AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880041949.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880041949.01.T01 MTR_8g007305 90.452 199 13 1 1 199 110 302 3.59e-128 366
MsG0880041949.01.T01 MTR_8g007305 90.452 199 13 1 1 199 110 302 9.64e-128 365
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880041949.01.T01 AT3G04600 77.387 199 39 1 1 199 111 303 5.56e-110 320
MsG0880041949.01.T01 AT3G04600 77.387 199 39 1 1 199 111 303 5.56e-110 320
MsG0880041949.01.T01 AT3G04600 76.382 199 41 1 1 199 111 303 2.22e-108 317

Find 39 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAAAGATATAAAGAATA+AGG 0.259062 8:+1617026 MsG0880041949.01.T01:CDS
TCTCGTGTCATTCTAAAATA+AGG 0.271174 8:-1616593 None:intergenic
AGTCACATATATTGCAGAAT+TGG 0.322629 8:-1616998 None:intergenic
ACTGGTTTGCAGGGAGAAAC+AGG 0.371599 8:+1616955 MsG0880041949.01.T01:intron
TTCATTGGGGAAGATCATAT+TGG 0.383446 8:+1614724 MsG0880041949.01.T01:CDS
CATTCTCCCTCGCAAGTCTT+CGG 0.384368 8:-1613570 None:intergenic
CTGTACCATGTTTCTGTAGA+AGG 0.384390 8:-1614656 None:intergenic
CATAATAATACCTGTAATGC+AGG 0.410204 8:-1616671 None:intergenic
CGAGATGTTGCTCCTAAAAT+CGG 0.410210 8:+1616611 MsG0880041949.01.T01:CDS
TCATTTCCGCATCTATTTGA+AGG 0.415383 8:+1615640 MsG0880041949.01.T01:CDS
GTCACATATATTGCAGAATT+GGG 0.419509 8:-1616997 None:intergenic
TCTGTAGAAGGCACTGGAAA+AGG 0.445844 8:-1614644 None:intergenic
TCTGATTTCGATTATGTTGG+CGG 0.458631 8:+1613642 MsG0880041949.01.T01:CDS
TACAGAAACATGGTACAGAT+TGG 0.487410 8:+1614661 MsG0880041949.01.T01:CDS
TATTGCAGAATTGGGATCAC+TGG 0.491302 8:-1616989 None:intergenic
GTGACTTATAACCAGGTTGT+TGG 0.494656 8:+1614691 MsG0880041949.01.T01:CDS
AATAGATGCGGAAATGAACT+AGG 0.511327 8:-1615634 None:intergenic
CATGTTTCTGTAGAAGGCAC+TGG 0.524741 8:-1614650 None:intergenic
CTGATTTCGATTATGTTGGC+GGG 0.525861 8:+1613643 MsG0880041949.01.T01:CDS
AATGATGATTCAATCAAAGC+GGG 0.550310 8:-1616644 None:intergenic
AATTCCTTGTGCAATCGACC+AGG 0.553489 8:+1615684 MsG0880041949.01.T01:CDS
GCAAAGGATATCATTGCTTG+TGG 0.562729 8:+1613592 MsG0880041949.01.T01:CDS
CTGATGATGAGAAGTTCTTG+TGG 0.574190 8:+1613524 MsG0880041949.01.T01:CDS
AAAGCGTGTGACTTATAACC+AGG 0.579420 8:+1614684 MsG0880041949.01.T01:CDS
GAGATGGACCATACCTGCAC+AGG 0.588794 8:-1614763 None:intergenic
ATGGACCATACCTGCACAGG+TGG 0.591242 8:-1614760 None:intergenic
GGAAATGAACTAGGAAATGA+TGG 0.593362 8:-1615625 None:intergenic
CAGTGCCTTCTACAGAAACA+TGG 0.599354 8:+1614651 MsG0880041949.01.T01:CDS
TGTGGTGGTAAATGCTGTGT+AGG 0.601419 8:+1613458 None:intergenic
TCTTTGCCTTCAAATAGATG+CGG 0.615484 8:-1615646 None:intergenic
CAAACCTGGTCGATTGCACA+AGG 0.616426 8:-1615688 None:intergenic
AGGAGAGCCGAAGACTTGCG+AGG 0.626856 8:+1613563 MsG0880041949.01.T01:CDS
GCTGTGTAGGTATTTGCAAG+AGG 0.629181 8:+1613471 MsG0880041949.01.T01:CDS
ATAATAATACCTGTAATGCA+GGG 0.633106 8:-1616670 None:intergenic
