AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006029.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006029.01.T02 MTR_1g112250 100.000 237 0 0 1 237 1 237 7.28e-179 490
MsG0180006029.01.T02 MTR_6g013300 62.150 214 64 5 31 237 133 336 6.06e-75 230
MsG0180006029.01.T02 MTR_5g016590 42.324 241 121 7 8 236 5 239 6.11e-59 187
MsG0180006029.01.T02 MTR_7g070070 45.161 217 107 5 8 218 5 215 3.18e-58 185
MsG0180006029.01.T02 MTR_2g016050 40.343 233 129 5 6 234 2 228 1.60e-50 165
MsG0180006029.01.T02 MTR_8g075320 41.593 226 124 4 8 231 4 223 1.79e-50 165
MsG0180006029.01.T02 MTR_0167s0060 35.526 228 142 2 6 231 4 228 1.92e-47 157
MsG0180006029.01.T02 MTR_1g022410 46.154 182 93 2 3 184 1 177 3.89e-47 157
MsG0180006029.01.T02 MTR_8g464460 34.199 231 142 5 8 231 9 236 1.88e-40 139
MsG0180006029.01.T02 MTR_2g060830 32.900 231 145 5 8 231 9 236 9.72e-39 135
MsG0180006029.01.T02 MTR_6g024135 34.783 207 120 2 6 206 6 203 4.36e-38 133
MsG0180006029.01.T02 MTR_4g012740 32.127 221 105 4 3 184 232 446 1.77e-24 101
MsG0180006029.01.T02 MTR_4g057090 34.239 184 97 7 11 184 91 260 2.31e-17 80.1
MsG0180006029.01.T02 MTR_3g089040 28.313 166 107 3 34 196 54 210 1.18e-14 71.6
MsG0180006029.01.T02 MTR_5g006840 30.464 151 94 3 45 192 13 155 9.96e-13 65.5
MsG0180006029.01.T02 MTR_5g012470 28.249 177 114 4 42 213 10 178 1.19e-12 65.1
MsG0180006029.01.T01 MTR_1g112250 100.000 237 0 0 1 237 1 237 7.28e-179 490
MsG0180006029.01.T01 MTR_6g013300 62.150 214 64 5 31 237 133 336 6.06e-75 230
MsG0180006029.01.T01 MTR_5g016590 42.324 241 121 7 8 236 5 239 6.11e-59 187
MsG0180006029.01.T01 MTR_7g070070 45.161 217 107 5 8 218 5 215 3.18e-58 185
MsG0180006029.01.T01 MTR_2g016050 40.343 233 129 5 6 234 2 228 1.60e-50 165
MsG0180006029.01.T01 MTR_8g075320 41.593 226 124 4 8 231 4 223 1.79e-50 165
MsG0180006029.01.T01 MTR_0167s0060 35.526 228 142 2 6 231 4 228 1.92e-47 157
MsG0180006029.01.T01 MTR_1g022410 46.154 182 93 2 3 184 1 177 3.89e-47 157
MsG0180006029.01.T01 MTR_8g464460 34.199 231 142 5 8 231 9 236 1.88e-40 139
MsG0180006029.01.T01 MTR_2g060830 32.900 231 145 5 8 231 9 236 9.72e-39 135
MsG0180006029.01.T01 MTR_6g024135 34.783 207 120 2 6 206 6 203 4.36e-38 133
MsG0180006029.01.T01 MTR_4g012740 32.127 221 105 4 3 184 232 446 1.77e-24 101
MsG0180006029.01.T01 MTR_4g057090 34.239 184 97 7 11 184 91 260 2.31e-17 80.1
MsG0180006029.01.T01 MTR_3g089040 28.313 166 107 3 34 196 54 210 1.18e-14 71.6
MsG0180006029.01.T01 MTR_5g006840 30.464 151 94 3 45 192 13 155 9.96e-13 65.5
MsG0180006029.01.T01 MTR_5g012470 28.249 177 114 4 42 213 10 178 1.19e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006029.01.T02 AT3G14290 97.468 237 6 0 1 237 1 237 1.15e-175 482
MsG0180006029.01.T02 AT1G53850 97.046 237 7 0 1 237 1 237 3.52e-175 481
MsG0180006029.01.T02 AT1G53850 97.046 237 7 0 1 237 1 237 3.52e-175 481
MsG0180006029.01.T02 AT3G22110 41.494 241 123 7 8 236 5 239 1.13e-56 181
MsG0180006029.01.T02 AT5G66140 43.000 200 108 3 8 205 4 199 6.01e-48 159
MsG0180006029.01.T02 AT1G16470 35.088 228 143 2 6 231 4 228 1.53e-47 157
MsG0180006029.01.T02 AT1G16470 35.088 228 143 2 6 231 4 228 1.53e-47 157
MsG0180006029.01.T02 AT3G51260 41.038 212 117 4 7 216 3 208 1.62e-47 157
MsG0180006029.01.T02 AT1G79210 34.188 234 149 2 6 237 4 234 1.65e-47 157
MsG0180006029.01.T02 AT1G79210 34.188 234 149 2 6 237 4 234 1.65e-47 157
MsG0180006029.01.T02 AT1G79210 34.188 234 149 2 6 237 4 234 1.65e-47 157
MsG0180006029.01.T02 AT3G51260 42.500 200 109 3 8 205 4 199 2.63e-47 157
MsG0180006029.01.T02 AT5G42790 39.506 243 125 4 3 234 1 232 1.98e-46 155
MsG0180006029.01.T02 AT1G47250 45.856 181 93 2 3 183 1 176 3.03e-46 155
MsG0180006029.01.T02 AT5G35590 35.498 231 139 5 8 231 9 236 2.85e-41 141
MsG0180006029.01.T02 AT2G27020 33.333 207 123 2 6 206 6 203 5.72e-38 133
MsG0180006029.01.T02 AT2G05840 34.434 212 132 4 8 215 9 217 2.10e-37 130
MsG0180006029.01.T02 AT2G05840 34.419 215 134 4 8 218 9 220 2.78e-37 131
MsG0180006029.01.T02 AT2G27020 33.333 207 123 2 6 206 108 305 8.47e-37 132
MsG0180006029.01.T02 AT4G15165 31.535 241 105 6 8 236 5 197 3.82e-35 124
MsG0180006029.01.T02 AT2G05840 35.263 190 118 3 8 195 9 195 6.09e-35 124
MsG0180006029.01.T02 AT3G26340 26.500 200 132 5 27 220 48 238 7.74e-15 72.4
MsG0180006029.01.T02 AT1G13060 25.654 191 129 4 34 220 57 238 1.07e-13 69.3
MsG0180006029.01.T02 AT4G14800 28.652 178 115 4 45 218 13 182 2.99e-12 63.9
MsG0180006029.01.T02 AT5G40580 25.616 203 141 3 31 231 36 230 3.90e-12 64.7
MsG0180006029.01.T02 AT5G40580 25.616 203 141 3 31 231 36 230 3.90e-12 64.7
MsG0180006029.01.T02 AT3G27430 26.108 203 140 3 31 231 36 230 7.43e-12 63.9
MsG0180006029.01.T02 AT4G14800 28.495 186 121 4 45 218 13 198 7.58e-12 63.2
MsG0180006029.01.T02 AT3G27430 26.108 203 140 3 31 231 36 230 9.27e-12 63.5
MsG0180006029.01.T01 AT3G14290 97.468 237 6 0 1 237 1 237 1.15e-175 482
MsG0180006029.01.T01 AT1G53850 97.046 237 7 0 1 237 1 237 3.52e-175 481
MsG0180006029.01.T01 AT1G53850 97.046 237 7 0 1 237 1 237 3.52e-175 481
MsG0180006029.01.T01 AT3G22110 41.494 241 123 7 8 236 5 239 1.13e-56 181
MsG0180006029.01.T01 AT5G66140 43.000 200 108 3 8 205 4 199 6.01e-48 159
MsG0180006029.01.T01 AT1G16470 35.088 228 143 2 6 231 4 228 1.53e-47 157
MsG0180006029.01.T01 AT1G16470 35.088 228 143 2 6 231 4 228 1.53e-47 157
