AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045615.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045615.01.T01 MTR_8g075320 99.598 249 1 0 1 249 1 249 0.0 509
MsG0880045615.01.T01 MTR_2g016050 91.667 228 19 0 1 228 1 228 8.11e-157 436
MsG0880045615.01.T01 MTR_7g070070 42.500 200 112 3 3 200 4 202 3.95e-53 172
MsG0880045615.01.T01 MTR_0167s0060 38.462 234 139 3 2 232 4 235 5.15e-53 171
MsG0880045615.01.T01 MTR_5g016590 42.500 200 112 3 3 200 4 202 7.80e-53 172
MsG0880045615.01.T01 MTR_1g112250 40.171 234 130 5 4 231 8 237 6.86e-51 166
MsG0880045615.01.T01 MTR_8g464460 38.428 229 133 5 4 225 9 236 3.48e-42 144
MsG0880045615.01.T01 MTR_2g060830 39.394 231 128 7 4 225 9 236 9.86e-42 143
MsG0880045615.01.T01 MTR_1g022410 37.736 212 123 4 3 211 5 210 3.17e-37 132
MsG0880045615.01.T01 MTR_6g024135 35.260 173 110 1 4 176 8 178 2.14e-29 111
MsG0880045615.01.T01 MTR_4g012740 28.685 251 130 6 3 211 236 479 4.77e-19 86.3
MsG0880045615.01.T01 MTR_4g057090 29.545 176 115 4 25 196 110 280 1.41e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045615.01.T01 AT5G66140 90.400 250 23 1 1 249 1 250 4.51e-156 434
MsG0880045615.01.T01 AT3G51260 89.956 229 22 1 1 228 1 229 4.77e-153 426
MsG0880045615.01.T01 AT3G51260 91.509 212 18 0 1 212 1 212 4.65e-146 408
MsG0880045615.01.T01 AT3G22110 43.000 200 111 3 3 200 4 202 5.02e-54 175
MsG0880045615.01.T01 AT1G53850 41.453 234 127 5 4 231 8 237 3.16e-52 170
MsG0880045615.01.T01 AT1G53850 41.453 234 127 5 4 231 8 237 3.16e-52 170
MsG0880045615.01.T01 AT3G14290 42.035 226 123 4 4 223 8 231 1.21e-51 168
MsG0880045615.01.T01 AT1G16470 38.462 234 139 3 2 232 4 235 2.02e-51 167
MsG0880045615.01.T01 AT1G16470 38.462 234 139 3 2 232 4 235 2.02e-51 167
MsG0880045615.01.T01 AT1G79210 38.462 234 139 3 2 232 4 235 3.08e-51 167
MsG0880045615.01.T01 AT1G79210 38.462 234 139 3 2 232 4 235 3.08e-51 167
MsG0880045615.01.T01 AT1G79210 38.462 234 139 3 2 232 4 235 3.08e-51 167
MsG0880045615.01.T01 AT5G35590 38.627 233 133 4 2 230 7 233 1.15e-43 148
MsG0880045615.01.T01 AT2G05840 38.961 231 133 5 2 225 7 236 6.04e-42 144
MsG0880045615.01.T01 AT2G05840 38.679 212 125 3 2 209 7 217 3.16e-41 141
MsG0880045615.01.T01 AT1G47250 35.714 238 139 5 3 232 5 236 1.65e-39 138
MsG0880045615.01.T01 AT5G42790 35.294 238 140 5 3 232 5 236 3.50e-38 135
MsG0880045615.01.T01 AT2G05840 38.144 194 115 3 2 191 7 199 2.20e-37 130
MsG0880045615.01.T01 AT4G15165 34.500 200 86 4 3 200 4 160 2.70e-33 120
MsG0880045615.01.T01 AT2G27020 34.054 185 119 2 4 187 8 190 5.69e-30 112
MsG0880045615.01.T01 AT2G27020 34.054 185 119 2 4 187 110 292 1.04e-28 111

Find 73 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAAAGAAAATCATGTCTT+AGG 0.184272 8:+61771896 None:intergenic
AATCATGTCTTAGGGTTTCT+TGG 0.243512 8:+61771905 None:intergenic
CACATTGCTCTTGCTTGTGC+TGG 0.248856 8:-61773497 MsG0880045615.01.T01:CDS
