AlfalfaGEDB | MsG0780041598.01

M. sativa cultivar ZhongmuNo.1 / MsG0780041598.01

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041598.01.T01	KDP23430.1	82.589	224	21	2	8	231	29	234	2.05E-121	363

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041598.01.T01	Q84JM4	75.877	228	36	3	3	230	25	233	8.93E-108	338

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041598.01.T01	A0A067JTV1	82.589	224	21	2	8	231	29	234	9.80e-122	363

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048374.01	MsG0780041598.01	0.843440	1.399727e-58	2.190192e-55
MsG0180003411.01	MsG0780041598.01	0.841316	5.115676e-58	7.487641e-55
MsG0180005985.01	MsG0780041598.01	0.807995	3.849308e-50	2.175390e-47
MsG0280006304.01	MsG0780041598.01	0.842087	3.202974e-58	4.803150e-55
MsG0280007803.01	MsG0780041598.01	0.823199	1.575252e-53	1.347215e-50
MsG0280007829.01	MsG0780041598.01	0.815792	7.710069e-52	5.367921e-49
MsG0280007830.01	MsG0780041598.01	0.828239	1.003952e-54	9.921260e-52
MsG0280010866.01	MsG0780041598.01	0.800920	1.149128e-48	5.416723e-46
MsG0280011055.01	MsG0780041598.01	0.819449	1.154596e-52	8.887934e-50
MsG0280011056.01	MsG0780041598.01	0.801009	1.102107e-48	5.206997e-46

Showing 1 to 10 of 31 entries

Previous1 2 3 4Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041598.01.T01	MTR_1g083700	83.036	224	20	2	8	231	29	234	2.13e-122	375
MsG0780041598.01.T01	MTR_7g112460	88.341	223	8	2	8	230	29	233	5.41e-120	368
MsG0780041598.01.T01	MTR_4g120900	73.991	223	40	2	8	230	29	233	2.59e-105	329
MsG0780041598.01.T01	MTR_4g009840	62.745	255	71	4	8	256	29	265	1.63e-98	311
MsG0780041598.01.T01	MTR_2g104140	69.333	225	50	3	8	231	29	235	2.34e-98	310
MsG0780041598.01.T01	MTR_2g104140	69.333	225	50	3	8	231	44	250	3.35e-98	310
MsG0780041598.01.T01	MTR_2g104140	69.333	225	50	3	8	231	29	235	3.36e-98	310
MsG0780041598.01.T01	MTR_2g104140	69.333	225	50	3	8	231	44	250	3.96e-98	310
MsG0780041598.01.T01	MTR_2g104140	69.333	225	50	3	8	231	44	250	4.39e-98	310
MsG0780041598.01.T01	MTR_4g114980	69.298	228	50	4	3	229	25	233	2.57e-97	308

Showing 1 to 10 of 22 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0780041598.01.T01	AT5G27030	75.877	228	36	3	3	230	25	233	9.11e-109	338
MsG0780041598.01.T01	AT5G27030	75.877	228	36	3	3	230	25	233	1.69e-108	338
MsG0780041598.01.T01	AT3G16830	73.991	223	40	2	8	230	29	233	1.40e-105	330
MsG0780041598.01.T01	AT1G15750	63.922	255	68	4	8	256	29	265	5.93e-102	320
MsG0780041598.01.T01	AT1G15750	63.922	255	68	4	8	256	29	265	5.93e-102	320
MsG0780041598.01.T01	AT1G15750	63.922	255	68	4	8	256	29	265	5.93e-102	320
MsG0780041598.01.T01	AT1G15750	63.922	255	68	4	8	256	29	265	5.93e-102	320
MsG0780041598.01.T01	AT1G80490	70.222	225	48	3	8	231	29	235	4.65e-99	312
MsG0780041598.01.T01	AT1G80490	70.222	225	48	3	8	231	29	235	4.65e-99	312
MsG0780041598.01.T01	AT1G80490	70.222	225	48	3	8	231	29	235	4.83e-99	312

Showing 1 to 10 of 18 entries

Previous1 2Next

Find 51 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTACAGGCTGGTGAAT+GGG	0.495810	7:-92869906	MsG0780041598.01.T01:CDS
AAAGGCTGTTGAGATATTAG+TGG	0.567393	7:-92869653	MsG0780041598.01.T01:CDS
AAGGCTGTTGAGATATTAGT+GGG	0.624809	7:-92869652	MsG0780041598.01.T01:CDS
AAGTTGAGAAGTATTTATCA+GGG	0.525650	7:-92869880	MsG0780041598.01.T01:CDS
AATACCTGGAAGCACTTGAT+AGG	0.415450	7:-92869796	MsG0780041598.01.T01:intron
AATCAGGAAGCAGAAATACC+TGG	0.565513	7:-92869810	MsG0780041598.01.T01:CDS
AATCTTGACGACTTCAGAGT+AGG	0.566734	7:+92869176	None:intergenic
AATGAGCAGCTGTCTAAGTA+TGG	0.433756	7:-92869287	MsG0780041598.01.T01:CDS
AATTAGTAAGAGTTAACAGC+TGG	0.473156	7:+92869578	None:intergenic
ACAAGCTTATCACGGAACAG+AGG	0.688697	7:+92869203	None:intergenic

