Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029895.01.T01 | XP_018829633.1 | 90.361 | 249 | 24 | 0 | 5 | 253 | 1 | 249 | 2.74E-159 | 452 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029895.01.T01 | Q9SXU1 | 93.86 | 228 | 14 | 0 | 5 | 232 | 1 | 228 | 7.60E-160 | 446 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029895.01.T01 | A0A2I4FDB5 | 90.361 | 249 | 24 | 0 | 5 | 253 | 1 | 249 | 1.31e-159 | 452 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0580029892.01 | MsG0580029895.01 | 0.901233 | 3.295890e-78 | 4.411484e-74 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029895.01.T01 | MTR_8g075320 | 93.173 | 249 | 17 | 0 | 5 | 253 | 1 | 249 | 3.43e-161 | 447 |
| MsG0580029895.01.T01 | MTR_2g016050 | 92.771 | 249 | 18 | 0 | 5 | 253 | 1 | 249 | 6.01e-159 | 441 |
| MsG0580029895.01.T01 | MTR_0167s0060 | 38.889 | 234 | 138 | 3 | 6 | 236 | 4 | 235 | 9.53e-54 | 174 |
| MsG0580029895.01.T01 | MTR_7g070070 | 42.500 | 200 | 112 | 3 | 7 | 204 | 4 | 202 | 5.76e-52 | 169 |
| MsG0580029895.01.T01 | MTR_5g016590 | 42.500 | 200 | 112 | 3 | 7 | 204 | 4 | 202 | 1.13e-51 | 169 |
| MsG0580029895.01.T01 | MTR_1g112250 | 43.564 | 202 | 108 | 3 | 6 | 203 | 6 | 205 | 6.35e-50 | 164 |
| MsG0580029895.01.T01 | MTR_8g464460 | 38.397 | 237 | 133 | 6 | 5 | 229 | 1 | 236 | 2.33e-43 | 147 |
| MsG0580029895.01.T01 | MTR_2g060830 | 38.494 | 239 | 130 | 8 | 5 | 229 | 1 | 236 | 6.17e-42 | 144 |
| MsG0580029895.01.T01 | MTR_1g022410 | 36.019 | 211 | 130 | 3 | 6 | 215 | 4 | 210 | 3.01e-36 | 130 |
| MsG0580029895.01.T01 | MTR_6g024135 | 34.104 | 173 | 112 | 1 | 8 | 180 | 8 | 178 | 6.22e-28 | 107 |
| MsG0580029895.01.T01 | MTR_4g012740 | 28.800 | 250 | 133 | 7 | 6 | 215 | 235 | 479 | 1.18e-18 | 85.1 |
| MsG0580029895.01.T01 | MTR_4g057090 | 28.409 | 176 | 117 | 4 | 29 | 200 | 110 | 280 | 1.83e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580029895.01.T01 | AT5G66140 | 88.400 | 250 | 28 | 1 | 5 | 253 | 1 | 250 | 5.47e-153 | 426 |
| MsG0580029895.01.T01 | AT3G51260 | 87.336 | 229 | 28 | 1 | 5 | 232 | 1 | 229 | 8.37e-149 | 416 |
| MsG0580029895.01.T01 | AT3G51260 | 88.679 | 212 | 24 | 0 | 5 | 216 | 1 | 212 | 1.25e-141 | 397 |
| MsG0580029895.01.T01 | AT3G22110 | 43.000 | 200 | 111 | 3 | 7 | 204 | 4 | 202 | 8.73e-53 | 172 |
| MsG0580029895.01.T01 | AT1G16470 | 38.462 | 234 | 139 | 3 | 6 | 236 | 4 | 235 | 9.08e-52 | 169 |
| MsG0580029895.01.T01 | AT1G16470 | 38.462 | 234 | 139 | 3 | 6 | 236 | 4 | 235 | 9.08e-52 | 169 |
