AlfalfaGEDB | MsG0680031508.01

M. sativa cultivar ZhongmuNo.1 / MsG0680031508.01

KEGG: K02727
GO: GO:0004175 GO:0004298 GO:0005839 GO:0006511 GO:0019773 GO:0051603
PFAM: PF00227 PF10584

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031508.01.T01	XP_013451443.1	100	249	0	0	1	249	1	249	0	514

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031508.01.T01	O23715	86.747	249	33	0	1	249	1	249	5.41E-167	464

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031508.01.T01	A0A072U8Q5	100.000	249	0	0	1	249	1	249	0.0	514

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0680031508.01	0.879081	1.667096e-69	8.917531e-66
MsG0080048058.01	MsG0680031508.01	0.853127	2.933860e-61	6.272722e-58
MsG0080048383.01	MsG0680031508.01	0.828306	9.675223e-55	9.579314e-52
MsG0180000001.01	MsG0680031508.01	0.878849	2.012158e-69	1.066613e-65
MsG0180000101.01	MsG0680031508.01	0.841536	4.476470e-58	6.597769e-55
MsG0180000135.01	MsG0680031508.01	0.803396	3.556115e-49	1.785111e-46
MsG0180000142.01	MsG0680031508.01	0.818224	2.191780e-52	1.630883e-49
MsG0180000144.01	MsG0680031508.01	0.859482	4.011005e-63	1.060963e-59
MsG0180000146.01	MsG0680031508.01	0.816898	4.362093e-52	3.129996e-49
MsG0180000195.01	MsG0680031508.01	0.824942	6.138693e-54	5.517241e-51

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PPI

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Gene1	Gene2	Type
MsG0180006029.01	MsG0680031508.01	PPI
MsG0180006029.01	MsG0680031508.01	PPI
MsG0280009575.01	MsG0680031508.01	PPI
MsG0280009575.01	MsG0680031508.01	PPI
MsG0280011059.01	MsG0680031508.01	PPI
MsG0380017881.01	MsG0680031508.01	PPI
MsG0580024181.01	MsG0680031508.01	PPI
MsG0580024792.01	MsG0680031508.01	PPI
MsG0580029890.01	MsG0680031508.01	PPI
MsG0580029892.01	MsG0680031508.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031508.01.T01	MTR_6g024135	100.000	249	0	0	1	249	1	249	0.0	514
MsG0680031508.01.T01	MTR_0167s0060	36.612	183	116	0	8	190	6	188	4.78e-39	135
MsG0680031508.01.T01	MTR_1g022410	40.838	191	108	3	8	196	6	193	1.22e-38	136
MsG0680031508.01.T01	MTR_1g112250	34.783	207	120	2	6	203	6	206	4.58e-38	133
MsG0680031508.01.T01	MTR_7g070070	35.071	211	135	2	8	216	5	215	9.82e-38	133
MsG0680031508.01.T01	MTR_5g016590	35.071	211	135	2	8	216	5	215	2.16e-37	132
MsG0680031508.01.T01	MTR_8g464460	36.932	176	109	2	5	178	6	181	2.63e-32	119
MsG0680031508.01.T01	MTR_2g060830	35.227	176	112	2	5	178	6	181	3.12e-32	118
MsG0680031508.01.T01	MTR_8g075320	35.260	173	110	1	8	178	4	176	1.66e-29	111
MsG0680031508.01.T01	MTR_2g016050	35.260	173	110	1	8	178	4	176	5.11e-28	107

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0680031508.01.T01	AT2G27020	86.747	249	33	0	1	249	1	249	5.52e-168	464
MsG0680031508.01.T01	AT2G27020	86.747	249	33	0	1	249	103	351	1.27e-166	464
MsG0680031508.01.T01	AT1G47250	42.105	171	97	1	8	178	6	174	7.05e-39	136
MsG0680031508.01.T01	AT1G16470	34.146	205	134	1	8	211	6	210	7.06e-39	135
MsG0680031508.01.T01	AT1G16470	34.146	205	134	1	8	211	6	210	7.06e-39	135
MsG0680031508.01.T01	AT1G79210	34.146	205	134	1	8	211	6	210	8.29e-39	135
MsG0680031508.01.T01	AT1G79210	34.146	205	134	1	8	211	6	210	8.29e-39	135
MsG0680031508.01.T01	AT1G79210	34.146	205	134	1	8	211	6	210	8.29e-39	135
MsG0680031508.01.T01	AT5G42790	42.105	171	97	1	8	178	6	174	1.17e-38	136
MsG0680031508.01.T01	AT3G14290	34.783	207	120	2	6	203	6	206	3.71e-38	134