GGAGAGCCGAAGACTTGCGA+GGG 0.653928 8:+1613564 MsG0880041949.01.T01:CDS
ACTTGCGAGGGAGAATGCAA+AGG 0.667394 8:+1613576 MsG0880041949.01.T01:CDS
AAATGATGATTCAATCAAAG+CGG 0.671076 8:-1616645 None:intergenic
TCAGTGAGCTGTATAACCAG+AGG 0.702408 8:-1613505 None:intergenic
TTGCACAAGGAATTAAACAA+CGG 0.723636 8:-1615675 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAATTTAAATTGGTTT+GGG + Chr8:1614214-1614233 MsG0880041949.01.T01:intron 10.0%
!! AATATGGCAAAAATATTATT+TGG - Chr8:1615046-1615065 None:intergenic 15.0%
!!! ATGTTTTTTTTGAATATAAC+TGG + Chr8:1616937-1616956 MsG0880041949.01.T01:intron 15.0%
!!! GTTTAAAATTTAAATTGGTT+TGG + Chr8:1614213-1614232 MsG0880041949.01.T01:intron 15.0%
!!! TGGTTGTTTAAAATTTAAAT+TGG + Chr8:1614208-1614227 MsG0880041949.01.T01:intron 15.0%
!!! TTAAAATTTAAATTGGTTTG+GGG + Chr8:1614215-1614234 MsG0880041949.01.T01:intron 15.0%
!!! TTGTATTTATTGATTCTATT+AGG + Chr8:1614482-1614501 MsG0880041949.01.T01:intron 15.0%
!!! TTTAAAATGAATTCTGAATT+AGG + Chr8:1613865-1613884 MsG0880041949.01.T01:intron 15.0%
!! AAGTTCTATTAAGAGAAAAA+TGG + Chr8:1614398-1614417 MsG0880041949.01.T01:intron 20.0%
!! AGTCTGGATAAAATTATAAA+TGG + Chr8:1615184-1615203 MsG0880041949.01.T01:intron 20.0%
!! GAAATATTCAACAATTCTTA+TGG + Chr8:1615352-1615371 MsG0880041949.01.T01:intron 20.0%
!! GTCTGGATAAAATTATAAAT+GGG + Chr8:1615185-1615204 MsG0880041949.01.T01:intron 20.0%
!! TCTAAGTGATTATTATTTGA+TGG + Chr8:1614043-1614062 MsG0880041949.01.T01:intron 20.0%
!! TGCAAAAGATATAAAGAATA+AGG + Chr8:1617026-1617045 MsG0880041949.01.T01:CDS 20.0%
!! TGTGTGTGTTTAAATTAAAA+AGG - Chr8:1614345-1614364 None:intergenic 20.0%
!!! AATCATGTCAATCTAAAATA+AGG - Chr8:1616495-1616514 None:intergenic 20.0%
!!! CAACCATTATTTCTAAATAT+GGG - Chr8:1614190-1614209 None:intergenic 20.0%
!!! CTTTTAATAACACATAGTTA+AGG - Chr8:1616114-1616133 None:intergenic 20.0%
!!! GATAAAATTATAAATGGGTT+AGG + Chr8:1615190-1615209 MsG0880041949.01.T01:intron 20.0%
!!! TGATTATAGTTTTTGTTCTT+AGG - Chr8:1614071-1614090 None:intergenic 20.0%
!!! TGTGCTTTATTAACTATTTT+GGG + Chr8:1614163-1614182 MsG0880041949.01.T01:intron 20.0%
!!! TGTTCTAAAATAAATGTTAC+TGG + Chr8:1614298-1614317 MsG0880041949.01.T01:intron 20.0%
! AAAAAAAACATTGAGCAAAC+AGG - Chr8:1616928-1616947 None:intergenic 25.0%
! AAAACGATAAAGGTTATGTT+AGG - Chr8:1613981-1614000 None:intergenic 25.0%
! AAAATGAAGATAAAGTGACA+TGG - Chr8:1614887-1614906 None:intergenic 25.0%
! AAATGAAGATAAAGTGACAT+GGG - Chr8:1614886-1614905 None:intergenic 25.0%
! AAATGATGATTCAATCAAAG+CGG - Chr8:1616648-1616667 None:intergenic 25.0%
! AACAAAACATACAGTTATAC+AGG - Chr8:1616902-1616921 None:intergenic 25.0%
! ATAATAATACCTGTAATGCA+GGG - Chr8:1616673-1616692 None:intergenic 25.0%
! ATATATGAGAGAAAATGCAA+TGG - Chr8:1616764-1616783 None:intergenic 25.0%
