA+TGG | + | Chr1:93201164-93201183 | MsG0180005553.01.T01:intron | 30.0% |
| ! | GTAGAGAAGTTATTTCATTG+AGG | - | Chr1:93203546-93203565 | None:intergenic | 30.0% |
| ! | TAATGAAATCATGGTTGGTA+AGG | + | Chr1:93201593-93201612 | MsG0180005553.01.T01:CDS | 30.0% |
| ! | TGAATCTTTTCTTCTGTCAT+AGG | + | Chr1:93201781-93201800 | MsG0180005553.01.T01:intron | 30.0% |
| !! | TAAGGAAGTATTCAATAGAG+GGG | + | Chr1:93201527-93201546 | MsG0180005553.01.T01:CDS | 30.0% |
| !! | TCCTATTACTGATTTGGAAA+TGG | + | Chr1:93202222-93202241 | MsG0180005553.01.T01:CDS | 30.0% |
| !!! | ATGTTATTTTTCCTCACTTC+AGG | - | Chr1:93202584-93202603 | None:intergenic | 30.0% |
| AAGCTTACAGTGTCTTCAAT+TGG | - | Chr1:93201995-93202014 | None:intergenic | 35.0% | |
| AATAACATTGATGAGCTTGC+TGG | + | Chr1:93202634-93202653 | MsG0180005553.01.T01:intron | 35.0% | |
| AATTGAGCATCCATCTTCAT+GGG | - | Chr1:93201505-93201524 | None:intergenic | 35.0% | |
| ACATTCATCATAGTGCTTTG+TGG | + | Chr1:93201414-93201433 | MsG0180005553.01.T01:intron | 35.0% | |
| ACTAAGTGTAGTACTAGTAG+AGG | - | Chr1:93202029-93202048 | None:intergenic | 35.0% | |
| AGATAAATAAAGGCAGTACC+AGG | - | Chr1:93202968-93202987 | None:intergenic | 35.0% | |
| ATTCAAAAGAAAATCCCTGC+AGG | - | Chr1:93202768-93202787 | None:intergenic | 35.0% | |
| ATTGACCTCTTTATGGAAGA+TGG | + | Chr1:93202105-93202124 | MsG0180005553.01.T01:intron | 35.0% | |
| CATGCTAATGCTAATTGAGA+AGG | - | Chr1:93202911-93202930 | None:intergenic | 35.0% | |
| CTATGAACGAATCAATGACT+TGG | + | Chr1:93202865-93202884 | MsG0180005553.01.T01:CDS | 35.0% | |
| CTTCTCAATTAGCATTAGCA+TGG | + | Chr1:93202909-93202928 | MsG0180005553.01.T01:CDS | 35.0% | |
| GAGATCTGATGTATCGAAAA+AGG | - | Chr1:93201556-93201575 | None:intergenic | 35.0% | |
| GATAAATAAAGGCAGTACCA+GGG | - | Chr1:93202967-93202986 | None:intergenic | 35.0% | |
| GCTTACACAAGAAGATTTGA+AGG | + | Chr1:93203352-93203371 | MsG0180005553.01.T01:CDS | 35.0% | |
| TAAGTGGTTGACAATAAGGA+AGG | - | Chr1:93201249-93201268 | None:intergenic | 35.0% | |
| TAATTGAGCATCCATCTTCA+TGG | - | Chr1:93201506-93201525 | None:intergenic | 35.0% | |
| TATCCATCACTAACTTTGCT+TGG | + | Chr1:93203149-93203168 | MsG0180005553.01.T01:intron | 35.0% | |
| TCAGTTTAGTAGTCCCTATA+TGG | - | Chr1:93203295-93203314 | None:intergenic | 35.0% | |
| TCTCTATGCAATTACTTTGG+CGG | - | Chr1:93203467-93203486 | None:intergenic | 35.0% | |
| TGCAGTATCTACACAGTATA+TGG | - | Chr1:93203216-93203235 | None:intergenic | 35.0% | |
