AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780040855.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040855.01.T01 MTR_7g099850 75.622 201 5 1 1 157 124 324 9.12e-104 300
MsG0780040855.01.T01 MTR_1g068970 66.169 201 23 2 1 157 57 256 1.34e-89 261
MsG0780040855.01.T01 MTR_1g068970 66.169 201 23 2 1 157 124 323 2.06e-89 263
MsG0780040855.01.T01 MTR_1g100305 49.744 195 53 2 1 151 119 312 3.36e-61 191
MsG0780040855.01.T01 MTR_1g100315 50.769 195 51 2 1 151 119 312 3.94e-60 189
MsG0780040855.01.T01 MTR_1g100395 50.769 195 51 2 1 151 119 312 1.09e-59 187
MsG0780040855.01.T01 MTR_8g098415 48.731 197 56 2 1 153 62 257 4.23e-58 182
MsG0780040855.01.T01 MTR_8g098415 48.731 197 56 2 1 153 119 314 2.35e-57 181
MsG0780040855.01.T01 MTR_8g098415 48.205 195 56 2 1 151 119 312 7.13e-57 180
MsG0780040855.01.T01 MTR_6g053550 49.744 195 50 2 4 151 130 323 9.73e-57 180
MsG0780040855.01.T01 MTR_1g100335 49.231 195 54 2 1 151 119 312 1.37e-56 179
MsG0780040855.01.T01 MTR_3g077410 44.271 192 61 2 5 151 131 321 1.39e-44 149
MsG0780040855.01.T01 MTR_1g100335 60.870 115 43 2 1 114 119 232 1.87e-42 142
MsG0780040855.01.T01 MTR_1g100335 60.870 115 43 2 1 114 119 232 3.82e-42 141
MsG0780040855.01.T01 MTR_8g098415 67.000 100 32 1 1 100 119 217 3.26e-40 135
MsG0780040855.01.T01 MTR_8g099995 39.604 202 66 3 7 157 131 327 2.30e-39 136
MsG0780040855.01.T01 MTR_4g105310 39.896 193 70 2 5 152 142 333 3.22e-38 133
MsG0780040855.01.T01 MTR_6g053600 61.261 111 41 2 3 112 115 224 3.26e-37 129
MsG0780040855.01.T01 MTR_4g105310 47.748 111 56 2 5 114 142 251 6.90e-26 99.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780040855.01.T01 AT5G02540 58.500 200 38 2 1 156 123 321 4.17e-78 235
MsG0780040855.01.T01 AT2G37540 57.000 200 41 2 1 156 123 321 4.08e-75 227
MsG0780040855.01.T01 AT4G23420 50.505 198 52 2 1 153 136 332 5.10e-62 194
MsG0780040855.01.T01 AT4G23420 50.505 198 52 2 1 153 119 315 6.52e-62 193
MsG0780040855.01.T01 AT4G23420 50.505 198 52 2 1 153 119 315 6.52e-62 193
MsG0780040855.01.T01 AT4G23430 50.000 200 54 2 1 155 119 317 1.19e-61 193
MsG0780040855.01.T01 AT4G23430 49.500 200 53 3 1 155 119 315 7.82e-59 186
MsG0780040855.01.T01 AT4G11410 47.423 194 57 2 1 150 119 311 3.61e-55 176
MsG0780040855.01.T01 AT2G37540 57.639 144 56 4 1 143 123 262 1.11e-52 168
MsG0780040855.01.T01 AT4G23430 45.500 200 53 3 1 155 119 307 9.63e-52 167
MsG0780040855.01.T01 AT4G23430 45.000 200 52 4 1 155 119 305 7.78e-49 159
MsG0780040855.01.T01 AT4G23420 60.177 113 43 2 1 112 119 230 1.03e-42 142
MsG0780040855.01.T01 AT4G23420 60.177 113 43 2 1 112 119 230 1.24e-42 142
MsG0780040855.01.T01 AT4G24050 41.117 197 68 3 7 156 130 325 6.93e-40 137
MsG0780040855.01.T01 AT4G11410 58.772 114 43 3 1 112 119 230 1.78e-39 134
MsG0780040855.01.T01 AT5G50130 40.201 199 72 3 1 153 92 289 1.35e-35 125
MsG0780040855.01.T01 AT5G50130 40.201 199 71 4 1 152 92 289 1.78e-34 122
MsG0780040855.01.T01 AT5G50130 40.201 199 71 4 1 152 125 322 3.40e-34 122
MsG0780040855.01.T01 AT1G64590 38.974 195 67 4 7 152 130 321 4.11e-31 114
MsG0780040855.01.T01 AT4G24050 48.649 111 53 3 7 114 130 239 2.72e-26 100
MsG0780040855.01.T01 AT5G50130 47.414 116 58 3 1 114 92 206 2.52e-25 98.6
MsG0780040855.01.T01 AT5G50130 47.414 116 58 3 1 114 125 239 2.53e-25 97.8
MsG0780040855.01.T01 AT5G50130 47.414 116 58 3 1 114 125 239 5.87e-25 98.2
MsG0780040855.01.T01 AT5G50130 47.009 117 58 4 1 114 92 207 3.20e-24 95.5
MsG0780040855.01.T01 AT5G50130 47.009 117 58 4 1 114 125 240 3.54e-24 94.7
MsG0780040855.01.T01 AT5G50130 47.009 117 58 4 1 114 125 240 8.14e-24 95.1

Find 63 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGCTTGCCCGTTTATTTA+CGG 0.283519 7:+83417342 MsG0780040855.01.T01:three_prime_UTR