! ATGAATTCTGAATTAGGAAA+TGG + Chr8:1613871-1613890 MsG0880041949.01.T01:intron 25.0%
! CCATATTTAGAAATAATGGT+TGG + Chr8:1614188-1614207 MsG0880041949.01.T01:intron 25.0%
! CTCATGATTAAATTGTTGAA+TGG - Chr8:1615269-1615288 None:intergenic 25.0%
! GTAATTGTAACTGTACATAT+AGG - Chr8:1614518-1614537 None:intergenic 25.0%
! TACAAAATCCTGAGATAATA+TGG - Chr8:1615062-1615081 None:intergenic 25.0%
! TATTTAGCTAATGCAAACAT+CGG + Chr8:1616781-1616800 MsG0880041949.01.T01:intron 25.0%
!! CACAGTTACAATCTAAAATA+AGG - Chr8:1616550-1616569 None:intergenic 25.0%
!! CATTTTCATGAATCTCATTT+GGG + Chr8:1616824-1616843 MsG0880041949.01.T01:intron 25.0%
!! CTTGAGATTTTGTAGAATTT+TGG + Chr8:1613741-1613760 MsG0880041949.01.T01:intron 25.0%
!! GTATTTTTCTATGAATGTTG+TGG + Chr8:1614107-1614126 MsG0880041949.01.T01:intron 25.0%
!! TTTTCTGATTTCGATTATGT+TGG + Chr8:1613639-1613658 MsG0880041949.01.T01:CDS 25.0%
!! TTTTTCCTTTCAATATCTAC+AGG - Chr8:1615852-1615871 None:intergenic 25.0%
!!! CCAACCATTATTTCTAAATA+TGG - Chr8:1614191-1614210 None:intergenic 25.0%
!!! CTGTGCTTTATTAACTATTT+TGG + Chr8:1614162-1614181 MsG0880041949.01.T01:intron 25.0%
!!! TATTTTTGCCATATTATCTC+AGG + Chr8:1615051-1615070 MsG0880041949.01.T01:intron 25.0%
!!! TTGTTTTGTTTTGTTTATGC+AGG + Chr8:1615597-1615616 MsG0880041949.01.T01:intron 25.0%
AAACACAGTTACAAAAGAAC+AGG - Chr8:1616306-1616325 None:intergenic 30.0%
AAAGCAACAACAGATATTGA+TGG - Chr8:1615102-1615121 None:intergenic 30.0%
AACTAACTACTACAACTGTT+AGG + Chr8:1614559-1614578 MsG0880041949.01.T01:intron 30.0%
AAGCAACAACAGATATTGAT+GGG - Chr8:1615101-1615120 None:intergenic 30.0%
AATCACATTCTTAAGTTTGC+AGG - Chr8:1613847-1613866 None:intergenic 30.0%
AATGATGATTCAATCAAAGC+GGG - Chr8:1616647-1616666 None:intergenic 30.0%
ACTTTATTGTTCTCAGATGA+CGG - Chr8:1614382-1614401 None:intergenic 30.0%
AGAAAAATACAATTGTGCAC+AGG - Chr8:1614097-1614116 None:intergenic 30.0%
AGAAAAGATGAAGTGAACAT+CGG - Chr8:1616200-1616219 None:intergenic 30.0%
AGTACAGTGAAGAATATTTC+TGG - Chr8:1614144-1614163 None:intergenic 30.0%
AGTCACATATATTGCAGAAT+TGG - Chr8:1617001-1617020 None:intergenic 30.0%
ATATTCGTACACATCATGAT+TGG + Chr8:1614241-1614260 MsG0880041949.01.T01:intron 30.0%
ATTTAGCTAATGCAAACATC+GGG + Chr8:1616782-1616801 MsG0880041949.01.T01:intron 30.0%
CAAGAAGTTTACAGAAACAT+AGG - Chr8:1615795-1615814 None:intergenic 30.0%
CATAATAATACCTGTAATGC+AGG - Chr8:1616674-1616693 None:intergenic 30.0%
CTTGAGAAGAGTTTATAAAG+AGG + Chr8:1616391-1616410 MsG0880041949.01.T01:intron 30.0%
CTTTAGTAATAGTATGAGTC+TGG + Chr8:1615168-1615187 MsG0880041949.01.T01:intron 30.0%
GAATTATAAACCTCAGCTTT+AGG + Chr8:1615384-1615403 MsG0880041949.01.T01:intron 30.0%
GGTCCCATATTTAGAAATAA+TGG + Chr8:1614184-1614203 MsG0880041949.01.T01:intron 30.0%
GTCACATATATTGCAGAATT+GGG - Chr8:1617000-1617019 None:intergenic 30.0%
GTGGAAAAATCTTACTATAG+AGG + Chr8:1613543-1613562 MsG0880041949.01.T01:CDS 30.0%
