AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012868.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012868.01.T01 MTR_3g033420 91.932 409 20 3 1 402 1 403 0.0 683
MsG0380012868.01.T01 MTR_3g033150 95.455 154 7 0 249 402 1 154 4.63e-93 276
MsG0380012868.01.T01 MTR_7g101840 35.216 301 182 3 113 401 254 553 6.00e-48 171
MsG0380012868.01.T01 MTR_3g118290 36.709 237 150 0 166 402 335 571 1.67e-45 165
MsG0380012868.01.T01 MTR_1g063850 35.294 238 154 0 164 401 320 557 4.48e-41 153
MsG0380012868.01.T01 MTR_0172s0030 33.903 351 192 9 71 390 149 490 6.08e-41 152
MsG0380012868.01.T01 MTR_1g007370 34.177 237 149 2 166 401 317 547 1.55e-37 143
MsG0380012868.01.T01 MTR_3g090900 29.070 258 176 4 149 402 260 514 4.65e-18 86.3
MsG0380012868.01.T01 MTR_1g007370 40.000 85 51 0 159 243 310 394 9.07e-16 79.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012868.01.T01 AT5G13730 55.082 305 121 2 108 400 114 414 7.02e-109 327
MsG0380012868.01.T01 AT1G08540 31.624 351 222 5 64 402 225 569 2.10e-46 167
MsG0380012868.01.T01 AT2G36990 33.003 303 192 2 110 401 241 543 2.54e-46 167
MsG0380012868.01.T01 AT1G64860 33.431 341 200 8 71 390 154 488 3.57e-39 147
MsG0380012868.01.T01 AT3G53920 33.333 237 157 1 166 401 333 569 5.56e-35 136
MsG0380012868.01.T01 AT1G64860 32.288 319 189 8 71 368 154 466 7.31e-32 126
MsG0380012868.01.T01 AT5G24120 27.064 218 151 3 188 402 305 517 5.66e-16 80.1
MsG0380012868.01.T01 AT5G24120 27.064 218 151 3 188 402 305 517 5.66e-16 80.1
MsG0380012868.01.T01 AT5G24120 27.064 218 151 3 188 402 305 517 5.66e-16 80.1
MsG0380012868.01.T01 AT3G53920 42.308 78 45 0 166 243 333 410 1.49e-14 75.5

Find 76 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGTACAAATTTGGTTTA+TGG 0.107276 3:-25934158 MsG0380012868.01.T01:CDS
TTCAAAATTTGGTACAAATT+TGG 0.133370 3:-25934165 MsG0380012868.01.T01:CDS
ACTATTATACCTTCAAAATT+TGG 0.177191 3:-25934176 MsG0380012868.01.T01:CDS
ATAGCTCTGTCCAATGAAAT+TGG 0.288432 3:+25932221 None:intergenic
TCTGATTAAGATTTATGAAT+AGG 0.314242 3:-25931762 MsG0380012868.01.T01:three_prime_UTR
ACAAGGCATGATTAAAGCTT+TGG 0.334814 3:-25932984 MsG0380012868.01.T01:CDS
TATTTATAGGGAGAAAAGTA+TGG 0.343959 3:-25932380 MsG0380012868.01.T01:intron
GCTAGAAATGCTGCAGCATC+TGG 0.366186 3:-25934071 MsG0380012868.01.T01:CDS
GACAGCTTACATCCTCTATC+TGG 0.371740 3:+25933031 None:intergenic
GGAACCATTGGACTTCTTCA+TGG 0.384588 3:-25933070 MsG0380012868.01.T01:CDS
AGCTTCATCCACAGCATCAT+TGG 0.391120 3:+25934091 None:intergenic
ATATTATACTTTGGACTCAA+TGG 0.405310 3:-25931934 MsG0380012868.01.T01:CDS
GTCTTTAGAGATGGAAAAGT+TGG 0.408480 3:+25934227 None:intergenic
AATGCTGCAGCATCTGGAAT+TGG 0.414472 3:-25934065 MsG0380012868.01.T01:CDS
TTCTCCGGAATCATTTCAAC+TGG 0.416683 3:+25932036 None:intergenic