AGTGGTGGTGTGCGGCCATT+TGG 0.286590 8:-61773338 MsG0880045615.01.T01:CDS
AGCTCATGAATTGTTCTTGC+TGG 0.297295 8:-61771866 MsG0880045615.01.T01:three_prime_UTR
TGTTTCAATCTCAGATTTGT+TGG 0.322393 8:+61771949 None:intergenic
CCGCTAAGCTTCAAGATTCT+AGG 0.333653 8:-61774170 MsG0880045615.01.T01:intron
AGAGAAAGCTTGGTTCGATT+TGG 0.337269 8:-61774387 MsG0880045615.01.T01:five_prime_UTR
TGTTCTTGCTGGGTGACTTA+AGG 0.372614 8:-61771855 MsG0880045615.01.T01:three_prime_UTR
CAACAGTGAGCCTGTGACTC+TGG 0.389890 8:+61773426 None:intergenic
TAAAATCATGTGTCCTTAAG+AGG 0.395220 8:+61772034 None:intergenic
GTGGTGGTGTGCGGCCATTT+GGG 0.402302 8:-61773337 MsG0880045615.01.T01:CDS
ATGCTCGTGTCTTGATAAAC+CGG 0.411856 8:-61773463 MsG0880045615.01.T01:CDS
GGAGCACGGTCTGCGTCAAT+TGG 0.423486 8:-61772131 MsG0880045615.01.T01:CDS
GGGCTTTCCACTTTGATCGT+TGG 0.425251 8:-61773317 MsG0880045615.01.T01:CDS
CTGTACCAGACAGATCCTTC+TGG 0.439894 8:-61773266 MsG0880045615.01.T01:CDS
AGGGTTTCTTGGATAGCCTC+AGG 0.452414 8:+61771916 None:intergenic
AGAAAGAGAAAGAGAAAGCT+TGG 0.455419 8:-61774397 MsG0880045615.01.T01:five_prime_UTR
TTATTGTTTAAGTTCGCAAA+TGG 0.459378 8:-61771800 MsG0880045615.01.T01:three_prime_UTR
GCTCATGAATTGTTCTTGCT+GGG 0.460096 8:-61771865 MsG0880045615.01.T01:three_prime_UTR
ATAAAGAAAATCATGTCTTA+GGG 0.462004 8:+61771897 None:intergenic
GGTATCGATAACGTCGTTCT+CGG 0.466383 8:-61774210 MsG0880045615.01.T01:CDS
ACATTGCTCTTGCTTGTGCT+GGG 0.466582 8:-61773496 MsG0880045615.01.T01:CDS
AGTACGCTCTAGAAGCTGTT+AGG 0.467619 8:-61774260 MsG0880045615.01.T01:CDS
TGCAAAGAAAGCTCCTCTTA+AGG 0.470575 8:-61772047 MsG0880045615.01.T01:CDS
TGGTTCGATTTGGTTTGAAT+CGG 0.472139 8:-61774377 MsG0880045615.01.T01:five_prime_UTR
TCTGGCATTCAACGCGTGCC+CGG 0.479291 8:+61773444 None:intergenic
AACGCCGCCGTCGGTGTTCG+CGG 0.483392 8:-61774231 MsG0880045615.01.T01:CDS
TTTGAATCGGAAAAGGTTGA+AGG 0.484018 8:-61774364 MsG0880045615.01.T01:five_prime_UTR
AGAGAGGGAGACCCGGTGTA+AGG 0.485987 8:+61773287 None:intergenic
GATTTGGTTTGAATCGGAAA+AGG 0.489383 8:-61774371 MsG0880045615.01.T01:five_prime_UTR
GCATGGAAGGCAAATGCCAC+TGG 0.502242 8:-61773233 MsG0880045615.01.T01:CDS
CGCTCTAGAAGCTGTTAGGA+AGG 0.506646 8:-61774256 MsG0880045615.01.T01:CDS
ATCAAAGTGGAAAGCCCAAA+TGG 0.511316 8:+61773323 None:intergenic
TGGACAGGAAACTGTGAAGT+TGG 0.514356 8:-61773156 MsG0880045615.01.T01:CDS
GCGTTGAATGCCAGAGTCAC+AGG 0.514781 8:-61773436 MsG0880045615.01.T01:CDS
CCTAGAATCTTGAAGCTTAG+CGG 0.516530 8:+61774170 None:intergenic
GCTGGAGACCAGCTATGTAC+CGG 0.520483 8:+61773375 None:intergenic
AACTCACTTCAAGCAAAGCT+CGG 0.527308 8:+61773129 None:intergenic
TGTAATTAGGTTGTCGAGAG+TGG 0.529328 8:-61772187 MsG0880045615.01.T01:intron
TATATTACCCGGTACATAGC+TGG 0.536354 8:-61773383 MsG0880045615.01.T01:CDS
ATCGATACCGCGAACACCGA+CGG 0.539173 8:+61774224 None:intergenic
AGCAGAGAAAGCAGCTGCTG+AGG 0.545135 8:-61772071 MsG0880045615.01.T01:CDS
