AlfalfaGEDB | MsG0480023450.01

M. sativa cultivar ZhongmuNo.1 / MsG0480023450.01

KEGG: -
GO: GO:0005515
PFAM: PF13176 PF13181 PF13516

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023450.01.T01	XP_012572250.1	69.647	1331	198	15	1	1147	1	1309	0	1728

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023450.01.T01	Q6Q4D0	38.599	1342	565	28	16	1146	17	1310	0	776

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023450.01.T01	A0A1S3E8V5	69.647	1331	198	15	1	1147	1	1309	0.0	1728

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048150.01	MsG0480023450.01	0.810937	8.990166e-51	5.492342e-48
MsG0080048701.01	MsG0480023450.01	0.808496	3.010359e-50	1.723870e-47
MsG0080048829.01	MsG0480023450.01	0.809761	1.612804e-50	9.551413e-48
MsG0080048842.01	MsG0480023450.01	-0.804269	2.342679e-49	1.202615e-46
MsG0180000076.01	MsG0480023450.01	0.851229	1.016772e-60	2.044163e-57
MsG0180000300.01	MsG0480023450.01	0.819965	8.801392e-53	6.873569e-50
MsG0180000353.01	MsG0480023450.01	0.806920	6.507367e-50	3.576020e-47
MsG0180000360.01	MsG0480023450.01	0.853149	2.891726e-61	6.187348e-58
MsG0180000373.01	MsG0480023450.01	0.846536	2.041854e-59	3.525705e-56
MsG0180001272.01	MsG0480023450.01	0.810959	8.894310e-51	5.436980e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023450.01.T01	MTR_8g093100	84.341	926	36	6	311	1147	414	1319	0.0	1489
MsG0480023450.01.T01	MTR_8g093100	81.639	305	7	1	1	256	1	305	5.65e-153	492

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480023450.01.T01	AT3G18730	38.599	1342	565	28	16	1146	17	1310	0.0	776

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Find 198 sgRNAs with CRISPR-Local