GAGCAGACAACCAATTTCAT+TGG 0.418328 3:-25932231 MsG0380012868.01.T01:CDS
AAGCATTCAAGATCTCATTC+AGG 0.419494 3:-25933169 MsG0380012868.01.T01:intron
AGCTGTCTACATATGTTTAC+TGG 0.421708 3:-25933015 MsG0380012868.01.T01:CDS
CACCGGTAATCTGACTAATC+TGG 0.431896 3:+25932952 None:intergenic
ATGTTTATTGAATATGCATC+AGG 0.441611 3:-25931631 MsG0380012868.01.T01:three_prime_UTR
GAATGTTGATGTCTGGTTTG+TGG 0.442578 3:+25934274 None:intergenic
AGAGACTCCTCTGTCGTTTG+AGG 0.444724 3:-25931911 MsG0380012868.01.T01:CDS
GAGATTGTAATATTATACTT+TGG 0.445378 3:-25931943 MsG0380012868.01.T01:CDS
GCATAGGAATTGATGATATG+AGG 0.447616 3:-25934034 MsG0380012868.01.T01:CDS
GTCCAGATTAGTCAGATTAC+CGG 0.449365 3:-25932954 MsG0380012868.01.T01:intron
TTGAGGCAGAAAGAGGTTGT+AGG 0.456214 3:-25933939 MsG0380012868.01.T01:CDS
GAGAAATTTGATCCAGATAG+AGG 0.470579 3:-25933043 MsG0380012868.01.T01:CDS
GTTGATGTCTGGTTTGTGGA+TGG 0.471649 3:+25934278 None:intergenic
GAAAGTTGTTGAAACTATCA+AGG 0.474029 3:-25931882 MsG0380012868.01.T01:CDS
ATGATATGAGGAGGAAGAGA+AGG 0.474045 3:-25934022 MsG0380012868.01.T01:CDS
TGAAATGATTCCGGAGAAGA+TGG 0.476752 3:-25932031 MsG0380012868.01.T01:CDS
CAATTTCTTGAGGCAGAAAG+AGG 0.481320 3:-25933946 MsG0380012868.01.T01:CDS
TGGTAGGGAATGTTGATGTC+TGG 0.489773 3:+25934267 None:intergenic
GAGAGAATCAGACAGATTCA+TGG 0.502535 3:-25931859 MsG0380012868.01.T01:CDS
TTTAACCAGGAAGGAACCAT+TGG 0.503437 3:-25933082 MsG0380012868.01.T01:intron
AGAGGCAGTTAGTGAAGCAA+GGG 0.505063 3:-25932005 MsG0380012868.01.T01:CDS
TGAGCTTTGTTTATGTCTCA+AGG 0.505679 3:-25933877 MsG0380012868.01.T01:intron
TTGTAGGGTCTGTGACATCA+AGG 0.514482 3:-25933923 MsG0380012868.01.T01:CDS
GGAATCATTTCAACTGGTCC+TGG 0.514681 3:+25932042 None:intergenic
AGGACCAGTTGAAATGATTC+CGG 0.517293 3:-25932040 MsG0380012868.01.T01:CDS
TGCCTCTCAACCATCTTCTC+CGG 0.517628 3:+25932021 None:intergenic
CAGTATTAAGTTGCTCTGAT+CGG 0.520178 3:+25932196 None:intergenic
TGAGGCAGAAAGAGGTTGTA+GGG 0.522827 3:-25933938 MsG0380012868.01.T01:CDS
TCAATCGCAGCACGTTATCA+AGG 0.523165 3:-25933201 MsG0380012868.01.T01:CDS
CAGTAAAACTTGTTTCTGAA+AGG 0.538799 3:-25932253 MsG0380012868.01.T01:CDS
TCAGCAATTTCATTATATGT+CGG 0.554776 3:+25932299 None:intergenic
GAGAGGCAGTTAGTGAAGCA+AGG 0.557933 3:-25932006 MsG0380012868.01.T01:CDS
GAATGGTGTGTCTTTAGAGA+TGG 0.559338 3:+25934218 None:intergenic
TCTTAAGACATTGTTAGCCT+CGG 0.567970 3:+25932340 None:intergenic
ATAGGGAGAAAAGTATGGAA+TGG 0.569556 3:-25932375 MsG0380012868.01.T01:intron
CATATCAAACTCGTATCTCA+AGG 0.573669 3:+25931713 None:intergenic
CAAAGAATGACAGAACATGA+AGG 0.577006 3:-25933315 MsG0380012868.01.T01:CDS
AGTGATGTTAGAGACATGGT+AGG 0.595530 3:+25934251 None:intergenic
CCTCTGTCGTTTGAGGAGAT+CGG 0.595985 3:-25931904 MsG0380012868.01.T01:CDS
TGCTCCATGAAGAAGTCCAA+TGG 0.596543 3:+25933066 None:intergenic