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Find 77 sgRNAs with CRISPR-Local

Find 259 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAAGTACCATTCCAGAG+TGG	0.731365	6:+21315441	None:intergenic
AACATCTATAGAAATTTCAT+AGG	0.456369	6:-21312465	MsG0680031508.01.T01:three_prime_UTR
AACGGCGTGAATTCTTCTAT+TGG	0.385310	6:+21315469	None:intergenic
AACTTGTAATAGAGAGCATT+GGG	0.446785	6:-21312488	MsG0680031508.01.T01:three_prime_UTR
AAGTTATGAAATGCATCTTT+GGG	0.358865	6:+21312506	None:intergenic
ACCTCTGCACATTATACTGG+TGG	0.589474	6:-21314100	MsG0680031508.01.T01:CDS
AGATGGACCACAGTTGTACA+TGG	0.581771	6:-21313942	MsG0680031508.01.T01:CDS
AGCTAATTTAGCTGCTGTCT+TGG	0.430728	6:+21312571	None:intergenic
AGTATGACACCACATCCAAA+AGG	0.565132	6:+21313980	None:intergenic
AGTTGCTTCGGACTTAGCCC+TGG	0.513490	6:+21314734	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGTAATAGTTGCAAGCAAA+TGG	+	Chr6:21314405-21314424	None:intergenic	30.0%
AGAAACTGTTAGGAAAGATT+TGG	-	Chr6:21312900-21312919	MsG0680031508.01.T01:intron	30.0%
ATAACTTGAAATAGAGGTGA+AGG	-	Chr6:21314683-21314702	MsG0680031508.01.T01:intron	30.0%
ATTAATTGCTAGTGTTGTAG+TGG	-	Chr6:21313787-21313806	MsG0680031508.01.T01:intron	30.0%
CAAGTTATGAAATGCATCTT+TGG	+	Chr6:21316593-21316612	None:intergenic	30.0%
GACGTATATATTGTGTAGTA+AGG	-	Chr6:21312813-21312832	MsG0680031508.01.T01:intron	30.0%
GGTTTCTTGAAACTTGAAAT+AGG	-	Chr6:21314704-21314723	MsG0680031508.01.T01:intron	30.0%
TAAGAGTGAAAGATTGTGAA+GGG	-	Chr6:21313829-21313848	MsG0680031508.01.T01:intron	30.0%
TCAAACAGATGAAACAAATG+TGG	+	Chr6:21316287-21316306	None:intergenic	30.0%
TCTTGTTACTGTCTTTCATT+TGG	-	Chr6:21313697-21313716	MsG0680031508.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr6	gene	21312265	21316852	21312265	ID=MsG0680031508.01;Name=MsG0680031508.01
Chr6	mRNA	21312265	21316852	21312265	ID=MsG0680031508.01.T01;Parent=MsG0680031508.01;Name=MsG0680031508.01.T01;_AED=0.49;_eAED=0.49;_QI=104\|1\|1\|1\|1\|1\|10\|282\|249
Chr6	exon	21312265	21312618	21312265	ID=MsG0680031508.01.T01:exon:13506;Parent=MsG0680031508.01.T01
Chr6	exon	21312952	21313042	21312952	ID=MsG0680031508.01.T01:exon:13505;Parent=MsG0680031508.01.T01
Chr6	exon	21313141	21313206	21313141	ID=MsG0680031508.01.T01:exon:13504;Parent=MsG0680031508.01.T01
Chr6	exon	21313752	21313798	21313752	ID=MsG0680031508.01.T01:exon:13503;Parent=MsG0680031508.01.T01
Chr6	exon	21313919	21314003	21313919	ID=MsG0680031508.01.T01:exon:13502;Parent=MsG0680031508.01.T01
Chr6	exon	21314095	21314181	21314095	ID=MsG0680031508.01.T01:exon:13501;Parent=MsG0680031508.01.T01
Chr6	exon	21314723	21314796	21314723	ID=MsG0680031508.01.T01:exon:13500;Parent=MsG0680031508.01.T01
Chr6	exon	21315451	21315534	21315451	ID=MsG0680031508.01.T01:exon:13499;Parent=MsG0680031508.01.T01
Chr6	exon	21315630	21315669	21315630	ID=MsG0680031508.01.T01:exon:13498;Parent=MsG0680031508.01.T01
Chr6	exon	21316645	21316852	21316645	ID=MsG0680031508.01.T01:exon:13497;Parent=MsG0680031508.01.T01
Chr6	five_prime_UTR	21316749	21316852	21316749	ID=MsG0680031508.01.T01:five_prime_utr;Parent=MsG0680031508.01.T01
Chr6	CDS	21316645	21316748	21316645	ID=MsG0680031508.01.T01:cds;Parent=MsG0680031508.01.T01
Chr6	CDS	21315630	21315669	21315630	ID=MsG0680031508.01.T01:cds;Parent=MsG0680031508.01.T01
Chr6	CDS	21315451	21315534	21315451	ID=MsG0680031508.01.T01:cds;Parent=MsG0680031508.01.T01
Chr6	CDS	21314723	21314796	21314723	ID=MsG0680031508.01.T01:cds;Parent=MsG0680031508.01.T01
Chr6	CDS	21314095	21314181	21314095	ID=MsG0680031508.01.T01:cds;Parent=MsG0680031508.01.T01
Chr6	CDS	21313919	21314003	21313919	ID=MsG0680031508.01.T01:cds;Parent=MsG0680031508.01.T01
Chr6	CDS	21313752	21313798	21313752	ID=MsG0680031508.01.T01:cds;Parent=MsG0680031508.01.T01
Chr6	CDS	21313141	21313206	21313141	ID=MsG0680031508.01.T01:cds;Parent=MsG0680031508.01.T01
Chr6	CDS	21312952	21313042	21312952	ID=MsG0680031508.01.T01:cds;Parent=MsG0680031508.01.T01
Chr6	CDS	21312547	21312618	21312547	ID=MsG0680031508.01.T01:cds;Parent=MsG0680031508.01.T01
Chr6	three_prime_UTR	21312265	21312546	21312265	ID=MsG0680031508.01.T01:three_prime_utr;Parent=MsG0680031508.01.T01