MsG0180006029.01.T01 AT3G51260 41.038 212 117 4 7 216 3 208 1.62e-47 157
MsG0180006029.01.T01 AT1G79210 34.188 234 149 2 6 237 4 234 1.65e-47 157
MsG0180006029.01.T01 AT1G79210 34.188 234 149 2 6 237 4 234 1.65e-47 157
MsG0180006029.01.T01 AT1G79210 34.188 234 149 2 6 237 4 234 1.65e-47 157
MsG0180006029.01.T01 AT3G51260 42.500 200 109 3 8 205 4 199 2.63e-47 157
MsG0180006029.01.T01 AT5G42790 39.506 243 125 4 3 234 1 232 1.98e-46 155
MsG0180006029.01.T01 AT1G47250 45.856 181 93 2 3 183 1 176 3.03e-46 155
MsG0180006029.01.T01 AT5G35590 35.498 231 139 5 8 231 9 236 2.85e-41 141
MsG0180006029.01.T01 AT2G27020 33.333 207 123 2 6 206 6 203 5.72e-38 133
MsG0180006029.01.T01 AT2G05840 34.434 212 132 4 8 215 9 217 2.10e-37 130
MsG0180006029.01.T01 AT2G05840 34.419 215 134 4 8 218 9 220 2.78e-37 131
MsG0180006029.01.T01 AT2G27020 33.333 207 123 2 6 206 108 305 8.47e-37 132
MsG0180006029.01.T01 AT4G15165 31.535 241 105 6 8 236 5 197 3.82e-35 124
MsG0180006029.01.T01 AT2G05840 35.263 190 118 3 8 195 9 195 6.09e-35 124
MsG0180006029.01.T01 AT3G26340 26.500 200 132 5 27 220 48 238 7.74e-15 72.4
MsG0180006029.01.T01 AT1G13060 25.654 191 129 4 34 220 57 238 1.07e-13 69.3
MsG0180006029.01.T01 AT4G14800 28.652 178 115 4 45 218 13 182 2.99e-12 63.9
MsG0180006029.01.T01 AT5G40580 25.616 203 141 3 31 231 36 230 3.90e-12 64.7
MsG0180006029.01.T01 AT5G40580 25.616 203 141 3 31 231 36 230 3.90e-12 64.7
MsG0180006029.01.T01 AT3G27430 26.108 203 140 3 31 231 36 230 7.43e-12 63.9
MsG0180006029.01.T01 AT4G14800 28.495 186 121 4 45 218 13 198 7.58e-12 63.2
MsG0180006029.01.T01 AT3G27430 26.108 203 140 3 31 231 36 230 9.27e-12 63.5

Find 28 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGCGGAGGGTTGAGAAAT+CGG 0.323198 1:-99047810 None:intergenic
AGACTGAATATCAGAAAATA+TGG 0.331191 1:-99052620 None:intergenic
TAAAATAGTATCGCAGCGTT+TGG 0.351558 1:+99052659 MsG0180006029.01.T01:three_prime_UTR
AATCAAATCACGCAAATAGA+TGG 0.363237 1:-99052516 None:intergenic
TTGGTTTGATTTGATTTGAA+TGG 0.405827 1:-99047861 None:intergenic
CCAACAACGTTGACATTGCC+AGG 0.408754 1:+99052427 MsG0180006029.01.T01:CDS
GAAGAGAAAGAGTGTGAGAT+GGG 0.423463 1:-99047780 None:intergenic
CCTGGCAATGTCAACGTTGT+TGG 0.426746 1:-99052427 None:intergenic
AAAATAGTATCGCAGCGTTT+GGG 0.438945 1:+99052660 MsG0180006029.01.T01:three_prime_UTR
CTGGCAATGTCAACGTTGTT+GGG 0.454160 1:-99052426 None:intergenic
CGCAAATAGATGGAAATCAT+AGG 0.479822 1:-99052506 None:intergenic
GAGCGGAGGGTTGAGAAATC+GGG 0.481377 1:-99047809 None:intergenic
AGAAGAGAAAGAGTGTGAGA+TGG 0.487758 1:-99047781 None:intergenic
TTTGATTTGATTTGAATGGA+TGG 0.504493 1:-99047857 None:intergenic
ATCACAGCTTCCACCTCAGA+CGG 0.535599 1:-99052477 None:intergenic
TCACAGCTTCCACCTCAGAC+GGG 0.536535 1:-99052476 None:intergenic
TCTTTATACCCCGTCTGAGG+TGG 0.544181 1:+99052467 MsG0180006029.01.T01:CDS
ATGATACGCTGGAGCAACCC+TGG 0.548475 1:-99052445 None:intergenic
TGAATATCAGAAAATATGGT+AGG 0.556483 1:-99052616 None:intergenic
TACCTAAAAGACCTCTCGCT+GGG 0.559939 1:-99047748 None:intergenic
ATCTAGTATTGCATACAACT+TGG 0.561296 1:-99052590 None:intergenic
TTACCTAAAAGACCTCTCGC+TGG 0.564004 1:-99047749 None:intergenic
TAACCTTGTGAGAAACATGT+TGG 0.566164 1:-99047880 None:intergenic
AAACCAACATGTTTCTCACA+AGG 0.620638 1:+99047877 MsG0180006029.01.T01:exon
TCATCTTTATACCCCGTCTG+AGG 0.634475 1:+99052464 MsG0180006029.01.T01:CDS
CAACAACGTTGACATTGCCA+GGG 0.635659 1:+99052428 MsG0180006029.01.T01:CDS
CACAGCTTCCACCTCAGACG+GGG 0.645540 1:-99052475 None:intergenic
GGGGTATAAAGATGATACGC+TGG 0.658506 1:-99052456 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAAAAAAAATTACATAAA+AGG - Chr1:99048310-99048329 None:intergenic 10.0%
!! CAAAAAAAAATTACATAAAA+GGG - Chr1:99048309-99048328 None:intergenic 10.0%
!!! TTTAGAATAAATTGAATTAT+GGG + Chr1:99048628-99048647 MsG0180006029.01.T01:intron 10.0%
!!! TTTATAATTTAAAATGTTGT+TGG + Chr1:99052128-99052147 MsG0180006029.01.T01:intron 10.0%
!!! TTTGTTAATTTTTTTTTTGT+TGG + Chr1:99048182-99048201 MsG0180006029.01.T01:intron 10.0%
!! AGTAAAAATATATAATAGCA+CGG - Chr1:99052729-99052748 None:intergenic 15.0%
!! ATATCATTAAAATTATTAGC+TGG + Chr1:99051121-99051140 MsG0180006029.01.T01:intron 15.0%
!! ATTAATTACCTTAATTCTTT+GGG + Chr1:99051993-99052012 MsG0180006029.01.T01:intron 15.0%
!! TATCATTAAAATTATTAGCT+GGG + Chr1:99051122-99051141 MsG0180006029.01.T01:intron 15.0%
!! TATTAATTACCTTAATTCTT+TGG + Chr1:99051992-99052011 MsG0180006029.01.T01:intron 15.0%
!! TTAGAATAAATTGAATTATG+GGG + Chr1:99048629-99048648 MsG0180006029.01.T01:intron 15.0%
!!! ATATTGATATTGATCTATTT+TGG + Chr1:99049390-99049409 MsG0180006029.01.T01:intron 15.0%
!!! CTTTCTTATTATTTCTTTAA+TGG + Chr1:99050465-99050484 MsG0180006029.01.T01:intron 15.0%
!!! GTTTAGAATAAATTGAATTA+TGG + Chr1:99048627-99048646 MsG0180006029.01.T01:intron 15.0%
!!! TTTTTTATTAGTGTACAAAT+GGG + Chr1:99049814-99049833 MsG0180006029.01.T01:intron 15.0%
!!! TTTTTTTATTAGTGTACAAA+TGG + Chr1:99049813-99049832 MsG0180006029.01.T01:intron 15.0%
!! AAAATTACATAAAAGGGAAT+AGG - Chr1:99048303-99048322 None:intergenic 20.0%
!! AAATTGTAATGTATGTTTCA+TGG - Chr1:99049113-99049132 None:intergenic 20.0%
!! AACAAAAATCCTAATACATT+TGG - Chr1:99047982-99048001 None:intergenic 20.0%
!! AACAAAAATGAGAAAATTAC+AGG - Chr1:99050317-99050336 None:intergenic 20.0%
!! AACCCTAATAATAATAATAG+AGG - Chr1:99048134-99048153 None:intergenic 20.0%