Find 769 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGCTCGAGTCCAAATAC+AGG	0.557390	4:+85255057	MsG0480023450.01.T01:CDS
AAATACTTTAGACGATCAGC+TGG	0.535628	4:+85260920	MsG0480023450.01.T01:CDS
AAATGCGATACAGATGTCTC+TGG	0.536190	4:+85255153	MsG0480023450.01.T01:CDS
AAATGTCAACTTGGGCTTGC+TGG	0.292500	4:+85260623	MsG0480023450.01.T01:CDS
AACCGTCTTACTGATGCATG+TGG	0.676038	4:+85258187	MsG0480023450.01.T01:CDS
AACGAAGACTTATTATTTGG+CGG	0.444910	4:-85250946	None:intergenic
AACGAGTGCCTCCGTCGCTG+GGG	0.630887	4:+85252087	MsG0480023450.01.T01:CDS
AACGTACTTGTATCATAATT+AGG	0.390793	4:-85254778	None:intergenic
AAGGCAGAAAGCTGTACACC+AGG	0.614490	4:-85254098	None:intergenic
AAGTAGAACTCACATCATGT+AGG	0.524815	4:-85255215	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAGTCTTTATCAGGC+TGG	+	Chr4:85259409-85259428	MsG0480023450.01.T01:intron	30.0%
AAAAGGAGATAAAAAGGACA+TGG	-	Chr4:85255899-85255918	None:intergenic	30.0%
AAAGAGAATAACATAACCCT+AGG	-	Chr4:85260734-85260753	None:intergenic	30.0%
AACATACAATTCAAACACAC+CGG	+	Chr4:85260265-85260284	MsG0480023450.01.T01:intron	30.0%
AACGAAGACTTATTATTTGG+CGG	-	Chr4:85250949-85250968	None:intergenic	30.0%
AAGATATGTAGAGCAATCAT+AGG	+	Chr4:85260211-85260230	MsG0480023450.01.T01:intron	30.0%
AAGCATGATTAAAGACAAGA+TGG	-	Chr4:85256876-85256895	None:intergenic	30.0%
AAGGATTAAAAAAGGGAGAA+AGG	-	Chr4:85251741-85251760	None:intergenic	30.0%
AATACGTTAAAGCTCTCAAA+TGG	+	Chr4:85250536-85250555	MsG0480023450.01.T01:CDS	30.0%
AATATTAGAAACATGGCACA+AGG	-	Chr4:85257919-85257938	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	85250418	85261271	85250418	ID=MsG0480023450.01;Name=MsG0480023450.01
Chr4	mRNA	85250418	85261271	85250418	ID=MsG0480023450.01.T01;Parent=MsG0480023450.01;Name=MsG0480023450.01.T01;_AED=0.35;_eAED=0.36;_QI=0\|0\|0\|0.95\|1\|1\|21\|0\|1147
Chr4	exon	85250418	85250681	85250418	ID=MsG0480023450.01.T01:exon:1440;Parent=MsG0480023450.01.T01
Chr4	exon	85250763	85251111	85250763	ID=MsG0480023450.01.T01:exon:1441;Parent=MsG0480023450.01.T01
Chr4	exon	85251256	85251448	85251256	ID=MsG0480023450.01.T01:exon:1442;Parent=MsG0480023450.01.T01
Chr4	exon	85252084	85252207	85252084	ID=MsG0480023450.01.T01:exon:1443;Parent=MsG0480023450.01.T01
Chr4	exon	85253451	85253542	85253451	ID=MsG0480023450.01.T01:exon:1444;Parent=MsG0480023450.01.T01
Chr4	exon	85254076	85254174	85254076	ID=MsG0480023450.01.T01:exon:1445;Parent=MsG0480023450.01.T01
Chr4	exon	85254331	85254437	85254331	ID=MsG0480023450.01.T01:exon:1446;Parent=MsG0480023450.01.T01
Chr4	exon	85254512	85254793	85254512	ID=MsG0480023450.01.T01:exon:1447;Parent=MsG0480023450.01.T01
Chr4	exon	85254882	85254913	85254882	ID=MsG0480023450.01.T01:exon:1448;Parent=MsG0480023450.01.T01
Chr4	exon	85254997	85255224	85254997	ID=MsG0480023450.01.T01:exon:1449;Parent=MsG0480023450.01.T01
Chr4	exon	85255354	85255501	85255354	ID=MsG0480023450.01.T01:exon:1450;Parent=MsG0480023450.01.T01
Chr4	exon	85255720	85255836	85255720	ID=MsG0480023450.01.T01:exon:1451;Parent=MsG0480023450.01.T01
Chr4	exon	85256450	85256550	85256450	ID=MsG0480023450.01.T01:exon:1452;Parent=MsG0480023450.01.T01
Chr4	exon	85256678	85256801	85256678	ID=MsG0480023450.01.T01:exon:1453;Parent=MsG0480023450.01.T01
Chr4	exon	85257529	85257641	85257529	ID=MsG0480023450.01.T01:exon:1454;Parent=MsG0480023450.01.T01
Chr4	exon	85258073	85258244	85258073	ID=MsG0480023450.01.T01:exon:1455;Parent=MsG0480023450.01.T01
Chr4	exon	85258500	85258582	85258500	ID=MsG0480023450.01.T01:exon:1456;Parent=MsG0480023450.01.T01
Chr4	exon	85258682	85258746	85258682	ID=MsG0480023450.01.T01:exon:1457;Parent=MsG0480023450.01.T01
Chr4	exon	85258852	85258972	85258852	ID=MsG0480023450.01.T01:exon:1458;Parent=MsG0480023450.01.T01
Chr4	exon	85260557	85260674	85260557	ID=MsG0480023450.01.T01:exon:1459;Parent=MsG0480023450.01.T01
Chr4	exon	85260760	85261271	85260760	ID=MsG0480023450.01.T01:exon:1460;Parent=MsG0480023450.01.T01
Chr4	CDS	85250418	85250681	85250418	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01
Chr4	CDS	85250763	85251111	85250763	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01
Chr4	CDS	85251256	85251448	85251256	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01
Chr4	CDS	85252084	85252207	85252084	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01
Chr4	CDS	85253451	85253542	85253451	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01
Chr4	CDS	85254076	85254174	85254076	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01
Chr4	CDS	85254331	85254437	85254331	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01
Chr4	CDS	85254512	85254793	85254512	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01
Chr4	CDS	85254882	85254913	85254882	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01
Chr4	CDS	85254997	85255224	85254997	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01
Chr4	CDS	85255354	85255501	85255354	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01
Chr4	CDS	85255720	85255836	85255720	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01
Chr4	CDS	85256450	85256550	85256450	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01
Chr4	CDS	85256678	85256801	85256678	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01
Chr4	CDS	85257529	85257641	85257529	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01
Chr4	CDS	85258073	85258244	85258073	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01
Chr4	CDS	85258500	85258582	85258500	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01
Chr4	CDS	85258682	85258746	85258682	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01
Chr4	CDS	85258852	85258972	85258852	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01
Chr4	CDS	85260557	85260674	85260557	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01
Chr4	CDS	85260760	85261271	85260760	ID=MsG0480023450.01.T01:cds;Parent=MsG0480023450.01.T01