| MsG0580029895.01.T01 | AT1G79210 | 38.462 | 234 | 139 | 3 | 6 | 236 | 4 | 235 | 2.16e-51 | 167 |
| MsG0580029895.01.T01 | AT1G79210 | 38.462 | 234 | 139 | 3 | 6 | 236 | 4 | 235 | 2.16e-51 | 167 |
| MsG0580029895.01.T01 | AT1G79210 | 38.462 | 234 | 139 | 3 | 6 | 236 | 4 | 235 | 2.16e-51 | 167 |
| MsG0580029895.01.T01 | AT1G53850 | 40.678 | 236 | 130 | 5 | 6 | 235 | 6 | 237 | 2.78e-51 | 167 |
| MsG0580029895.01.T01 | AT1G53850 | 40.678 | 236 | 130 | 5 | 6 | 235 | 6 | 237 | 2.78e-51 | 167 |
| MsG0580029895.01.T01 | AT3G14290 | 44.059 | 202 | 107 | 3 | 6 | 203 | 6 | 205 | 9.62e-51 | 166 |
| MsG0580029895.01.T01 | AT5G35590 | 38.819 | 237 | 132 | 6 | 5 | 229 | 1 | 236 | 1.41e-43 | 148 |
| MsG0580029895.01.T01 | AT2G05840 | 37.975 | 237 | 134 | 6 | 5 | 229 | 1 | 236 | 1.27e-41 | 143 |
| MsG0580029895.01.T01 | AT2G05840 | 37.615 | 218 | 126 | 4 | 5 | 213 | 1 | 217 | 2.17e-40 | 139 |
| MsG0580029895.01.T01 | AT5G42790 | 34.310 | 239 | 143 | 5 | 6 | 236 | 4 | 236 | 1.95e-38 | 135 |
| MsG0580029895.01.T01 | AT1G47250 | 33.891 | 239 | 144 | 5 | 6 | 236 | 4 | 236 | 2.46e-38 | 135 |
| MsG0580029895.01.T01 | AT2G05840 | 36.598 | 194 | 118 | 3 | 8 | 197 | 9 | 201 | 2.72e-36 | 128 |
| MsG0580029895.01.T01 | AT4G15165 | 35.000 | 200 | 85 | 4 | 7 | 204 | 4 | 160 | 5.14e-33 | 119 |
| MsG0580029895.01.T01 | AT2G27020 | 33.514 | 185 | 120 | 2 | 8 | 191 | 8 | 190 | 2.99e-28 | 108 |
| MsG0580029895.01.T01 | AT2G27020 | 33.514 | 185 | 120 | 2 | 8 | 191 | 110 | 292 | 2.59e-27 | 108 |
Find 67 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACTCGGGCCCGGTTTATA+AGG | 0.275165 | 5:-103589453 | None:intergenic |
| AGTAGTGGTGTGCGGCCATT+TGG | 0.275198 | 5:+103589568 | MsG0580029895.01.T01:CDS |
| GGTGAGGAAGATTGTTAGTT+TGG | 0.281871 | 5:+103589381 | MsG0580029895.01.T01:CDS |
| TGGGCAAGAAACTGTCAAAT+TGG | 0.335063 | 5:+103589750 | MsG0580029895.01.T01:CDS |
| CATGTTGCTCTTGCTTGTGC+TGG | 0.361778 | 5:+103589409 | MsG0580029895.01.T01:CDS |
| GGAGAATGGTCTGCGTCAAC+TGG | 0.398793 | 5:+103590338 | MsG0580029895.01.T01:CDS |
| TACATAACCCGTTACATTGC+AGG | 0.399795 | 5:+103589523 | MsG0580029895.01.T01:CDS |
| TAACCTCGAGTCTTGCAGTT+TGG | 0.402098 | 5:-103588995 | None:intergenic |
| GATTGAACTTGAGTTTCTTC+CGG | 0.402357 | 5:-103589692 | None:intergenic |
| AACCTAGAATCATGTGTCCT+TGG | 0.409440 | 5:-103590439 | None:intergenic |
| CTTCAAGAGCATACTCTACT+TGG | 0.421409 | 5:-103588894 | None:intergenic |
| CTGAAGACCTGCAATGTAAC+GGG | 0.426498 | 5:-103589530 | None:intergenic |
| ATGCTCGTGTCCTTATAAAC+CGG | 0.435736 | 5:+103589443 | MsG0580029895.01.T01:CDS |