AAAGAATGACAGAACATGAA+GGG 0.599007 3:-25933314 MsG0380012868.01.T01:CDS
TGGAAGTGATGTTAGAGACA+TGG 0.602214 3:+25934247 None:intergenic
ATAATGCAGGAGATTATACC+AGG 0.604707 3:-25932060 MsG0380012868.01.T01:intron
GCAGCACGTTATCAAGGCAA+AGG 0.605612 3:-25933195 MsG0380012868.01.T01:CDS
AAAGTTGTTGAAACTATCAA+GGG 0.605974 3:-25931881 MsG0380012868.01.T01:CDS
GGAATTGGAAAAGAGTGCAT+AGG 0.606727 3:-25934050 MsG0380012868.01.T01:CDS
TCAGAGCAACTTAATACTGA+AGG 0.606839 3:-25932192 MsG0380012868.01.T01:intron
TGTCTACATATGTTTACTGG+TGG 0.613609 3:-25933012 MsG0380012868.01.T01:CDS
GTTTACTGGTGGATTAAACA+AGG 0.614224 3:-25933001 MsG0380012868.01.T01:CDS
TTCCGGAGAAGATGGTTGAG+AGG 0.622689 3:-25932023 MsG0380012868.01.T01:CDS
ATATTCAGAACAATTTCTTG+AGG 0.629406 3:-25933956 MsG0380012868.01.T01:CDS
CCGATCTCCTCAAACGACAG+AGG 0.631040 3:+25931904 None:intergenic
TGGTGATGCATTAGTCATTG+TGG 0.632961 3:-25934138 MsG0380012868.01.T01:CDS
GTGATGTTAGAGACATGGTA+GGG 0.635108 3:+25934252 None:intergenic
TGCATTAGCCAATGATGCTG+TGG 0.639996 3:-25934099 MsG0380012868.01.T01:CDS
GACATATAATGAAATTGCTG+AGG 0.644481 3:-25932297 MsG0380012868.01.T01:CDS
TAGGAATTGATGATATGAGG+AGG 0.652900 3:-25934031 MsG0380012868.01.T01:CDS
GAGGCAGTTAGTGAAGCAAG+GGG 0.667329 3:-25932004 MsG0380012868.01.T01:CDS
TCTTAAGACGAAGACTGAGG+CGG 0.681542 3:-25932325 MsG0380012868.01.T01:CDS
AGATTAGCTCGTGATTATCG+CGG 0.696504 3:-25933234 MsG0380012868.01.T01:CDS
ATGTCTTAAGACGAAGACTG+AGG 0.725315 3:-25932328 MsG0380012868.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTTTTATAACATTTTTT+GGG - Chr3:25932964-25932983 MsG0380012868.01.T01:CDS 10.0%
!! AAAATTTGCATTATACAAAA+TGG + Chr3:25932455-25932474 None:intergenic 15.0%
!! AATGAATTATGAAAACTTAA+CGG + Chr3:25933145-25933164 None:intergenic 15.0%
!! AATGATTAATGAATATAACA+GGG + Chr3:25932322-25932341 None:intergenic 15.0%
!!! CACTTTTTTATAACATTTTT+TGG - Chr3:25932963-25932982 MsG0380012868.01.T01:CDS 15.0%
!!! CTTTTTTATAACATTTTTTG+GGG - Chr3:25932965-25932984 MsG0380012868.01.T01:CDS 15.0%
!!! TTTTTTATAACATTTTTTGG+GGG - Chr3:25932966-25932985 MsG0380012868.01.T01:CDS 15.0%
!! ACTATTATACCTTCAAAATT+TGG - Chr3:25931713-25931732 MsG0380012868.01.T01:three_prime_UTR 20.0%
!! AGAAAAAGAAGGAAAAATTT+GGG - Chr3:25931890-25931909 MsG0380012868.01.T01:CDS 20.0%
!! GAATGATTAATGAATATAAC+AGG + Chr3:25932323-25932342 None:intergenic 20.0%
!! GAGATTGTAATATTATACTT+TGG - Chr3:25933946-25933965 MsG0380012868.01.T01:CDS 20.0%
!! TATAAACCGGAAAATAAAAT+TGG - Chr3:25933281-25933300 MsG0380012868.01.T01:CDS 20.0%
!! TCTGATTAAGATTTATGAAT+AGG - Chr3:25934127-25934146 MsG0380012868.01.T01:CDS 20.0%
!! TTAAAATTGTAGACATTAAC+AGG - Chr3:25932137-25932156 MsG0380012868.01.T01:intron 20.0%
!! TTCAAAATTTGGTACAAATT+TGG - Chr3:25931724-25931743 MsG0380012868.01.T01:three_prime_UTR 20.0%