ATGTACCAGAAGGATCTGTC+TGG 0.549205 8:+61773261 None:intergenic
GCACGGTCTGCGTCAATTGG+AGG 0.557429 8:-61772128 MsG0880045615.01.T01:CDS
ACGTAAGCATCTGTAGGCGT+TGG 0.561981 8:-61772002 MsG0880045615.01.T01:three_prime_UTR
GTTGGCTTTGATCCTTACAC+CGG 0.563925 8:-61773299 MsG0880045615.01.T01:CDS
GTAATATACTCCACAGTGCA+TGG 0.569706 8:+61773398 None:intergenic
AGCTGAAATTGATGCTATTG+TGG 0.570222 8:-61772104 MsG0880045615.01.T01:CDS
AGGAAGGGTAACGCCGCCGT+CGG 0.581917 8:-61774240 MsG0880045615.01.T01:CDS
TTCTTTACGTAAGCATCTGT+AGG 0.582450 8:-61772008 MsG0880045615.01.T01:three_prime_UTR
CGAATTCGAGTTTCTGCCAG+TGG 0.583434 8:+61773217 None:intergenic
CTGGTACAGAGAGGGAGACC+CGG 0.593324 8:+61773280 None:intergenic
GGATCTGTCTGGTACAGAGA+GGG 0.600904 8:+61773272 None:intergenic
CATGCTGAAAATGTACCAGA+AGG 0.601249 8:+61773251 None:intergenic
CTGGAGACCAGCTATGTACC+GGG 0.601992 8:+61773376 None:intergenic
CAGCAAAAGTACACGCAAAG+TGG 0.610161 8:-61773356 MsG0880045615.01.T01:CDS
TGAAGTTGCTGTGATGACTA+AGG 0.614312 8:-61772152 MsG0880045615.01.T01:CDS
CTTCACAGTTTCCTGTCCAG+AGG 0.615209 8:+61773160 None:intergenic
AATTAGGTTGTCGAGAGTGG+TGG 0.616154 8:-61772184 MsG0880045615.01.T01:intron
TGCTCGTGTCTTGATAAACC+GGG 0.619876 8:-61773462 MsG0880045615.01.T01:CDS
ACACGCAAAGTGGTGGTGTG+CGG 0.627734 8:-61773346 MsG0880045615.01.T01:CDS
AGAATCTTGAAGCTTAGCGG+TGG 0.631552 8:+61774173 None:intergenic
ATCAAAGCCAACGATCAAAG+TGG 0.632918 8:+61773310 None:intergenic
TTGGCTTTGATCCTTACACC+GGG 0.640792 8:-61773298 MsG0880045615.01.T01:CDS
CAAAAGTACACGCAAAGTGG+TGG 0.643467 8:-61773353 MsG0880045615.01.T01:CDS
GCTCTAGAAGCTGTTAGGAA+GGG 0.668408 8:-61774255 MsG0880045615.01.T01:CDS
AGGATCTGTCTGGTACAGAG+AGG 0.675221 8:+61773271 None:intergenic
GCACTGTGGAGTATATTACC+CGG 0.676466 8:-61773394 MsG0880045615.01.T01:CDS
GCTGTGATGACTAAGGAGCA+CGG 0.689211 8:-61772145 MsG0880045615.01.T01:CDS
GAAACACAGAAGAACTCCTG+AGG 0.709715 8:-61771932 MsG0880045615.01.T01:three_prime_UTR
GATACCGCGAACACCGACGG+CGG 0.718572 8:+61774227 None:intergenic
TGTTGAAGATCCATGCACTG+TGG 0.770043 8:-61773408 MsG0880045615.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATATTATAAGCAGTA+TGG + Chr8:61772544-61772563 None:intergenic 15.0%
!! ATTCTATCATTCATTTATAT+AGG - Chr8:61773075-61773094 MsG0880045615.01.T01:intron 15.0%
!!! AATATAATGTAAAATGGATT+TGG - Chr8:61772559-61772578 MsG0880045615.01.T01:intron 15.0%
!!! ATATAATGTAAAATGGATTT+GGG - Chr8:61772560-61772579 MsG0880045615.01.T01:intron 15.0%
!!! TAAAAAGTAATGAAAAGTTT+TGG + Chr8:61773763-61773782 None:intergenic 15.0%
!! AGAAGCTATTTGTTTATATA+CGG - Chr8:61772449-61772468 MsG0880045615.01.T01:intron 20.0%
!! ATAAAGAAAATCATGTCTTA+GGG + Chr8:61774249-61774268 None:intergenic 20.0%
!! CTCAAATGAATGTTTAAAAA+GGG + Chr8:61773428-61773447 None:intergenic 20.0%
!! GCTATATAAAAAAAGAACTA+TGG + Chr8:61772503-61772522 None:intergenic 20.0%
!! TATAAAGAAAATCATGTCTT+AGG + Chr8:61774250-61774269 None:intergenic 20.0%