!! AAGAGTTGAATATGATTTAT+AGG - Chr1:99052025-99052044 None:intergenic 20.0%
!! AATAAAAAAGAAAGAAGTGA+TGG - Chr1:99050376-99050395 None:intergenic 20.0%
!! AATAAATATGACTATAAGCA+CGG - Chr1:99049071-99049090 None:intergenic 20.0%
!! ACAAAAATCCTAATACATTT+GGG - Chr1:99047981-99048000 None:intergenic 20.0%
!! ACCCTAATAATAATAATAGA+GGG - Chr1:99048133-99048152 None:intergenic 20.0%
!! ATAAAAAAACACCTTACAAA+AGG - Chr1:99049802-99049821 None:intergenic 20.0%
!! ATAAAAAAGAAAGAAGTGAT+GGG - Chr1:99050375-99050394 None:intergenic 20.0%
!! ATATTAAACATTCCTATGAA+AGG + Chr1:99049763-99049782 MsG0180006029.01.T01:intron 20.0%
!! ATGTTAAAACATTTCTAAAC+CGG + Chr1:99050268-99050287 MsG0180006029.01.T01:intron 20.0%
!! ATTAGTTAAATTACAGAGAA+AGG + Chr1:99050169-99050188 MsG0180006029.01.T01:intron 20.0%
!! CTAAACTTAAAATCTATTGT+TGG + Chr1:99049740-99049759 MsG0180006029.01.T01:intron 20.0%
!! TGTTAAATAGATACACAAAA+TGG + Chr1:99051820-99051839 MsG0180006029.01.T01:intron 20.0%
!! TTAATTACCTTAATTCTTTG+GGG + Chr1:99051994-99052013 MsG0180006029.01.T01:intron 20.0%
!!! AGAATATCAATATGATTTGT+AGG - Chr1:99052049-99052068 None:intergenic 20.0%
!!! ATTTATTTCCTTTTTCATTC+TGG + Chr1:99050902-99050921 MsG0180006029.01.T01:intron 20.0%
!!! CAACAATAGATTTTAAGTTT+AGG - Chr1:99049742-99049761 None:intergenic 20.0%
!!! TACCATTTATTTTTTCTCTT+TGG + Chr1:99049928-99049947 MsG0180006029.01.T01:intron 20.0%
!!! TGATTGATATTGATCTATTT+TGG + Chr1:99049319-99049338 MsG0180006029.01.T01:intron 20.0%
! AAATTCTTGTCAAATATGTC+CGG - Chr1:99050290-99050309 None:intergenic 25.0%
! AATAGAATGTTGTATGTAGT+TGG + Chr1:99049287-99049306 MsG0180006029.01.T01:intron 25.0%
! AATAGATCACTGCATAAAAA+TGG - Chr1:99047837-99047856 None:intergenic 25.0%
! AGACAAAAATATACAAGAGA+TGG - Chr1:99052083-99052102 None:intergenic 25.0%
! AGACTGAATATCAGAAAATA+TGG - Chr1:99052623-99052642 None:intergenic 25.0%
! AGTTAGAATATATTCTCAGT+AGG - Chr1:99052375-99052394 None:intergenic 25.0%
! ATATGCAATTGAAGCTATTA+AGG + Chr1:99048100-99048119 MsG0180006029.01.T01:CDS 25.0%
! ATTAAAATTATTAGCTGGGA+TGG + Chr1:99051126-99051145 MsG0180006029.01.T01:intron 25.0%
! CAAAAATCCTAATACATTTG+GGG - Chr1:99047980-99047999 None:intergenic 25.0%
! CACACATATATTTCTTACTT+GGG - Chr1:99048576-99048595 None:intergenic 25.0%
! GAAATAATAAGAAAGAGTGA+AGG - Chr1:99050460-99050479 None:intergenic 25.0%
! GCCCTCTATTATTATTATTA+GGG + Chr1:99048129-99048148 MsG0180006029.01.T01:intron 25.0%
! GTTAGAATATATTCTCAGTA+GGG - Chr1:99052374-99052393 None:intergenic 25.0%
! TAGATGGAATATATACTTAC+AGG - Chr1:99050013-99050032 None:intergenic 25.0%
! TATAGAATGTTGTATGTAGT+TGG + Chr1:99049347-99049366 MsG0180006029.01.T01:intron 25.0%
! TGAATATCAGAAAATATGGT+AGG - Chr1:99052619-99052638 None:intergenic 25.0%
! TGCATATTCTGAATGTTTAA+TGG + Chr1:99049669-99049688 MsG0180006029.01.T01:intron 25.0%
! TGCCAAAGAGAAAAAATAAA+TGG - Chr1:99049933-99049952 None:intergenic 25.0%
! TGCCCTCTATTATTATTATT+AGG + Chr1:99048128-99048147 MsG0180006029.01.T01:intron 25.0%
! TTAGAATATATTCTCAGTAG+GGG - Chr1:99052373-99052392 None:intergenic 25.0%
! TTGCTTAAAGATTATCTTTC+AGG + Chr1:99052177-99052196 MsG0180006029.01.T01:intron 25.0%
! TTGTAAAAGATACTTACTAG+TGG + Chr1:99049869-99049888 MsG0180006029.01.T01:intron 25.0%
!! AAAAGAAAGTGTAACATACA+AGG - Chr1:99050143-99050162 None:intergenic 25.0%
!! ATTGATTTATTATGTTGTGC+AGG + Chr1:99052240-99052259 MsG0180006029.01.T01:intron 25.0%
!! TAATTTTCCCCAAATGTATT+AGG + Chr1:99047970-99047989 MsG0180006029.01.T01:intron 25.0%
!! TATGTTACACTTTCTTTTCT+GGG + Chr1:99050145-99050164 MsG0180006029.01.T01:intron 25.0%
!! TCAGAATTACATCTAAAACT+GGG - Chr1:99049010-99049029 None:intergenic 25.0%
!! TGTTATTTGCAACAGTATTA+AGG - Chr1:99051967-99051986 None:intergenic 25.0%
!! TTCAGAATTACATCTAAAAC+TGG - Chr1:99049011-99049030 None:intergenic 25.0%
!!! ATCTCTTGTATATTTTTGTC+TGG + Chr1:99052082-99052101 MsG0180006029.01.T01:intron 25.0%
!!! GGTTTTTAACTATCTGTATT+CGG + Chr1:99048150-99048169 MsG0180006029.01.T01:intron 25.0%
!!! GTATTAGGATTTTTGTTTCT+AGG + Chr1:99047985-99048004 MsG0180006029.01.T01:intron 25.0%
!!! GTTTTTAACTATCTGTATTC+GGG + Chr1:99048151-99048170 MsG0180006029.01.T01:intron 25.0%
!!! TATTTTGATTTTGTAGGATC+AGG + Chr1:99050825-99050844 MsG0180006029.01.T01:intron 25.0%
!!! TTCACAAATACTTTTGAGAA+AGG - Chr1:99050406-99050425 None:intergenic 25.0%
!!! TTGGTTTGATTTGATTTGAA+TGG - Chr1:99047864-99047883 None:intergenic 25.0%
!!! TTTATTTTTCACAGAATCAC+AGG + Chr1:99049413-99049432 MsG0180006029.01.T01:intron 25.0%
!!! TTTCTCATTTTTGTTTCACT+TGG + Chr1:99050322-99050341 MsG0180006029.01.T01:intron 25.0%
!!! TTTGATTTGATTTGAATGGA+TGG - Chr1:99047860-99047879 None:intergenic 25.0%
AAGATTATCTTTCAGGATAG+AGG + Chr1:99052184-99052203 MsG0180006029.01.T01:intron 30.0%
AATCAAATCACGCAAATAGA+TGG - Chr1:99052519-99052538 None:intergenic 30.0%
AATTGAATTATGGGGATATC+TGG + Chr1:99048637-99048656 MsG0180006029.01.T01:intron 30.0%
AGAAAATAATTGCACAGCAT+GGG + Chr1:99050802-99050821 MsG0180006029.01.T01:intron 30.0%
AGCTAAGAAGTTATATACCA+TGG - Chr1:99049527-99049546 None:intergenic 30.0%
ATCTAGTATTGCATACAACT+TGG - Chr1:99052593-99052612 None:intergenic 30.0%
ATGAAAATCTGCCCTAAAAA+GGG - Chr1:99048529-99048548 None:intergenic 30.0%
ATTGAGTCTCAAATCCTAAT+TGG - Chr1:99050721-99050740 None:intergenic 30.0%