!! TTCCTTAAAATTACAATTCT+AGG + Chr3:25932207-25932226 None:intergenic 20.0%
!!! AAATTTGTACCAAATTTTGA+AGG + Chr3:25931725-25931744 None:intergenic 20.0%
!!! AATTTTGAAGGTATAATAGT+AGG + Chr3:25931713-25931732 None:intergenic 20.0%
!!! AATTTTGTTAGAAAGTAAAC+AGG - Chr3:25933337-25933356 MsG0380012868.01.T01:CDS 20.0%
!!! ATTTGTTAAAGTTTCTCATT+AGG - Chr3:25932772-25932791 MsG0380012868.01.T01:intron 20.0%
!!! ATTTTACAACTATTCTAAGA+AGG - Chr3:25933032-25933051 MsG0380012868.01.T01:CDS 20.0%
!!! GACAATTTCATTTGTATTTT+AGG - Chr3:25933723-25933742 MsG0380012868.01.T01:intron 20.0%
!!! TACAATTTTAAGGACTAAAA+TGG + Chr3:25932128-25932147 None:intergenic 20.0%
!!! TAGTAACCAATTTTATTTTC+CGG + Chr3:25933290-25933309 None:intergenic 20.0%
!!! TGGTTAGTTTGTTATTTATA+GGG - Chr3:25933497-25933516 MsG0380012868.01.T01:intron 20.0%
!!! TGTTAATGTCTACAATTTTA+AGG + Chr3:25932138-25932157 None:intergenic 20.0%
!!! TTGGTTAGTTTGTTATTTAT+AGG - Chr3:25933496-25933515 MsG0380012868.01.T01:intron 20.0%
!!! TTTTATTTTCCGGTTTATAT+CGG + Chr3:25933280-25933299 None:intergenic 20.0%
! AAAGTTGTTGAAACTATCAA+GGG - Chr3:25934008-25934027 MsG0380012868.01.T01:CDS 25.0%
! AACTTCGAAATCAATTTGAA+TGG + Chr3:25932381-25932400 None:intergenic 25.0%
! ATATTATACTTTGGACTCAA+TGG - Chr3:25933955-25933974 MsG0380012868.01.T01:CDS 25.0%
! ATATTCAGAACAATTTCTTG+AGG - Chr3:25931933-25931952 MsG0380012868.01.T01:CDS 25.0%
! ATGTTTATTGAATATGCATC+AGG - Chr3:25934258-25934277 MsG0380012868.01.T01:exon 25.0%
! GACTGTTTATTATGAATGTT+TGG - Chr3:25933477-25933496 MsG0380012868.01.T01:intron 25.0%
! GAGAAAAAGAAGGAAAAATT+TGG - Chr3:25931889-25931908 MsG0380012868.01.T01:CDS 25.0%
! TACAAAATGGATGATAAGTT+AGG + Chr3:25932442-25932461 None:intergenic 25.0%
! TATTTATAGGGAGAAAAGTA+TGG - Chr3:25933509-25933528 MsG0380012868.01.T01:intron 25.0%
! TCAGCAATTTCATTATATGT+CGG + Chr3:25933593-25933612 None:intergenic 25.0%
! TCTTTACTATGATATAATGC+AGG - Chr3:25933816-25933835 MsG0380012868.01.T01:intron 25.0%
! TTGTACATAATTAACGTACA+TGG - Chr3:25932344-25932363 MsG0380012868.01.T01:CDS 25.0%
! TTTAATTCATTTAACCAGGA+AGG - Chr3:25932798-25932817 MsG0380012868.01.T01:intron 25.0%
!! ACTTTTACTGATGTATGTTT+CGG + Chr3:25933250-25933269 None:intergenic 25.0%
!! CACTATTTTCATAAACTCTT+TGG - Chr3:25933371-25933390 MsG0380012868.01.T01:intron 25.0%
!! GTAAATTTTGTTGAAGTGAA+TGG + Chr3:25931691-25931710 None:intergenic 25.0%
!! GTCCTAGAATTGTAATTTTA+AGG - Chr3:25932202-25932221 MsG0380012868.01.T01:CDS 25.0%
!! TTTGGTACAAATTTGGTTTA+TGG - Chr3:25931731-25931750 MsG0380012868.01.T01:three_prime_UTR 25.0%
!!! AATTTTAAGGACTAAAATGG+TGG + Chr3:25932125-25932144 None:intergenic 25.0%
!!! ATTTTAAGGACTAAAATGGT+GGG + Chr3:25932124-25932143 None:intergenic 25.0%