!! TCTCAAATGAATGTTTAAAA+AGG + Chr8:61773429-61773448 None:intergenic 20.0%
!! TCTGATAAATACTTTACATT+TGG - Chr8:61773915-61773934 MsG0880045615.01.T01:intron 20.0%
!! TGTACATTCAAACATTATAA+TGG - Chr8:61773812-61773831 MsG0880045615.01.T01:intron 20.0%
!!! ACTTGTTTTATATTTGGAAT+TGG - Chr8:61773891-61773910 MsG0880045615.01.T01:intron 20.0%
!!! CTAGTAACTTGTTTTATATT+TGG - Chr8:61773885-61773904 MsG0880045615.01.T01:intron 20.0%
!!! TGATTTTCATTTCTCAAATT+CGG - Chr8:61772032-61772051 MsG0880045615.01.T01:exon 20.0%
!!! TTTTTTTTGCTAGAAGATAT+AGG - Chr8:61773112-61773131 MsG0880045615.01.T01:intron 20.0%
! CAAATTCCAAACAAATTTCT+AGG + Chr8:61772117-61772136 None:intergenic 25.0%
! GAAGAAAAAGAAAATCACAA+TGG - Chr8:61771803-61771822 MsG0880045615.01.T01:three_prime_UTR 25.0%
! GAAGCTATTTGTTTATATAC+GGG - Chr8:61772450-61772469 MsG0880045615.01.T01:intron 25.0%
! GCATAACTGTAATACTATTA+TGG - Chr8:61773861-61773880 MsG0880045615.01.T01:intron 25.0%
! GTGTTAGAAAGATATTCATA+CGG - Chr8:61773304-61773323 MsG0880045615.01.T01:CDS 25.0%
! TATGAATATCTTTCTAACAC+AGG + Chr8:61773304-61773323 None:intergenic 25.0%
! TCATTTATATAGGAATTTGC+AGG - Chr8:61773085-61773104 MsG0880045615.01.T01:intron 25.0%
! TTAGAATCTTAGATCTAGTT+TGG - Chr8:61772261-61772280 MsG0880045615.01.T01:intron 25.0%
!! AAAATACCAATAAGCTTGTT+CGG + Chr8:61772360-61772379 None:intergenic 25.0%
!! ATGACTCCTTTAATTGTTTT+TGG - Chr8:61774311-61774330 MsG0880045615.01.T01:CDS 25.0%
!! CTTTATCCTAGAAATTTGTT+TGG - Chr8:61772108-61772127 MsG0880045615.01.T01:CDS 25.0%
!! TAGATCTAGTTTGGAAATAA+GGG - Chr8:61772270-61772289 MsG0880045615.01.T01:intron 25.0%
!! TTAGATCTAGTTTGGAAATA+AGG - Chr8:61772269-61772288 MsG0880045615.01.T01:intron 25.0%
!! TTATTGTTTAAGTTCGCAAA+TGG - Chr8:61774343-61774362 MsG0880045615.01.T01:exon 25.0%
!!! AATTCTTTTCTAGAAACTCA+CGG + Chr8:61772954-61772973 None:intergenic 25.0%
!!! GGCAATTTAATTTTGAGATT+GGG - Chr8:61772216-61772235 MsG0880045615.01.T01:intron 25.0%
!!! TCATTTTGCTTTTATTTTGC+AGG - Chr8:61772593-61772612 MsG0880045615.01.T01:intron 25.0%
!!! TGACTCCTTTAATTGTTTTT+GGG - Chr8:61774312-61774331 MsG0880045615.01.T01:CDS 25.0%
!!! TGGCAATTTAATTTTGAGAT+TGG - Chr8:61772215-61772234 MsG0880045615.01.T01:intron 25.0%
AGAATCATTTGACTGCAATT+AGG - Chr8:61773258-61773277 MsG0880045615.01.T01:CDS 30.0%
AGATATTCATACGGTTAATC+TGG - Chr8:61773313-61773332 MsG0880045615.01.T01:CDS 30.0%
CATGACCCAAAAACAATTAA+AGG + Chr8:61774320-61774339 None:intergenic 30.0%
GATATTCATACGGTTAATCT+GGG - Chr8:61773314-61773333 MsG0880045615.01.T01:CDS 30.0%
TAAAATCATGTGTCCTTAAG+AGG + Chr8:61774112-61774131 None:intergenic 30.0%
TAGTATTACAGTTATGCAAC+AGG + Chr8:61773858-61773877 None:intergenic 30.0%
TGTTTCAATCTCAGATTTGT+TGG + Chr8:61774197-61774216 None:intergenic 30.0%
TTCTGATTGTTGATCAACAT+AGG - Chr8:61773459-61773478 MsG0880045615.01.T01:CDS 30.0%