CCAAGCTTGAAAGGTGTAAC+TGG 0.309880 7:+83417129 MsG0780040855.01.T01:CDS
CCATCACCGTTTCAAATCTT+CGG 0.334413 7:+83412964 MsG0780040855.01.T01:five_prime_UTR
ATTGACCACACTTTGCTGTT+TGG 0.337782 7:+83417269 MsG0780040855.01.T01:exon
TAACTTTAACCGTAAATAAA+CGG 0.344177 7:-83417351 None:intergenic
AACAGTTAGCAAAGAAACTT+TGG 0.348947 7:+83417205 MsG0780040855.01.T01:CDS
CAGTTACACCTTTCAAGCTT+GGG 0.356891 7:-83417128 None:intergenic
TGCAAAAGCAACTGGAATAG+AGG 0.360987 7:+83415696 MsG0780040855.01.T01:CDS
AACAACCATACGAATGATTC+TGG 0.368751 7:-83413093 None:intergenic
CCAGTTACACCTTTCAAGCT+TGG 0.371917 7:-83417129 None:intergenic
GAAGATTTGTCAAGAGGAAA+TGG 0.402419 7:-83415651 None:intergenic
ATCACAATAACACACGTGTT+TGG 0.410384 7:-83417393 None:intergenic
AACTTTAACCGTAAATAAAC+GGG 0.411888 7:-83417350 None:intergenic
ATGTAATATGTTGGCTAACT+TGG 0.417541 7:-83415935 None:intergenic
AATAATAAGTTATGATAAAG+TGG 0.420925 7:-83417296 None:intergenic
TAGATACACTTACTTTAGAA+AGG 0.428762 7:+83415750 MsG0780040855.01.T01:CDS
AAACAAACTGCAAAAGCAAC+TGG 0.438605 7:+83415688 MsG0780040855.01.T01:CDS
TTGAAACGGTGATGGAAGAT+AGG 0.445417 7:-83412956 None:intergenic
ACAGTTAGCAAAGAAACTTT+GGG 0.459816 7:+83417206 MsG0780040855.01.T01:CDS
CCGCCAACGGCAGTAGTTGA+AGG 0.463154 7:+83413011 MsG0780040855.01.T01:five_prime_UTR
GTTTCAAATCTTCGATTCCA+TGG 0.464144 7:+83412986 MsG0780040855.01.T01:five_prime_UTR
TCCCTCCTCTGAGAGTTTGA+AGG 0.466137 7:-83415241 None:intergenic
TTCATTTGCATGTAATATGT+TGG 0.469410 7:-83415944 None:intergenic
CGATTCCATGGCGCCGCCAA+CGG 0.471605 7:+83412998 MsG0780040855.01.T01:five_prime_UTR
CAATTTGCAACAAACCATCT+TGG 0.474711 7:+83415273 MsG0780040855.01.T01:CDS
GTTAAAGTTATTGTTCTATG+AGG 0.474931 7:+83417364 MsG0780040855.01.T01:three_prime_UTR
TGTAACTGGGAAGTACTTTG+TGG 0.484126 7:+83417143 MsG0780040855.01.T01:CDS
TACTGCCGTTGGCGGCGCCA+TGG 0.486794 7:-83413003 None:intergenic
TCATTCGTATGGTTGTTTCC+TGG 0.491656 7:+83413099 MsG0780040855.01.T01:five_prime_UTR
TATTCTAGCAAGAAGGCCTA+TGG 0.494558 7:+83415907 MsG0780040855.01.T01:CDS
TATCAGTTATTCTAGCAAGA+AGG 0.496219 7:+83415900 MsG0780040855.01.T01:intron
GGAAGACAACAAGCCGGTGG+TGG 0.507621 7:+83413059 MsG0780040855.01.T01:five_prime_UTR
CAAGAAGAAGATTTGTCAAG+AGG 0.511567 7:-83415657 None:intergenic
TGAACTCTCTCGTCGCCTGC+AGG 0.512345 7:+83415963 MsG0780040855.01.T01:CDS
CCCTCCTCTGAGAGTTTGAA+GGG 0.512532 7:-83415240 None:intergenic
TTGAAACCGAAGATTTGAAA+CGG 0.515356 7:-83412970 None:intergenic
GAAATGAGACATTACCAAGA+TGG 0.521303 7:-83415287 None:intergenic
GCAAAAGCAACTGGAATAGA+GGG 0.523925 7:+83415697 MsG0780040855.01.T01:CDS
AGATACACTTACTTTAGAAA+GGG 0.527699 7:+83415751 MsG0780040855.01.T01:CDS
CTTAACCAGAATCATTCGTA+TGG 0.528861 7:+83413088 MsG0780040855.01.T01:five_prime_UTR
GCACTCCACCCAAGCTTGAA+AGG 0.529412 7:+83417120 MsG0780040855.01.T01:CDS
CCTTCAACTACTGCCGTTGG+CGG 0.529608 7:-83413011 None:intergenic
GGCTAACTTGGACTGTCCAT+AGG 0.541676 7:-83415923 None:intergenic
AATATTGGCAGAAACAATGC+TGG 0.547510 7:+83415204 MsG0780040855.01.T01:intron
CCGCCTTCAACTACTGCCGT+TGG 0.551452 7:-83413014 None:intergenic
TTACACCTTTCAAGCTTGGG+TGG 0.554418 7:-83417125 None:intergenic
CCGGCTTGTTGTCTTCCTTG+CGG 0.554826 7:-83413053 None:intergenic
CCGAAGATTTGAAACGGTGA+TGG 0.558181 7:-83412964 None:intergenic
GACGCTGATGCAGCACCGCA+AGG 0.559123 7:+83413038 MsG0780040855.01.T01:five_prime_UTR
CCCCTTCAAACTCTCAGAGG+AGG 0.559987 7:+83415239 MsG0780040855.01.T01:CDS
CCCTTCAAACTCTCAGAGGA+GGG 0.579093 7:+83415240 MsG0780040855.01.T01:CDS
GGTTAAGCTAAATCCACCAC+CGG 0.584537 7:-83413072 None:intergenic
CAAGCTTGAAAGGTGTAACT+GGG 0.589171 7:+83417130 MsG0780040855.01.T01:CDS
CTGCCCCTTCAAACTCTCAG+AGG 0.632914 7:+83415236 MsG0780040855.01.T01:CDS
GAGTGCAACATAACATGTCG+TGG 0.635678 7:-83417103 None:intergenic
GTGAACCAAACAGCAAAGTG+TGG 0.649072 7:-83417274 None:intergenic