TAACCAGTGTTGTCAAATAT+CGG + Chr8:1615896-1615915 MsG0880041949.01.T01:intron 30.0%
TATTCGTACACATCATGATT+GGG + Chr8:1614242-1614261 MsG0880041949.01.T01:intron 30.0%
TCTGAATTAGGAAATGGAAA+TGG + Chr8:1613877-1613896 MsG0880041949.01.T01:intron 30.0%
TCTTTCTAATATCTTCCATG+CGG + Chr8:1616217-1616236 MsG0880041949.01.T01:intron 30.0%
TGTATCATTGTCAAATGAAC+AGG - Chr8:1615534-1615553 None:intergenic 30.0%
TGTCATTGTAATGAATATCG+AGG - Chr8:1616462-1616481 None:intergenic 30.0%
TGTTTCTTTATGACAACTAC+AGG + Chr8:1616522-1616541 MsG0880041949.01.T01:intron 30.0%
TGTTTCTTTATGACTGTTAG+CGG + Chr8:1616321-1616340 MsG0880041949.01.T01:intron 30.0%
TTAAGCCTAGAAAACGATAA+AGG - Chr8:1613991-1614010 None:intergenic 30.0%
TTGCACAAGGAATTAAACAA+CGG - Chr8:1615678-1615697 None:intergenic 30.0%
TTTGGATTATTTGTAGTTGC+AGG + Chr8:1613759-1613778 MsG0880041949.01.T01:intron 30.0%
! AATTGGCATTTTCTTCTCTT+AGG + Chr8:1616079-1616098 MsG0880041949.01.T01:intron 30.0%
! AGATTTTTATCTATCCGATG+TGG - Chr8:1616373-1616392 None:intergenic 30.0%
! CATAACCTTTATCGTTTTCT+AGG + Chr8:1613983-1614002 MsG0880041949.01.T01:intron 30.0%
! CTTTTGTCATCTTGACATTA+AGG + Chr8:1615118-1615137 MsG0880041949.01.T01:intron 30.0%
! GATTTTTATCTATCCGATGT+GGG - Chr8:1616372-1616391 None:intergenic 30.0%
! GCATTTTCATGAATCTCATT+TGG + Chr8:1616823-1616842 MsG0880041949.01.T01:intron 30.0%
! TCAATCTAAAATAAGGATCC+TGG - Chr8:1616488-1616507 None:intergenic 30.0%
!! ATTTCTAGCACTTTGGTTAT+TGG + Chr8:1615317-1615336 MsG0880041949.01.T01:intron 30.0%
!! CATATTTTGCGTTTGTTACT+TGG + Chr8:1615552-1615571 MsG0880041949.01.T01:intron 30.0%
!! TATAAATGGGTTAGGATTCA+TGG + Chr8:1615198-1615217 MsG0880041949.01.T01:intron 30.0%
!! TCTCGTGTCATTCTAAAATA+AGG - Chr8:1616596-1616615 None:intergenic 30.0%
!! TGTCAAATATCGGTGTTTTT+GGG + Chr8:1615906-1615925 MsG0880041949.01.T01:intron 30.0%
!! TTGAATATAACTGGTTTGCA+GGG + Chr8:1616946-1616965 MsG0880041949.01.T01:intron 30.0%
!! TTGTCAAATATCGGTGTTTT+TGG + Chr8:1615905-1615924 MsG0880041949.01.T01:intron 30.0%
!! TTTGAATATAACTGGTTTGC+AGG + Chr8:1616945-1616964 MsG0880041949.01.T01:intron 30.0%
AAACATCAGACAAACAAACC+TGG - Chr8:1615705-1615724 None:intergenic 35.0%
AAGATGAACTAGTATGACCA+TGG + Chr8:1615750-1615769 MsG0880041949.01.T01:intron 35.0%
AAGCAGAAATATTCCATGAC+AGG - Chr8:1614807-1614826 None:intergenic 35.0%
AATAGATGCGGAAATGAACT+AGG - Chr8:1615637-1615656 None:intergenic 35.0%
ACACACCTGTAGATATTGAA+AGG + Chr8:1615844-1615863 MsG0880041949.01.T01:intron 35.0%
AGCAACAACAGATATTGATG+GGG - Chr8:1615100-1615119 None:intergenic 35.0%
ATGCAACATAGACAGTTGTT+TGG + Chr8:1614010-1614029 MsG0880041949.01.T01:intron 35.0%
CTAACTCATCCATACAAAAC+CGG - Chr8:1616438-1616457 None:intergenic 35.0%
CTTTATTGTTCTCAGATGAC+GGG - Chr8:1614381-1614400 None:intergenic 35.0%
GAAAAGATGAAGTGAACATC+GGG - Chr8:1616199-1616218 None:intergenic 35.0%