!!! GCATTTTAATTCATTTAACC+AGG - Chr3:25932794-25932813 MsG0380012868.01.T01:intron 25.0%
AAAGAATGACAGAACATGAA+GGG - Chr3:25932575-25932594 MsG0380012868.01.T01:intron 30.0%
ATTCAGTCATATCCTAAGTT+TGG - Chr3:25933105-25933124 MsG0380012868.01.T01:intron 30.0%
GAAAGTTGTTGAAACTATCA+AGG - Chr3:25934007-25934026 MsG0380012868.01.T01:CDS 30.0%
GAAGAACTTATACCAAACTT+AGG + Chr3:25933120-25933139 None:intergenic 30.0%
GACATATAATGAAATTGCTG+AGG - Chr3:25933592-25933611 MsG0380012868.01.T01:intron 30.0%
GTTAACGATGATTAAAATCG+TGG - Chr3:25932259-25932278 MsG0380012868.01.T01:CDS 30.0%
GTTGATATACCGATATAAAC+CGG - Chr3:25933268-25933287 MsG0380012868.01.T01:CDS 30.0%
TAAATTCACATTCCACTAAC+AGG - Chr3:25932491-25932510 MsG0380012868.01.T01:intron 30.0%
TTGATTAGACGAAGTTTCTT+CGG - Chr3:25933180-25933199 MsG0380012868.01.T01:CDS 30.0%
TTTGTGTGTTGAATAACAAC+AGG - Chr3:25932522-25932541 MsG0380012868.01.T01:intron 30.0%
! AAGGAAAAATTTGGGATGTA+TGG - Chr3:25931898-25931917 MsG0380012868.01.T01:CDS 30.0%
! TATAATGCAAATTTTCCTGC+TGG - Chr3:25932460-25932479 MsG0380012868.01.T01:intron 30.0%
!! CAGTAAAACTTGTTTCTGAA+AGG - Chr3:25933636-25933655 MsG0380012868.01.T01:intron 30.0%
!! GTTATAAAAAAGTGTCTCAC+CGG + Chr3:25932957-25932976 None:intergenic 30.0%
!!! GTTTTTGAGTTCAATAGAAG+AGG - Chr3:25931988-25932007 MsG0380012868.01.T01:CDS 30.0%
!!! TTATAACATTTTTTGGGGGT+GGG - Chr3:25932970-25932989 MsG0380012868.01.T01:CDS 30.0%
!!! TTTATAACATTTTTTGGGGG+TGG - Chr3:25932969-25932988 MsG0380012868.01.T01:CDS 30.0%
AAGCATTCAAGATCTCATTC+AGG - Chr3:25932720-25932739 MsG0380012868.01.T01:intron 35.0%
ACAAGGCATGATTAAAGCTT+TGG - Chr3:25932905-25932924 MsG0380012868.01.T01:intron 35.0%
AGCTGTCTACATATGTTTAC+TGG - Chr3:25932874-25932893 MsG0380012868.01.T01:intron 35.0%
ATAATGCAGGAGATTATACC+AGG - Chr3:25933829-25933848 MsG0380012868.01.T01:intron 35.0%
CAAAGAATGACAGAACATGA+AGG - Chr3:25932574-25932593 MsG0380012868.01.T01:intron 35.0%
CAAATGCATAATCCTGTTAG+TGG + Chr3:25932506-25932525 None:intergenic 35.0%
CATATCAAACTCGTATCTCA+AGG + Chr3:25934179-25934198 None:intergenic 35.0%
CTTACTATGCAACACTTCTA+TGG - Chr3:25933432-25933451 MsG0380012868.01.T01:intron 35.0%
GAATTTAAATCCTATCCAGC+AGG + Chr3:25932478-25932497 None:intergenic 35.0%
GAGAAATTTGATCCAGATAG+AGG - Chr3:25932846-25932865 MsG0380012868.01.T01:intron 35.0%
TCAGAGCAACTTAATACTGA+AGG - Chr3:25933697-25933716 MsG0380012868.01.T01:intron 35.0%
TCGTGGTTAATTGTGTTATG+TGG - Chr3:25932276-25932295 MsG0380012868.01.T01:CDS 35.0%
TGTCTACATATGTTTACTGG+TGG - Chr3:25932877-25932896 MsG0380012868.01.T01:intron 35.0%
TGTGTTGAATAACAACAGGA+GGG - Chr3:25932526-25932545 MsG0380012868.01.T01:intron 35.0%
! ATAGCTCTGTCCAATGAAAT+TGG + Chr3:25933671-25933690 None:intergenic 35.0%
! ATAGGGAGAAAAGTATGGAA+TGG - Chr3:25933514-25933533 MsG0380012868.01.T01:intron 35.0%