CCGCAAGGAAGACAACAAGC+CGG 0.649134 7:+83413053 MsG0780040855.01.T01:five_prime_UTR
ACACGTGTGTTATTGTGATG+TGG 0.658361 7:+83417397 MsG0780040855.01.T01:three_prime_UTR
CCTCCTCTGAGAGTTTGAAG+GGG 0.662584 7:-83415239 None:intergenic
AAGCAACTGGAATAGAGGGG+AGG 0.690942 7:+83415701 MsG0780040855.01.T01:CDS
CAAGGAAGACAACAAGCCGG+TGG 0.696577 7:+83413056 MsG0780040855.01.T01:five_prime_UTR
CCAACGGCAGTAGTTGAAGG+CGG 0.703078 7:+83413014 MsG0780040855.01.T01:five_prime_UTR
CAAAAGCAACTGGAATAGAG+GGG 0.709374 7:+83415698 MsG0780040855.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATATAATTATTTAAAA+AGG + Chr7:83413759-83413778 MsG0780040855.01.T01:intron 0.0%
!! TTAAATTAATATATTATAAT+AGG + Chr7:83413449-83413468 MsG0780040855.01.T01:intron 0.0%
!! AAAAAAAAAAAAATTAATGC+AGG + Chr7:83414359-83414378 MsG0780040855.01.T01:intron 10.0%
!! ATAAATAAACATAAGTTATA+TGG + Chr7:83416648-83416667 MsG0780040855.01.T01:intron 10.0%
!!! AAATTGTTAGTAATAATTTT+GGG + Chr7:83416058-83416077 MsG0780040855.01.T01:intron 10.0%
!!! ACTCATATATATATTTTTTT+GGG + Chr7:83417057-83417076 MsG0780040855.01.T01:intron 10.0%
!!! ATATAAATTTGGTTTTTTTT+TGG - Chr7:83414700-83414719 None:intergenic 10.0%
!!! CTTTTAAAATAAAAATCAAA+CGG + Chr7:83413425-83413444 MsG0780040855.01.T01:intron 10.0%
!!! TATTTTTTTAAAGAGAAAAT+TGG + Chr7:83416685-83416704 MsG0780040855.01.T01:intron 10.0%
!!! TGTCTTTAAAAATATAAAAT+AGG - Chr7:83413651-83413670 None:intergenic 10.0%
!!! TTTGATTTTTATTTTAAAAG+AGG - Chr7:83413425-83413444 None:intergenic 10.0%
!!! TTTTGTTAAAAAATGTTTTA+TGG + Chr7:83415323-83415342 MsG0780040855.01.T01:intron 10.0%
!!! TTTTTTTTTTTTATAGTGTT+CGG - Chr7:83414894-83414913 None:intergenic 10.0%
!! AATAATAAGTTATGATAAAG+TGG - Chr7:83417299-83417318 None:intergenic 15.0%
!! ATACTTATGCTAATAATATA+AGG - Chr7:83416012-83416031 None:intergenic 15.0%
!! ATATATTATAATAGGATCTA+TGG + Chr7:83413457-83413476 MsG0780040855.01.T01:intron 15.0%
!! ATCTACATTTGAATTTATAT+TGG + Chr7:83416861-83416880 MsG0780040855.01.T01:intron 15.0%
!! CAATTCATAATATATATACA+AGG + Chr7:83414853-83414872 MsG0780040855.01.T01:intron 15.0%
!! TCATCTTAGATATATAAATT+TGG - Chr7:83414711-83414730 None:intergenic 15.0%
!! TTTATGAATAAATCAATAAC+CGG - Chr7:83415056-83415075 None:intergenic 15.0%
!!! CACTCATATATATATTTTTT+TGG + Chr7:83417056-83417075 MsG0780040855.01.T01:intron 15.0%
!!! CTTAATATATTTCAATGTTT+TGG + Chr7:83415142-83415161 MsG0780040855.01.T01:intron 15.0%
!!! GAAATTGTTAGTAATAATTT+TGG + Chr7:83416057-83416076 MsG0780040855.01.T01:intron 15.0%
!!! GTTTGATTTGTTTATAAAAT+TGG + Chr7:83416791-83416810 MsG0780040855.01.T01:intron 15.0%
!!! TGATTTTTATAATTAGTTTC+TGG + Chr7:83413228-83413247 MsG0780040855.01.T01:intron 15.0%
!!! TTATCTAACTTAATTCTTTT+AGG + Chr7:83416971-83416990 MsG0780040855.01.T01:intron 15.0%
!!! TTTTTTTTTTTATAGTGTTC+GGG - Chr7:83414893-83414912 None:intergenic 15.0%
!! AAAAAAAAAATTAATGCAGG+AGG + Chr7:83414362-83414381 MsG0780040855.01.T01:intron 20.0%
!! AAAAAAAAATGATGAAGAAG+AGG + Chr7:83413317-83413336 MsG0780040855.01.T01:intron 20.0%
!! AATAATTTAATCCAATGCAA+TGG - Chr7:83416415-83416434 None:intergenic 20.0%
!! AGAAGATCAATGATAAAAAA+GGG + Chr7:83415785-83415804 MsG0780040855.01.T01:CDS 20.0%
!! AGATATAAAAAAATAGACGT+TGG + Chr7:83414150-83414169 MsG0780040855.01.T01:intron 20.0%
!! ATACTTTGTGTTAAGTAATA+TGG + Chr7:83416365-83416384 MsG0780040855.01.T01:intron 20.0%
!! ATGAAAACAACAAATTAGTT+AGG + Chr7:83413605-83413624 MsG0780040855.01.T01:intron 20.0%
!! ATTATAAGCTAAAAACATTG+AGG - Chr7:83416843-83416862 None:intergenic 20.0%
!! TAACTTTAACCGTAAATAAA+CGG - Chr7:83417354-83417373 None:intergenic 20.0%
!! TAAGTATATAATGAGAGATA+TGG + Chr7:83416025-83416044 MsG0780040855.01.T01:intron 20.0%