| GTAGTGGTGTGCGGCCATTT+GGG | 0.436998 | 5:+103589569 | MsG0580029895.01.T01:CDS |
| ATTAGGTTGTTGAGAGTGGA+GGG | 0.456795 | 5:+103590286 | MsG0580029895.01.T01:intron |
| CGAGTCTTGCAGTTTGGCAG+CGG | 0.458214 | 5:-103588989 | None:intergenic |
| TGTAATTAGGTTGTTGAGAG+TGG | 0.458926 | 5:+103590282 | MsG0580029895.01.T01:intron |
| TCTGGCATTCAACTCGGGCC+CGG | 0.465148 | 5:-103589462 | None:intergenic |
| GCTTGGAAAGCTAACGCAAC+CGG | 0.470438 | 5:+103589673 | MsG0580029895.01.T01:CDS |
| ACCTAGAATCATGTGTCCTT+GGG | 0.476679 | 5:-103590438 | None:intergenic |
| ACTTGGAAGAGATGACCATC+AGG | 0.480914 | 5:-103588877 | None:intergenic |
| GGGCTTTCGACGTTGATCGT+TGG | 0.483437 | 5:+103589589 | MsG0580029895.01.T01:CDS |
| TTGTACCAAACCGACCCTTC+CGG | 0.487764 | 5:+103589640 | MsG0580029895.01.T01:CDS |
| CAACGGTAAGTCTATGACTC+TGG | 0.487875 | 5:-103589480 | None:intergenic |
| AACGCCGCTGTTGGTGTTCG+AGG | 0.495321 | 5:+103588931 | MsG0580029895.01.T01:CDS |
| CGTTGAGGATCCTTGTACTG+TGG | 0.495580 | 5:+103589498 | MsG0580029895.01.T01:CDS |
| CGCTGAGATTGAAGCAGAGA+AGG | 0.501268 | 5:+103590386 | MsG0580029895.01.T01:CDS |
| ATGTACCGGAAGGGTCGGTT+TGG | 0.502119 | 5:-103589645 | None:intergenic |
| CGCAAAGGTAACGCCGCTGT+TGG | 0.503142 | 5:+103588922 | MsG0580029895.01.T01:CDS |
| GGCTATCAGTTCGTTGCTTG+AGG | 0.510114 | 5:+103589771 | MsG0580029895.01.T01:CDS |
| AAGAACTATAAAGACACCTC+TGG | 0.510915 | 5:+103589730 | MsG0580029895.01.T01:CDS |
| AAAGACGGTGACCCGGTGTA+AGG | 0.518981 | 5:-103589619 | None:intergenic |
| AGCAGAGAAGGCAGCTGCTG+AGG | 0.524478 | 5:+103590398 | MsG0580029895.01.T01:CDS |
| ATCAACGTCGAAAGCCCAAA+TGG | 0.525799 | 5:-103589583 | None:intergenic |
| GTTTATAAGGACACGAGCAT+CGG | 0.528829 | 5:-103589440 | None:intergenic |
| ATGACTCTGGCATTCAACTC+GGG | 0.530398 | 5:-103589467 | None:intergenic |
| TATGACTCTGGCATTCAACT+CGG | 0.533537 | 5:-103589468 | None:intergenic |
| GCTGAAGACCTGCAATGTAA+CGG | 0.539298 | 5:-103589531 | None:intergenic |
| AATTAGGTTGTTGAGAGTGG+AGG | 0.542436 | 5:+103590285 | MsG0580029895.01.T01:intron |
| AGTTCTTCTCTAGAAACTCA+CGG | 0.553509 | 5:-103589714 | None:intergenic |
| TGCTCGTGTCCTTATAAACC+GGG | 0.561137 | 5:+103589444 | MsG0580029895.01.T01:CDS |
| TTGACGCAGACCATTCTCCT+TGG | 0.562828 | 5:-103590334 | None:intergenic |
| AGCGGCGTTACCTTTGCGAA+CGG | 0.567249 | 5:-103588917 | None:intergenic |
| AGAACTATAAAGACACCTCT+GGG | 0.578182 | 5:+103589731 | MsG0580029895.01.T01:CDS |
| TTTCCAAGCCGAAAATGTAC+CGG | 0.590468 | 5:-103589659 | None:intergenic |
