AlfalfaGEDB | MsG0780041212.01

M. sativa cultivar ZhongmuNo.1 / MsG0780041212.01

KEGG: K13412
GO: GO:0004672 GO:0005509 GO:0005524 GO:0006468
PFAM: PF00069 PF06886 PF13499 PF13833

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041212.01.T01	XP_013450249.1	94.884	606	22	3	1	602	1	601	0	1201

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041212.01.T01	Q06850	61.72	593	206	5	1	575	1	590	0	745

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041212.01.T01	A0A072U3H0	94.884	606	22	3	1	602	1	601	0.0	1201

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048700.01	MsG0780041212.01	0.825929	3.586005e-54	3.314735e-51
MsG0180000001.01	MsG0780041212.01	0.802621	5.142311e-49	2.530739e-46
MsG0180004989.01	MsG0780041212.01	0.832019	1.200417e-55	1.325270e-52
MsG0180005504.01	MsG0780041212.01	0.833522	5.080379e-56	5.865683e-53
MsG0180006235.01	MsG0780041212.01	0.806640	7.458324e-50	4.068834e-47
MsG0280007790.01	MsG0780041212.01	0.814418	1.556146e-51	1.043652e-48
MsG0280011336.01	MsG0780041212.01	0.804918	1.715241e-49	8.954807e-47
MsG0380015713.01	MsG0780041212.01	0.803968	2.705698e-49	1.378373e-46
MsG0380017049.01	MsG0780041212.01	0.800279	1.552673e-48	7.200719e-46
MsG0380017240.01	MsG0780041212.01	0.812632	3.844433e-51	2.456966e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0780041212.01.T01	MTR_7g106710	94.884	606	22	3	1	602	1	601	1201
MsG0780041212.01.T01	MTR_7g106710	95.196	562	19	2	1	558	1	558	1122
MsG0780041212.01.T01	MTR_7g106710	92.757	497	28	2	1	493	1	493	964
MsG0780041212.01.T01	MTR_7g106710	94.444	432	16	2	1	428	1	428	860
MsG0780041212.01.T01	MTR_1g055255	65.268	596	188	6	1	592	1	581	782
MsG0780041212.01.T01	MTR_7g106750	92.162	421	33	0	626	1046	1	421	769
MsG0780041212.01.T01	MTR_1g041150	62.988	589	191	5	1	581	1	570	749
MsG0780041212.01.T01	MTR_1g054865	57.500	600	225	4	1	572	1	598	693
MsG0780041212.01.T01	MTR_3g098070	65.895	475	146	1	131	605	25	483	663
MsG0780041212.01.T01	MTR_1g096490	65.263	475	163	1	119	591	14	488	662

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0780041212.01.T01	AT5G04870	61.720	593	206	5	1	575	1	590	745
MsG0780041212.01.T01	AT3G10660	66.543	538	170	3	38	575	99	626	745
MsG0780041212.01.T01	AT3G10660	66.543	538	170	3	38	575	99	626	745
MsG0780041212.01.T01	AT2G38910	58.478	578	227	5	1	572	1	571	684
MsG0780041212.01.T01	AT4G35310	67.489	446	145	0	131	576	93	538	656
MsG0780041212.01.T01	AT4G35310	67.489	446	145	0	131	576	93	538	656
MsG0780041212.01.T01	AT4G38230	64.092	479	162	1	115	583	34	512	655
MsG0780041212.01.T01	AT4G38230	64.092	479	162	1	115	583	4	482	655
MsG0780041212.01.T01	AT4G38230	64.092	479	162	1	115	583	4	482	655
MsG0780041212.01.T01	AT2G17290	65.727	461	156	1	131	591	81	539	652

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Find 171 sgRNAs with CRISPR-Local

