AlfalfaGEDB | MsG0280011056.01

M. sativa cultivar ZhongmuNo.1 / MsG0280011056.01

KEGG: K00106
GO: GO:0009055 GO:0051536 GO:0051537
PFAM: PF00111

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011056.01.T01	XP_003597436.2	77.228	101	0	1	1	101	1	78	1.48E-42	159

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011056.01.T01	Q8GUQ8	54.255	94	18	2	1	94	1	69	8.45E-12	63.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011056.01.T01	G7IUC2	77.228	101	0	1	1	101	1	78	7.05e-43	159

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048178.01	MsG0280011056.01	0.824765	6.761162e-54	6.046001e-51
MsG0080048602.01	MsG0280011056.01	0.827055	1.932821e-54	1.845098e-51
MsG0180000146.01	MsG0280011056.01	0.805194	1.501778e-49	7.895488e-47
MsG0180000741.01	MsG0280011056.01	0.807832	4.169183e-50	2.346067e-47
MsG0180000856.01	MsG0280011056.01	0.841110	5.796857e-58	8.430339e-55
MsG0180001922.01	MsG0280011056.01	0.837172	6.081601e-57	7.835453e-54
MsG0180002071.01	MsG0280011056.01	0.815228	1.029316e-51	7.055576e-49
MsG0180002300.01	MsG0280011056.01	0.825735	3.987136e-54	3.665134e-51
MsG0180002709.01	MsG0280011056.01	0.804736	1.872218e-49	9.728454e-47
MsG0180003190.01	MsG0280011056.01	0.820521	6.563308e-53	5.204986e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011056.01.T01	MTR_2g098030	77.228	101	0	1	1	101	1	78	1.79e-46	159
MsG0280011056.01.T01	MTR_2g098030	76.042	96	0	1	6	101	2	74	4.58e-43	149

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280011056.01.T01	AT4G34890	54.255	94	18	2	1	94	1	69	8.61e-13	63.2
MsG0280011056.01.T01	AT4G34900	58.667	75	8	1	20	94	10	61	2.43e-11	58.9
MsG0280011056.01.T01	AT4G34900	58.667	75	8	1	20	94	10	61	2.66e-11	58.9

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Find 16 sgRNAs with CRISPR-Local

Find 40 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTAGGCTGCGGTGAAGG+TGG	0.616523	2:-78935675	MsG0280011056.01.T01:CDS
AATGGGATCATTGAAGAAGA+TGG	0.478328	2:-78936626	MsG0280011056.01.T01:CDS
ACAGGGACTAAACTAGGCTG+CGG	0.662518	2:-78935684	MsG0280011056.01.T01:CDS
ACTAAACTAGGCTGCGGTGA+AGG	0.573452	2:-78935678	MsG0280011056.01.T01:CDS
ACTCTACTTGAATATCTCAG+AGG	0.680280	2:-78936514	MsG0280011056.01.T01:CDS
ATAAAAGATATAGGTCTGAC+AGG	0.487880	2:-78935702	MsG0280011056.01.T01:CDS
ATCATTGAAGAAGATGGATT+CGG	0.493401	2:-78936620	MsG0280011056.01.T01:CDS
ATTCCGTTAACGTATAATAT+TGG	0.300188	2:+78936571	None:intergenic
CTCATTATGATACCAATTTG+AGG	0.434944	2:-78935626	MsG0280011056.01.T01:CDS
CTCTTTGGTATAAAAGATAT+AGG	0.478305	2:-78935711	MsG0280011056.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTTAGTTGTTTATCCAAAC+AGG	-	Chr2:78936130-78936149	MsG0280011056.01.T01:intron	30.0%
ATAAAAGATATAGGTCTGAC+AGG	-	Chr2:78936537-78936556	MsG0280011056.01.T01:CDS	30.0%
CTCATTATGATACCAATTTG+AGG	-	Chr2:78936613-78936632	MsG0280011056.01.T01:CDS	30.0%
TAAAAGATATAGGTCTGACA+GGG	-	Chr2:78936538-78936557	MsG0280011056.01.T01:CDS	30.0%
ACTCTACTTGAATATCTCAG+AGG	-	Chr2:78935725-78935744	MsG0280011056.01.T01:intron	35.0%
CTCGTATAAGTCAATTCAGA+CGG	+	Chr2:78935903-78935922	None:intergenic	35.0%
GAAATAGCTTATGGCTTATG+CGG	-	Chr2:78936019-78936038	MsG0280011056.01.T01:intron	35.0%
TACTACTTGTGAGAACGTTT+GGG	-	Chr2:78935848-78935867	MsG0280011056.01.T01:intron	35.0%
TTACTACTTGTGAGAACGTT+TGG	-	Chr2:78935847-78935866	MsG0280011056.01.T01:intron	35.0%
CTTATGGACATAGTCCTGTT+TGG	+	Chr2:78936147-78936166	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	78935614	78936647	78935614	ID=MsG0280011056.01;Name=MsG0280011056.01
Chr2	mRNA	78935614	78936647	78935614	ID=MsG0280011056.01.T01;Parent=MsG0280011056.01;Name=MsG0280011056.01.T01;_AED=0.52;_eAED=0.52;_QI=0\|0\|0\|1\|0\|0\|2\|0\|101
Chr2	exon	78936471	78936647	78936471	ID=MsG0280011056.01.T01:exon:17428;Parent=MsG0280011056.01.T01
Chr2	exon	78935614	78935742	78935614	ID=MsG0280011056.01.T01:exon:17427;Parent=MsG0280011056.01.T01
Chr2	CDS	78936471	78936647	78936471	ID=MsG0280011056.01.T01:cds;Parent=MsG0280011056.01.T01
Chr2	CDS	78935614	78935742	78935614	ID=MsG0280011056.01.T01:cds;Parent=MsG0280011056.01.T01

Gene Sequence	>MsG0280011056.01.T01 ATGGGATCATTGAAGAAGATGGATTCGGTTGAGCGCGATTTGAAGAACGATTCTCCAATATTATACGTTAACGGAATTCGTAGAGTTTTGCCTCATGACTTAGCTCATTTCACTCTACTTGAATATCTCAGAGGTATATATTATTATTATACTCAATTTTCTGCTTATTTATTTAAGTTTTCCACTCTCTTTGGTATAAAAGATATAGGTCTGACAGGGACTAAACTAGGCTGCGGTGAAGGTGGTTGTGGAGCTTGTACTGTTATGGTTTCTCATTATGATACCAATTTGAGGAAAACCTTGTGA
Protein sequence	>MsG0280011056.01.T01 MGSLKKMDSVERDLKNDSPILYVNGIRRVLPHDLAHFTLLEYLRGIYYYYTQFSAYLFKFSTLFGIKDIGLTGTKLGCGEGGCGACTVMVSHYDTNLRKTL*