GAGAAGAGTTTATAAAGAGG+AGG + Chr8:1616394-1616413 MsG0880041949.01.T01:intron 35.0%
GGAAATGAACTAGGAAATGA+TGG - Chr8:1615628-1615647 None:intergenic 35.0%
TACAGAAACATGGTACAGAT+TGG + Chr8:1614661-1614680 MsG0880041949.01.T01:CDS 35.0%
TCATTTCCGCATCTATTTGA+AGG + Chr8:1615640-1615659 MsG0880041949.01.T01:CDS 35.0%
TCTGATTTCGATTATGTTGG+CGG + Chr8:1613642-1613661 MsG0880041949.01.T01:CDS 35.0%
TCTTTGCCTTCAAATAGATG+CGG - Chr8:1615649-1615668 None:intergenic 35.0%
TTACAGTTGCAGTTACCTAA+CGG + Chr8:1614534-1614553 MsG0880041949.01.T01:intron 35.0%
TTCATTACAATGACAACTCC+AGG + Chr8:1616467-1616486 MsG0880041949.01.T01:intron 35.0%
TTCATTGGGGAAGATCATAT+TGG + Chr8:1614724-1614743 MsG0880041949.01.T01:CDS 35.0%
TTTAGCTAATGCAAACATCG+GGG + Chr8:1616783-1616802 MsG0880041949.01.T01:intron 35.0%
TTTCAGCGAGAAAATTTCGA+AGG - Chr8:1616869-1616888 None:intergenic 35.0%
! ATGACAGGTACATTTTACAC+GGG - Chr8:1614792-1614811 None:intergenic 35.0%
! CATGACAGGTACATTTTACA+CGG - Chr8:1614793-1614812 None:intergenic 35.0%
! GTAGTAGTTAGTTTACCGTT+AGG - Chr8:1614552-1614571 None:intergenic 35.0%
! GTATTTGCAAGAGGCTTTTA+AGG + Chr8:1613480-1613499 MsG0880041949.01.T01:CDS 35.0%
! TGCAGTTGTTATTGTCAAGT+GGG + Chr8:1615018-1615037 MsG0880041949.01.T01:intron 35.0%
! TTATGCGTTTTCTTTTGCTG+TGG + Chr8:1614837-1614856 MsG0880041949.01.T01:intron 35.0%
! TTTTCCTCCATAATCCGATA+TGG + Chr8:1615966-1615985 MsG0880041949.01.T01:intron 35.0%
!! ATCATTTTTCCCTGCATTAC+AGG + Chr8:1616661-1616680 MsG0880041949.01.T01:CDS 35.0%
!! CTTCTAGATTTCTAGCACTT+TGG + Chr8:1615310-1615329 MsG0880041949.01.T01:intron 35.0%
!! TATGCGTTTTCTTTTGCTGT+GGG + Chr8:1614838-1614857 MsG0880041949.01.T01:intron 35.0%
!!! GACATTGTCATGCTTTTTCT+CGG + Chr8:1616239-1616258 MsG0880041949.01.T01:intron 35.0%
!!! TGCTTTTGACTTACAGCAAT+TGG + Chr8:1616062-1616081 MsG0880041949.01.T01:intron 35.0%
!!! TTGGCATTTTTGGGTTCATT+GGG + Chr8:1614710-1614729 MsG0880041949.01.T01:CDS 35.0%
AAAGCGTGTGACTTATAACC+AGG + Chr8:1614684-1614703 MsG0880041949.01.T01:CDS 40.0%
AACATCGGGTTACATTGCAA+AGG - Chr8:1616185-1616204 None:intergenic 40.0%
ACACCGATATTTGACAACAC+TGG - Chr8:1615902-1615921 None:intergenic 40.0%
ACATCGGGTTACATTGCAAA+GGG - Chr8:1616184-1616203 None:intergenic 40.0%
AGTATGACCATGGTGATATC+AGG + Chr8:1615760-1615779 MsG0880041949.01.T01:intron 40.0%
CGAGATGTTGCTCCTAAAAT+CGG + Chr8:1616611-1616630 MsG0880041949.01.T01:CDS 40.0%
CGTGTAAAATGTACCTGTCA+TGG + Chr8:1614791-1614810 MsG0880041949.01.T01:intron 40.0%
CTGATTTCGATTATGTTGGC+GGG + Chr8:1613643-1613662 MsG0880041949.01.T01:CDS 40.0%
GCAAAGGATATCATTGCTTG+TGG + Chr8:1613592-1613611 MsG0880041949.01.T01:CDS 40.0%
GCTGCTAATATCTACTCAAG+CGG + Chr8:1616149-1616168 MsG0880041949.01.T01:intron 40.0%
GTGACTTATAACCAGGTTGT+TGG + Chr8:1614691-1614710 MsG0880041949.01.T01:CDS 40.0%