Find 633 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAGATGCAAACATTTG+TGG	0.413600	7:+88301532	MsG0780041212.01.T01:CDS
AAAGAGAAATCCAATTTGAA+GGG	0.537239	7:+88301973	MsG0780041212.01.T01:CDS
AAATAAGAAATGAATTATAA+AGG	0.318450	7:-88304711	None:intergenic
AAATAATGCATCACCTGCTT+GGG	0.406895	7:+88293931	MsG0780041212.01.T01:CDS
AAATGAGAATGCAGCATCTC+AGG	0.427168	7:+88301567	MsG0780041212.01.T01:CDS
AACAATGGCATGATTGACTA+TGG	0.402548	7:+88296217	MsG0780041212.01.T01:CDS
AACACTAGCTTTAACATTGG+TGG	0.449973	7:+88296814	MsG0780041212.01.T01:CDS
AACATGGGAAACAATTGTGT+TGG	0.533476	7:+88293375	None:intergenic
AACGATTGTCAATGTTGTTG+AGG	0.535017	7:+88294100	MsG0780041212.01.T01:CDS
AACTGCAAAAGCAAGTAAAG+AGG	0.533723	7:+88302935	MsG0780041212.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTAGACTCGTTTCTTG+AGG	-	Chr7:88296548-88296567	None:intergenic	30.0%
AAAGAAGATGCAAACATTTG+TGG	+	Chr7:88301532-88301551	MsG0780041212.01.T01:CDS	30.0%
AAGAACACTGTTTAAGAACA+TGG	-	Chr7:88299676-88299695	None:intergenic	30.0%
AAGATGCATGAGATTTGAAA+AGG	-	Chr7:88296676-88296695	None:intergenic	30.0%
AAGTATTAGGAGCAACAATA+GGG	+	Chr7:88297390-88297409	MsG0780041212.01.T01:intron	30.0%
AATCAAGAAAATCCAAGTCA+AGG	+	Chr7:88304347-88304366	MsG0780041212.01.T01:CDS	30.0%
AATTGTTTACATGAGGATGT+TGG	-	Chr7:88304416-88304435	None:intergenic	30.0%
AATTTCAGATTCAGTGAGAA+TGG	-	Chr7:88296058-88296077	None:intergenic	30.0%
ACAAGAAATAATCACTCTCT+TGG	-	Chr7:88299783-88299802	None:intergenic	30.0%
ACATAGTGAGAGAAAAAGAT+AGG	-	Chr7:88300172-88300191	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	88293378	88304731	88293378	ID=MsG0780041212.01;Name=MsG0780041212.01
Chr7	mRNA	88293378	88304731	88293378	ID=MsG0780041212.01.T01;Parent=MsG0780041212.01;Name=MsG0780041212.01.T01;_AED=0.21;_eAED=0.23;_QI=0\|0.5\|0.46\|1\|1\|1\|15\|186\|1046
Chr7	exon	88293378	88294245	88293378	ID=MsG0780041212.01.T01:exon:52284;Parent=MsG0780041212.01.T01
Chr7	exon	88295033	88295176	88295033	ID=MsG0780041212.01.T01:exon:52285;Parent=MsG0780041212.01.T01
Chr7	exon	88295275	88295427	88295275	ID=MsG0780041212.01.T01:exon:52286;Parent=MsG0780041212.01.T01
Chr7	exon	88295631	88295746	88295631	ID=MsG0780041212.01.T01:exon:52287;Parent=MsG0780041212.01.T01
Chr7	exon	88295928	88296095	88295928	ID=MsG0780041212.01.T01:exon:52288;Parent=MsG0780041212.01.T01
Chr7	exon	88296205	88296429	88296205	ID=MsG0780041212.01.T01:exon:52289;Parent=MsG0780041212.01.T01