!! TATAAATCAAGGAAAATTTG+TGG + Chr7:83416446-83416465 MsG0780040855.01.T01:intron 20.0%
!! TGAAAACAACAAATTAGTTA+GGG + Chr7:83413606-83413625 MsG0780040855.01.T01:intron 20.0%
!! TTATAAGCTAAAAACATTGA+GGG - Chr7:83416842-83416861 None:intergenic 20.0%
!!! ATAAATATTTTAGTGAGCAT+TGG - Chr7:83416604-83416623 None:intergenic 20.0%
!!! ATATTTGTCTTTTGTGTTTA+AGG - Chr7:83416280-83416299 None:intergenic 20.0%
!!! CAACCAAAATTTTTTATATC+TGG + Chr7:83414671-83414690 MsG0780040855.01.T01:intron 20.0%
!!! TAAGTTTTGGATTGAAATAT+TGG + Chr7:83415189-83415208 MsG0780040855.01.T01:intron 20.0%
!!! TGAATTTGACAATTAAGTTT+TGG + Chr7:83415176-83415195 MsG0780040855.01.T01:intron 20.0%
!!! TGACCAGATATAAAAAATTT+TGG - Chr7:83414677-83414696 None:intergenic 20.0%
!!! TTTTTTTTTTATAGTGTTCG+GGG - Chr7:83414892-83414911 None:intergenic 20.0%
! AACTCACTAATAAACACAAA+AGG - Chr7:83414098-83414117 None:intergenic 25.0%
! AACTTTAACCGTAAATAAAC+GGG - Chr7:83417353-83417372 None:intergenic 25.0%
! AATTTATGTTACCAAGTGTT+GGG - Chr7:83414315-83414334 None:intergenic 25.0%
! ACTTTAACCTCAAATATCTA+TGG - Chr7:83413507-83413526 None:intergenic 25.0%
! AGAGGTAACAATTAAGTAAT+AGG - Chr7:83415605-83415624 None:intergenic 25.0%
! AGTTAATTTCTTGCTTCATA+TGG + Chr7:83415840-83415859 MsG0780040855.01.T01:intron 25.0%
! ATGTAAATGTCATATCATAC+CGG + Chr7:83415034-83415053 MsG0780040855.01.T01:intron 25.0%
! CACAATACACTAATGATTAA+TGG - Chr7:83415546-83415565 None:intergenic 25.0%
! GAAAACAACAAATTAGTTAG+GGG + Chr7:83413607-83413626 MsG0780040855.01.T01:intron 25.0%
! GAGAAGATCAATGATAAAAA+AGG + Chr7:83415784-83415803 MsG0780040855.01.T01:CDS 25.0%
! GAGGTAACAATTAAGTAATA+GGG - Chr7:83415604-83415623 None:intergenic 25.0%
! GTATGATACTTATAACATTG+TGG - Chr7:83413876-83413895 None:intergenic 25.0%
! GTTAAAGTTATTGTTCTATG+AGG + Chr7:83417364-83417383 MsG0780040855.01.T01:three_prime_UTR 25.0%
! TAATTTATGTTACCAAGTGT+TGG - Chr7:83414316-83414335 None:intergenic 25.0%
! TATTATAATAGGATCTATGG+TGG + Chr7:83413460-83413479 MsG0780040855.01.T01:intron 25.0%
! TGTTAATTCAGTTGAATATG+TGG - Chr7:83415475-83415494 None:intergenic 25.0%
! TTAAATCTAATCCATTGCAT+TGG + Chr7:83416401-83416420 MsG0780040855.01.T01:intron 25.0%
! TTCATTTGCATGTAATATGT+TGG - Chr7:83415947-83415966 None:intergenic 25.0%
!! AGATACACTTACTTTAGAAA+GGG + Chr7:83415751-83415770 MsG0780040855.01.T01:CDS 25.0%
!! ATGATTGTTATTATCACTAG+AGG - Chr7:83416095-83416114 None:intergenic 25.0%
!! TAGATACACTTACTTTAGAA+AGG + Chr7:83415750-83415769 MsG0780040855.01.T01:CDS 25.0%
!! TCAGAAATTGTAGATTTTGT+AGG + Chr7:83413175-83413194 MsG0780040855.01.T01:intron 25.0%
!! TGATTGTTATTATCACTAGA+GGG - Chr7:83416094-83416113 None:intergenic 25.0%
!!! AACGTTGATTTTAGAACTTA+TGG + Chr7:83413575-83413594 MsG0780040855.01.T01:intron 25.0%
!!! AAGTTCTAAAATCAACGTTT+TGG - Chr7:83413574-83413593 None:intergenic 25.0%
!!! ACGTTGATTTTAGAACTTAT+GGG + Chr7:83413576-83413595 MsG0780040855.01.T01:intron 25.0%
!!! ATTGTTAGGTGATTTTTTAG+AGG - Chr7:83413149-83413168 None:intergenic 25.0%
!!! CAACAAATTTTCAGTTTTGT+TGG + Chr7:83413903-83413922 MsG0780040855.01.T01:intron 25.0%
!!! CGTCTATTTTTTTATATCTG+AGG - Chr7:83414149-83414168 None:intergenic 25.0%
!!! CTATTTTTTTATATCTGAGG+TGG - Chr7:83414146-83414165 None:intergenic 25.0%
!!! GATTAGATTTAACTTGCATT+TGG - Chr7:83416393-83416412 None:intergenic 25.0%
!!! GGATTAAATTATTTTGTGTG+TGG + Chr7:83416422-83416441 MsG0780040855.01.T01:intron 25.0%
!!! GTAATAATTTTGGGAAAAGA+AGG + Chr7:83416067-83416086 MsG0780040855.01.T01:intron 25.0%
!!! TTATTTTAAAAGAGGACCAT+TGG - Chr7:83413417-83413436 None:intergenic 25.0%
!!! TTATTTTTTGCATATGCACT+TGG - Chr7:83417186-83417205 None:intergenic 25.0%
!!! TTTCCTGTGTTATTTTTGTT+TGG - Chr7:83414483-83414502 None:intergenic 25.0%
AAAAATGATGAAGAAGAGGA+AGG + Chr7:83413321-83413340 MsG0780040855.01.T01:intron 30.0%