GACATGAAAACAAGTGAATT+TGG + Chr1:99052216-99052235 MsG0180006029.01.T01:intron 30.0%
GCACACATATATTTCTTACT+TGG - Chr1:99048577-99048596 None:intergenic 30.0%
GTCATCTATAGTAGAAAGAT+GGG - Chr1:99051596-99051615 None:intergenic 30.0%
TAGAATATATTCTCAGTAGG+GGG - Chr1:99052372-99052391 None:intergenic 30.0%
TATAAGCGAGACTATTAAGA+AGG - Chr1:99051428-99051447 None:intergenic 30.0%
TATATATTCCATCTAAGCCA+TGG + Chr1:99050018-99050037 MsG0180006029.01.T01:intron 30.0%
TCATCTATAGTAGAAAGATG+GGG - Chr1:99051595-99051614 None:intergenic 30.0%
TCTCCATTTCTCAAAACAAA+TGG - Chr1:99051789-99051808 None:intergenic 30.0%
TGTGTTAAAATTCCACTTTC+AGG + Chr1:99049133-99049152 MsG0180006029.01.T01:intron 30.0%
TTCTACCATCTTTCTACTAT+AGG + Chr1:99051564-99051583 MsG0180006029.01.T01:intron 30.0%
TTCTGCGTCTAAAAGAATTT+GGG + Chr1:99051648-99051667 MsG0180006029.01.T01:intron 30.0%
TTCTTGTTCAAACTAGTTCA+TGG + Chr1:99050633-99050652 MsG0180006029.01.T01:intron 30.0%
TTGAGTCTCAAATCCTAATT+GGG - Chr1:99050720-99050739 None:intergenic 30.0%
TTTCTGCGTCTAAAAGAATT+TGG + Chr1:99051647-99051666 MsG0180006029.01.T01:intron 30.0%
! AAATTCTTTTAGACGCAGAA+AGG - Chr1:99051648-99051667 None:intergenic 30.0%
! ACTGCTGTTTGATAATTTGT+TGG - Chr1:99048788-99048807 None:intergenic 30.0%
! ATGGAAATTGATGATCACAT+TGG + Chr1:99049179-99049198 MsG0180006029.01.T01:CDS 30.0%
! ATGTTACACTTTCTTTTCTG+GGG + Chr1:99050146-99050165 MsG0180006029.01.T01:intron 30.0%
! GAGAATGATGCTATAGTTTT+AGG + Chr1:99050494-99050513 MsG0180006029.01.T01:intron 30.0%
! GTAAATACATCTTTTCTGTG+CGG + Chr1:99050550-99050569 MsG0180006029.01.T01:intron 30.0%
! GTATGTTACACTTTCTTTTC+TGG + Chr1:99050144-99050163 MsG0180006029.01.T01:intron 30.0%
!! ATCAATTCTGAAGCAAGTTA+TGG + Chr1:99052297-99052316 MsG0180006029.01.T01:CDS 30.0%
!! GGTTTTTCAATAGAACATCA+TGG - Chr1:99051374-99051393 None:intergenic 30.0%
!! TGCATTAATTTGTCTGTGAT+GGG - Chr1:99050767-99050786 None:intergenic 30.0%
!!! CATGGGTATTTTGATTTTGT+AGG + Chr1:99050819-99050838 MsG0180006029.01.T01:intron 30.0%
!!! TTTTTTGTTGGATTTCAGCT+TGG + Chr1:99048194-99048213 MsG0180006029.01.T01:intron 30.0%
AAAACTGGGTATAACACGTT+TGG - Chr1:99048996-99049015 None:intergenic 35.0%
AAAATAGTATCGCAGCGTTT+GGG + Chr1:99052660-99052679 MsG0180006029.01.T01:three_prime_UTR 35.0%
AAACCAACATGTTTCTCACA+AGG + Chr1:99047877-99047896 MsG0180006029.01.T01:exon 35.0%
AAATTAGACTCAGGTGGTTT+GGG - Chr1:99051546-99051565 None:intergenic 35.0%
AACACAGAAAACGAGTCAAA+AGG - Chr1:99050072-99050091 None:intergenic 35.0%
AACTGGAAGTAACATGCATT+TGG - Chr1:99052343-99052362 None:intergenic 35.0%
AAGTTTGTGGACATTTCACA+TGG - Chr1:99048947-99048966 None:intergenic 35.0%
AATTACAGAGAAAGGACATG+TGG + Chr1:99050177-99050196 MsG0180006029.01.T01:intron 35.0%
AGATATTACACTGATCCTTC+TGG + Chr1:99050962-99050981 MsG0180006029.01.T01:intron 35.0%
AGATCACTGCATAAAAATGG+CGG - Chr1:99047834-99047853 None:intergenic 35.0%
AGATGGTAGAAATTAGACTC+AGG - Chr1:99051555-99051574 None:intergenic 35.0%
AGGAAACATTTAGTGGTAGT+TGG + Chr1:99050685-99050704 MsG0180006029.01.T01:intron 35.0%
AGTCAAATCACTAGAGATAG+GGG - Chr1:99051466-99051485 None:intergenic 35.0%
ATAAAAGAGAGAGAGAGGAA+AGG - Chr1:99047909-99047928 None:intergenic 35.0%
CAGAAAATAATTGCACAGCA+TGG + Chr1:99050801-99050820 MsG0180006029.01.T01:intron 35.0%
CATACAATACACCAAATGGT+GGG + Chr1:99048445-99048464 MsG0180006029.01.T01:intron 35.0%
CATATAGATCCAAGAATTCC+AGG - Chr1:99051906-99051925 None:intergenic 35.0%
CATTATTAACCTCACCATAG+CGG - Chr1:99048703-99048722 None:intergenic 35.0%
CCAATAGTCCAGAATGAAAA+AGG - Chr1:99050913-99050932 None:intergenic 35.0%
CCACTAAATGTTTCCTGTTA+TGG - Chr1:99050681-99050700 None:intergenic 35.0%
CCATAACAGGAAACATTTAG+TGG + Chr1:99050678-99050697 MsG0180006029.01.T01:intron 35.0%
CGCAAATAGATGGAAATCAT+AGG - Chr1:99052509-99052528 None:intergenic 35.0%
CGTCATCTATAGTAGAAAGA+TGG - Chr1:99051597-99051616 None:intergenic 35.0%
CTCCTTACTACAAAATCCAT+AGG + Chr1:99051505-99051524 MsG0180006029.01.T01:intron 35.0%
CTCTTCTGTACTTTCACATT+AGG + Chr1:99052398-99052417 MsG0180006029.01.T01:intron 35.0%
GAGTCAAATCACTAGAGATA+GGG - Chr1:99051467-99051486 None:intergenic 35.0%
GATGAAAATCTGCCCTAAAA+AGG - Chr1:99048530-99048549 None:intergenic 35.0%
GGAATATATACTTACAGGCT+AGG - Chr1:99050008-99050027 None:intergenic 35.0%
GGATATTCATATGCAAAGAG+TGG + Chr1:99050234-99050253 MsG0180006029.01.T01:intron 35.0%
GTAACAACTCTCCTCATTAT+GGG - Chr1:99051884-99051903 None:intergenic 35.0%
GTGTAACATACAAGGAACAA+CGG - Chr1:99050135-99050154 None:intergenic 35.0%
GTTTCCTGTTATGGTTCAAA+AGG - Chr1:99050672-99050691 None:intergenic 35.0%
TAAAAGAGAGAGAGAGGAAA+GGG - Chr1:99047908-99047927 None:intergenic 35.0%
TAAAATAGTATCGCAGCGTT+TGG + Chr1:99052659-99052678 MsG0180006029.01.T01:three_prime_UTR 35.0%
TAACAACTCTCCTCATTATG+GGG - Chr1:99051883-99051902 None:intergenic 35.0%
TAACCTTGTGAGAAACATGT+TGG - Chr1:99047883-99047902 None:intergenic 35.0%
TAATAAGCTGGAGAAAGACA+TGG - Chr1:99051395-99051414 None:intergenic 35.0%
TCTCCAGCTTATTAATCTCT+AGG + Chr1:99051401-99051420 MsG0180006029.01.T01:intron 35.0%
TCTGCAAGAACAATTCAACA+AGG + Chr1:99051045-99051064 MsG0180006029.01.T01:CDS 35.0%
TCTTGTGTAAAAACAGGGTA+AGG + Chr1:99048419-99048438 MsG0180006029.01.T01:intron 35.0%
TGAGTCTCAAATCCTAATTG+GGG - Chr1:99050719-99050738 None:intergenic 35.0%
TGCTTACAGTGCTTTCTTTA+AGG + Chr1:99049575-99049594 MsG0180006029.01.T01:intron 35.0%