| TGCTTCAATCTCAGCGACAA+TGG | 0.601944 | 5:-103590379 | None:intergenic |
| AGAAGAATATCAAAATGTCT+CGG | 0.605446 | 5:+103588827 | None:intergenic |
| GTTATGTATTCCACAGTACA+AGG | 0.608705 | 5:-103589508 | None:intergenic |
| GCTGTGATGACCAAGGAGAA+TGG | 0.610505 | 5:+103590324 | MsG0580029895.01.T01:CDS |
| TAGAATCATGTGTCCTTGGG+AGG | 0.611406 | 5:-103590435 | None:intergenic |
| TGCAAAGAAAGTTCCTCCCA+AGG | 0.612392 | 5:+103590422 | MsG0580029895.01.T01:CDS |
| GAATGGTCTGCGTCAACTGG+AGG | 0.615416 | 5:+103590341 | MsG0580029895.01.T01:CDS |
| GCTCTTGAAGCCGTTCGCAA+AGG | 0.618632 | 5:+103588907 | MsG0580029895.01.T01:CDS |
| CAAGCCGAAAATGTACCGGA+AGG | 0.619903 | 5:-103589655 | None:intergenic |
| CGAAAATGTACCGGAAGGGT+CGG | 0.623923 | 5:-103589650 | None:intergenic |
| TTGGTACAAAGACGGTGACC+CGG | 0.625299 | 5:-103589626 | None:intergenic |
| CAAAAGTACACACAGAGTAG+TGG | 0.631460 | 5:+103589553 | MsG0580029895.01.T01:CDS |
| AAGCCGAAAATGTACCGGAA+GGG | 0.641577 | 5:-103589654 | None:intergenic |
| CTGCCAAACTGCAAGACTCG+AGG | 0.647953 | 5:+103588992 | MsG0580029895.01.T01:CDS |
| AGACAACGTCGTTCTCTGCG+TGG | 0.656938 | 5:+103588957 | MsG0580029895.01.T01:CDS |
| GGGTCGGTTTGGTACAAAGA+CGG | 0.662196 | 5:-103589634 | None:intergenic |
| TTTGACAGTTTCTTGCCCAG+AGG | 0.662254 | 5:-103589746 | None:intergenic |
| CACAGTACAAGGATCCTCAA+CGG | 0.666452 | 5:-103589497 | None:intergenic |
| ACACACAGAGTAGTGGTGTG+CGG | 0.698448 | 5:+103589560 | MsG0580029895.01.T01:CDS |
| GAGTCATAGACTTACCGTTG+AGG | 0.701059 | 5:+103589483 | MsG0580029895.01.T01:CDS |
| TGTACCTCGAACACCAACAG+CGG | 0.713203 | 5:-103588935 | None:intergenic |
| TGAAGTTGCTGTGATGACCA+AGG | 0.749955 | 5:+103590317 | MsG0580029895.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAAAAAA+AGG | - | Chr5:103589138-103589157 | None:intergenic | 0.0% |
| !! | AATATATAATATATGGATTT+GGG | + | Chr5:103589322-103589341 | MsG0580029895.01.T01:intron | 10.0% |
| !! | TAATATATAATATATGGATT+TGG | + | Chr5:103589321-103589340 | MsG0580029895.01.T01:intron | 10.0% |
| !! | TGCTTATAATATATAATATA+TGG | + | Chr5:103589315-103589334 | MsG0580029895.01.T01:intron | 10.0% |
| !! | ATTATATATTATAAGCAGTT+TGG | - | Chr5:103589312-103589331 | None:intergenic | 15.0% |
| !! | TAATTATTTGACTGCATATT+AGG | + | Chr5:103590072-103590091 | MsG0580029895.01.T01:intron | 20.0% |
| ! | AATAGTAAAAGACAGATACA+TGG | - | Chr5:103589944-103589963 | None:intergenic | 25.0% |
| ! | ACTTTGCAAAATAAATGCAT+GGG | + | Chr5:103590031-103590050 | MsG0580029895.01.T01:intron | 25.0% |