TATTGCAGAATTGGGATCAC+TGG - Chr8:1616992-1617011 None:intergenic 40.0%
TGTGAACTTGTATGCAATCG+CGG + Chr8:1615441-1615460 MsG0880041949.01.T01:intron 40.0%
TTAGCTAATGCAAACATCGG+GGG + Chr8:1616784-1616803 MsG0880041949.01.T01:intron 40.0%
! AAAAGCAGTGTTGTTGATGG+CGG - Chr8:1616049-1616068 None:intergenic 40.0%
! AACCAGGTTGTTGGCATTTT+TGG + Chr8:1614700-1614719 MsG0880041949.01.T01:CDS 40.0%
! ACCAGGTTGTTGGCATTTTT+GGG + Chr8:1614701-1614720 MsG0880041949.01.T01:CDS 40.0%
! CTGATGATGAGAAGTTCTTG+TGG + Chr8:1613524-1613543 MsG0880041949.01.T01:CDS 40.0%
! CTGTACCATGTTTCTGTAGA+AGG - Chr8:1614659-1614678 None:intergenic 40.0%
! GCAGTTGTTATTGTCAAGTG+GGG + Chr8:1615019-1615038 MsG0880041949.01.T01:intron 40.0%
! GTCAAAAGCAGTGTTGTTGA+TGG - Chr8:1616052-1616071 None:intergenic 40.0%
! GTGCAGTTGTTATTGTCAAG+TGG + Chr8:1615017-1615036 MsG0880041949.01.T01:intron 40.0%
! GTTACATTGCAAAGGGCATA+GGG - Chr8:1616177-1616196 None:intergenic 40.0%
! TGACAGGTACATTTTACACG+GGG - Chr8:1614791-1614810 None:intergenic 40.0%
!! CGGTTTTGTATGGATGAGTT+AGG + Chr8:1616436-1616455 MsG0880041949.01.T01:intron 40.0%
!!! AACCTCAGCTTTAGGTTTTC+AGG + Chr8:1615392-1615411 MsG0880041949.01.T01:intron 40.0%
!!! GGCTTGTTGTATCCGATTTT+AGG - Chr8:1616626-1616645 None:intergenic 40.0%
!!! GTTGGCATTTTTGGGTTCAT+TGG + Chr8:1614709-1614728 MsG0880041949.01.T01:CDS 40.0%
!!! TGGCATTTTTGGGTTCATTG+GGG + Chr8:1614711-1614730 MsG0880041949.01.T01:CDS 40.0%
AAAGCATGACAATGTCCGCA+TGG - Chr8:1616235-1616254 None:intergenic 45.0%
AATTCCTTGTGCAATCGACC+AGG + Chr8:1615684-1615703 MsG0880041949.01.T01:CDS 45.0%
ACATGGGAAGCCAACACTAA+CGG - Chr8:1614870-1614889 None:intergenic 45.0%
ACCCAAAAATGCCAACAACC+TGG - Chr8:1614705-1614724 None:intergenic 45.0%
AGAGCCAAAATCCTGCCATA+TGG - Chr8:1616009-1616028 None:intergenic 45.0%
ATATCGGCCAAAATTGGGCA+TGG - Chr8:1615939-1615958 None:intergenic 45.0%
CAGTGCCTTCTACAGAAACA+TGG + Chr8:1614651-1614670 MsG0880041949.01.T01:CDS 45.0%
CCACCATATCGGCCAAAATT+GGG - Chr8:1615944-1615963 None:intergenic 45.0%
CTCGGCATAAAATGCGATCT+TGG + Chr8:1616257-1616276 MsG0880041949.01.T01:intron 45.0%
GAGCCAAAATCCTGCCATAT+GGG - Chr8:1616008-1616027 None:intergenic 45.0%
GCTGTGTAGGTATTTGCAAG+AGG + Chr8:1613471-1613490 MsG0880041949.01.T01:CDS 45.0%
GGAGGAAAATCCCACCATAT+CGG - Chr8:1615955-1615974 None:intergenic 45.0%
GTGAACTTGTATGCAATCGC+GGG + Chr8:1615442-1615461 MsG0880041949.01.T01:intron 45.0%
GTTGAGCTGTGAGTTCTTGT+TGG + Chr8:1614949-1614968 MsG0880041949.01.T01:intron 45.0%
TCAGTGAGCTGTATAACCAG+AGG - Chr8:1613508-1613527 None:intergenic 45.0%
TCCTCCATAATCCGATATGG+CGG + Chr8:1615969-1615988 MsG0880041949.01.T01:intron 45.0%
TGCCTGAAAACCTAAAGCTG+AGG - Chr8:1615397-1615416 None:intergenic 45.0%
TGTTGGACAGCTCTTTCATC+TGG + Chr8:1614966-1614985 MsG0880041949.01.T01:intron 45.0%