! CAGTATTAAGTTGCTCTGAT+CGG + Chr3:25933696-25933715 None:intergenic 35.0%
! GAAAAATTTGGGATGTATGG+TGG - Chr3:25931901-25931920 MsG0380012868.01.T01:CDS 35.0%
! GCATAGGAATTGATGATATG+AGG - Chr3:25931855-25931874 MsG0380012868.01.T01:CDS 35.0%
! GTCTTTAGAGATGGAAAAGT+TGG + Chr3:25931665-25931684 None:intergenic 35.0%
! TAGGAATTGATGATATGAGG+AGG - Chr3:25931858-25931877 MsG0380012868.01.T01:CDS 35.0%
! TCTTAAGACATTGTTAGCCT+CGG + Chr3:25933552-25933571 None:intergenic 35.0%
!! GTTTACTGGTGGATTAAACA+AGG - Chr3:25932888-25932907 MsG0380012868.01.T01:intron 35.0%
!! TGAGCTTTGTTTATGTCTCA+AGG - Chr3:25932012-25932031 MsG0380012868.01.T01:CDS 35.0%
!!! TATAACATTTTTTGGGGGTG+GGG - Chr3:25932971-25932990 MsG0380012868.01.T01:CDS 35.0%
AGGACCAGTTGAAATGATTC+CGG - Chr3:25933849-25933868 MsG0380012868.01.T01:intron 40.0%
AGTGATGTTAGAGACATGGT+AGG + Chr3:25931641-25931660 None:intergenic 40.0%
ATGATATGAGGAGGAAGAGA+AGG - Chr3:25931867-25931886 MsG0380012868.01.T01:CDS 40.0%
ATGTCTTAAGACGAAGACTG+AGG - Chr3:25933561-25933580 MsG0380012868.01.T01:intron 40.0%
CAATTTCTTGAGGCAGAAAG+AGG - Chr3:25931943-25931962 MsG0380012868.01.T01:CDS 40.0%
GAGAGAATCAGACAGATTCA+TGG - Chr3:25934030-25934049 MsG0380012868.01.T01:CDS 40.0%
GAGCAGACAACCAATTTCAT+TGG - Chr3:25933658-25933677 MsG0380012868.01.T01:intron 40.0%
GGAAGAGAAGGAGAAAAAGA+AGG - Chr3:25931879-25931898 MsG0380012868.01.T01:CDS 40.0%
GTGATGTTAGAGACATGGTA+GGG + Chr3:25931640-25931659 None:intergenic 40.0%
GTGTGTTGAATAACAACAGG+AGG - Chr3:25932525-25932544 MsG0380012868.01.T01:intron 40.0%
GTGTTGAATAACAACAGGAG+GGG - Chr3:25932527-25932546 MsG0380012868.01.T01:intron 40.0%
TGAAATGATTCCGGAGAAGA+TGG - Chr3:25933858-25933877 MsG0380012868.01.T01:intron 40.0%
TGGAAGTGATGTTAGAGACA+TGG + Chr3:25931645-25931664 None:intergenic 40.0%
TGTTGAATAACAACAGGAGG+GGG - Chr3:25932528-25932547 MsG0380012868.01.T01:intron 40.0%
TTCTCCGGAATCATTTCAAC+TGG + Chr3:25933856-25933875 None:intergenic 40.0%
TTTAACCAGGAAGGAACCAT+TGG - Chr3:25932807-25932826 MsG0380012868.01.T01:intron 40.0%
! AGATTAGCTCGTGATTATCG+CGG - Chr3:25932655-25932674 MsG0380012868.01.T01:intron 40.0%
! GAATGGTGTGTCTTTAGAGA+TGG + Chr3:25931674-25931693 None:intergenic 40.0%
! GAATGTTGATGTCTGGTTTG+TGG + Chr3:25931618-25931637 None:intergenic 40.0%
! GGAATTGGAAAAGAGTGCAT+AGG - Chr3:25931839-25931858 MsG0380012868.01.T01:CDS 40.0%
! GTCCAGATTAGTCAGATTAC+CGG - Chr3:25932935-25932954 MsG0380012868.01.T01:intron 40.0%
! TGCAAATTTTCCTGCTGGAT+AGG - Chr3:25932465-25932484 MsG0380012868.01.T01:intron 40.0%
! TGGTGATGCATTAGTCATTG+TGG - Chr3:25931751-25931770 MsG0380012868.01.T01:three_prime_UTR 40.0%
!!! ATAACATTTTTTGGGGGTGG+GGG - Chr3:25932972-25932991 MsG0380012868.01.T01:CDS 40.0%
AATGGTTGCAAAAATCGCCG+AGG - Chr3:25933532-25933551 MsG0380012868.01.T01:intron 45.0%