| TTCGATACATCAGATCTCTA+CGG | + | Chr1:93201558-93201577 | MsG0180005553.01.T01:CDS | 35.0% | |
| ! | ATTTTTCCTCACTTCAGGAA+TGG | - | Chr1:93202579-93202598 | None:intergenic | 35.0% |
| ! | TGGAAATGGAGTATTCCTTA+TGG | + | Chr1:93202236-93202255 | MsG0180005553.01.T01:CDS | 35.0% |
| ! | TTATCTGATGGGATGGTTTT+AGG | + | Chr1:93201860-93201879 | MsG0180005553.01.T01:CDS | 35.0% |
| ! | TTGGCGTTACTTTATCTGAT+GGG | + | Chr1:93201849-93201868 | MsG0180005553.01.T01:CDS | 35.0% |
| ! | TTTGGCGTTACTTTATCTGA+TGG | + | Chr1:93201848-93201867 | MsG0180005553.01.T01:CDS | 35.0% |
| !! | AGTGATGGATATGTGAAAGT+AGG | - | Chr1:93203140-93203159 | None:intergenic | 35.0% |
| !! | TATCTGATGGGATGGTTTTA+GGG | + | Chr1:93201861-93201880 | MsG0180005553.01.T01:CDS | 35.0% |
| !!! | TAGCCAATTGGACTTTTTTG+CGG | - | Chr1:93201823-93201842 | None:intergenic | 35.0% |
| AAAGAAAATCCCTGCAGGAA+TGG | - | Chr1:93202763-93202782 | None:intergenic | 40.0% | |
| CACCGAGAATTTACAAGTGT+TGG | - | Chr1:93202070-93202089 | None:intergenic | 40.0% | |
| GAATTAGTTCCATTCCTGCA+GGG | + | Chr1:93202751-93202770 | MsG0180005553.01.T01:intron | 40.0% | |
| TGAATTAGTTCCATTCCTGC+AGG | + | Chr1:93202750-93202769 | MsG0180005553.01.T01:intron | 40.0% | |
| TTACTTCCATTCCTGAAGTG+AGG | + | Chr1:93202570-93202589 | MsG0180005553.01.T01:intron | 40.0% | |
| TTTGGATGTGGAGGATTATC+TGG | + | Chr1:93201459-93201478 | MsG0180005553.01.T01:CDS | 40.0% | |
| ! | AAGAAGCTTTGTGTACTTGC+AGG | + | Chr1:93202346-93202365 | MsG0180005553.01.T01:intron | 40.0% |
| ! | AGAAGCTTTGTGTACTTGCA+GGG | + | Chr1:93202347-93202366 | MsG0180005553.01.T01:intron | 40.0% |
| ! | CGTTACTTTATCTGATGGGA+TGG | + | Chr1:93201853-93201872 | MsG0180005553.01.T01:CDS | 40.0% |
| !!! | AGCCAATTGGACTTTTTTGC+GGG | - | Chr1:93201822-93201841 | None:intergenic | 40.0% |
| !!! | ATCTGATGGGATGGTTTTAG+GGG | + | Chr1:93201862-93201881 | MsG0180005553.01.T01:CDS | 40.0% |
| !!! | CTTTTTTGCAGGAAAGTCAG+TGG | + | Chr1:93202406-93202425 | MsG0180005553.01.T01:CDS | 40.0% |
| AACGACATAATCCCTATCCC+TGG | + | Chr1:93202947-93202966 | MsG0180005553.01.T01:CDS | 45.0% | |
| ACAAGTCCCAAGAGTCAAAC+TGG | + | Chr1:93201191-93201210 | MsG0180005553.01.T01:CDS | 45.0% | |
| AGCACTCCCTCACATATTCA+GGG | - | Chr1:93201898-93201917 | None:intergenic | 45.0% | |
| AGGTACCCCTGAATATGTGA+GGG | + | Chr1:93201889-93201908 | MsG0180005553.01.T01:CDS | 45.0% | |
| ATAAAGGCAGTACCAGGGAT+AGG | - | Chr1:93202962-93202981 | None:intergenic | 45.0% | |