! CATGTTTCTGTAGAAGGCAC+TGG - Chr8:1614653-1614672 None:intergenic 45.0%
! CATTTTACACGGGGAAGAGA+TGG - Chr8:1614782-1614801 None:intergenic 45.0%
! CTATCTGCCATGCCCAATTT+TGG + Chr8:1615929-1615948 MsG0880041949.01.T01:intron 45.0%
! GGTTACATTGCAAAGGGCAT+AGG - Chr8:1616178-1616197 None:intergenic 45.0%
!! ATGCCCAATTTTGGCCGATA+TGG + Chr8:1615938-1615957 MsG0880041949.01.T01:intron 45.0%
!! CCAATTTTGGCCGATATGGT+GGG + Chr8:1615942-1615961 MsG0880041949.01.T01:intron 45.0%
!! CCATACAAAACCGGCTTGTA+CGG - Chr8:1616429-1616448 None:intergenic 45.0%
!! GTTTTCTTTTGCTGTGGGCT+TGG + Chr8:1614843-1614862 MsG0880041949.01.T01:intron 45.0%
!! TCTGTAGAAGGCACTGGAAA+AGG - Chr8:1614647-1614666 None:intergenic 45.0%
!!! AGAGGCTTTTAAGGTTCCTC+TGG + Chr8:1613489-1613508 MsG0880041949.01.T01:CDS 45.0%
!!! AGTTAGTTTTCCACCTGTGC+AGG + Chr8:1614750-1614769 MsG0880041949.01.T01:CDS 45.0%
ACTTGCGAGGGAGAATGCAA+AGG + Chr8:1613576-1613595 MsG0880041949.01.T01:CDS 50.0%
CAAACCTGGTCGATTGCACA+AGG - Chr8:1615691-1615710 None:intergenic 50.0%
CATTCTCCCTCGCAAGTCTT+CGG - Chr8:1613573-1613592 None:intergenic 50.0%
CCATGGTGATATCAGGACTC+AGG + Chr8:1615767-1615786 MsG0880041949.01.T01:intron 50.0%
CCCACCATATCGGCCAAAAT+TGG - Chr8:1615945-1615964 None:intergenic 50.0%
CCTGAGTCCTGATATCACCA+TGG - Chr8:1615770-1615789 None:intergenic 50.0%
GGTGGGATTTAGTCCCACAT+CGG + Chr8:1616356-1616375 MsG0880041949.01.T01:intron 50.0%
TAAATCCCACCCGAGAGAGT+TGG - Chr8:1616347-1616366 None:intergenic 50.0%
TCCGCCATATCGGATTATGG+AGG - Chr8:1615973-1615992 None:intergenic 50.0%
! GTTTTCCACCTGTGCAGGTA+TGG + Chr8:1614755-1614774 MsG0880041949.01.T01:intron 50.0%
!! ACTGGTTTGCAGGGAGAAAC+AGG + Chr8:1616955-1616974 MsG0880041949.01.T01:intron 50.0%
!! CCCAATTTTGGCCGATATGG+TGG + Chr8:1615941-1615960 MsG0880041949.01.T01:intron 50.0%
!! CCGTACAAGCCGGTTTTGTA+TGG + Chr8:1616426-1616445 MsG0880041949.01.T01:intron 50.0%
!!! AGGATTTTGGCTCTCTGCCA+TGG + Chr8:1616015-1616034 MsG0880041949.01.T01:intron 50.0%
ATGGACCATACCTGCACAGG+TGG - Chr8:1614763-1614782 None:intergenic 55.0%
CTGTTAGCGGCCAACTCTCT+CGG + Chr8:1616334-1616353 MsG0880041949.01.T01:intron 55.0%
GAGATGGACCATACCTGCAC+AGG - Chr8:1614766-1614785 None:intergenic 55.0%
GCTTTGTGGCTCCGCCATAT+CGG - Chr8:1615983-1616002 None:intergenic 55.0%
GGCTCCGCCATATCGGATTA+TGG - Chr8:1615976-1615995 None:intergenic 55.0%
TGGGCTTGGACCGTTAGTGT+TGG + Chr8:1614857-1614876 MsG0880041949.01.T01:intron 55.0%
TGTTAGCGGCCAACTCTCTC+GGG + Chr8:1616335-1616354 MsG0880041949.01.T01:intron 55.0%
! CGGCCCATATGGCAGGATTT+TGG + Chr8:1616002-1616021 MsG0880041949.01.T01:intron 55.0%
! GATATGGCGGAGCCACAAAG+CGG + Chr8:1615982-1616001 MsG0880041949.01.T01:intron 55.0%
!! CAAAACCGGCTTGTACGGTG+AGG - Chr8:1616424-1616443 None:intergenic 55.0%
!! GCAGTGTTGTTGATGGCGGA+TGG - Chr8:1616045-1616064 None:intergenic 55.0%