AGAGGCAGTTAGTGAAGCAA+GGG - Chr3:25933884-25933903 MsG0380012868.01.T01:CDS 45.0%
AGCTTCATCCACAGCATCAT+TGG + Chr3:25931801-25931820 None:intergenic 45.0%
ATCATGTCACTCAAGAGACG+CGG + Chr3:25933067-25933086 None:intergenic 45.0%
CACCGGTAATCTGACTAATC+TGG + Chr3:25932940-25932959 None:intergenic 45.0%
GACAGCTTACATCCTCTATC+TGG + Chr3:25932861-25932880 None:intergenic 45.0%
GGAACCATTGGACTTCTTCA+TGG - Chr3:25932819-25932838 MsG0380012868.01.T01:intron 45.0%
GGAATCATTTCAACTGGTCC+TGG + Chr3:25933850-25933869 None:intergenic 45.0%
TCAATCGCAGCACGTTATCA+AGG - Chr3:25932688-25932707 MsG0380012868.01.T01:intron 45.0%
TCTTAAGACGAAGACTGAGG+CGG - Chr3:25933564-25933583 MsG0380012868.01.T01:intron 45.0%
TGAGGCAGAAAGAGGTTGTA+GGG - Chr3:25931951-25931970 MsG0380012868.01.T01:CDS 45.0%
TGCATTAGCCAATGATGCTG+TGG - Chr3:25931790-25931809 MsG0380012868.01.T01:exon 45.0%
TGCTCCATGAAGAAGTCCAA+TGG + Chr3:25932826-25932845 None:intergenic 45.0%
TGGTAGGGAATGTTGATGTC+TGG + Chr3:25931625-25931644 None:intergenic 45.0%
TTGAGGCAGAAAGAGGTTGT+AGG - Chr3:25931950-25931969 MsG0380012868.01.T01:CDS 45.0%
TTGTAGGGTCTGTGACATCA+AGG - Chr3:25931966-25931985 MsG0380012868.01.T01:CDS 45.0%
! AATGCTGCAGCATCTGGAAT+TGG - Chr3:25931824-25931843 MsG0380012868.01.T01:CDS 45.0%
GAAGTCCAATGGTTCCTTCC+TGG + Chr3:25932815-25932834 None:intergenic 50.0%
GAGAGGCAGTTAGTGAAGCA+AGG - Chr3:25933883-25933902 MsG0380012868.01.T01:CDS 50.0%
GAGGCAGTTAGTGAAGCAAG+GGG - Chr3:25933885-25933904 MsG0380012868.01.T01:CDS 50.0%
GCAGCACGTTATCAAGGCAA+AGG - Chr3:25932694-25932713 MsG0380012868.01.T01:intron 50.0%
GCTAGAAATGCTGCAGCATC+TGG - Chr3:25931818-25931837 MsG0380012868.01.T01:CDS 50.0%
TGCCTCTCAACCATCTTCTC+CGG + Chr3:25933871-25933890 None:intergenic 50.0%
TTCCGGAGAAGATGGTTGAG+AGG - Chr3:25933866-25933885 MsG0380012868.01.T01:intron 50.0%
! AGAGACTCCTCTGTCGTTTG+AGG - Chr3:25933978-25933997 MsG0380012868.01.T01:CDS 50.0%
! CCTCTGTCGTTTGAGGAGAT+CGG - Chr3:25933985-25934004 MsG0380012868.01.T01:CDS 50.0%
CCGATCTCCTCAAACGACAG+AGG + Chr3:25933988-25934007 None:intergenic 55.0%
TTTCTTCGGTCTCGTGCACG+TGG - Chr3:25933194-25933213 MsG0380012868.01.T01:CDS 55.0%
CTCGTGCACGTGGAGGTTAC+TGG - Chr3:25933204-25933223 MsG0380012868.01.T01:CDS 60.0%
CTTCGGTCTCGTGCACGTGG+AGG - Chr3:25933197-25933216 MsG0380012868.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 25931613 25934298 25931613 ID=MsG0380012868.01;Name=MsG0380012868.01
Chr3 mRNA 25931613 25934298 25931613 ID=MsG0380012868.01.T01;Parent=MsG0380012868.01;Name=MsG0380012868.01.T01;_AED=0.30;_eAED=0.30;_QI=31|0.75|0.8|1|1|1|5|182|402
Chr3 exon 25931613 25932073 25931613 ID=MsG0380012868.01.T01:exon:16436;Parent=MsG0380012868.01.T01