AACAATCATATCCTAACTAG+TGG + Chr7:83416106-83416125 MsG0780040855.01.T01:intron 30.0%
AACAGTTAGCAAAGAAACTT+TGG + Chr7:83417205-83417224 MsG0780040855.01.T01:CDS 30.0%
AAGCCAAACAAAAATAACAC+AGG + Chr7:83414477-83414496 MsG0780040855.01.T01:intron 30.0%
AAGTAGCTAAGAACAAACAT+GGG - Chr7:83414047-83414066 None:intergenic 30.0%
AATGATGAAGAAGATTTGTG+AGG + Chr7:83413291-83413310 MsG0780040855.01.T01:intron 30.0%
AATGGCCTAAGAAGTTAAAA+AGG - Chr7:83415636-83415655 None:intergenic 30.0%
ACAAACATTAAGATGTTGAG+AGG - Chr7:83414597-83414616 None:intergenic 30.0%
ACAGTTAGCAAAGAAACTTT+GGG + Chr7:83417206-83417225 MsG0780040855.01.T01:CDS 30.0%
ATAGAGTAGCATTAGACAAA+AGG - Chr7:83416323-83416342 None:intergenic 30.0%
ATGATGAAGAAGATTTGTGA+GGG + Chr7:83413292-83413311 MsG0780040855.01.T01:intron 30.0%
ATGGAGCATGCATATTAATT+TGG + Chr7:83416136-83416155 MsG0780040855.01.T01:intron 30.0%
ATGGCCTAAGAAGTTAAAAA+GGG - Chr7:83415635-83415654 None:intergenic 30.0%
ATTTCTGAACTCAGATTGTT+AGG - Chr7:83413163-83413182 None:intergenic 30.0%
CTAAAAACATTGAGGGTTAA+TGG - Chr7:83416835-83416854 None:intergenic 30.0%
CTAAAACTTACTATACAGCA+AGG - Chr7:83415574-83415593 None:intergenic 30.0%
CTGCAAATGTAAGAAAAAGT+GGG - Chr7:83415352-83415371 None:intergenic 30.0%
GAGTGATTACATGTTTCTTT+GGG - Chr7:83417041-83417060 None:intergenic 30.0%
GATTAATTCAGTTGAGTAGA+TGG + Chr7:83415399-83415418 MsG0780040855.01.T01:intron 30.0%
GTGACTTATCGTATTAAACT+AGG - Chr7:83414264-83414283 None:intergenic 30.0%
TAAGAAGAATATCTCATGAG+AGG - Chr7:83416236-83416255 None:intergenic 30.0%
TAAGTTAGATAAAATGCCTG+TGG - Chr7:83416963-83416982 None:intergenic 30.0%
TAATCATTAGTGTATTGTGC+TGG + Chr7:83415547-83415566 MsG0780040855.01.T01:intron 30.0%
TATCAGTTATTCTAGCAAGA+AGG + Chr7:83415900-83415919 MsG0780040855.01.T01:intron 30.0%
TATGAGATAGAAGGTAAGTT+TGG - Chr7:83416554-83416573 None:intergenic 30.0%
TGAGTGATTACATGTTTCTT+TGG - Chr7:83417042-83417061 None:intergenic 30.0%
TGCAAAATGTCACATTTGAT+AGG + Chr7:83417007-83417026 MsG0780040855.01.T01:intron 30.0%
TTAACCTCAAATATCTATGG+TGG - Chr7:83413504-83413523 None:intergenic 30.0%
TTAATGTGATTAACCAAGTG+TGG + Chr7:83415501-83415520 MsG0780040855.01.T01:intron 30.0%
TTACATGCACACAAGTTTAA+TGG - Chr7:83415020-83415039 None:intergenic 30.0%
TTGAAACCGAAGATTTGAAA+CGG - Chr7:83412973-83412992 None:intergenic 30.0%
TTGTGTGTGGTTATAAATCA+AGG + Chr7:83416435-83416454 MsG0780040855.01.T01:intron 30.0%
! ATGTAATATGTTGGCTAACT+TGG - Chr7:83415938-83415957 None:intergenic 30.0%
! TGTAGATTTTGTAGGAAAGA+AGG + Chr7:83413183-83413202 MsG0780040855.01.T01:intron 30.0%
!! TACATGTTTCTTTGGGTTTT+TGG - Chr7:83417034-83417053 None:intergenic 30.0%
!!! TGATCCCTTTTTAACTTCTT+AGG + Chr7:83415628-83415647 MsG0780040855.01.T01:intron 30.0%
AAACAAACTGCAAAAGCAAC+TGG + Chr7:83415688-83415707 MsG0780040855.01.T01:CDS 35.0%
AACAACCATACGAATGATTC+TGG - Chr7:83413096-83413115 None:intergenic 35.0%
AAGAAACATTGAATCTGCAG+AGG + Chr7:83414454-83414473 MsG0780040855.01.T01:intron 35.0%
AATATTGGCAGAAACAATGC+TGG + Chr7:83415204-83415223 MsG0780040855.01.T01:intron 35.0%
ATACAATCGAATGGAGAAAG+TGG + Chr7:83413931-83413950 MsG0780040855.01.T01:intron 35.0%
ATCACAATAACACACGTGTT+TGG - Chr7:83417396-83417415 None:intergenic 35.0%
CAAGAAGAAGATTTGTCAAG+AGG - Chr7:83415660-83415679 None:intergenic 35.0%
CAATTTGCAACAAACCATCT+TGG + Chr7:83415273-83415292 MsG0780040855.01.T01:CDS 35.0%
CTTAACCAGAATCATTCGTA+TGG + Chr7:83413088-83413107 MsG0780040855.01.T01:five_prime_UTR 35.0%
GAAATGAGACATTACCAAGA+TGG - Chr7:83415290-83415309 None:intergenic 35.0%
GAAGATTTGTCAAGAGGAAA+TGG - Chr7:83415654-83415673 None:intergenic 35.0%
GAAGGAAGAAGATGAAGAAA+TGG + Chr7:83413339-83413358 MsG0780040855.01.T01:intron 35.0%
GAAGTAGCTAAGAACAAACA+TGG - Chr7:83414048-83414067 None:intergenic 35.0%