TGTATTTACGCACACATCAA+TGG - Chr1:99050539-99050558 None:intergenic 35.0%
TTAACTATCTGTATTCGGGT+TGG + Chr1:99048155-99048174 MsG0180006029.01.T01:intron 35.0%
TTCAGAATATGCAACACACA+AGG - Chr1:99049662-99049681 None:intergenic 35.0%
! AAGAACAGTCGCAATTTTTC+TGG + Chr1:99050213-99050232 MsG0180006029.01.T01:intron 35.0%
! ATAATTTTCTCCACACTGCT+GGG - Chr1:99049161-99049180 None:intergenic 35.0%
! GACCTATGGATTTTGTAGTA+AGG - Chr1:99051510-99051529 None:intergenic 35.0%
! GTCTCGCTTATAGTTTTTCT+AGG + Chr1:99051436-99051455 MsG0180006029.01.T01:intron 35.0%
! TAATTTGTCTGTGATGGGAA+TGG - Chr1:99050762-99050781 None:intergenic 35.0%
!! ATACTTACTAGTGGTGTTGT+TGG + Chr1:99049878-99049897 MsG0180006029.01.T01:intron 35.0%
!! ATTGGCTTGAAAACGAAAGA+GGG + Chr1:99048227-99048246 MsG0180006029.01.T01:CDS 35.0%
!! ATTTTGGCAATGCAATGCAA+AGG + Chr1:99050988-99051007 MsG0180006029.01.T01:CDS 35.0%
!! CCTTTTTCATTCTGGACTAT+TGG + Chr1:99050910-99050929 MsG0180006029.01.T01:intron 35.0%
!! CTGCATTAATTTGTCTGTGA+TGG - Chr1:99050768-99050787 None:intergenic 35.0%
!! TTTTGTTTCACTTGGTTCCT+TGG + Chr1:99050330-99050349 MsG0180006029.01.T01:intron 35.0%
!!! ACCCTTTTTTGCCCTTTTTA+GGG + Chr1:99048515-99048534 MsG0180006029.01.T01:intron 35.0%
!!! GCTCCATTTGTTTTGAGAAA+TGG + Chr1:99051783-99051802 MsG0180006029.01.T01:intron 35.0%
!!! TACCCTTTTTTGCCCTTTTT+AGG + Chr1:99048514-99048533 MsG0180006029.01.T01:intron 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG - Chr1:99048420-99048439 None:intergenic 35.0%
AACAACCCACTGTAAGAACA+TGG - Chr1:99051074-99051093 None:intergenic 40.0%
AACACCTTACAAAAGGACAG+TGG - Chr1:99049795-99049814 None:intergenic 40.0%
AACCTGAAACAAACGTCCTT+CGG - Chr1:99048078-99048097 None:intergenic 40.0%
ACACTGCATTGTTCAACTCT+CGG + Chr1:99050584-99050603 MsG0180006029.01.T01:intron 40.0%
ACAGCCTCTTGTGTAAAAAC+AGG + Chr1:99048413-99048432 MsG0180006029.01.T01:intron 40.0%
ACATGACTCAGAAGTAACCA+TGG - Chr1:99050038-99050057 None:intergenic 40.0%
ACGCAGAAAGGATCTTAAGA+GGG - Chr1:99051636-99051655 None:intergenic 40.0%
ACTAGTTCATGGTAGCAACT+TGG + Chr1:99050644-99050663 MsG0180006029.01.T01:intron 40.0%
AGAAGTAACCATGGCTTAGA+TGG - Chr1:99050029-99050048 None:intergenic 40.0%
AGGTATCCATGTTCTTACAG+TGG + Chr1:99051065-99051084 MsG0180006029.01.T01:intron 40.0%
AGTAAGGAGAGTAGATCAGA+TGG - Chr1:99051494-99051513 None:intergenic 40.0%
ATAACGTCAGTTTAGCAGTG+CGG + Chr1:99048735-99048754 MsG0180006029.01.T01:intron 40.0%
ATAAGGAGAGACACTCCAAA+TGG - Chr1:99049963-99049982 None:intergenic 40.0%
ATTAGAACTGAGTATGACCG+TGG + Chr1:99048035-99048054 MsG0180006029.01.T01:intron 40.0%
CAACTGTGTATGTGACTGTA+AGG + Chr1:99048369-99048388 MsG0180006029.01.T01:intron 40.0%
CAATGCAATGCAAAGGCTAT+TGG + Chr1:99050995-99051014 MsG0180006029.01.T01:CDS 40.0%
CACACATCAATGGTAAGAGT+AGG - Chr1:99050529-99050548 None:intergenic 40.0%
CAGAATCACAGGTTCTCTTA+TGG + Chr1:99049424-99049443 MsG0180006029.01.T01:intron 40.0%
CAGCACCTATAGTAGAAAGA+TGG - Chr1:99051572-99051591 None:intergenic 40.0%
CAGCAGTGTGGAGAAAATTA+TGG + Chr1:99049160-99049179 MsG0180006029.01.T01:CDS 40.0%
CAGCCTCTTGTGTAAAAACA+GGG + Chr1:99048414-99048433 MsG0180006029.01.T01:intron 40.0%
CAGTGGCTTAATCCTTTCAT+AGG - Chr1:99049778-99049797 None:intergenic 40.0%
CGCTATGGTGAGGTTAATAA+TGG + Chr1:99048701-99048720 MsG0180006029.01.T01:intron 40.0%
CTTATCTCACTAAGTGGAGT+CGG + Chr1:99051329-99051348 MsG0180006029.01.T01:intron 40.0%
GAAATTAGACTCAGGTGGTT+TGG - Chr1:99051547-99051566 None:intergenic 40.0%
GAAGCAAGTTATGGAAGAGA+AGG + Chr1:99052306-99052325 MsG0180006029.01.T01:CDS 40.0%
GAATAGGTACATACCAGTAG+AGG - Chr1:99048287-99048306 None:intergenic 40.0%
GAGTCTCAAATCCTAATTGG+GGG - Chr1:99050718-99050737 None:intergenic 40.0%
GAGTTGTTACCTGGAATTCT+TGG + Chr1:99051894-99051913 MsG0180006029.01.T01:intron 40.0%
GCATACAATACACCAAATGG+TGG + Chr1:99048444-99048463 MsG0180006029.01.T01:intron 40.0%
GCCCTAAAAAGGGCAAAAAA+GGG - Chr1:99048519-99048538 None:intergenic 40.0%
GCTGCATACAATACACCAAA+TGG + Chr1:99048441-99048460 MsG0180006029.01.T01:intron 40.0%
GGACCTAGAGATTAATAAGC+TGG - Chr1:99051407-99051426 None:intergenic 40.0%
GGAGTCAAATCACTAGAGAT+AGG - Chr1:99051468-99051487 None:intergenic 40.0%
GGTAACAACTCTCCTCATTA+TGG - Chr1:99051885-99051904 None:intergenic 40.0%
GGTATCCATGTTCTTACAGT+GGG + Chr1:99051066-99051085 MsG0180006029.01.T01:intron 40.0%
GTGAAATGTCCACAAACTTG+CGG + Chr1:99048948-99048967 MsG0180006029.01.T01:intron 40.0%
GTGCATGCAGATTCAAAACA+TGG + Chr1:99051238-99051257 MsG0180006029.01.T01:intron 40.0%
GTTGTAGACTCTACAGTCAT+CGG - Chr1:99049454-99049473 None:intergenic 40.0%
TAATGAGGAGAGTTGTTACC+TGG + Chr1:99051885-99051904 MsG0180006029.01.T01:intron 40.0%
TATTAGCTGGGATGGTAAAG+TGG + Chr1:99051134-99051153 MsG0180006029.01.T01:intron 40.0%
TCAGCAGTCACTAGATGATA+CGG + Chr1:99050858-99050877 MsG0180006029.01.T01:intron 40.0%
TGCAAAGAGTGGTTAATGAG+TGG + Chr1:99050245-99050264 MsG0180006029.01.T01:intron 40.0%
TGCCCTAAAAAGGGCAAAAA+AGG - Chr1:99048520-99048539 None:intergenic 40.0%
TGGTAGAAATTAGACTCAGG+TGG - Chr1:99051552-99051571 None:intergenic 40.0%
TGTATGTGACTGTAAGGTCA+CGG + Chr1:99048375-99048394 MsG0180006029.01.T01:intron 40.0%
! AAGATGGCATGTTACTTCCA+AGG - Chr1:99050350-99050369 None:intergenic 40.0%
! AGAAGAGAAAGAGTGTGAGA+TGG - Chr1:99047784-99047803 None:intergenic 40.0%