| ATTAGCATGGCTTCTGCATC+AGG | + | Chr1:93202922-93202941 | MsG0180005553.01.T01:CDS | 45.0% | |
| CAAGTCCCAAGAGTCAAACT+GGG | + | Chr1:93201192-93201211 | MsG0180005553.01.T01:CDS | 45.0% | |
| CATAACAGGCTATGCATCCA+AGG | + | Chr1:93202807-93202826 | MsG0180005553.01.T01:intron | 45.0% | |
| CATAGTGCTTTGTGGAATGC+AGG | + | Chr1:93201422-93201441 | MsG0180005553.01.T01:intron | 45.0% | |
| CTCCTCCATCTTCCATAAAG+AGG | - | Chr1:93202113-93202132 | None:intergenic | 45.0% | |
| GACCTCTTTATGGAAGATGG+AGG | + | Chr1:93202108-93202127 | MsG0180005553.01.T01:intron | 45.0% | |
| GCTATGCATCCAAGGTTTAC+AGG | + | Chr1:93202815-93202834 | MsG0180005553.01.T01:CDS | 45.0% | |
| GTCCAATTGGCTACGAAGTT+TGG | + | Chr1:93201830-93201849 | MsG0180005553.01.T01:CDS | 45.0% | |
| GTGCCAAGCAAAGTTAGTGA+TGG | - | Chr1:93203155-93203174 | None:intergenic | 45.0% | |
| GTGGTTGACAATAAGGAAGG+AGG | - | Chr1:93201246-93201265 | None:intergenic | 45.0% | |
| TAAAGGCAGTACCAGGGATA+GGG | - | Chr1:93202961-93202980 | None:intergenic | 45.0% | |
| TCCCCGCAAAAAAGTCCAAT+TGG | + | Chr1:93201817-93201836 | MsG0180005553.01.T01:CDS | 45.0% | |
| TTAGCATGGCTTCTGCATCA+GGG | + | Chr1:93202923-93202942 | MsG0180005553.01.T01:CDS | 45.0% | |
| TTCAATGTCACGGGACCATA+AGG | - | Chr1:93202254-93202273 | None:intergenic | 45.0% | |
| TTCCCGTTGAGGAAATTGCT+GGG | + | Chr1:93203390-93203409 | MsG0180005553.01.T01:CDS | 45.0% | |
| TTTGTCTAGTCAGAGCTTGC+TGG | + | Chr1:93202436-93202455 | MsG0180005553.01.T01:CDS | 45.0% | |
| TTTGTGGAATGCAGGTGTCT+AGG | + | Chr1:93201430-93201449 | MsG0180005553.01.T01:intron | 45.0% | |
| TTTGTGTACTTGCAGGGCAT+TGG | + | Chr1:93202353-93202372 | MsG0180005553.01.T01:intron | 45.0% | |
| ! | AAGGTACCCCTGAATATGTG+AGG | + | Chr1:93201888-93201907 | MsG0180005553.01.T01:CDS | 45.0% |
| !!! | GCCAATTGGACTTTTTTGCG+GGG | - | Chr1:93201821-93201840 | None:intergenic | 45.0% |
| !!! | GGGATGGTTTTAGGGGTAAA+AGG | + | Chr1:93201869-93201888 | MsG0180005553.01.T01:CDS | 45.0% |
| ACTGGGTACCCAAGGTTTAG+AGG | + | Chr1:93201209-93201228 | MsG0180005553.01.T01:CDS | 50.0% | |
| AGAGTCAAACTGGGTACCCA+AGG | + | Chr1:93201201-93201220 | MsG0180005553.01.T01:CDS | 50.0% | |
| AGCATCCATCTTCATGGGAG+AGG | - | Chr1:93201500-93201519 | None:intergenic | 50.0% | |
| CAGCACTCCCTCACATATTC+AGG | - | Chr1:93201899-93201918 | None:intergenic | 50.0% | |
| CATCCATCTTCATGGGAGAG+GGG | - | Chr1:93201498-93201517 | None:intergenic | 50.0% | |
| CGCCAAACTTCGTAGCCAAT+TGG | - | Chr1:93201835-93201854 | None:intergenic | 50.0% | |
| CTCCCCAGCAATTTCCTCAA+CGG | - | Chr1:93203396-93203415 | None:intergenic | 50.0% | |
| GCACTCCCTCACATATTCAG+GGG | - | Chr1:93201897-93201916 | None:intergenic | 50.0% | |
| GCATCCATCTTCATGGGAGA+GGG | - | Chr1:93201499-93201518 | None:intergenic | 50.0% | |
| GGGTACCCAGTTTGACTCTT+GGG | - | Chr1:93201200-93201219 | None:intergenic | 50.0% | |
| GTTCCCGTTGAGGAAATTGC+TGG | + | Chr1:93203389-93203408 | MsG0180005553.01.T01:CDS | 50.0% | |
| TCCCCAGCAATTTCCTCAAC+GGG | - | Chr1:93203395-93203414 | None:intergenic | 50.0% | |
| TCCCGTTGAGGAAATTGCTG+GGG | + | Chr1:93203391-93203410 | MsG0180005553.01.T01:CDS | 50.0% | |
| TCTAGGCTGGGATTTGGATG+TGG | + | Chr1:93201447-93201466 | MsG0180005553.01.T01:CDS | 50.0% | |
| TGCAAAAAAGCCGCGACCAA+GGG | - | Chr1:93202396-93202415 | None:intergenic | 50.0% | |
| TGCAGGAAAGTCAGTGGTAG+AGG | + | Chr1:93202412-93202431 | MsG0180005553.01.T01:CDS | 50.0% | |
| TGGGTACCCAGTTTGACTCT+TGG | - | Chr1:93201201-93201220 | None:intergenic | 50.0% | |
| ! | GCTGTGAAGCTAGTCTCAAG+CGG | + | Chr1:93201915-93201934 | MsG0180005553.01.T01:CDS | 50.0% |
| !! | CTTGCAGGGCATTGGAATTG+TGG | + | Chr1:93202361-93202380 | MsG0180005553.01.T01:intron | 50.0% |
| !! | TTCTGAAGCAGTTCCCGTTG+AGG | + | Chr1:93203379-93203398 | MsG0180005553.01.T01:CDS | 50.0% |
| AGGCTGGGATTTGGATGTGG+AGG | + | Chr1:93201450-93201469 | MsG0180005553.01.T01:CDS | 55.0% | |
| ATTGTGGCATACAGCCCCCT+TGG | + | Chr1:93202377-93202396 | MsG0180005553.01.T01:intron | 55.0% | |
| CAAAAAAGCCGCGACCAAGG+GGG | - | Chr1:93202394-93202413 | None:intergenic | 55.0% | |
| CAGGTGTCTAGGCTGGGATT+TGG | + | Chr1:93201441-93201460 | MsG0180005553.01.T01:intron | 55.0% | |
| CTGCAAAAAAGCCGCGACCA+AGG | - | Chr1:93202397-93202416 | None:intergenic | 55.0% | |
| GCAAAAAAGCCGCGACCAAG+GGG | - | Chr1:93202395-93202414 | None:intergenic | 55.0% | |
| GGAATGCAGGTGTCTAGGCT+GGG | + | Chr1:93201435-93201454 | MsG0180005553.01.T01:intron | 55.0% | |
| TGGAATGCAGGTGTCTAGGC+TGG | + | Chr1:93201434-93201453 | MsG0180005553.01.T01:intron | 55.0% | |
| !!! | CTTGGTCGCGGCTTTTTTGC+AGG | + | Chr1:93202395-93202414 | MsG0180005553.01.T01:CDS | 55.0% |
| GCTCCCCTCTCCCATGAAGA+TGG | + | Chr1:93201492-93201511 | MsG0180005553.01.T01:CDS | 60.0% | |
| GCATACAGCCCCCTTGGTCG+CGG | + | Chr1:93202383-93202402 | MsG0180005553.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 93201161 | 93203646 | 93201161 | ID=MsG0180005553.01;Name=MsG0180005553.01 |
| Chr1 | mRNA | 93201161 | 93203646 | 93201161 | ID=MsG0180005553.01.T01;Parent=MsG0180005553.01;Name=MsG0180005553.01.T01;_AED=0.50;_eAED=0.50;_QI=22|0.83|0.71|1|0.66|0.71|7|171|330 |
| Chr1 | exon | 93201444 | 93201614 | 93201444 | ID=MsG0180005553.01.T01:exon:16047;Parent=MsG0180005553.01.T01 |
| Chr1 | exon | 93201803 | 93202006 | 93201803 | ID=MsG0180005553.01.T01:exon:16048;Parent=MsG0180005553.01.T01 |
| Chr1 | exon | 93202124 | 93202296 | 93202124 | ID=MsG0180005553.01.T01:exon:16049;Parent=MsG0180005553.01.T01 |
| Chr1 | exon | 93202391 | 93202457 | 93202391 | ID=MsG0180005553.01.T01:exon:16050;Parent=MsG0180005553.01.T01 |
| Chr1 | exon | 93202815 | 93202968 | 93202815 | ID=MsG0180005553.01.T01:exon:16051;Parent=MsG0180005553.01.T01 |
| Chr1 | exon | 93203300 | 93203646 | 93203300 | ID=MsG0180005553.01.T01:exon:16052;Parent=MsG0180005553.01.T01 |
| Chr1 | five_prime_UTR | 93201161 | 93201182 | 93201161 | ID=MsG0180005553.01.T01:five_prime_utr;Parent=MsG0180005553.01.T01 |
| Chr1 | CDS | 93201183 | 93201230 | 93201183 | ID=MsG0180005553.01.T01:cds;Parent=MsG0180005553.01.T01 |
| Chr1 | CDS | 93201444 | 93201614 | 93201444 | ID=MsG0180005553.01.T01:cds;Parent=MsG0180005553.01.T01 |
| Chr1 | CDS | 93201803 | 93202006 | 93201803 | ID=MsG0180005553.01.T01:cds;Parent=MsG0180005553.01.T01 |
| Chr1 | CDS | 93202124 | 93202296 | 93202124 | ID=MsG0180005553.01.T01:cds;Parent=MsG0180005553.01.T01 |
| Chr1 | CDS | 93202391 | 93202457 | 93202391 | ID=MsG0180005553.01.T01:cds;Parent=MsG0180005553.01.T01 |
| Chr1 | CDS | 93202815 | 93202968 | 93202815 | ID=MsG0180005553.01.T01:cds;Parent=MsG0180005553.01.T01 |
| Chr1 | CDS | 93203300 | 93203475 | 93203300 | ID=MsG0180005553.01.T01:cds;Parent=MsG0180005553.01.T01 |
| Chr1 | three_prime_UTR | 93203476 | 93203646 | 93203476 | ID=MsG0180005553.01.T01:three_prime_utr;Parent=MsG0180005553.01.T01 |
| Chr1 | mRNA | 93201161 | 93201626 | 93201161 | ID=MsG0180005553.01.T02;Parent=MsG0180005553.01;Name=MsG0180005553.01.T02;_AED=0.50;_eAED=0.65;_QI=22|0|0.5|1|0|0|2|0|112 |
| Chr1 | exon | 93201336 | 93201626 | 93201336 | ID=MsG0180005553.01.T02:exon:16053;Parent=MsG0180005553.01.T02 |
| Chr1 | five_prime_UTR | 93201161 | 93201182 | 93201161 | ID=MsG0180005553.01.T02:five_prime_utr;Parent=MsG0180005553.01.T02 |
| Chr1 | CDS | 93201183 | 93201230 | 93201183 | ID=MsG0180005553.01.T02:cds;Parent=MsG0180005553.01.T02 |
| Chr1 | CDS | 93201336 | 93201626 | 93201336 | ID=MsG0180005553.01.T02:cds;Parent=MsG0180005553.01.T02 |
| Gene Sequence |
| Protein sequence |