GCTACTTCAATCTATGTCAT+CGG + Chr7:83414060-83414079 MsG0780040855.01.T01:intron 35.0%
GCTGCAAATGTAAGAAAAAG+TGG - Chr7:83415353-83415372 None:intergenic 35.0%
GTGAGCATTTATGAGATAGA+AGG - Chr7:83416563-83416582 None:intergenic 35.0%
GTTAAAAAGGGATCAGATAG+AGG - Chr7:83415623-83415642 None:intergenic 35.0%
GTTTCAAATCTTCGATTCCA+TGG + Chr7:83412986-83413005 MsG0780040855.01.T01:five_prime_UTR 35.0%
TATGCTTGCCCGTTTATTTA+CGG + Chr7:83417342-83417361 MsG0780040855.01.T01:three_prime_UTR 35.0%
TTCTTGCAGCAATGATAACA+CGG - Chr7:83414439-83414458 None:intergenic 35.0%
TTGGAGAGAATACAATCGAA+TGG + Chr7:83413922-83413941 MsG0780040855.01.T01:intron 35.0%
! CGCAGGTCTATTTTATCTTA+CGG - Chr7:83413390-83413409 None:intergenic 35.0%
! GTGACATTTTGCATCAGTAT+AGG - Chr7:83417000-83417019 None:intergenic 35.0%
!! ATGGAGAAAGTGGTCATTTT+AGG + Chr7:83413941-83413960 MsG0780040855.01.T01:intron 35.0%
!! GATTTTAGAAGCGAAATACC+AGG - Chr7:83413120-83413139 None:intergenic 35.0%
!!! TTGGGTGCTTTTAATTTGCA+GGG + Chr7:83417075-83417094 MsG0780040855.01.T01:intron 35.0%
!!! TTTGGGTGCTTTTAATTTGC+AGG + Chr7:83417074-83417093 MsG0780040855.01.T01:intron 35.0%
AATAGACCTGCGTAATCCAA+TGG + Chr7:83413398-83413417 MsG0780040855.01.T01:intron 40.0%
ACTTTATACACCACCACACT+TGG - Chr7:83415517-83415536 None:intergenic 40.0%
AGGTGGAACTTCTAACTTAC+TGG - Chr7:83414129-83414148 None:intergenic 40.0%
ATGTGATTAACCAAGTGTGG+TGG + Chr7:83415504-83415523 MsG0780040855.01.T01:intron 40.0%
CAAAAGCAACTGGAATAGAG+GGG + Chr7:83415698-83415717 MsG0780040855.01.T01:CDS 40.0%
CACATTTGTCAACAGGAAGA+GGG + Chr7:83416164-83416183 MsG0780040855.01.T01:intron 40.0%
CAGTTACACCTTTCAAGCTT+GGG - Chr7:83417131-83417150 None:intergenic 40.0%
CCATAACTAGTCCACTAGTT+AGG - Chr7:83416120-83416139 None:intergenic 40.0%
CCATCACCGTTTCAAATCTT+CGG + Chr7:83412964-83412983 MsG0780040855.01.T01:five_prime_UTR 40.0%
GAGATAGAAGGTAAGTTTGG+TGG - Chr7:83416551-83416570 None:intergenic 40.0%
GCAAAAGCAACTGGAATAGA+GGG + Chr7:83415697-83415716 MsG0780040855.01.T01:CDS 40.0%
GGTGGAACTTCTAACTTACT+GGG - Chr7:83414128-83414147 None:intergenic 40.0%
GTCCTATTCAAGTAGCACTT+GGG + Chr7:83413813-83413832 MsG0780040855.01.T01:intron 40.0%
TATTCTAGCAAGAAGGCCTA+TGG + Chr7:83415907-83415926 MsG0780040855.01.T01:CDS 40.0%
TCACATTTGTCAACAGGAAG+AGG + Chr7:83416163-83416182 MsG0780040855.01.T01:intron 40.0%
TCATGTGAGCTTAACTCAGT+TGG + Chr7:83414825-83414844 MsG0780040855.01.T01:intron 40.0%
TGAAGTTGTCCACGAATGAT+CGG - Chr7:83414560-83414579 None:intergenic 40.0%
TGAGGTTAAAGTTAACAGCG+CGG + Chr7:83413515-83413534 MsG0780040855.01.T01:intron 40.0%
TGCAAAAGCAACTGGAATAG+AGG + Chr7:83415696-83415715 MsG0780040855.01.T01:CDS 40.0%
TGGTCCACCATAGATATTTG+AGG + Chr7:83413497-83413516 MsG0780040855.01.T01:intron 40.0%
TGTCCTATTCAAGTAGCACT+TGG + Chr7:83413812-83413831 MsG0780040855.01.T01:intron 40.0%
TTCCATCCACAACAAGATAC+CGG - Chr7:83416517-83416536 None:intergenic 40.0%
! ACACGTGTGTTATTGTGATG+TGG + Chr7:83417397-83417416 MsG0780040855.01.T01:three_prime_UTR 40.0%
! CAAGCTTGAAAGGTGTAACT+GGG + Chr7:83417130-83417149 MsG0780040855.01.T01:CDS 40.0%
! TCACTGTCTAAAATGCTCAC+CGG + Chr7:83416495-83416514 MsG0780040855.01.T01:intron 40.0%
! TCATTCGTATGGTTGTTTCC+TGG + Chr7:83413099-83413118 MsG0780040855.01.T01:five_prime_UTR 40.0%
! TGGTGGACCAACATTAAAAG+TGG - Chr7:83413487-83413506 None:intergenic 40.0%
! TTTTGCTCCGTCAGTCAATA+TGG - Chr7:83413543-83413562 None:intergenic 40.0%
!! AAGGTCAAAGAAGCACTAGT+TGG - Chr7:83415993-83416012 None:intergenic 40.0%
!! AGGTCAAAGAAGCACTAGTT+GGG - Chr7:83415992-83416011 None:intergenic 40.0%
!! ATTGACCACACTTTGCTGTT+TGG + Chr7:83417269-83417288 MsG0780040855.01.T01:exon 40.0%
!! CCTAACTAGTGGACTAGTTA+TGG + Chr7:83416117-83416136 MsG0780040855.01.T01:intron 40.0%