! ATCTCCATTTTCTCCACAGT+TGG - Chr1:99051201-99051220 None:intergenic 40.0%
! CATAATTTTCTCCACACTGC+TGG - Chr1:99049162-99049181 None:intergenic 40.0%
! CATGCAAGTTCACAGGTTTT+GGG - Chr1:99049601-99049620 None:intergenic 40.0%
! GAAGAGAAAGAGTGTGAGAT+GGG - Chr1:99047783-99047802 None:intergenic 40.0%
! GCATGCACTAAATTTGAGAC+TGG - Chr1:99051226-99051245 None:intergenic 40.0%
! TAAGCCACTGTCCTTTTGTA+AGG + Chr1:99049788-99049807 MsG0180006029.01.T01:intron 40.0%
! TCATGCAAGTTCACAGGTTT+TGG - Chr1:99049602-99049621 None:intergenic 40.0%
! TCGATTTTTCGCAGTGTGAT+GGG - Chr1:99047715-99047734 None:intergenic 40.0%
! TTAGGGCAGATTTTCATCGA+GGG + Chr1:99048334-99048353 MsG0180006029.01.T01:intron 40.0%
! TTCGATTTTTCGCAGTGTGA+TGG - Chr1:99047716-99047735 None:intergenic 40.0%
!! AATGCAAAGGCTATTGGTTC+AGG + Chr1:99051001-99051020 MsG0180006029.01.T01:CDS 40.0%
!! GAGAAAAAGTGTTGACTCCA+CGG - Chr1:99048055-99048074 None:intergenic 40.0%
!! GATTGGCTTGAAAACGAAAG+AGG + Chr1:99048226-99048245 MsG0180006029.01.T01:CDS 40.0%
!! TTTAGGGCAGATTTTCATCG+AGG + Chr1:99048333-99048352 MsG0180006029.01.T01:intron 40.0%
!!! CAGTGTGATGGGCTTTTTTA+TGG - Chr1:99047704-99047723 None:intergenic 40.0%
AAATGTCCACAAACTTGCGG+TGG + Chr1:99048951-99048970 MsG0180006029.01.T01:intron 45.0%
AACCCCAAAAGTGGGATAGA+GGG - Chr1:99048814-99048833 None:intergenic 45.0%
AAGCGATCATGCAAGTTCAC+AGG - Chr1:99049608-99049627 None:intergenic 45.0%
AAGGAGAGTAGATCAGATGG+AGG - Chr1:99051491-99051510 None:intergenic 45.0%
AAGGGCAAAAAAGGGTAACC+CGG - Chr1:99048511-99048530 None:intergenic 45.0%
AATGTCCACAAACTTGCGGT+GGG + Chr1:99048952-99048971 MsG0180006029.01.T01:intron 45.0%
ACCTGAAACAAACGTCCTTC+GGG - Chr1:99048077-99048096 None:intergenic 45.0%
AGGAGAGTAGATCAGATGGA+GGG - Chr1:99051490-99051509 None:intergenic 45.0%
CAACAACGTTGACATTGCCA+GGG + Chr1:99052428-99052447 MsG0180006029.01.T01:CDS 45.0%
CATTGCCAAAATGTGCCAGA+AGG - Chr1:99050980-99050999 None:intergenic 45.0%
CCACTTAGTGAGATAAGGCT+TGG - Chr1:99051326-99051345 None:intergenic 45.0%
CGACTCCACTTAGTGAGATA+AGG - Chr1:99051331-99051350 None:intergenic 45.0%
CGCAGAAAGGATCTTAAGAG+GGG - Chr1:99051635-99051654 None:intergenic 45.0%
CTCTCCAACTGTGGAGAAAA+TGG + Chr1:99051194-99051213 MsG0180006029.01.T01:intron 45.0%
CTGGCAATGTCAACGTTGTT+GGG - Chr1:99052429-99052448 None:intergenic 45.0%
CTTGAAAACGAAAGAGGGTG+TGG + Chr1:99048232-99048251 MsG0180006029.01.T01:CDS 45.0%
GACGCAGAAAGGATCTTAAG+AGG - Chr1:99051637-99051656 None:intergenic 45.0%
GACTACGCACATGTTTGTCT+TGG + Chr1:99048861-99048880 MsG0180006029.01.T01:intron 45.0%
GCATGTAGAGAGAAGACCTA+TGG - Chr1:99051524-99051543 None:intergenic 45.0%
GGAAGGTGATGAAGAATCCA+TGG + Chr1:99049507-99049526 MsG0180006029.01.T01:CDS 45.0%
GGCGAAACCCCAAAGAATTA+AGG - Chr1:99052004-99052023 None:intergenic 45.0%
GGGGTATAAAGATGATACGC+TGG - Chr1:99052459-99052478 None:intergenic 45.0%
GTATGTGACTGTAAGGTCAC+GGG + Chr1:99048376-99048395 MsG0180006029.01.T01:intron 45.0%
GTGCGATAAAAGAGAGAGAG+AGG - Chr1:99047914-99047933 None:intergenic 45.0%
TACCTAAAAGACCTCTCGCT+GGG - Chr1:99047751-99047770 None:intergenic 45.0%
TACGCACATGTTTGTCTTGG+TGG + Chr1:99048864-99048883 MsG0180006029.01.T01:intron 45.0%
TCATCTTTATACCCCGTCTG+AGG + Chr1:99052464-99052483 MsG0180006029.01.T01:CDS 45.0%
TTACCTAAAAGACCTCTCGC+TGG - Chr1:99047752-99047771 None:intergenic 45.0%
TTCTCCATTCTCTCCTCGAA+TGG + Chr1:99051845-99051864 MsG0180006029.01.T01:intron 45.0%
TTGGCATCTTACCCCCAATT+AGG + Chr1:99050704-99050723 MsG0180006029.01.T01:intron 45.0%
! ACACGTTTGGATGTGCGTTT+TGG - Chr1:99048983-99049002 None:intergenic 45.0%
! ACTGCATAAAAATGGCGGAG+CGG - Chr1:99047829-99047848 None:intergenic 45.0%
! CATTTTCTCCACAGTTGGAG+AGG - Chr1:99051196-99051215 None:intergenic 45.0%
! CCAAGCCTTATCTCACTAAG+TGG + Chr1:99051323-99051342 MsG0180006029.01.T01:intron 45.0%
! CTGATCCTTCTGGCACATTT+TGG + Chr1:99050972-99050991 MsG0180006029.01.T01:CDS 45.0%
! GGCACCTTTTGAACCATAAC+AGG + Chr1:99050665-99050684 MsG0180006029.01.T01:intron 45.0%
! TAGGGCAGATTTTCATCGAG+GGG + Chr1:99048335-99048354 MsG0180006029.01.T01:intron 45.0%
! TCATCCCTCTATCCCACTTT+TGG + Chr1:99048807-99048826 MsG0180006029.01.T01:intron 45.0%
! TTACACAAGAGGCTGTTTCC+AGG - Chr1:99048409-99048428 None:intergenic 45.0%
! TTTTCATCGAGGGGTAACCT+TGG + Chr1:99048344-99048363 MsG0180006029.01.T01:intron 45.0%
!! AAAGAAGTGATGGGCGAAGA+TGG - Chr1:99050366-99050385 None:intergenic 45.0%
!! ATCCCTCTATCCCACTTTTG+GGG + Chr1:99048809-99048828 MsG0180006029.01.T01:intron 45.0%
!! CATCCCTCTATCCCACTTTT+GGG + Chr1:99048808-99048827 MsG0180006029.01.T01:intron 45.0%
!! GCTATTGGTTCAGGATCAGA+AGG + Chr1:99051010-99051029 MsG0180006029.01.T01:CDS 45.0%
!!! GTCAACACTTTTTCTCCCGA+AGG + Chr1:99048059-99048078 MsG0180006029.01.T01:CDS 45.0%
!!! AATTTTTTTTTGTTAATTTA+GGG + Chr1:99048317-99048336 MsG0180006029.01.T01:intron 5.0%
!!! TAATTTTTTTTTGTTAATTT+AGG + Chr1:99048316-99048335 MsG0180006029.01.T01:intron 5.0%
AAAATAGCGCCGCTATGGTG+AGG + Chr1:99048691-99048710 MsG0180006029.01.T01:intron 50.0%
AGGATGCAGACCCCATAATG+AGG + Chr1:99051870-99051889 MsG0180006029.01.T01:intron 50.0%
ATCACAGCTTCCACCTCAGA+CGG - Chr1:99052480-99052499 None:intergenic 50.0%
ATGTCCACAAACTTGCGGTG+GGG + Chr1:99048953-99048972 MsG0180006029.01.T01:intron 50.0%
ATTGCTGGCCATGACGAGAA+TGG + Chr1:99049981-99050000 MsG0180006029.01.T01:CDS 50.0%