Gene Sequence

>MsG0480023450.01.T01

ATGGACTCAGAGCTCAAATCGGCGAAATCTGCTTACCGGAACGCCAAAGAAGAAGGTAACCACCGTGAAGAAGCGCGTTGGGCAAACGTCATCGGCGATATACTCAAGAACAGAGGTGAATACGTTAAAGCTCTCAAATGGCTCCGAATCGATTATGAAGTTTCGCTGAAGTTCTTATCGGAGAATCACTTAGTCACAACTTGTCAATCCCTCGGTGAAATCTATCTCCGTCTTGAGCAATTTTCCGATGCCCTAATTTTTCAGAAGAAACATCTAGATCTAGCAAGGGATAATGAAGATCTAGTTGAGCAACAAAGAGCTAGCACGCAGCTAGGTCGAACTTATCACGAACTGTTTTCGAGATCTGAACATGATCACAATTCAATTCGCAATGCGAAAAAGTATTTTAAGTCTGCTATGGATCTCGCCGTTAGTCTGAAAGAGAATCCGCCAAATAATAAGTCTTCGTTTTTGAAGGAATATATTGATGCTTATAATAACATTGGTATGCTTGAAATGGAGCTTGATAACTTGCACGAGGCGGCGAATATACTCAGGAGAGGATTGAAGATTTGCGACGAAGAGGAGATTAGCGAGTATGATGATGGGCGTATGCATTACCGGACTCAGAAGTATGAAGAGGCGCGGTCTTATTATGAGAAGGCGCTTGGTTTGGCGAAGTCTTTAGAGGATGAGGATGCTTTGGTCAGACAAATTAATCAGAACATTGAAACTGTTAAAGAAGCAGTTAAAGTTATGGATGAAATCAAGAAAGAAGAGCAGAAACTTAAAAACTCAAGAGAGATGGTAACGAGTGCCTCCGTCGCTGGGGCCAAGTATGCTCATTTCAACCTCAGAACTGTGTTTTCTGGAGTGTTGGAGTGTGTTCAATTGTACATTGTGTTTAAGAGACAAAGCTTAGCTGTCATGGGGCAAGCACTGGTGAAAATTAATATTGGTAATGTTTTGGATTCTACTCACAATTGGAAAGAAGCGTGTGATGCATATAAGGAGAGCTACAGGATTGCTGTTGAAGCAGACCTTCCTGGTGTACAGCTTTCTGCCTTGGAAAACATGCATTATAGCAACATGATCAGATTTGATGACGAGGATGAGACCAGGAGGTTGAAACTTCTAATTGATGAGCTTAAGAAGTCAAATGAAGAGATAGAGGCTAATAATGCGCCTGATGATTGTTGCTCTGAAACTGATACTGAAGCAGATGATTATGAATTGGATGATGATACTACGCCTCTTATGTCAATGTATCAGTCTATCAAAGGCTCATCTAGAAAAATTACAGGTCACAAGGAAAGTCATACCAACTCTACAAAGCAGGTTGACCAGTCACCCAGAAGTCTGACAAAACTAAAAAGTGAGCATCAAGCAGTTTCTGGTCGTAAACGTGTCCGTGTAATTCTTTCTGATGATGACGAGGATGATGAAGTGGAATGCTCAAGCAGAAAGGATCGTGACTACCCGTTAGAAGACTTGCCTAATTATGATACAATTAAAAGTAAAATCAGTCCTAGTAAAATTCAGGTTCTCCCGGAGTATGGATCTAAATGTGCAATTAATGTTGAAGAAAGTAGTAGTTCTTTCAAAGGCTCGAGTCCAAATACAGGCACTAAAACTTCCAGACGTTCCAGGTCATTGAGCAACGATATAGTTGCTGAACCTTACTTTCCTAGTGGTTCTAAATGCGATACAGATGTCTCTGGCAAACAAAATGTTGTAGCCCATCCCATGATGCATCATTCCCTACATGATAGATATATTGCATGTCGGATTGGGGATGATATAGTTTATGTAGAAGAAGCCTTGTGTGCTGCTGGTGATCAGTTTGACATTGACTCGTTAAAGGCTGTAGTTGCATGCAAATACTATCTACAATTTCCAGCAGAAAAGAAATCAGAGGGTTTGTTGCCCATTATTCAGCACATAAAGTGTGCTGGAGGAGATCTAGAATCGCTGGAAACTGTTGAAAATATTATGGAGCATCTGCAAAATAACATGGTTGAAGCTTTCATTGATGGATGGATTCAGAAGCGCCTAATAAAAATGTACGTAGACTGCTGCAAGGGGTTGTCTGTGGAACCAAAGATCAAGGTGCTGAAGAAACTTTACAATTTACAGGTTTCTGATGATGAAATCATTGCATCGGACTGCGACCTCCAAGATTTGTCCATAACACCATTGATCGATGCACTGCATTCACAGATGGCATTTTCAATGCTTGACATCTCTCACAATTGTTTAGGAAATGGGACAATGGAGAAACTTCGAAAGGTATTCACAACATCAGGTCAATCTTACGGCGACTTAACTCTGGATTTGCATTGTAATCGATTTGGCCCAACAACTTTGTTTCAGGATGCCGTTTTATTTGACCCATCCCCATTTGCTATTGTTGATATATTGAATTTCTGTCAGATTTGTGAATGCTCTGTGCTATTTGCTCGACTCGAAGTGCTTAACATTTCTGGAAACCGTCTTACTGATGCATGTGGATCTTATCTTTCAACAATCTTAAAAAACTGTACAGCTCTTTGTAGCTTGAATGTAGAGAACTGTAGTATCACATCCAAAACCATTCAAAAAATTGCTGATGCATTGGACTCTGGATCTGACACAATCCCTGTAACTGGGAATGCTGTGGTTAATCTTCTATCCAAGCTTTCTACTTTAAAAAGGTTTTCTGAGTTGAATATGAGTGGTCTAAAACTAGGCAGACCGGTTGTCGATAGCCTTTGCCAGCTTGCAGGGACCTTGACTTTATCAGGACTAATACTTGGAGGCACTGGTATTGGAAATGGCTGCAATACTCTATTTTCGCTTCTCATAAACTCACAATGCTGTCTCAAAGTTTTGGTCCTTAAGAAATGTCAACTTGGGCTTGCTGGAGTTGTTCACATAATTGAGGCTCTTGCAGATAACAGCAGCCTGGAGGAGCTTAATCTTGCTGATAATTCTGTTTCAACGGAACTTTCTGCTCAACAATGTGATGCATCAGCTAAAAGCTGTTCACAGAACCAGGAGCAGAAACTTGATACTATGAAAGTGGATGATAATCAAGAGGTCTTTTGCTCTCTAAATACTTTAGACGATCAGCTGGAAGTTGCTGATAGTGAAGATAATCAAGTTAGGGCAGAAGCTGCTGCTTCTGGAATTGACGACAGTTGTGCCAGTTCATGTCAAAGAAATTCATCTCCCAACTGCCATTTCACTCAGCAAATTTCAAGTGCTATTACAAAGGCAAAGAACTTACAATCTCTAGACCTTAGCAATAATAATTTTTCTGCACAAGCTGCAGAAACACTCTATGGTTCGTGGACAACTTTACGACCCCTTTCAAGTCACAGGCACATCACTAAGCACATTATCCATTTCTCAACAAAGGAAAAGAAATGCTGCAGCATGAAACCTTGCTGTAAGAAAGTTTGA