!! TGGTGGACCACTTTTAATGT+TGG + Chr7:83413477-83413496 MsG0780040855.01.T01:intron 40.0%
!! TGTAACTGGGAAGTACTTTG+TGG + Chr7:83417143-83417162 MsG0780040855.01.T01:CDS 40.0%
!! TTGAAACGGTGATGGAAGAT+AGG - Chr7:83412959-83412978 None:intergenic 40.0%
AAAGTCTGTCCGATCATTCG+TGG + Chr7:83414548-83414567 MsG0780040855.01.T01:intron 45.0%
AGAGGAGTCATTATCACTCC+TGG - Chr7:83416218-83416237 None:intergenic 45.0%
AGGAAACAAATGTGCACGAG+TGG + Chr7:83414497-83414516 MsG0780040855.01.T01:intron 45.0%
ATTAATGCAGGAGGAGCAAG+TGG + Chr7:83414371-83414390 MsG0780040855.01.T01:intron 45.0%
CATATGGAAGAACGTTCCAC+AGG + Chr7:83416944-83416963 MsG0780040855.01.T01:intron 45.0%
CCAGTTACACCTTTCAAGCT+TGG - Chr7:83417132-83417151 None:intergenic 45.0%
GACTGACGGAGCAAAACAAA+GGG + Chr7:83413547-83413566 MsG0780040855.01.T01:intron 45.0%
GAGGAGTCATTATCACTCCT+GGG - Chr7:83416217-83416236 None:intergenic 45.0%
GAGGTTAAAGTTAACAGCGC+GGG + Chr7:83413516-83413535 MsG0780040855.01.T01:intron 45.0%
GAGTGCAACATAACATGTCG+TGG - Chr7:83417106-83417125 None:intergenic 45.0%
GGACAGACTTTGTTGAGCAT+AGG - Chr7:83414539-83414558 None:intergenic 45.0%
GGTGTGTCACATTTGTCAAC+AGG + Chr7:83416157-83416176 MsG0780040855.01.T01:intron 45.0%
GGTTAAGCTAAATCCACCAC+CGG - Chr7:83413075-83413094 None:intergenic 45.0%
GTGAACCAAACAGCAAAGTG+TGG - Chr7:83417277-83417296 None:intergenic 45.0%
TGACTGACGGAGCAAAACAA+AGG + Chr7:83413546-83413565 MsG0780040855.01.T01:intron 45.0%
TTACACCTTTCAAGCTTGGG+TGG - Chr7:83417128-83417147 None:intergenic 45.0%
! CCAAGCTTGAAAGGTGTAAC+TGG + Chr7:83417129-83417148 MsG0780040855.01.T01:CDS 45.0%
! CCGAAGATTTGAAACGGTGA+TGG - Chr7:83412967-83412986 None:intergenic 45.0%
! GTTGGAGACAACAAGAGTGT+TGG + Chr7:83414400-83414419 MsG0780040855.01.T01:intron 45.0%
!! AAGAGTGTTGGCTCTTAGGA+AGG + Chr7:83414412-83414431 MsG0780040855.01.T01:intron 45.0%
!! CAACAAGAGTGTTGGCTCTT+AGG + Chr7:83414408-83414427 MsG0780040855.01.T01:intron 45.0%
!! CACCCAAGTGCTACTTGAAT+AGG - Chr7:83413818-83413837 None:intergenic 45.0%
AAAGGCAGACCAAACCGAAG+CGG + Chr7:83413777-83413796 MsG0780040855.01.T01:intron 50.0%
AAGCAACTGGAATAGAGGGG+AGG + Chr7:83415701-83415720 MsG0780040855.01.T01:CDS 50.0%
AGAGGACCATTGGATTACGC+AGG - Chr7:83413407-83413426 None:intergenic 50.0%
AGGAGCAAGTGGTATAGGGT+TGG + Chr7:83414382-83414401 MsG0780040855.01.T01:intron 50.0%
CACTTGGGTGACATTGTGGT+TGG + Chr7:83413828-83413847 MsG0780040855.01.T01:intron 50.0%
CAGGAGGAGCAAGTGGTATA+GGG + Chr7:83414378-83414397 MsG0780040855.01.T01:intron 50.0%
CATGTGTGCATTCTCCGCTT+CGG - Chr7:83413794-83413813 None:intergenic 50.0%
CCCTTCAAACTCTCAGAGGA+GGG + Chr7:83415240-83415259 MsG0780040855.01.T01:CDS 50.0%
CTCTCATGAGTCCCAACACT+TGG + Chr7:83414301-83414320 MsG0780040855.01.T01:intron 50.0%
GAGTCATTATCACTCCTGGG+TGG - Chr7:83416214-83416233 None:intergenic 50.0%
GGCTAACTTGGACTGTCCAT+AGG - Chr7:83415926-83415945 None:intergenic 50.0%
GTAGCACTTGGGTGACATTG+TGG + Chr7:83413824-83413843 MsG0780040855.01.T01:intron 50.0%
TGCTCACCGGTATCTTGTTG+TGG + Chr7:83416508-83416527 MsG0780040855.01.T01:intron 50.0%
! CACCGGTATCTTGTTGTGGA+TGG + Chr7:83416512-83416531 MsG0780040855.01.T01:intron 50.0%
! CCCTCCTCTGAGAGTTTGAA+GGG - Chr7:83415243-83415262 None:intergenic 50.0%
! CCTCCTCTGAGAGTTTGAAG+GGG - Chr7:83415242-83415261 None:intergenic 50.0%
! TCCCTCCTCTGAGAGTTTGA+AGG - Chr7:83415244-83415263 None:intergenic 50.0%
!! GACATTGTGGTTGGTGACAC+TGG + Chr7:83413837-83413856 MsG0780040855.01.T01:intron 50.0%
!! GTTGGTGACACTGGTGACAT+TGG + Chr7:83413846-83413865 MsG0780040855.01.T01:intron 50.0%
CAAGGAAGACAACAAGCCGG+TGG + Chr7:83413056-83413075 MsG0780040855.01.T01:five_prime_UTR 55.0%
CCAACGGCAGTAGTTGAAGG+CGG + Chr7:83413014-83413033 MsG0780040855.01.T01:five_prime_UTR 55.0%