Chr7	exon	88296733	88296865	88296733	ID=MsG0780041212.01.T01:exon:52290;Parent=MsG0780041212.01.T01
Chr7	exon	88301389	88301660	88301389	ID=MsG0780041212.01.T01:exon:52291;Parent=MsG0780041212.01.T01
Chr7	exon	88301925	88302260	88301925	ID=MsG0780041212.01.T01:exon:52292;Parent=MsG0780041212.01.T01
Chr7	exon	88302363	88302421	88302363	ID=MsG0780041212.01.T01:exon:52293;Parent=MsG0780041212.01.T01
Chr7	exon	88302905	88302982	88302905	ID=MsG0780041212.01.T01:exon:52294;Parent=MsG0780041212.01.T01
Chr7	exon	88303089	88303167	88303089	ID=MsG0780041212.01.T01:exon:52295;Parent=MsG0780041212.01.T01
Chr7	exon	88303250	88303321	88303250	ID=MsG0780041212.01.T01:exon:52296;Parent=MsG0780041212.01.T01
Chr7	exon	88303534	88303641	88303534	ID=MsG0780041212.01.T01:exon:52297;Parent=MsG0780041212.01.T01
Chr7	exon	88304216	88304731	88304216	ID=MsG0780041212.01.T01:exon:52298;Parent=MsG0780041212.01.T01
Chr7	CDS	88293378	88294245	88293378	ID=MsG0780041212.01.T01:cds;Parent=MsG0780041212.01.T01
Chr7	CDS	88295033	88295176	88295033	ID=MsG0780041212.01.T01:cds;Parent=MsG0780041212.01.T01
Chr7	CDS	88295275	88295427	88295275	ID=MsG0780041212.01.T01:cds;Parent=MsG0780041212.01.T01
Chr7	CDS	88295631	88295746	88295631	ID=MsG0780041212.01.T01:cds;Parent=MsG0780041212.01.T01
Chr7	CDS	88295928	88296095	88295928	ID=MsG0780041212.01.T01:cds;Parent=MsG0780041212.01.T01
Chr7	CDS	88296205	88296429	88296205	ID=MsG0780041212.01.T01:cds;Parent=MsG0780041212.01.T01
Chr7	CDS	88296733	88296865	88296733	ID=MsG0780041212.01.T01:cds;Parent=MsG0780041212.01.T01
Chr7	CDS	88301389	88301660	88301389	ID=MsG0780041212.01.T01:cds;Parent=MsG0780041212.01.T01
Chr7	CDS	88301925	88302260	88301925	ID=MsG0780041212.01.T01:cds;Parent=MsG0780041212.01.T01
Chr7	CDS	88302363	88302421	88302363	ID=MsG0780041212.01.T01:cds;Parent=MsG0780041212.01.T01
Chr7	CDS	88302905	88302982	88302905	ID=MsG0780041212.01.T01:cds;Parent=MsG0780041212.01.T01
Chr7	CDS	88303089	88303167	88303089	ID=MsG0780041212.01.T01:cds;Parent=MsG0780041212.01.T01
Chr7	CDS	88303250	88303321	88303250	ID=MsG0780041212.01.T01:cds;Parent=MsG0780041212.01.T01
Chr7	CDS	88303534	88303641	88303534	ID=MsG0780041212.01.T01:cds;Parent=MsG0780041212.01.T01
Chr7	CDS	88304216	88304545	88304216	ID=MsG0780041212.01.T01:cds;Parent=MsG0780041212.01.T01
Chr7	three_prime_UTR	88304546	88304731	88304546	ID=MsG0780041212.01.T01:three_prime_utr;Parent=MsG0780041212.01.T01