Protein sequence

>MsG0480023450.01.T01

MDSELKSAKSAYRNAKEEGNHREEARWANVIGDILKNRGEYVKALKWLRIDYEVSLKFLSENHLVTTCQSLGEIYLRLEQFSDALIFQKKHLDLARDNEDLVEQQRASTQLGRTYHELFSRSEHDHNSIRNAKKYFKSAMDLAVSLKENPPNNKSSFLKEYIDAYNNIGMLEMELDNLHEAANILRRGLKICDEEEISEYDDGRMHYRTQKYEEARSYYEKALGLAKSLEDEDALVRQINQNIETVKEAVKVMDEIKKEEQKLKNSREMVTSASVAGAKYAHFNLRTVFSGVLECVQLYIVFKRQSLAVMGQALVKINIGNVLDSTHNWKEACDAYKESYRIAVEADLPGVQLSALENMHYSNMIRFDDEDETRRLKLLIDELKKSNEEIEANNAPDDCCSETDTEADDYELDDDTTPLMSMYQSIKGSSRKITGHKESHTNSTKQVDQSPRSLTKLKSEHQAVSGRKRVRVILSDDDEDDEVECSSRKDRDYPLEDLPNYDTIKSKISPSKIQVLPEYGSKCAINVEESSSSFKGSSPNTGTKTSRRSRSLSNDIVAEPYFPSGSKCDTDVSGKQNVVAHPMMHHSLHDRYIACRIGDDIVYVEEALCAAGDQFDIDSLKAVVACKYYLQFPAEKKSEGLLPIIQHIKCAGGDLESLETVENIMEHLQNNMVEAFIDGWIQKRLIKMYVDCCKGLSVEPKIKVLKKLYNLQVSDDEIIASDCDLQDLSITPLIDALHSQMAFSMLDISHNCLGNGTMEKLRKVFTTSGQSYGDLTLDLHCNRFGPTTLFQDAVLFDPSPFAIVDILNFCQICECSVLFARLEVLNISGNRLTDACGSYLSTILKNCTALCSLNVENCSITSKTIQKIADALDSGSDTIPVTGNAVVNLLSKLSTLKRFSELNMSGLKLGRPVVDSLCQLAGTLTLSGLILGGTGIGNGCNTLFSLLINSQCCLKVLVLKKCQLGLAGVVHIIEALADNSSLEELNLADNSVSTELSAQQCDASAKSCSQNQEQKLDTMKVDDNQEVFCSLNTLDDQLEVADSEDNQVRAEAAASGIDDSCASSCQRNSSPNCHFTQQISSAITKAKNLQSLDLSNNNFSAQAAETLYGSWTTLRPLSSHRHITKHIIHFSTKEKKCCSMKPCCKKV*