Gene Sequence

>MsG0680031508.01.T01

ATGAGTAGCATTGGAACAGGCTACGATCTATCCGTCACTACTTTCTCTCCTGATGGCCGCGTTTTCCAGATCGAATATGCTGCCAAAGCTGTCGACAATAGTGGGACTGTTATTGGGATCAGATGCAAAGATGGAATTGTTTTGGGTGTCGAGAAGCTTATCCCTTCGAAAATGATGCTTTCGGGTTCCAATAGAAGAATTCACGCCGTTCATCGCCACTCTGGAATGGCTGTAGCAGGATTAGCTGCAGATGGAAGGCAAATTGTTGCCAGGGCTAAGTCCGAAGCAACTAACTACGACAGTGTGTATGGTGATCCAATTCCTGTCAAGGAACTTGCTGATCGCGTGGCCAGTTACGTGCACCTCTGCACATTATACTGGTGGCTCAGACCTTTTGGATGTGGTGTCATACTAGGTGGTTACGACAGAGATGGACCACAGTTGTACATGGTTGAACCTTCTGGTGTCTCTTATAGGTATTTTGGTGCTGCAATCGGGAAGGGCAGACAGGCTGCGAAAACGGAGATTGAAAAGTTGAAGCTTGCGGATATGACCTGCCGACAAGGTGTTATTGAAGTAGCTAAGATTATATATGGAGTTCATGACGAGGCAAAGGATAAAGATTTCGAACTCGAAATGAGCTGGGTGTGCGATGAATCAAACCGTCAACATGAAAAGGTTCCAGAGGAGCTTCTAGAAGAAGCCAAGACAGCAGCTAAATTAGCTCTCGAAGAAATGGATGCAGATTAA

Protein sequence

>MsG0680031508.01.T01

MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIRCKDGIVLGVEKLIPSKMMLSGSNRRIHAVHRHSGMAVAGLAADGRQIVARAKSEATNYDSVYGDPIPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMVEPSGVSYRYFGAAIGKGRQAAKTEIEKLKLADMTCRQGVIEVAKIIYGVHDEAKDKDFELEMSWVCDESNRQHEKVPEELLEEAKTAAKLALEEMDAD*