Gene Sequence

>MsG0780041212.01.T01

ATGGGAAACAATTGTGTTGGACCTAGAAGAACCTATGAACATGAAAGTTTTCAAGCTTCATTTTGGTGGCCATGGTCATATCCAATCAACCAAACACAAATTTCAGTTTCTCAAAACACAAATTCTTCACAAACCAATCAACAAAACCCACCACATGTTCACAAAATTGAGAACAAAGACGTTAAGCCACTTCAGTCTAATACTGCTTCAGACAAACAAACTAGCACATCACAAGAAGATGCAGAACCAGTTACGCAGTTGAAGGAAAAAGATACACCAACAAAATCCGCTGCAAAAACAATGATGTTGAAAAATATTAATATTAGGAGGGTAACACCAAAAAGTGCAGGTCTTCGAGCAGAATCGGTTTTGTTGACAAACAATGGTCCTTTTAGGGAATTTTATAAGTTAGGAGATGAACTTGGGAAAGGAAAGTTTGGAACTACTTCACTTTGTTTGGAGAAATCAACCGGGAAGACATACGCATGCAAAGCAATCCCAAAAGTAAAATTGTTTAGAGAGAATGATATAGAGGATGTGAGGAGGGAGATTGAAATAATGCATCACCTGCTTGGGATTCCGAGTGTGATATCAATAAAAGGAGCTTATGAAGATCCCGTTGTTGTTTATATTGTCATGGAATTATGCGAAGGAGGTGAGTTGTTCGATAGGATTGTGGAAAGGAGACATTACACCGAGAGAAAGGCTGCTAAACTAGCAAGAACGATTGTCAATGTTGTTGAGGCTTGCCACTCACGTGGAGTTATGCATCGTGATCTTAAGCCTGAAAATTTCCTATTTGTTGATGGAGATGAAGATTCAACTCTTAAGGCAATTGATTTTGGACTGTCCATTTTCTTCAAACCAGGGGAAAAATTTAGTGATTTTGTCGGAAGTGCTTATTATGTTGCACCTGAAGTTATAGGAGAGTGTTATGGGCCAGAAGCTGATGTGTGGAGTGCAGGTGTGATCATATACATTCTCTTATGTGGAACACCTCCCTTTTATGGTGAATTGGATCAAGAGATATTTGATGAGGTTTTACATGGTGAAGTTGATTTCTGTTCCGATCCTTGGCCAAGTATATCTGAAAGTGCCAAAGACTTGGTTAAGAAGATGCTTGATAGAGATCCTAAAACACGAATTACTGCACATGAAGTTCTAAGTCACCCTTGGATTCAGGTTGATGGAGTTGCTCCAGACATGCCTCTTGATTCTGCAACTTTGAGTCGTCTAAAGCAATTTTCTGCTATGAACAAGCTCAAGAAAATGGCTCTTAGAGTTATTGCAAAAAATCTTTCTGAAGAAGAAATTTCTGGGTTGAAAGAATCGTTTAAGATGATAGATACAGACAATACTGGTCAAATTACTTTCGAAAAACTCAAGGTTGGACTGAAAAAGTTTGGCGCCATTCTCACTGAATCTGAAATTTTTGATCTAATGCAAGCTGCAGATATTGATAACAATGGCATGATTGACTATGGAGAATTCATAGCTGCAACATTGCATTTAAACAAAGTTGACAAGGAAGATCATTTAGTTGCAGCTTTCTCATATTTTGATAAAGATGGAAATGGATACATCACTCAAGACGAGCTTCAACAAGTTTGTAAAGAGTTTGGCATGAAGGATGTCCATTTTGAGGAAATGATCCGAGAAGCTGATCAAAATAATGATGGACAAATAGACTACAATGAATTTGTGGCTATGATGCAGAGAGGCAATGCAGATTTAGAAAATAATGGTGTGAAGTGTAACACTAGCTTTAACATTGGTGGATTAGGGAAGACAAAGATACTGTCAATATTGAATTATGTGTTTATAAAACTTAGATCAAGTGAATCTTATTTATGTTTGTATATTGTTTATAGCAAAATGGAATCTGAAAATGAGGTTGCTTTGGAGGAAGAGAAACGTGTTATTGAGGTGATAGCTGAGGAGAATATAAACAAAGAAGATGCAAACATTTGTGGTGCAGAAATTCAAAATGAGAATGCAGCATCTCAGGTTGAAATTAGCCACATTTCTACTAGTGACACTGTTGAAGTTGATGCCTCTAAAAATTCAAAACTTGCTAAGGGAACAAAGAATAGAGAAAATGTTGCTTCCAAGAACAACAAATTTGTTAAAGAGAAATCCAATTTGAAGGGCACAACTTCAATATCTAGAAAACAAAGGTCAACCCTTTCTCAGAGCTTTTCTTTCCCAGCCAAATCAGCACGTGAAGATTCTATGCATAAAAGCATTGATGGTTGTCTTGTTAACACAAAAGTTAAACATGTTCGAGCTTCCACTCTTCATCATTCAAGCAAGTCCACAAACTCTGAAGGGAAATCAAATGAGGCGAAAACAAACGCTGAAGGTTGTAATAAGAGGAGTACTTTGATATCCTTGCCTGGTTTGAAACACGCTGTGTTTGGAAGGTCTACTTCAGCTGTTGGAGTCACCAAGAGCTGCACATCTGAGGCATCATTACATGTTGGTCAGATATCAAACTCATCAAAAACTGCAAAAGCAAGTAAAGAGGATGATGATTCTCACTCCACAACTTCAAGTGCTACTCTTCGTCAGAGAAACGTATGTTCTGGATTTTCATCCAGATTGGAAGAAAGAGCTGAAAAGAGGAAGGAGTTTTTCTCAAAGGTGGAGGAAAAAGTTCTAGCCAAGGAAGCAGAAAAAACCAACCAACAAGCCAAATCAAAGGAAACCCAAGAGAAGGAGATCAAGCAATTGAGGAAGAGCTTGACTTTCAGAGCCGCTCCAATGCCAAGTTTCTATAAGGAACCACCTCCAAAAGTTGAGCTAAAGAAGATACCAACAACCCGCCCAAGATCTCCAAAGCTTGGAAGGCACATAGAATCTGCTATGAACAACAATTCTGAAGAAAATTTAACCAAGTCAAAAATCATAAAAGGTCATAAAGATGTGATTTCAAAGAAACCAATCAAGAAAATCCAAGTCAAGGTGAAGTGTCAAGAAAATGCAACCAAAGGAAGCAATGAAGAATTCCAACATCCTCATGTAAACAATTCGGACATGGAGCAACAATCAGAGACAGATCATGCTGCAAATGATCATGCACCTCCTTTTAGTTCTACAACACTTGAGCTTGCATCATGTGAGGTTACTGTTGGAGTTTAG