Chr3 exon 25932193 25932393 25932193 ID=MsG0380012868.01.T01:exon:16435;Parent=MsG0380012868.01.T01
Chr3 exon 25932955 25933095 25932955 ID=MsG0380012868.01.T01:exon:16434;Parent=MsG0380012868.01.T01
Chr3 exon 25933170 25933367 25933170 ID=MsG0380012868.01.T01:exon:16433;Parent=MsG0380012868.01.T01
Chr3 exon 25933878 25934298 25933878 ID=MsG0380012868.01.T01:exon:16432;Parent=MsG0380012868.01.T01
Chr3 five_prime_UTR 25934268 25934298 25934268 ID=MsG0380012868.01.T01:five_prime_utr;Parent=MsG0380012868.01.T01
Chr3 CDS 25933878 25934267 25933878 ID=MsG0380012868.01.T01:cds;Parent=MsG0380012868.01.T01
Chr3 CDS 25933170 25933367 25933170 ID=MsG0380012868.01.T01:cds;Parent=MsG0380012868.01.T01
Chr3 CDS 25932955 25933095 25932955 ID=MsG0380012868.01.T01:cds;Parent=MsG0380012868.01.T01
Chr3 CDS 25932193 25932393 25932193 ID=MsG0380012868.01.T01:cds;Parent=MsG0380012868.01.T01
Chr3 CDS 25931795 25932073 25931795 ID=MsG0380012868.01.T01:cds;Parent=MsG0380012868.01.T01
Chr3 three_prime_UTR 25931613 25931794 25931613 ID=MsG0380012868.01.T01:three_prime_utr;Parent=MsG0380012868.01.T01
Gene Sequence

>MsG0380012868.01.T01

ATGTCTCTAACATCACTTCCAACTTTTCCATCTCTAAAGACACACCATTCACTTCAACAAAATTTACCTACTATTATACCTTCAAAATTTGGTACAAATTTGGTTTATGGTGATGCATTAGTCATTGTGGCAGCAACAGAAGCAGTTGCATTAGCCAATGATGCTGTGGATGAAGCTAGAAATGCTGCAGCATCTGGAATTGGAAAAGAGTGCATAGGAATTGATGATATGAGGAGGAAGAGAAGGAGAAAAAGAAGGAAAAATTTGGGATGTATGGTGGAAGAAGAGAATATTCAGAACAATTTCTTGAGGCAGAAAGAGGTTGTAGGGTCTGTGACATCAAGGTTTTTGAGTTCAATAGAAGAGGCTGAGCTTTGTTTATGTCTCAAGGAGGGGGCAAAGATTATTGAAGTTGCTAAGCAAAGAATGACAGAACATGAAGGGAATTCTGCTATTTCAAGTGTAGATAAAGTGTTGATTAATACAAGACAATCAAAAGAAAGATTAGCTCGTGATTATCGCGGTTTAGTTGCATCAATCGCAGCACGTTATCAAGGCAAAGGCTTAAGCATTCAAGATCTCATTCAGGAAGGAACCATTGGACTTCTTCATGGAGCAGAGAAATTTGATCCAGATAGAGGATGTAAGCTGTCTACATATGTTTACTGGTGGATTAAACAAGGCATGATTAAAGCTTTGGCGAAGAAGTCCAGATTAGTCAGATTACCGGGAGAAAAGTATGGAATGGTTGCAAAAATCGCCGAGGCTAACAATGTCTTAAGACGAAGACTGAGGCGGAAGCCGACATATAATGAAATTGCTGAGGTTCTCAATGTGAATGTTTCAACAGTAAAACTTGTTTCTGAAAGGAGCAGACAACCAATTTCATTGGACAGAGCTATAACCGATCAGAGCAACTTAATACTGAAGGAGATTATACCAGGACCAGTTGAAATGATTCCGGAGAAGATGGTTGAGAGGCAGTTAGTGAAGCAAGGGGTTGTGAAGCTTCTTAACACACTTAACAAGAGAGAAGAAGAGATTGTAATATTATACTTTGGACTCAATGGAGAGACTCCTCTGTCGTTTGAGGAGATCGGAAAGTTGTTGAAACTATCAAGGGAGAGAATCAGACAGATTCATGGCATTGCATTGTCAAAATTGCAACAAAACTCACTTGTAGATAGTCTAAAGTTTTATGTTGTATAG

Protein sequence

>MsG0380012868.01.T01

MSLTSLPTFPSLKTHHSLQQNLPTIIPSKFGTNLVYGDALVIVAATEAVALANDAVDEARNAAASGIGKECIGIDDMRRKRRRKRRKNLGCMVEEENIQNNFLRQKEVVGSVTSRFLSSIEEAELCLCLKEGAKIIEVAKQRMTEHEGNSAISSVDKVLINTRQSKERLARDYRGLVASIAARYQGKGLSIQDLIQEGTIGLLHGAEKFDPDRGCKLSTYVYWWIKQGMIKALAKKSRLVRLPGEKYGMVAKIAEANNVLRRRLRRKPTYNEIAEVLNVNVSTVKLVSERSRQPISLDRAITDQSNLILKEIIPGPVEMIPEKMVERQLVKQGVVKLLNTLNKREEEIVILYFGLNGETPLSFEEIGKLLKLSRERIRQIHGIALSKLQQNSLVDSLKFYVV*