AGGAGAGCCGAAGACTTGCG+AGG + Chr8:1613563-1613582 MsG0880041949.01.T01:CDS 60.0%
CACAAAGCGGCCCATATGGC+AGG + Chr8:1615995-1616014 MsG0880041949.01.T01:intron 60.0%
GAGCCACAAAGCGGCCCATA+TGG + Chr8:1615991-1616010 MsG0880041949.01.T01:intron 60.0%
GCACTCCTCACCGTACAAGC+CGG + Chr8:1616416-1616435 MsG0880041949.01.T01:intron 60.0%
GGAGAGCCGAAGACTTGCGA+GGG + Chr8:1613564-1613583 MsG0880041949.01.T01:CDS 60.0%
! CTGCCATATGGGCCGCTTTG+TGG - Chr8:1615997-1616016 None:intergenic 60.0%
!! TGATGGCGGATGGCAGTCCA+TGG - Chr8:1616035-1616054 None:intergenic 60.0%
AGCGGCCAACTCTCTCGGGT+GGG + Chr8:1616339-1616358 MsG0880041949.01.T01:intron 65.0%
TAGCGGCCAACTCTCTCGGG+TGG + Chr8:1616338-1616357 MsG0880041949.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr8 gene 1613469 1617059 1613469 ID=MsG0880041949.01;Name=MsG0880041949.01
Chr8 mRNA 1613469 1617059 1613469 ID=MsG0880041949.01.T01;Parent=MsG0880041949.01;Name=MsG0880041949.01.T01;_AED=0.46;_eAED=0.47;_QI=0|0.75|0.4|1|0.75|0.6|5|0|201
Chr8 exon 1613469 1613668 1613469 ID=MsG0880041949.01.T01:exon:1037;Parent=MsG0880041949.01.T01
Chr8 exon 1614639 1614771 1614639 ID=MsG0880041949.01.T01:exon:1038;Parent=MsG0880041949.01.T01
Chr8 exon 1615619 1615705 1615619 ID=MsG0880041949.01.T01:exon:1039;Parent=MsG0880041949.01.T01
Chr8 exon 1616590 1616682 1616590 ID=MsG0880041949.01.T01:exon:1040;Parent=MsG0880041949.01.T01
Chr8 exon 1616967 1617059 1616967 ID=MsG0880041949.01.T01:exon:1041;Parent=MsG0880041949.01.T01
Chr8 CDS 1613469 1613668 1613469 ID=MsG0880041949.01.T01:cds;Parent=MsG0880041949.01.T01
Chr8 CDS 1614639 1614771 1614639 ID=MsG0880041949.01.T01:cds;Parent=MsG0880041949.01.T01
Chr8 CDS 1615619 1615705 1615619 ID=MsG0880041949.01.T01:cds;Parent=MsG0880041949.01.T01
Chr8 CDS 1616590 1616682 1616590 ID=MsG0880041949.01.T01:cds;Parent=MsG0880041949.01.T01
Chr8 CDS 1616967 1617059 1616967 ID=MsG0880041949.01.T01:cds;Parent=MsG0880041949.01.T01
Gene Sequence

>MsG0880041949.01.T01

ATGCTGTGTAGGTATTTGCAAGAGGCTTTTAAGGTTCCTCTGGTTATACAGCTCACTGATGATGAGAAGTTCTTGTGGAAAAATCTTACTATAGAGGAGAGCCGAAGACTTGCGAGGGAGAATGCAAAGGATATCATTGCTTGTGGTTTTGACGTATCAAAGACATCATCTTTTCTGATTTCGATTATGTTGGCGGGTGAAAATTCCTTTTCCAGTGCCTTCTACAGAAACATGGTACAGATTGGAAAGCGTGTGACTTATAACCAGGTTGTTGGCATTTTTGGGTTCATTGGGGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAGGCAGCACCATCATTTCCTAGTTCATTTCCGCATCTATTTGAAGGCAAAGAGAATCTCCGTTGTTTAATTCCTTGTGCAATCGACCAGGATCCTTATTTTAGAATGACACGAGATGTTGCTCCTAAAATCGGATACAACAAGCCCGCTTTGATTGAATCATCATTTTTCCCTGCATTACAGGGAGAAACAGGAAAAATGTCTGCCAGTGATCCCAATTCTGCAATATATGTGACTGATTCTGCAAAAGATATAAAGAATAAGGTTTATTTCTGA
Protein sequence

>MsG0880041949.01.T01

MLCRYLQEAFKVPLVIQLTDDEKFLWKNLTIEESRRLARENAKDIIACGFDVSKTSSFLISIMLAGENSFSSAFYRNMVQIGKRVTYNQVVGIFGFIGEDHIGKVSFPPVQAAPSFPSSFPHLFEGKENLRCLIPCAIDQDPYFRMTRDVAPKIGYNKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKDIKNKVYF*