AlfalfaGEDB | MsG0780040329.01

M. sativa cultivar ZhongmuNo.1 / MsG0780040329.01

KEGG: K02735
GO: GO:0004175 GO:0004298 GO:0005839 GO:0019774 GO:0043161 GO:0051603
PFAM: PF00227

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040329.01.T01	RDY10666.1	77.434	226	42	3	1	225	1	218	4.82E-118	345
MsG0780040329.01.T02	RDY10666.1	77.434	226	42	3	1	225	1	218	4.82E-118	345

Showing 1 to 2 of 2 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040329.01.T01	Q9XI05	92.357	157	12	0	1	157	1	157	3.87E-107	310
MsG0780040329.01.T02	Q9XI05	92.357	157	12	0	1	157	1	157	3.87E-107	310

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040329.01.T01	A0A371I6J2	77.434	226	42	3	1	225	1	218	2.30e-118	345
MsG0780040329.01.T02	A0A371I6J2	77.434	226	42	3	1	225	1	218	2.30e-118	345

Showing 1 to 2 of 2 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0280006949.01	MsG0780040329.01	0.823555	1.300438e-53	1.123391e-50
MsG0780040329.01	MsG0880046253.01	0.815507	8.922549e-52	6.163523e-49

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0180006029.01	MsG0780040329.01	PPI
MsG0180006029.01	MsG0780040329.01	PPI
MsG0280009575.01	MsG0780040329.01	PPI
MsG0280009575.01	MsG0780040329.01	PPI
MsG0280011059.01	MsG0780040329.01	PPI
MsG0380017568.01	MsG0780040329.01	PPI
MsG0580024181.01	MsG0780040329.01	PPI
MsG0580029892.01	MsG0780040329.01	PPI
MsG0780040329.01	MsG0580029895.01	PPI
MsG0780040329.01	MsG0780037360.01	PPI

Showing 1 to 10 of 45 entries

Previous1 2 3 4 5Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040329.01.T01	MTR_7g088490	100.000	157	0	1	157	1	157	5.99e-115	327
MsG0780040329.01.T01	MTR_4g087680	95.541	157	7	1	157	1	157	1.35e-110	316
MsG0780040329.01.T01	MTR_2g098010	32.308	130	88	1	130	8	137	2.67e-17	77.8
MsG0780040329.01.T01	MTR_5g079740	32.308	130	88	1	130	8	137	2.75e-17	77.8
MsG0780040329.01.T02	MTR_7g088490	100.000	157	0	1	157	1	157	5.99e-115	327
MsG0780040329.01.T02	MTR_4g087680	95.541	157	7	1	157	1	157	1.35e-110	316
MsG0780040329.01.T02	MTR_2g098010	32.308	130	88	1	130	8	137	2.67e-17	77.8
MsG0780040329.01.T02	MTR_5g079740	32.308	130	88	1	130	8	137	2.75e-17	77.8

Showing 1 to 8 of 8 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780040329.01.T01	AT1G21720	92.357	157	12	1	157	1	157	3.95e-108	310
MsG0780040329.01.T01	AT1G77440	92.357	157	12	1	157	1	157	3.09e-107	307
MsG0780040329.01.T01	AT1G77440	92.357	157	12	1	157	1	157	3.09e-107	307
MsG0780040329.01.T01	AT3G60820	32.308	130	88	1	130	8	137	9.89e-18	79.3
MsG0780040329.01.T01	AT3G60820	32.308	130	88	1	130	8	137	9.89e-18	79.3
MsG0780040329.01.T01	AT3G60820	32.308	130	88	1	130	8	137	1.02e-17	79.3
MsG0780040329.01.T02	AT1G21720	92.357	157	12	1	157	1	157	3.95e-108	310
MsG0780040329.01.T02	AT1G77440	92.357	157	12	1	157	1	157	3.09e-107	307
MsG0780040329.01.T02	AT1G77440	92.357	157	12	1	157	1	157	3.09e-107	307
MsG0780040329.01.T02	AT3G60820	32.308	130	88	1	130	8	137	9.89e-18	79.3

Showing 1 to 10 of 12 entries

Previous1 2Next

Find 23 sgRNAs with CRISPR-Local

Find 865 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGATGAATTGGATTCG+GGG	0.705008	7:-75999071	None:intergenic
ACAAAGGTACCCATTAACAA+CGG	0.698583	7:-75998857	None:intergenic
ACATGTGAATAACATCTTAA+GGG	0.422940	7:-75999097	None:intergenic
ACTTTAAGTAGTTGATCAGA+TGG	0.542892	7:-75998785	None:intergenic
AGGTACCCATTAACAACGGA+TGG	0.607705	7:-75998853	None:intergenic
ATATGTATTGGAATGTTTCT+AGG	0.344229	7:+75999003	MsG0780040329.01.T01:three_prime_UTR
ATCCTTTCCTTTACTTCTGT+TGG	0.340096	7:-75998732	None:intergenic
ATGTACCATCCGTTGTTAAT+GGG	0.423469	7:+75998848	MsG0780040329.01.T01:three_prime_UTR
ATTGAAGTTCACAATAACAA+AGG	0.583242	7:-75998873	None:intergenic
CACATGTGAATAACATCTTA+AGG	0.363756	7:-75999098	None:intergenic

Showing 1 to 10 of 23 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACGATGAATTGGATTC+GGG	-	Chr7:75999075-75999094	None:intergenic	30.0%
AAAAGACTATAGTGAAACCA+GGG	-	Chr7:76006395-76006414	None:intergenic	30.0%
AAAGCATACAAGAAAACAAC+TGG	-	Chr7:76001561-76001580	None:intergenic	30.0%
AAAGGTTGTAAAAGTCTAAG+TGG	-	Chr7:76001158-76001177	None:intergenic	30.0%
AACAATAGAGAGAGAAAAAG+AGG	-	Chr7:76004763-76004782	None:intergenic	30.0%
AACTTCAGAATGTTTCTTCT+GGG	+	Chr7:76002863-76002882	MsG0780040329.01.T01:intron	30.0%
AAGATGAAAAAGGTAGCAAA+AGG	-	Chr7:76002084-76002103	None:intergenic	30.0%
AATAACAGGAATCACATAAG+TGG	-	Chr7:76003570-76003589	None:intergenic	30.0%
AATCGCCTAAATTAAAGAAG+AGG	+	Chr7:75996494-75996513	MsG0780040329.01.T01:intron	30.0%
AATGTTTGAGAATCAAACAG+AGG	+	Chr7:76001421-76001440	MsG0780040329.01.T01:intron	30.0%