| ! | GCAGTCAAATAATTATGTTA+AGG | - | Chr5:103590067-103590086 | None:intergenic | 25.0% |
| ! | TACTTTCATAGATTAAAGAC+AGG | - | Chr5:103590186-103590205 | None:intergenic | 25.0% |
| ! | TATATTATAAGCAGTTTGGT+TGG | - | Chr5:103589308-103589327 | None:intergenic | 25.0% |
| ! | TTTCTTGCTAGATGATATAT+AGG | + | Chr5:103589897-103589916 | MsG0580029895.01.T01:intron | 25.0% |
| !! | TATAGGGTAGTATTTTCATT+TGG | + | Chr5:103590248-103590267 | MsG0580029895.01.T01:intron | 25.0% |
| !!! | TTTGCTTTTGTTTTGAAGAT+TGG | + | Chr5:103589360-103589379 | MsG0580029895.01.T01:intron | 25.0% |
| CACTTTGCAAAATAAATGCA+TGG | + | Chr5:103590030-103590049 | MsG0580029895.01.T01:intron | 30.0% | |
| CTTTGCAAAATAAATGCATG+GGG | + | Chr5:103590032-103590051 | MsG0580029895.01.T01:intron | 30.0% | |
| TCAACAACCTAATTACATGT+AGG | - | Chr5:103590279-103590298 | None:intergenic | 30.0% | |
| ! | GGTTTTTCCTACATGTAATT+AGG | + | Chr5:103590269-103590288 | MsG0580029895.01.T01:intron | 30.0% |
| !! | TTATAGTTCTAGTTGAGCAA+CGG | - | Chr5:103589232-103589251 | None:intergenic | 30.0% |
| !!! | TTTTGTTTTGAAGATTGGTG+AGG | + | Chr5:103589365-103589384 | MsG0580029895.01.T01:intron | 30.0% |
| AACTCGATGATCAAGAATTG+AGG | + | Chr5:103589089-103589108 | MsG0580029895.01.T01:intron | 35.0% | |
| AAGAACTATAAAGACACCTC+TGG | + | Chr5:103589730-103589749 | MsG0580029895.01.T01:CDS | 35.0% | |
| AATTCCATGCTAGGTTAATC+TGG | + | Chr5:103589052-103589071 | MsG0580029895.01.T01:intron | 35.0% | |
| AGAACTATAAAGACACCTCT+GGG | + | Chr5:103589731-103589750 | MsG0580029895.01.T01:CDS | 35.0% | |
| CATGCAATAAATTCCATGCT+AGG | + | Chr5:103589043-103589062 | MsG0580029895.01.T01:intron | 35.0% | |
| CTAGCATGGAATTTATTGCA+TGG | - | Chr5:103589045-103589064 | None:intergenic | 35.0% | |
| CTAGGTTAATCTGGATTCTA+GGG | + | Chr5:103589061-103589080 | MsG0580029895.01.T01:intron | 35.0% | |
| GATTGAACTTGAGTTTCTTC+CGG | - | Chr5:103589695-103589714 | None:intergenic | 35.0% | |
| GTTATGTATTCCACAGTACA+AGG | - | Chr5:103589511-103589530 | None:intergenic | 35.0% | |
| ! | AGTTCTTCTCTAGAAACTCA+CGG | - | Chr5:103589717-103589736 | None:intergenic | 35.0% |
| ! | TGTAATTAGGTTGTTGAGAG+TGG | + | Chr5:103590282-103590301 | MsG0580029895.01.T01:intron | 35.0% |
| AGACAGATACATGGAAAGAG+CGG | - | Chr5:103589935-103589954 | None:intergenic | 40.0% | |
| ATGCTCGTGTCCTTATAAAC+CGG | + | Chr5:103589443-103589462 | MsG0580029895.01.T01:CDS | 40.0% | |
| GAATCCAGATTAACCTAGCA+TGG | - | Chr5:103589059-103589078 | None:intergenic | 40.0% | |