Protein sequence

>MsG0780041212.01.T01

MGNNCVGPRRTYEHESFQASFWWPWSYPINQTQISVSQNTNSSQTNQQNPPHVHKIENKDVKPLQSNTASDKQTSTSQEDAEPVTQLKEKDTPTKSAAKTMMLKNINIRRVTPKSAGLRAESVLLTNNGPFREFYKLGDELGKGKFGTTSLCLEKSTGKTYACKAIPKVKLFRENDIEDVRREIEIMHHLLGIPSVISIKGAYEDPVVVYIVMELCEGGELFDRIVERRHYTERKAAKLARTIVNVVEACHSRGVMHRDLKPENFLFVDGDEDSTLKAIDFGLSIFFKPGEKFSDFVGSAYYVAPEVIGECYGPEADVWSAGVIIYILLCGTPPFYGELDQEIFDEVLHGEVDFCSDPWPSISESAKDLVKKMLDRDPKTRITAHEVLSHPWIQVDGVAPDMPLDSATLSRLKQFSAMNKLKKMALRVIAKNLSEEEISGLKESFKMIDTDNTGQITFEKLKVGLKKFGAILTESEIFDLMQAADIDNNGMIDYGEFIAATLHLNKVDKEDHLVAAFSYFDKDGNGYITQDELQQVCKEFGMKDVHFEEMIREADQNNDGQIDYNEFVAMMQRGNADLENNGVKCNTSFNIGGLGKTKILSILNYVFIKLRSSESYLCLYIVYSKMESENEVALEEEKRVIEVIAEENINKEDANICGAEIQNENAASQVEISHISTSDTVEVDASKNSKLAKGTKNRENVASKNNKFVKEKSNLKGTTSISRKQRSTLSQSFSFPAKSAREDSMHKSIDGCLVNTKVKHVRASTLHHSSKSTNSEGKSNEAKTNAEGCNKRSTLISLPGLKHAVFGRSTSAVGVTKSCTSEASLHVGQISNSSKTAKASKEDDDSHSTTSSATLRQRNVCSGFSSRLEERAEKRKEFFSKVEEKVLAKEAEKTNQQAKSKETQEKEIKQLRKSLTFRAAPMPSFYKEPPPKVELKKIPTTRPRSPKLGRHIESAMNNNSEENLTKSKIIKGHKDVISKKPIKKIQVKVKCQENATKGSNEEFQHPHVNNSDMEQQSETDHAANDHAPPFSSTTLELASCEVTVGV*