TTTATGATATTCCTAGCTGA+TGG - Chr8:61773779-61773798 MsG0880045615.01.T01:intron 30.0%
! AGATGTGAAGTAATTTGCAT+CGG - Chr8:61772185-61772204 MsG0880045615.01.T01:intron 30.0%
! CTTTTGCAGTATAATTATCG+TGG - Chr8:61773559-61773578 MsG0880045615.01.T01:intron 30.0%
! GCAGTCAAATGATTCTTTTA+AGG + Chr8:61773254-61773273 None:intergenic 30.0%
!! AAGAATTTTAAAGAGACCTC+TGG - Chr8:61772967-61772986 MsG0880045615.01.T01:intron 30.0%
AATCATGTCTTAGGGTTTCT+TGG + Chr8:61774241-61774260 None:intergenic 35.0%
ACTTGAAAAAGATGACCATC+GGG + Chr8:61771861-61771880 None:intergenic 35.0%
AGAAAGAGAAAGAGAAAGCT+TGG - Chr8:61771746-61771765 MsG0880045615.01.T01:three_prime_UTR 35.0%
AGCTGAAATTGATGCTATTG+TGG - Chr8:61774039-61774058 MsG0880045615.01.T01:intron 35.0%
ATCATTTGACTGCAATTAGG+AGG - Chr8:61773261-61773280 MsG0880045615.01.T01:CDS 35.0%
CTTAAATCCTGCTATGAACT+GGG - Chr8:61773384-61773403 MsG0880045615.01.T01:CDS 35.0%
GACTTGAAAAAGATGACCAT+CGG + Chr8:61771862-61771881 None:intergenic 35.0%
GTTGATCAACAATCAGAAAG+AGG + Chr8:61773457-61773476 None:intergenic 35.0%
TCATAGCAGGATTTAAGGAA+TGG + Chr8:61773381-61773400 None:intergenic 35.0%
TTCTTTACGTAAGCATCTGT+AGG - Chr8:61774135-61774154 MsG0880045615.01.T01:intron 35.0%
TTTGAATCGGAAAAGGTTGA+AGG - Chr8:61771779-61771798 MsG0880045615.01.T01:three_prime_UTR 35.0%
! GTGTTAGGTTTAGGATCTTA+GGG - Chr8:61772054-61772073 MsG0880045615.01.T01:CDS 35.0%
! TAATTTGCATCGGAGTGTAT+TGG - Chr8:61772195-61772214 MsG0880045615.01.T01:intron 35.0%
!! CATTTCTCAAATTCGGTGTT+AGG - Chr8:61772039-61772058 MsG0880045615.01.T01:CDS 35.0%
!! GATTTGGTTTGAATCGGAAA+AGG - Chr8:61771772-61771791 MsG0880045615.01.T01:three_prime_UTR 35.0%
!! TCAAATTCGGTGTTAGGTTT+AGG - Chr8:61772045-61772064 MsG0880045615.01.T01:CDS 35.0%
!! TGGTTCGATTTGGTTTGAAT+CGG - Chr8:61771766-61771785 MsG0880045615.01.T01:three_prime_UTR 35.0%
!!! TACATTTGGCTTTTCCTTGT+CGG - Chr8:61773929-61773948 MsG0880045615.01.T01:intron 35.0%
AACTCACTTCAAGCAAAGCT+CGG + Chr8:61773017-61773036 None:intergenic 40.0%
AAGCTTCAAGATTCTAGGTC+TGG - Chr8:61771978-61771997 MsG0880045615.01.T01:three_prime_UTR 40.0%
AGCTCATGAATTGTTCTTGC+TGG - Chr8:61774277-61774296 MsG0880045615.01.T01:CDS 40.0%
ATCAAAGCCAACGATCAAAG+TGG + Chr8:61772836-61772855 None:intergenic 40.0%
ATCAAAGTGGAAAGCCCAAA+TGG + Chr8:61772823-61772842 None:intergenic 40.0%
ATGCTCGTGTCTTGATAAAC+CGG - Chr8:61772680-61772699 MsG0880045615.01.T01:intron 40.0%
ATTCCTAGCTGATGGTTGTA+TGG - Chr8:61773787-61773806 MsG0880045615.01.T01:intron 40.0%
CAAAGACCGAACAAGCTTAT+TGG - Chr8:61772351-61772370 MsG0880045615.01.T01:intron 40.0%
CATGCTGAAAATGTACCAGA+AGG + Chr8:61772895-61772914 None:intergenic 40.0%
CCAGTTCATAGCAGGATTTA+AGG + Chr8:61773386-61773405 None:intergenic 40.0%
CCTAATTACACATACCGACA+AGG + Chr8:61773946-61773965 None:intergenic 40.0%
CCTAGAATCTTGAAGCTTAG+CGG + Chr8:61771976-61771995 None:intergenic 40.0%