| GCAAAATAAATGCATGGGGA+CGG | + | Chr5:103590036-103590055 | MsG0580029895.01.T01:intron | 40.0% | |
| GCTAGGTTAATCTGGATTCT+AGG | + | Chr5:103589060-103589079 | MsG0580029895.01.T01:intron | 40.0% | |
| GGTGAGGAAGATTGTTAGTT+TGG | + | Chr5:103589381-103589400 | MsG0580029895.01.T01:CDS | 40.0% | |
| GTTTATAAGGACACGAGCAT+CGG | - | Chr5:103589443-103589462 | None:intergenic | 40.0% | |
| TACATAACCCGTTACATTGC+AGG | + | Chr5:103589523-103589542 | MsG0580029895.01.T01:CDS | 40.0% | |
| TATGACTCTGGCATTCAACT+CGG | - | Chr5:103589471-103589490 | None:intergenic | 40.0% | |
| TGGGCAAGAAACTGTCAAAT+TGG | + | Chr5:103589750-103589769 | MsG0580029895.01.T01:CDS | 40.0% | |
| TTAAACGCTGAGTGTGACTT+TGG | + | Chr5:103589964-103589983 | MsG0580029895.01.T01:intron | 40.0% | |
| TTTCCAAGCCGAAAATGTAC+CGG | - | Chr5:103589662-103589681 | None:intergenic | 40.0% | |
| ! | AATTAGGTTGTTGAGAGTGG+AGG | + | Chr5:103590285-103590304 | MsG0580029895.01.T01:intron | 40.0% |
| ! | ATCACAGTTTTCTCTCCTGA+TGG | + | Chr5:103588862-103588881 | MsG0580029895.01.T01:CDS | 40.0% |
| ! | ATTAGGTTGTTGAGAGTGGA+GGG | + | Chr5:103590286-103590305 | MsG0580029895.01.T01:intron | 40.0% |
| ! | CAAAAGTACACACAGAGTAG+TGG | + | Chr5:103589553-103589572 | MsG0580029895.01.T01:CDS | 40.0% |
| ! | CTTCAAGAGCATACTCTACT+TGG | - | Chr5:103588897-103588916 | None:intergenic | 40.0% |
| !!! | GTTGGTTTTGATCCTTACAC+CGG | + | Chr5:103589607-103589626 | MsG0580029895.01.T01:CDS | 40.0% |
| !!! | TTGGTTTTGATCCTTACACC+GGG | + | Chr5:103589608-103589627 | MsG0580029895.01.T01:CDS | 40.0% |
| AAGCCGAAAATGTACCGGAA+GGG | - | Chr5:103589657-103589676 | None:intergenic | 45.0% | |
| ACTTGGAAGAGATGACCATC+AGG | - | Chr5:103588880-103588899 | None:intergenic | 45.0% | |
| ATCAACGTCGAAAGCCCAAA+TGG | - | Chr5:103589586-103589605 | None:intergenic | 45.0% | |
| ATGACTCTGGCATTCAACTC+GGG | - | Chr5:103589470-103589489 | None:intergenic | 45.0% | |
| CAACGGTAAGTCTATGACTC+TGG | - | Chr5:103589483-103589502 | None:intergenic | 45.0% | |
| CACAGTACAAGGATCCTCAA+CGG | - | Chr5:103589500-103589519 | None:intergenic | 45.0% | |
| CTGAAGACCTGCAATGTAAC+GGG | - | Chr5:103589533-103589552 | None:intergenic | 45.0% | |
| GAGTCATAGACTTACCGTTG+AGG | + | Chr5:103589483-103589502 | MsG0580029895.01.T01:CDS | 45.0% | |
| GCTGAAGACCTGCAATGTAA+CGG | - | Chr5:103589534-103589553 | None:intergenic | 45.0% | |
| GCTGAGTGTGACTTTGGATT+TGG | + | Chr5:103589970-103589989 | MsG0580029895.01.T01:intron | 45.0% | |