Showing 1 to 10 of 51 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAGACTCATATAACGATAAC+AGG	-	Chr7:92868874-92868893	MsG0780041598.01.T01:intron	30.0%
AATTAGTAAGAGTTAACAGC+TGG	+	Chr7:92868733-92868752	None:intergenic	30.0%
AGACTCATATAACGATAACA+GGG	-	Chr7:92868875-92868894	MsG0780041598.01.T01:intron	30.0%
AGAGTTAAAAAAGCTCATAG+AGG	-	Chr7:92869077-92869096	MsG0780041598.01.T01:intron	30.0%
AGTCTTGCAGCTTAATAAAT+TGG	+	Chr7:92868965-92868984	None:intergenic	30.0%
ATTAACTGCTTGTAGTTAGT+TGG	-	Chr7:92869271-92869290	MsG0780041598.01.T01:CDS	30.0%
ATTAGTAAGAGTTAACAGCT+GGG	+	Chr7:92868732-92868751	None:intergenic	30.0%
TAATAAATTGGCAAGTCTAC+TGG	+	Chr7:92868953-92868972	None:intergenic	30.0%
TTAACTGCTTGTAGTTAGTT+GGG	-	Chr7:92869272-92869291	MsG0780041598.01.T01:CDS	30.0%
TTGTATGCTGTATCTTATCT+TGG	-	Chr7:92868798-92868817	MsG0780041598.01.T01:intron	30.0%

Showing 1 to 10 of 108 entries

Previous1 2 3 4 5…11Next

Chromosome	Type	Strat	End	Strand	Name
Chr7	gene	92868337	92869993	92868337	ID=MsG0780041598.01;Name=MsG0780041598.01
Chr7	mRNA	92868337	92869993	92868337	ID=MsG0780041598.01.T01;Parent=MsG0780041598.01;Name=MsG0780041598.01.T01;_AED=0.46;_eAED=0.46;_QI=0\|0\|0\|1\|1\|1\|4\|0\|256
Chr7	exon	92869797	92869993	92869797	ID=MsG0780041598.01.T01:exon:40741;Parent=MsG0780041598.01.T01
Chr7	exon	92869574	92869687	92869574	ID=MsG0780041598.01.T01:exon:40740;Parent=MsG0780041598.01.T01
Chr7	exon	92869155	92869313	92869155	ID=MsG0780041598.01.T01:exon:40739;Parent=MsG0780041598.01.T01
Chr7	exon	92868337	92868637	92868337	ID=MsG0780041598.01.T01:exon:40738;Parent=MsG0780041598.01.T01
Chr7	CDS	92869797	92869993	92869797	ID=MsG0780041598.01.T01:cds;Parent=MsG0780041598.01.T01
Chr7	CDS	92869574	92869687	92869574	ID=MsG0780041598.01.T01:cds;Parent=MsG0780041598.01.T01
Chr7	CDS	92869155	92869313	92869155	ID=MsG0780041598.01.T01:cds;Parent=MsG0780041598.01.T01
Chr7	CDS	92868337	92868637	92868337	ID=MsG0780041598.01.T01:cds;Parent=MsG0780041598.01.T01

Gene Sequence

>MsG0780041598.01.T01

ATGCTTGTTTACCGTGTAGGTGAGAAAGAATCCGGGTTTTTCTTCAATATGAAATACTTTGAGGAAAAAGTACAGGCTGGTGAATGGGAGGAAGTTGAGAAGTATTTATCAGGGTTTACCAAAGTTGATGATAATAGATACTCCATGAAAATATTCTTTGAAATCAGGAAGCAGAAATACCTGGAAGCACTTGATAGGCAAGACAAGCCAAAGGCTGTTGAGATATTAGTGGGTGATTTGAAAGTATTCTCGACTTTCAATGAGGAACTATACAAAGAAATAACCCAGCTGTTAACTCTTACTAATTTCAGGGAGAATGAGCAGCTGTCTAAGTATGGTGACACCAAAACTGCTCGAGGGATTATGCTGTTAGAGTTAAAAAAGCTCATAGAGGCAAATCCTCTGTTCCGTGATAAGCTTGTCTTCCCTACTCTGAAGTCGTCAAGATTGCGGACATTAATCAATCAAAGTGTGTTATTCCTTGCCTATTCTACTATAATCCTTATCCACCCTTTGTTAATACAGTTTGAACTGGCAACACCAGCTATGCAAAAACCAAGGCCAAACCCAGATATAAAAACTTTATTTATTGATCACTCATGTACACCTTCCAATGGTCCTCTAGCACCAACACCTGTCAATCTTCCAGTTGCTGCTGTTGCAAAGCCTGCTGCTTATACTTCTCTTGGAGGGAGCTCATGGTGTATGATACCTTGCATTTTAAAAAATTGGTTCCTTACACTTAAAAATCTAATTTATCATGTTGTTTAA

Protein sequence

>MsG0780041598.01.T01

MLVYRVGEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLTLTNFRENEQLSKYGDTKTARGIMLLELKKLIEANPLFRDKLVFPTLKSSRLRTLINQSVLFLAYSTIILIHPLLIQFELATPAMQKPRPNPDIKTLFIDHSCTPSNGPLAPTPVNLPVAAVAKPAAYTSLGGSSWCMIPCILKNWFLTLKNLIYHVV*