CCTTAAATCCTGCTATGAAC+TGG - Chr8:61773383-61773402 MsG0880045615.01.T01:CDS 40.0%
CCTTGTCGGTATGTGTAATT+AGG - Chr8:61773943-61773962 MsG0880045615.01.T01:intron 40.0%
CTGCAATTAGGAGGAAGTTT+AGG - Chr8:61773270-61773289 MsG0880045615.01.T01:CDS 40.0%
CTTGAAAAAGATGACCATCG+GGG + Chr8:61771860-61771879 None:intergenic 40.0%
GCTCATGAATTGTTCTTGCT+GGG - Chr8:61774278-61774297 MsG0880045615.01.T01:CDS 40.0%
GTAATATACTCCACAGTGCA+TGG + Chr8:61772748-61772767 None:intergenic 40.0%
TATATTACCCGGTACATAGC+TGG - Chr8:61772760-61772779 MsG0880045615.01.T01:intron 40.0%
TCATACGGTTAATCTGGGTT+TGG - Chr8:61773319-61773338 MsG0880045615.01.T01:CDS 40.0%
TGAAGTTGCTGTGATGACTA+AGG - Chr8:61773991-61774010 MsG0880045615.01.T01:intron 40.0%
TGCAAAGAAAGCTCCTCTTA+AGG - Chr8:61774096-61774115 MsG0880045615.01.T01:intron 40.0%
TTGAAAAAGATGACCATCGG+GGG + Chr8:61771859-61771878 None:intergenic 40.0%
! AAGGGACACTTAGTGCTATT+AGG + Chr8:61773410-61773429 None:intergenic 40.0%
! AGAGAAAGCTTGGTTCGATT+TGG - Chr8:61771756-61771775 MsG0880045615.01.T01:three_prime_UTR 40.0%
! CTTAGGGTTTAGAGTGTGAT+TGG - Chr8:61772070-61772089 MsG0880045615.01.T01:CDS 40.0%
! CTTCTGGTACATTTTCAGCA+TGG - Chr8:61772893-61772912 MsG0880045615.01.T01:intron 40.0%
! GGTGTTAGGTTTAGGATCTT+AGG - Chr8:61772053-61772072 MsG0880045615.01.T01:CDS 40.0%
! TGGTACATTTTCAGCATGGA+AGG - Chr8:61772897-61772916 MsG0880045615.01.T01:intron 40.0%
! TGTAATTAGGTTGTCGAGAG+TGG - Chr8:61773956-61773975 MsG0880045615.01.T01:intron 40.0%
!! TTTTAAAGAGACCTCTGGAC+AGG - Chr8:61772972-61772991 MsG0880045615.01.T01:intron 40.0%
!! TTTTATGACGTTGACTACCC+AGG - Chr8:61773148-61773167 MsG0880045615.01.T01:CDS 40.0%
AAGCCATACAACCATCAGCT+AGG + Chr8:61773793-61773812 None:intergenic 45.0%
ACATTGCTCTTGCTTGTGCT+GGG - Chr8:61772647-61772666 MsG0880045615.01.T01:intron 45.0%
AGAATCTTGAAGCTTAGCGG+TGG + Chr8:61771973-61771992 None:intergenic 45.0%
ATGTACCAGAAGGATCTGTC+TGG + Chr8:61772885-61772904 None:intergenic 45.0%
CCGCTAAGCTTCAAGATTCT+AGG - Chr8:61771973-61771992 MsG0880045615.01.T01:three_prime_UTR 45.0%
GAAACACAGAAGAACTCCTG+AGG - Chr8:61774211-61774230 MsG0880045615.01.T01:CDS 45.0%
GCACAGTGTGGGTAAATTGT+TGG + Chr8:61773351-61773370 None:intergenic 45.0%
GCACTGTGGAGTATATTACC+CGG - Chr8:61772749-61772768 MsG0880045615.01.T01:intron 45.0%
TATTAGGCCCAGTTCATAGC+AGG + Chr8:61773394-61773413 None:intergenic 45.0%
TGCTCGTGTCTTGATAAACC+GGG - Chr8:61772681-61772700 MsG0880045615.01.T01:intron 45.0%
TGGACAGGAAACTGTGAAGT+TGG - Chr8:61772987-61773006 MsG0880045615.01.T01:intron 45.0%
TGTTCTTGCTGGGTGACTTA+AGG - Chr8:61774288-61774307 MsG0880045615.01.T01:CDS 45.0%
TGTTGAAGATCCATGCACTG+TGG - Chr8:61772735-61772754 MsG0880045615.01.T01:intron 45.0%
! AATGGTCAGAAAGCACAGTG+TGG + Chr8:61773363-61773382 None:intergenic 45.0%
! AATTAGGTTGTCGAGAGTGG+TGG - Chr8:61773959-61773978 MsG0880045615.01.T01:intron 45.0%
! ATGGTCAGAAAGCACAGTGT+GGG + Chr8:61773362-61773381 None:intergenic 45.0%