CAAACCAAAAACCCAGCGAG+AGG + Chr1:99047737-99047756 MsG0180006029.01.T01:five_prime_UTR 50.0%
CAACCCCAAAAGTGGGATAG+AGG - Chr1:99048815-99048834 None:intergenic 50.0%
CAGCTTGGATCAACTGCGAT+TGG + Chr1:99048209-99048228 MsG0180006029.01.T01:intron 50.0%
CATTCTCTCCTCGAATGGAG+AGG + Chr1:99051850-99051869 MsG0180006029.01.T01:intron 50.0%
CCAACAACGTTGACATTGCC+AGG + Chr1:99052427-99052446 MsG0180006029.01.T01:CDS 50.0%
CCTGGCAATGTCAACGTTGT+TGG - Chr1:99052430-99052449 None:intergenic 50.0%
CTCTCCATTCGAGGAGAGAA+TGG - Chr1:99051852-99051871 None:intergenic 50.0%
CTTTGGCAGTCTCGACCATT+TGG + Chr1:99049945-99049964 MsG0180006029.01.T01:intron 50.0%
GCACATGTTTGTCTTGGTGG+TGG + Chr1:99048867-99048886 MsG0180006029.01.T01:intron 50.0%
GCGTAGTCAATCCTGCATTG+TGG - Chr1:99048849-99048868 None:intergenic 50.0%
GCGTATTACTTCGCCTCTAC+TGG + Chr1:99048271-99048290 MsG0180006029.01.T01:CDS 50.0%
GGAGAGTAGATCAGATGGAG+GGG - Chr1:99051489-99051508 None:intergenic 50.0%
GTCAATCCTGCATTGTGGTG+CGG - Chr1:99048844-99048863 None:intergenic 50.0%
TATAGATGACGAACCCTCGC+TGG + Chr1:99051606-99051625 MsG0180006029.01.T01:intron 50.0%
TCACATACACAGTTGCGCCA+AGG - Chr1:99048364-99048383 None:intergenic 50.0%
TCAGTAGGGGGACAAACAAC+TGG - Chr1:99052360-99052379 None:intergenic 50.0%
TCAGTTTAGCAGTGCGGAGT+GGG + Chr1:99048741-99048760 MsG0180006029.01.T01:intron 50.0%
TCCCGAAGGACGTTTGTTTC+AGG + Chr1:99048073-99048092 MsG0180006029.01.T01:CDS 50.0%
TCTCGTCATGGCCAGCAATA+AGG - Chr1:99049980-99049999 None:intergenic 50.0%
TCTTTATACCCCGTCTGAGG+TGG + Chr1:99052467-99052486 MsG0180006029.01.T01:CDS 50.0%
! AACCCAGCGAGAGGTCTTTT+AGG + Chr1:99047746-99047765 MsG0180006029.01.T01:five_prime_UTR 50.0%
! AAGACCTCTCGCTGGGTTTT+TGG - Chr1:99047744-99047763 None:intergenic 50.0%
! CACATTGGCTGTGCAATGAG+TGG + Chr1:99049194-99049213 MsG0180006029.01.T01:CDS 50.0%
! CATAAAAATGGCGGAGCGGA+GGG - Chr1:99047825-99047844 None:intergenic 50.0%
! GCATGCACGAGTTGAAACTC+AGG + Chr1:99049247-99049266 MsG0180006029.01.T01:CDS 50.0%
! GGAGTGTCTCTCCTTATTGC+TGG + Chr1:99049966-99049985 MsG0180006029.01.T01:CDS 50.0%
!! CTGGACTATTGGTCTTGCTG+AGG + Chr1:99050921-99050940 MsG0180006029.01.T01:intron 50.0%
AAGGTCACGGGTTCAAGTCC+TGG + Chr1:99048388-99048407 MsG0180006029.01.T01:intron 55.0%
AGCGCAAAATAGCGCCGCTA+TGG + Chr1:99048686-99048705 MsG0180006029.01.T01:intron 55.0%
AGTTTAGCAGTGCGGAGTGG+GGG + Chr1:99048743-99048762 MsG0180006029.01.T01:intron 55.0%
ATCACCTTCCCCAAAGCGCA+AGG - Chr1:99049497-99049516 None:intergenic 55.0%
ATGATACGCTGGAGCAACCC+TGG - Chr1:99052448-99052467 None:intergenic 55.0%
CAGTTTAGCAGTGCGGAGTG+GGG + Chr1:99048742-99048761 MsG0180006029.01.T01:intron 55.0%
GAGCGGAGGGTTGAGAAATC+GGG - Chr1:99047812-99047831 None:intergenic 55.0%
GAGCGGTCAACCCCAAAAGT+GGG - Chr1:99048822-99048841 None:intergenic 55.0%
GGAGCGGAGGGTTGAGAAAT+CGG - Chr1:99047813-99047832 None:intergenic 55.0%
GGCTAGGTCCATTCTCGTCA+TGG - Chr1:99049992-99050011 None:intergenic 55.0%
GTCAGTTTAGCAGTGCGGAG+TGG + Chr1:99048740-99048759 MsG0180006029.01.T01:intron 55.0%
GTCTGCATCCTCTCCATTCG+AGG - Chr1:99051861-99051880 None:intergenic 55.0%
TCACAGCTTCCACCTCAGAC+GGG - Chr1:99052479-99052498 None:intergenic 55.0%
TGTCCACAAACTTGCGGTGG+GGG + Chr1:99048954-99048973 MsG0180006029.01.T01:intron 55.0%
TTAAGAGGGGTGACCAGCGA+GGG - Chr1:99051622-99051641 None:intergenic 55.0%
! GCATAAAAATGGCGGAGCGG+AGG - Chr1:99047826-99047845 None:intergenic 55.0%
!! GTGACCTAGCCTTGCGCTTT+GGG + Chr1:99049485-99049504 MsG0180006029.01.T01:CDS 55.0%
!! TGACCTAGCCTTGCGCTTTG+GGG + Chr1:99049486-99049505 MsG0180006029.01.T01:CDS 55.0%
!! TGTGACCTAGCCTTGCGCTT+TGG + Chr1:99049484-99049503 MsG0180006029.01.T01:CDS 55.0%
ACTGAAGCTCCCGCATACGC+AGG - Chr1:99048485-99048504 None:intergenic 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG + Chr1:99048489-99048508 MsG0180006029.01.T01:intron 60.0%
CACAGCTTCCACCTCAGACG+GGG - Chr1:99052478-99052497 None:intergenic 60.0%
CACTGCTGGGCTCCTGAAAG+TGG - Chr1:99049148-99049167 None:intergenic 60.0%
CTCCACAGTTGGAGAGGAGC+TGG - Chr1:99051190-99051209 None:intergenic 60.0%
CTGAAGCTCCCGCATACGCA+GGG - Chr1:99048484-99048503 None:intergenic 60.0%
CTTAAGAGGGGTGACCAGCG+AGG - Chr1:99051623-99051642 None:intergenic 60.0%
CTTCCCCAAAGCGCAAGGCT+AGG - Chr1:99049492-99049511 None:intergenic 60.0%
CTTTCAGGAGCCCAGCAGTG+TGG + Chr1:99049148-99049167 MsG0180006029.01.T01:intron 60.0%
GGAGCGGTCAACCCCAAAAG+TGG - Chr1:99048823-99048842 None:intergenic 60.0%
GTCCAGCTCCTCTCCAACTG+TGG + Chr1:99051185-99051204 MsG0180006029.01.T01:intron 60.0%
TCACCCCCACCGCAAGTTTG+TGG - Chr1:99048960-99048979 None:intergenic 60.0%
TCCTGCATTGTGGTGCGGAG+CGG - Chr1:99048839-99048858 None:intergenic 60.0%
! CAAATGGTGGGACCCCTTCC+CGG + Chr1:99048457-99048476 MsG0180006029.01.T01:intron 60.0%
!! CTAGCCTTGCGCTTTGGGGA+AGG + Chr1:99049490-99049509 MsG0180006029.01.T01:CDS 60.0%
ACCGCTCCGCACCACAATGC+AGG + Chr1:99048835-99048854 MsG0180006029.01.T01:intron 65.0%
CATACGCAGGGTCCGGGAAG+GGG - Chr1:99048472-99048491 None:intergenic 65.0%
CGGGAAGGGGTCCCACCATT+TGG - Chr1:99048459-99048478 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG + Chr1:99048472-99048491 MsG0180006029.01.T01:intron 65.0%
GCATACGCAGGGTCCGGGAA+GGG - Chr1:99048473-99048492 None:intergenic 65.0%
TGCGGGAGCTTCAGTGCACC+GGG + Chr1:99048490-99048509 MsG0180006029.01.T01:intron 65.0%