Showing 1 to 10 of 865 entries

Previous1 2 3 4 5…87Next

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	75994211	76007573	75994211	ID=MsG0780040329.01;Name=MsG0780040329.01
Chr7	mRNA	75994211	76007573	75994211	ID=MsG0780040329.01.T01;Parent=MsG0780040329.01;Name=MsG0780040329.01.T01;_AED=0.49;_eAED=0.54;_QI=91\|0.71\|0.87\|1\|0.57\|0.62\|8\|305\|228
Chr7	exon	75998728	75999099	75998728	ID=MsG0780040329.01.T01:exon:14955;Parent=MsG0780040329.01.T01
Chr7	exon	76005039	76005050	76005039	ID=MsG0780040329.01.T01:exon:14956;Parent=MsG0780040329.01.T01
Chr7	exon	76007542	76007573	76007542	ID=MsG0780040329.01.T01:exon:14957;Parent=MsG0780040329.01.T01
Chr7	five_prime_UTR	75994211	75994301	75994211	ID=MsG0780040329.01.T01:five_prime_utr;Parent=MsG0780040329.01.T01
Chr7	CDS	75994302	75994489	75994302	ID=MsG0780040329.01.T01:cds;Parent=MsG0780040329.01.T01
Chr7	CDS	75994582	75994689	75994582	ID=MsG0780040329.01.T01:cds;Parent=MsG0780040329.01.T01
Chr7	CDS	75995625	75995714	75995625	ID=MsG0780040329.01.T01:cds;Parent=MsG0780040329.01.T01
Chr7	CDS	75997277	75997361	75997277	ID=MsG0780040329.01.T01:cds;Parent=MsG0780040329.01.T01
Chr7	CDS	75997963	75998067	75997963	ID=MsG0780040329.01.T01:cds;Parent=MsG0780040329.01.T01
Chr7	CDS	75998728	75998838	75998728	ID=MsG0780040329.01.T01:cds;Parent=MsG0780040329.01.T01
Chr7	three_prime_UTR	75998839	75999099	75998839	ID=MsG0780040329.01.T01:three_prime_utr;Parent=MsG0780040329.01.T01
Chr7	three_prime_UTR	76005039	76005050	76005039	ID=MsG0780040329.01.T01:three_prime_utr;Parent=MsG0780040329.01.T01
Chr7	three_prime_UTR	76007542	76007573	76007542	ID=MsG0780040329.01.T01:three_prime_utr;Parent=MsG0780040329.01.T01
Chr7	mRNA	75994211	75999148	75994211	ID=MsG0780040329.01.T02;Parent=MsG0780040329.01;Name=MsG0780040329.01.T02;_AED=0.49;_eAED=0.54;_QI=91\|0.6\|0.83\|1\|0.8\|0.83\|6\|310\|228
Chr7	exon	75998728	75999148	75998728	ID=MsG0780040329.01.T02:exon:14958;Parent=MsG0780040329.01.T02
Chr7	five_prime_UTR	75994211	75994301	75994211	ID=MsG0780040329.01.T02:five_prime_utr;Parent=MsG0780040329.01.T02
Chr7	CDS	75994302	75994489	75994302	ID=MsG0780040329.01.T02:cds;Parent=MsG0780040329.01.T02
Chr7	CDS	75994582	75994689	75994582	ID=MsG0780040329.01.T02:cds;Parent=MsG0780040329.01.T02
Chr7	CDS	75995625	75995714	75995625	ID=MsG0780040329.01.T02:cds;Parent=MsG0780040329.01.T02
Chr7	CDS	75997277	75997361	75997277	ID=MsG0780040329.01.T02:cds;Parent=MsG0780040329.01.T02
Chr7	CDS	75997963	75998067	75997963	ID=MsG0780040329.01.T02:cds;Parent=MsG0780040329.01.T02
Chr7	CDS	75998728	75998838	75998728	ID=MsG0780040329.01.T02:cds;Parent=MsG0780040329.01.T02
Chr7	three_prime_UTR	75998839	75999148	75998839	ID=MsG0780040329.01.T02:three_prime_utr;Parent=MsG0780040329.01.T02

Gene Sequence

>MsG0780040329.01.T01

ATGTCGATTTTCGAGTACAACGGAAGTGCCCTAGTAGCCATGGTTGGCAAGAATTGCTTCGCCATTGCCAGCGATCGAAGACTCGGTGTTCAGCTTCAAACCATAGCTACCGATTTCCAAAGAATTTCCAAAATTCATGATAAACTCTTCATCGGTCTTTCTGGACTCGCCACCGATTCTCAAACACTGTATCAGCGTCTTGTGTTTCGGCACAAACTGTATCAGCTTCGTGAAGAACGTGATATGAAACCGGAGACTTTTGCTAGTTTGGTGTCTTCTATGCAATACGAGAAACGGTTCGGTCCATACTTTTGCCAGCCTGTAATTGCTGGATTAGGGGATGATGACAAACCATTCATTTGCACAATGGACGCGATTGGAGCAAAGGAACTTGCAAAAGACTTTGTTGTTGCTGGAACTGCGTCCGAGTCTTTGTATGGTGCTTGTGAATCGATGTTTAAGCCTGACATGTTTAAGATAGAGTTTGGGCTACATTCTAGGGCCACATGCAAGTTCTATAGGAAGATCGATGATTGTACTGCTGCTAGGCAAAAGCAACAAGCAGAAAAGATCAGGCACTCCAACAGAAGTAAAGGAAAGGATTTTGAAGGGAAGAATGGATTAAGTTTTAAGCCATCTGATCAACTACTTAAAGTTCACTATGTTTTCTGTTTAATTCTGAGCTGA

>MsG0780040329.01.T02

Protein sequence

>MsG0780040329.01.T01

MSIFEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDKLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFASLVSSMQYEKRFGPYFCQPVIAGLGDDDKPFICTMDAIGAKELAKDFVVAGTASESLYGACESMFKPDMFKIEFGLHSRATCKFYRKIDDCTAARQKQQAEKIRHSNRSKGKDFEGKNGLSFKPSDQLLKVHYVFCLILS*

>MsG0780040329.01.T02