! CAAAAGTACACGCAAAGTGG+TGG - Chr8:61772790-61772809 MsG0880045615.01.T01:intron 45.0%
! CACTTTGCGTGTACTTTTGC+TGG + Chr8:61772789-61772808 None:intergenic 45.0%
! CAGCAAAAGTACACGCAAAG+TGG - Chr8:61772787-61772806 MsG0880045615.01.T01:intron 45.0%
! TCTTCCAAAGTACCACTCCT+GGG + Chr8:61773168-61773187 None:intergenic 45.0%
! TTCTTCCAAAGTACCACTCC+TGG + Chr8:61773169-61773188 None:intergenic 45.0%
!! AGTACGCTCTAGAAGCTGTT+AGG - Chr8:61771883-61771902 MsG0880045615.01.T01:three_prime_UTR 45.0%
!! GCTCTAGAAGCTGTTAGGAA+GGG - Chr8:61771888-61771907 MsG0880045615.01.T01:three_prime_UTR 45.0%
!! GGTATCGATAACGTCGTTCT+CGG - Chr8:61771933-61771952 MsG0880045615.01.T01:three_prime_UTR 45.0%
!! GTTGGCTTTGATCCTTACAC+CGG - Chr8:61772844-61772863 MsG0880045615.01.T01:intron 45.0%
!! TTGGCTTTGATCCTTACACC+GGG - Chr8:61772845-61772864 MsG0880045615.01.T01:intron 45.0%
!! TAATATAATATAATGTAAAA+TGG - Chr8:61772553-61772572 MsG0880045615.01.T01:intron 5.0%
ACGTAAGCATCTGTAGGCGT+TGG - Chr8:61774141-61774160 MsG0880045615.01.T01:intron 50.0%
ACTACCCAGGAGTGGTACTT+TGG - Chr8:61773161-61773180 MsG0880045615.01.T01:CDS 50.0%
AGGATCTGTCTGGTACAGAG+AGG + Chr8:61772875-61772894 None:intergenic 50.0%
AGGGTTTCTTGGATAGCCTC+AGG + Chr8:61774230-61774249 None:intergenic 50.0%
CACATTGCTCTTGCTTGTGC+TGG - Chr8:61772646-61772665 MsG0880045615.01.T01:intron 50.0%
CTGTACCAGACAGATCCTTC+TGG - Chr8:61772877-61772896 MsG0880045615.01.T01:intron 50.0%
CTTCACAGTTTCCTGTCCAG+AGG + Chr8:61772986-61773005 None:intergenic 50.0%
GCTGTGATGACTAAGGAGCA+CGG - Chr8:61773998-61774017 MsG0880045615.01.T01:intron 50.0%
GGATCTGTCTGGTACAGAGA+GGG + Chr8:61772874-61772893 None:intergenic 50.0%
GGGCTTTCCACTTTGATCGT+TGG - Chr8:61772826-61772845 MsG0880045615.01.T01:intron 50.0%
! ATCACAGTTTTCTCCCCCGA+TGG - Chr8:61771843-61771862 MsG0880045615.01.T01:three_prime_UTR 50.0%
! CGAATTCGAGTTTCTGCCAG+TGG + Chr8:61772929-61772948 None:intergenic 50.0%
!! CGCTCTAGAAGCTGTTAGGA+AGG - Chr8:61771887-61771906 MsG0880045615.01.T01:three_prime_UTR 50.0%
AGCAGAGAAAGCAGCTGCTG+AGG - Chr8:61774072-61774091 MsG0880045615.01.T01:intron 55.0%
ATCGATACCGCGAACACCGA+CGG + Chr8:61771922-61771941 None:intergenic 55.0%
CAACAGTGAGCCTGTGACTC+TGG + Chr8:61772720-61772739 None:intergenic 55.0%
CTGGAGACCAGCTATGTACC+GGG + Chr8:61772770-61772789 None:intergenic 55.0%
GCATGGAAGGCAAATGCCAC+TGG - Chr8:61772910-61772929 MsG0880045615.01.T01:intron 55.0%
GCGTTGAATGCCAGAGTCAC+AGG - Chr8:61772707-61772726 MsG0880045615.01.T01:intron 55.0%
GCTGGAGACCAGCTATGTAC+CGG + Chr8:61772771-61772790 None:intergenic 55.0%
! ACACGCAAAGTGGTGGTGTG+CGG - Chr8:61772797-61772816 MsG0880045615.01.T01:intron 55.0%
! TGACGTTGACTACCCAGGAG+TGG - Chr8:61773153-61773172 MsG0880045615.01.T01:CDS 55.0%
AGAGAGGGAGACCCGGTGTA+AGG + Chr8:61772859-61772878 None:intergenic 60.0%
CTGGTACAGAGAGGGAGACC+CGG + Chr8:61772866-61772885 None:intergenic 60.0%