CCCCTTCAAACTCTCAGAGG+AGG + Chr7:83415239-83415258 MsG0780040855.01.T01:CDS 55.0%
CCGCAAGGAAGACAACAAGC+CGG + Chr7:83413053-83413072 MsG0780040855.01.T01:five_prime_UTR 55.0%
CCTTCAACTACTGCCGTTGG+CGG - Chr7:83413014-83413033 None:intergenic 55.0%
CTGCCCCTTCAAACTCTCAG+AGG + Chr7:83415236-83415255 MsG0780040855.01.T01:CDS 55.0%
GCACTAGTTGGGTTACCTGC+AGG - Chr7:83415981-83416000 None:intergenic 55.0%
GCACTCCACCCAAGCTTGAA+AGG + Chr7:83417120-83417139 MsG0780040855.01.T01:CDS 55.0%
GCAGGAGGAGCAAGTGGTAT+AGG + Chr7:83414377-83414396 MsG0780040855.01.T01:intron 55.0%
GTGCATTCTCCGCTTCGGTT+TGG - Chr7:83413789-83413808 None:intergenic 55.0%
! CGCGGGACCATATTGACTGA+CGG + Chr7:83413533-83413552 MsG0780040855.01.T01:intron 55.0%
!! CCGGCTTGTTGTCTTCCTTG+CGG - Chr7:83413056-83413075 None:intergenic 55.0%
ACAGCCAACTCTGTCCACCC+AGG + Chr7:83416197-83416216 MsG0780040855.01.T01:intron 60.0%
CACTCCTGGGTGGACAGAGT+TGG - Chr7:83416204-83416223 None:intergenic 60.0%
CCGCCAACGGCAGTAGTTGA+AGG + Chr7:83413011-83413030 MsG0780040855.01.T01:five_prime_UTR 60.0%
CCGCCTTCAACTACTGCCGT+TGG - Chr7:83413017-83413036 None:intergenic 60.0%
GGAAGACAACAAGCCGGTGG+TGG + Chr7:83413059-83413078 MsG0780040855.01.T01:five_prime_UTR 60.0%
TGAACTCTCTCGTCGCCTGC+AGG + Chr7:83415963-83415982 MsG0780040855.01.T01:CDS 60.0%
CGATTCCATGGCGCCGCCAA+CGG + Chr7:83412998-83413017 MsG0780040855.01.T01:five_prime_UTR 65.0%
GACGCTGATGCAGCACCGCA+AGG + Chr7:83413038-83413057 MsG0780040855.01.T01:five_prime_UTR 65.0%
TACTGCCGTTGGCGGCGCCA+TGG - Chr7:83413006-83413025 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr7 gene 83412942 83417463 83412942 ID=MsG0780040855.01;Name=MsG0780040855.01
Chr7 mRNA 83412942 83417463 83412942 ID=MsG0780040855.01.T01;Parent=MsG0780040855.01;Name=MsG0780040855.01.T01;_AED=0.49;_eAED=0.60;_QI=195|0.5|0.8|1|1|1|5|194|157
Chr7 exon 83412942 83413120 83412942 ID=MsG0780040855.01.T01:exon:20224;Parent=MsG0780040855.01.T01
Chr7 exon 83415215 83415294 83415215 ID=MsG0780040855.01.T01:exon:20225;Parent=MsG0780040855.01.T01
Chr7 exon 83415650 83415806 83415650 ID=MsG0780040855.01.T01:exon:20226;Parent=MsG0780040855.01.T01
Chr7 exon 83415906 83415984 83415906 ID=MsG0780040855.01.T01:exon:20227;Parent=MsG0780040855.01.T01
Chr7 exon 83417096 83417463 83417096 ID=MsG0780040855.01.T01:exon:20228;Parent=MsG0780040855.01.T01
Chr7 five_prime_UTR 83412942 83413120 83412942 ID=MsG0780040855.01.T01:five_prime_utr;Parent=MsG0780040855.01.T01
Chr7 five_prime_UTR 83415215 83415230 83415215 ID=MsG0780040855.01.T01:five_prime_utr;Parent=MsG0780040855.01.T01
Chr7 CDS 83415231 83415294 83415231 ID=MsG0780040855.01.T01:cds;Parent=MsG0780040855.01.T01
Chr7 CDS 83415650 83415806 83415650 ID=MsG0780040855.01.T01:cds;Parent=MsG0780040855.01.T01
Chr7 CDS 83415906 83415984 83415906 ID=MsG0780040855.01.T01:cds;Parent=MsG0780040855.01.T01
Chr7 CDS 83417096 83417269 83417096 ID=MsG0780040855.01.T01:cds;Parent=MsG0780040855.01.T01
Chr7 three_prime_UTR 83417270 83417463 83417270 ID=MsG0780040855.01.T01:three_prime_utr;Parent=MsG0780040855.01.T01
Gene Sequence

>MsG0780040855.01.T01

ATGTTCTGCCCCTTCAAACTCTCAGAGGAGGGAATTGAGATGCAATTTGCAACAAACCATCTTGGCCATTTCCTCTTGACAAATCTTCTTCTTGACAAAATGAAACAAACTGCAAAAGCAACTGGAATAGAGGGGAGGATCATAAATCTATCATCAATTGCTCATAGATACACTTACTTTAGAAAGGGAATTAGATTTGAGAAGATCAATGATAAAAAAGGTTATTCTAGCAAGAAGGCCTATGGACAGTCCAAGTTAGCCAACATATTACATGCAAATGAACTCTCTCGTCGCCTGCAGGGAGCTGCCACGACATGTTATGTTGCACTCCACCCAAGCTTGAAAGGTGTAACTGGGAAGTACTTTGTGGATTGCAATGAATTCAAGCCAAGTGCATATGCAAAAAATAAACAGTTAGCAAAGAAACTTTGGGATTTCAGCAACAAATTGATCAATTCAATTTCAAAAGCTTGA
Protein sequence

>MsG0780040855.01.T01

MFCPFKLSEEGIEMQFATNHLGHFLLTNLLLDKMKQTAKATGIEGRIINLSSIAHRYTYFRKGIRFEKINDKKGYSSKKAYGQSKLANILHANELSRRLQGAATTCYVALHPSLKGVTGKYFVDCNEFKPSAYAKNKQLAKKLWDFSNKLINSISKA*