| TAACCTCGAGTCTTGCAGTT+TGG | - | Chr5:103588998-103589017 | None:intergenic | 45.0% | |
| TGAAGTTGCTGTGATGACCA+AGG | + | Chr5:103590317-103590336 | MsG0580029895.01.T01:CDS | 45.0% | |
| TGCAAAGAAAGTTCCTCCCA+AGG | + | Chr5:103590422-103590441 | MsG0580029895.01.T01:CDS | 45.0% | |
| TGCTCGTGTCCTTATAAACC+GGG | + | Chr5:103589444-103589463 | MsG0580029895.01.T01:CDS | 45.0% | |
| TGCTTCAATCTCAGCGACAA+TGG | - | Chr5:103590382-103590401 | None:intergenic | 45.0% | |
| TTTGACAGTTTCTTGCCCAG+AGG | - | Chr5:103589749-103589768 | None:intergenic | 45.0% | |
| ! | GCAACGGAGCATTATACAAC+AGG | - | Chr5:103589216-103589235 | None:intergenic | 45.0% |
| !! | ATTTATATAATACTATTATA+GGG | + | Chr5:103590232-103590251 | MsG0580029895.01.T01:intron | 5.0% |
| !! | TATTTATATAATACTATTAT+AGG | + | Chr5:103590231-103590250 | MsG0580029895.01.T01:intron | 5.0% |
| ACACACAGAGTAGTGGTGTG+CGG | + | Chr5:103589560-103589579 | MsG0580029895.01.T01:CDS | 50.0% | |
| CAAGCCGAAAATGTACCGGA+AGG | - | Chr5:103589658-103589677 | None:intergenic | 50.0% | |
| CATGTTGCTCTTGCTTGTGC+TGG | + | Chr5:103589409-103589428 | MsG0580029895.01.T01:CDS | 50.0% | |
| CGAAAATGTACCGGAAGGGT+CGG | - | Chr5:103589653-103589672 | None:intergenic | 50.0% | |
| CGCTGAGATTGAAGCAGAGA+AGG | + | Chr5:103590386-103590405 | MsG0580029895.01.T01:CDS | 50.0% | |
| CGTTGAGGATCCTTGTACTG+TGG | + | Chr5:103589498-103589517 | MsG0580029895.01.T01:CDS | 50.0% | |
| GCTGTGATGACCAAGGAGAA+TGG | + | Chr5:103590324-103590343 | MsG0580029895.01.T01:CDS | 50.0% | |
| GCTTGGAAAGCTAACGCAAC+CGG | + | Chr5:103589673-103589692 | MsG0580029895.01.T01:CDS | 50.0% | |
| GGCTATCAGTTCGTTGCTTG+AGG | + | Chr5:103589771-103589790 | MsG0580029895.01.T01:CDS | 50.0% | |
| TGTACCTCGAACACCAACAG+CGG | - | Chr5:103588938-103588957 | None:intergenic | 50.0% | |
| TTGACGCAGACCATTCTCCT+TGG | - | Chr5:103590337-103590356 | None:intergenic | 50.0% | |
| TTGGTACAAAGACGGTGACC+CGG | - | Chr5:103589629-103589648 | None:intergenic | 50.0% | |
| TTGTACCAAACCGACCCTTC+CGG | + | Chr5:103589640-103589659 | MsG0580029895.01.T01:CDS | 50.0% | |
| ! | CGACCCTTCCGGTACATTTT+CGG | + | Chr5:103589651-103589670 | MsG0580029895.01.T01:CDS | 50.0% |
| ! | CTTCCGGTACATTTTCGGCT+TGG | + | Chr5:103589656-103589675 | MsG0580029895.01.T01:CDS | 50.0% |
| !! | GGGTCGGTTTGGTACAAAGA+CGG | - | Chr5:103589637-103589656 | None:intergenic | 50.0% |
| AAAGACGGTGACCCGGTGTA+AGG | - | Chr5:103589622-103589641 | None:intergenic | 55.0% | |