GCACGGTCTGCGTCAATTGG+AGG - Chr8:61774015-61774034 MsG0880045615.01.T01:intron 60.0%
GGAGCACGGTCTGCGTCAAT+TGG - Chr8:61774012-61774031 MsG0880045615.01.T01:intron 60.0%
TCTGGCATTCAACGCGTGCC+CGG + Chr8:61772702-61772721 None:intergenic 60.0%
! AGTGGTGGTGTGCGGCCATT+TGG - Chr8:61772805-61772824 MsG0880045615.01.T01:intron 60.0%
! GTGGTGGTGTGCGGCCATTT+GGG - Chr8:61772806-61772825 MsG0880045615.01.T01:intron 60.0%
AGGAAGGGTAACGCCGCCGT+CGG - Chr8:61771903-61771922 MsG0880045615.01.T01:three_prime_UTR 65.0%
GATACCGCGAACACCGACGG+CGG + Chr8:61771919-61771938 None:intergenic 65.0%
! AACGCCGCCGTCGGTGTTCG+CGG - Chr8:61771912-61771931 MsG0880045615.01.T01:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 61771734 61774431 61771734 ID=MsG0880045615.01;Name=MsG0880045615.01
Chr8 mRNA 61771734 61774431 61771734 ID=MsG0880045615.01.T01;Parent=MsG0880045615.01;Name=MsG0880045615.01.T01;_AED=0.49;_eAED=0.49;_QI=88|1|1|1|1|1|3|305|249
Chr8 exon 61771734 61772200 61771734 ID=MsG0880045615.01.T01:exon:23653;Parent=MsG0880045615.01.T01
Chr8 exon 61773136 61773550 61773136 ID=MsG0880045615.01.T01:exon:23652;Parent=MsG0880045615.01.T01
Chr8 exon 61774171 61774431 61774171 ID=MsG0880045615.01.T01:exon:23651;Parent=MsG0880045615.01.T01
Chr8 five_prime_UTR 61774344 61774431 61774344 ID=MsG0880045615.01.T01:five_prime_utr;Parent=MsG0880045615.01.T01
Chr8 CDS 61774171 61774343 61774171 ID=MsG0880045615.01.T01:cds;Parent=MsG0880045615.01.T01
Chr8 CDS 61773136 61773550 61773136 ID=MsG0880045615.01.T01:cds;Parent=MsG0880045615.01.T01
Chr8 CDS 61772039 61772200 61772039 ID=MsG0880045615.01.T01:cds;Parent=MsG0880045615.01.T01
Chr8 three_prime_UTR 61771734 61772038 61771734 ID=MsG0880045615.01.T01:three_prime_utr;Parent=MsG0880045615.01.T01
Gene Sequence

>MsG0880045615.01.T01

ATGGCAAGATACGACAGAGCGATCACAGTTTTCTCCCCCGATGGTCATCTTTTTCAAGTCGAGTACGCTCTAGAAGCTGTTAGGAAGGGTAACGCCGCCGTCGGTGTTCGCGGTATCGATAACGTCGTTCTCGGCGTCGAGAAGAAATCCACCGCTAAGCTTCAAGATTCTAGGTCAGTGAGAAAGATTGTAAATCTAGACGATCACATTGCTCTTGCTTGTGCTGGGCTAAAAGCTGATGCTCGTGTCTTGATAAACCGGGCACGCGTTGAATGCCAGAGTCACAGGCTCACTGTTGAAGATCCATGCACTGTGGAGTATATTACCCGGTACATAGCTGGTCTCCAGCAAAAGTACACGCAAAGTGGTGGTGTGCGGCCATTTGGGCTTTCCACTTTGATCGTTGGCTTTGATCCTTACACCGGGTCTCCCTCTCTGTACCAGACAGATCCTTCTGGTACATTTTCAGCATGGAAGGCAAATGCCACTGGCAGAAACTCGAATTCGATCCGTGAGTTTCTAGAAAAGAATTTTAAAGAGACCTCTGGACAGGAAACTGTGAAGTTGGCTATCCGAGCTTTGCTTGAAGTTGTCGAGAGTGGTGGTAAGAACATTGAAGTTGCTGTGATGACTAAGGAGCACGGTCTGCGTCAATTGGAGGAAGCTGAAATTGATGCTATTGTGGCTGAGATTGAAGCAGAGAAAGCAGCTGCTGAGGCTGCAAAGAAAGCTCCTCTTAAGGACACATGA
Protein sequence

>MsG0880045615.01.T01

MARYDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGIDNVVLGVEKKSTAKLQDSRSVRKIVNLDDHIALACAGLKADARVLINRARVECQSHRLTVEDPCTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNFKETSGQETVKLAIRALLEVVESGGKNIEVAVMTKEHGLRQLEEAEIDAIVAEIEAEKAAAEAAKKAPLKDT*