TTCCCGGACCCTGCGTATGC+GGG + Chr1:99048473-99048492 MsG0180006029.01.T01:intron 65.0%
CGCATACGCAGGGTCCGGGA+AGG - Chr1:99048474-99048493 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG - Chr1:99048478-99048497 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG - Chr1:99048479-99048498 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 99047676 99052770 99047676 ID=MsG0180006029.01;Name=MsG0180006029.01
Chr1 mRNA 99047676 99052770 99047676 ID=MsG0180006029.01.T01;Parent=MsG0180006029.01;Name=MsG0180006029.01.T01;_AED=0.49;_eAED=0.49;_QI=129|1|1|1|0.66|0.8|10|258|237
Chr1 exon 99047676 99047767 99047676 ID=MsG0180006029.01.T01:exon:51018;Parent=MsG0180006029.01.T01
Chr1 exon 99047848 99047898 99047848 ID=MsG0180006029.01.T01:exon:51019;Parent=MsG0180006029.01.T01
Chr1 exon 99052420 99052770 99052420 ID=MsG0180006029.01.T01:exon:51027;Parent=MsG0180006029.01.T01
Chr1 five_prime_UTR 99047676 99047767 99047676 ID=MsG0180006029.01.T01:five_prime_utr;Parent=MsG0180006029.01.T01
Chr1 five_prime_UTR 99047848 99047884 99047848 ID=MsG0180006029.01.T01:five_prime_utr;Parent=MsG0180006029.01.T01
Chr1 CDS 99047885 99047898 99047885 ID=MsG0180006029.01.T01:cds;Parent=MsG0180006029.01.T01
Chr1 CDS 99048040 99048121 99048040 ID=MsG0180006029.01.T01:cds;Parent=MsG0180006029.01.T01
Chr1 CDS 99048212 99048292 99048212 ID=MsG0180006029.01.T01:cds;Parent=MsG0180006029.01.T01
Chr1 CDS 99049155 99049268 99049155 ID=MsG0180006029.01.T01:cds;Parent=MsG0180006029.01.T01
Chr1 CDS 99049427 99049528 99049427 ID=MsG0180006029.01.T01:cds;Parent=MsG0180006029.01.T01
Chr1 CDS 99049954 99050012 99049954 ID=MsG0180006029.01.T01:cds;Parent=MsG0180006029.01.T01
Chr1 CDS 99050964 99051066 99050964 ID=MsG0180006029.01.T01:cds;Parent=MsG0180006029.01.T01
Chr1 CDS 99052262 99052327 99052262 ID=MsG0180006029.01.T01:cds;Parent=MsG0180006029.01.T01
Chr1 CDS 99052420 99052512 99052420 ID=MsG0180006029.01.T01:cds;Parent=MsG0180006029.01.T01
Chr1 three_prime_UTR 99052513 99052770 99052513 ID=MsG0180006029.01.T01:three_prime_utr;Parent=MsG0180006029.01.T01
Chr1 mRNA 99047720 99052768 99047720 ID=MsG0180006029.01.T02;Parent=MsG0180006029.01;Name=MsG0180006029.01.T02;_AED=0.49;_eAED=0.49;_QI=165|1|1|1|0.75|0.88|9|256|237
Chr1 exon 99047720 99047898 99047720 ID=MsG0180006029.01.T02:exon:51028;Parent=MsG0180006029.01.T02
Chr1 exon 99052420 99052768 99052420 ID=MsG0180006029.01.T02:exon:51029;Parent=MsG0180006029.01.T02
Chr1 five_prime_UTR 99047720 99047884 99047720 ID=MsG0180006029.01.T02:five_prime_utr;Parent=MsG0180006029.01.T02
Chr1 CDS 99047885 99047898 99047885 ID=MsG0180006029.01.T02:cds;Parent=MsG0180006029.01.T02
Chr1 CDS 99048040 99048121 99048040 ID=MsG0180006029.01.T02:cds;Parent=MsG0180006029.01.T02
Chr1 CDS 99048212 99048292 99048212 ID=MsG0180006029.01.T02:cds;Parent=MsG0180006029.01.T02
Chr1 CDS 99049155 99049268 99049155 ID=MsG0180006029.01.T02:cds;Parent=MsG0180006029.01.T02
Chr1 CDS 99049427 99049528 99049427 ID=MsG0180006029.01.T02:cds;Parent=MsG0180006029.01.T02
Chr1 CDS 99049954 99050012 99049954 ID=MsG0180006029.01.T02:cds;Parent=MsG0180006029.01.T02
Chr1 CDS 99050964 99051066 99050964 ID=MsG0180006029.01.T02:cds;Parent=MsG0180006029.01.T02
Chr1 CDS 99052262 99052327 99052262 ID=MsG0180006029.01.T02:cds;Parent=MsG0180006029.01.T02
Chr1 CDS 99052420 99052512 99052420 ID=MsG0180006029.01.T02:cds;Parent=MsG0180006029.01.T02
Chr1 three_prime_UTR 99052513 99052768 99052513 ID=MsG0180006029.01.T02:three_prime_utr;Parent=MsG0180006029.01.T02
Gene Sequence

>MsG0180006029.01.T02

ATGTTTCTCACAAGAACTGAGTATGACCGTGGAGTCAACACTTTTTCTCCCGAAGGACGTTTGTTTCAGGTTGAATATGCAATTGAAGCTATTAAGCTTGGATCAACTGCGATTGGCTTGAAAACGAAAGAGGGTGTGGTTCTTGCTGTTGAAAAGCGTATTACTTCGCCTCTACTGGAGCCCAGCAGTGTGGAGAAAATTATGGAAATTGATGATCACATTGGCTGTGCAATGAGTGGATTGATTGCTGATGCTCGTACACTTGTTGAGCATGCACGAGTTGAAACTCAGAATCACAGGTTCTCTTATGGTGAACCGATGACTGTAGAGTCTACAACTCAAGCTCTTTGTGACCTAGCCTTGCGCTTTGGGGAAGGTGATGAAGAATCCATGTCTCGACCATTTGGAGTGTCTCTCCTTATTGCTGGCCATGACGAGAATGGACCTAGCCTATATTACACTGATCCTTCTGGCACATTTTGGCAATGCAATGCAAAGGCTATTGGTTCAGGATCAGAAGGTGCTGACAGTTCTCTGCAAGAACAATTCAACAAGGACTTAACTCTTCAAGAAGCTGAGACTATTGCTTTATCAATTCTGAAGCAAGTTATGGAAGAGAAGGTCACTCCCAACAACGTTGACATTGCCAGGGTTGCTCCAGCGTATCATCTTTATACCCCGTCTGAGGTGGAAGCTGTGATAAGTCGCCTATGA

>MsG0180006029.01.T01

ATGTTTCTCACAAGAACTGAGTATGACCGTGGAGTCAACACTTTTTCTCCCGAAGGACGTTTGTTTCAGGTTGAATATGCAATTGAAGCTATTAAGCTTGGATCAACTGCGATTGGCTTGAAAACGAAAGAGGGTGTGGTTCTTGCTGTTGAAAAGCGTATTACTTCGCCTCTACTGGAGCCCAGCAGTGTGGAGAAAATTATGGAAATTGATGATCACATTGGCTGTGCAATGAGTGGATTGATTGCTGATGCTCGTACACTTGTTGAGCATGCACGAGTTGAAACTCAGAATCACAGGTTCTCTTATGGTGAACCGATGACTGTAGAGTCTACAACTCAAGCTCTTTGTGACCTAGCCTTGCGCTTTGGGGAAGGTGATGAAGAATCCATGTCTCGACCATTTGGAGTGTCTCTCCTTATTGCTGGCCATGACGAGAATGGACCTAGCCTATATTACACTGATCCTTCTGGCACATTTTGGCAATGCAATGCAAAGGCTATTGGTTCAGGATCAGAAGGTGCTGACAGTTCTCTGCAAGAACAATTCAACAAGGACTTAACTCTTCAAGAAGCTGAGACTATTGCTTTATCAATTCTGAAGCAAGTTATGGAAGAGAAGGTCACTCCCAACAACGTTGACATTGCCAGGGTTGCTCCAGCGTATCATCTTTATACCCCGTCTGAGGTGGAAGCTGTGATAAGTCGCCTATGA
Protein sequence

>MsG0180006029.01.T02

MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPAYHLYTPSEVEAVISRL*

>MsG0180006029.01.T01

MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLTLQEAETIALSILKQVMEEKVTPNNVDIARVAPAYHLYTPSEVEAVISRL*