| AGACAACGTCGTTCTCTGCG+TGG | + | Chr5:103588957-103588976 | MsG0580029895.01.T01:CDS | 55.0% | |
| AGCGGCGTTACCTTTGCGAA+CGG | - | Chr5:103588920-103588939 | None:intergenic | 55.0% | |
| AGTAGTGGTGTGCGGCCATT+TGG | + | Chr5:103589568-103589587 | MsG0580029895.01.T01:CDS | 55.0% | |
| ATGTACCGGAAGGGTCGGTT+TGG | - | Chr5:103589648-103589667 | None:intergenic | 55.0% | |
| CAACTCGGGCCCGGTTTATA+AGG | - | Chr5:103589456-103589475 | None:intergenic | 55.0% | |
| CGAGTCTTGCAGTTTGGCAG+CGG | - | Chr5:103588992-103589011 | None:intergenic | 55.0% | |
| CTGCCAAACTGCAAGACTCG+AGG | + | Chr5:103588992-103589011 | MsG0580029895.01.T01:CDS | 55.0% | |
| GAATGGTCTGCGTCAACTGG+AGG | + | Chr5:103590341-103590360 | MsG0580029895.01.T01:CDS | 55.0% | |
| GCTCTTGAAGCCGTTCGCAA+AGG | + | Chr5:103588907-103588926 | MsG0580029895.01.T01:CDS | 55.0% | |
| GGAGAATGGTCTGCGTCAAC+TGG | + | Chr5:103590338-103590357 | MsG0580029895.01.T01:CDS | 55.0% | |
| GGGCTTTCGACGTTGATCGT+TGG | + | Chr5:103589589-103589608 | MsG0580029895.01.T01:CDS | 55.0% | |
| GTAGTGGTGTGCGGCCATTT+GGG | + | Chr5:103589569-103589588 | MsG0580029895.01.T01:CDS | 55.0% | |
| AGCAGAGAAGGCAGCTGCTG+AGG | + | Chr5:103590398-103590417 | MsG0580029895.01.T01:CDS | 60.0% | |
| CGCAAAGGTAACGCCGCTGT+TGG | + | Chr5:103588922-103588941 | MsG0580029895.01.T01:CDS | 60.0% | |
| TCTGGCATTCAACTCGGGCC+CGG | - | Chr5:103589465-103589484 | None:intergenic | 60.0% | |
| ! | AACGCCGCTGTTGGTGTTCG+AGG | + | Chr5:103588931-103588950 | MsG0580029895.01.T01:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 103588829 | 103590452 | 103588829 | ID=MsG0580029895.01;Name=MsG0580029895.01 |
| Chr5 | mRNA | 103588829 | 103590452 | 103588829 | ID=MsG0580029895.01.T01;Parent=MsG0580029895.01;Name=MsG0580029895.01.T01;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|253 |
| Chr5 | exon | 103588829 | 103589013 | 103588829 | ID=MsG0580029895.01.T01:exon:15119;Parent=MsG0580029895.01.T01 |
| Chr5 | exon | 103589378 | 103589792 | 103589378 | ID=MsG0580029895.01.T01:exon:15120;Parent=MsG0580029895.01.T01 |
| Chr5 | exon | 103590291 | 103590452 | 103590291 | ID=MsG0580029895.01.T01:exon:15121;Parent=MsG0580029895.01.T01 |
| Chr5 | CDS | 103588829 | 103589013 | 103588829 | ID=MsG0580029895.01.T01:cds;Parent=MsG0580029895.01.T01 |
| Chr5 | CDS | 103589378 | 103589792 | 103589378 | ID=MsG0580029895.01.T01:cds;Parent=MsG0580029895.01.T01 |
| Chr5 | CDS | 103590291 | 103590452 | 103590291 | ID=MsG0580029895.01.T01:cds;Parent=MsG0580029895.01.T01 |
| Gene Sequence |
| Protein sequence |
