AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004991.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004991.01.T02 MTR_1g090773 63.942 208 40 5 1 206 1 175 1.36e-72 225
MsG0180004991.01.T02 MTR_1g090773 46.087 230 74 6 49 242 116 331 2.87e-44 152
MsG0180004991.01.T02 MTR_1g090773 47.391 230 74 6 49 242 30 248 1.96e-47 158
MsG0180004991.01.T02 MTR_1g090773 60.194 103 25 4 106 206 1 89 1.74e-25 101
MsG0180004991.01.T01 MTR_1g090773 63.942 208 40 5 1 206 1 175 1.36e-72 225
MsG0180004991.01.T01 MTR_1g090773 46.087 230 74 6 49 242 116 331 2.87e-44 152
MsG0180004991.01.T01 MTR_1g090773 47.391 230 74 6 49 242 30 248 1.96e-47 158
MsG0180004991.01.T01 MTR_1g090773 60.194 103 25 4 106 206 1 89 1.74e-25 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004991.01.T02 AT5G04430 57.055 163 54 4 49 209 29 177 2.54e-52 172
MsG0180004991.01.T02 AT5G04430 42.439 205 87 5 49 237 115 304 4.53e-38 135
MsG0180004991.01.T02 AT5G04430 56.790 162 56 3 49 209 29 177 6.10e-52 172
MsG0180004991.01.T02 AT5G04430 38.938 226 86 5 49 237 115 325 3.75e-36 131
MsG0180004991.01.T01 AT5G04430 57.055 163 54 4 49 209 29 177 2.54e-52 172
MsG0180004991.01.T01 AT5G04430 42.439 205 87 5 49 237 115 304 4.53e-38 135
MsG0180004991.01.T01 AT5G04430 56.790 162 56 3 49 209 29 177 6.10e-52 172
MsG0180004991.01.T01 AT5G04430 38.938 226 86 5 49 237 115 325 3.75e-36 131

Find 9 sgRNAs with CRISPR-Local

Find 426 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCCGTAGTAAGGCAATA+AGG 0.339483 1:-85349350 MsG0180004991.01.T02:intron
GAGAAGAGAGAAAGAGAAGT+TGG 0.394681 1:+85349161 None:intergenic
AATATGCTGCTGCGTGTGTG+TGG 0.490607 1:+85349259 None:intergenic
AAACAAACGTGACGTTGCGG+TGG 0.518492 1:-85349221 MsG0180004991.01.T01:five_prime_UTR
TTTACCTTATTGCCTTACTA+CGG 0.553783 1:+85349346 None:intergenic
AACAAACGTGACGTTGCGGT+GGG 0.561139 1:-85349220 MsG0180004991.01.T01:five_prime_UTR
AGAAAGAGAAGTTGGTGCTG+CGG 0.567333 1:+85349169 None:intergenic
ATATGCTGCTGCGTGTGTGT+GGG 0.579780 1:+85349260 None:intergenic
ACAAAACAAACGTGACGTTG+CGG 0.619882 1:-85349224 MsG0180004991.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAAAATAAAAATTGA+AGG + Chr1:85348046-85348065 None:intergenic 10.0%
!! TATATAAGTATATAAATCAT+AGG + Chr1:85347368-85347387 None:intergenic 10.0%
!! TATTAATTTCAATTCTAATT+TGG + Chr1:85343292-85343311 None:intergenic 10.0%
!!! AGTTTATTTTTTATTCTAAA+GGG - Chr1:85346709-85346728 MsG0180004991.01.T01:CDS 10.0%
!!! CTAACAAATAATTTTTAAAT+TGG - Chr1:85347087-85347106 MsG0180004991.01.T01:intron 10.0%
!!! CTTCAATTTTTATTTTTTTT+TGG - Chr1:85348044-85348063 MsG0180004991.01.T01:intron 10.0%
!!! TATTTTAAGAATGTTTTTTT+AGG - Chr1:85343788-85343807 MsG0180004991.01.T01:intron 10.0%
!! AATTTCATAAATATGGTAAA+CGG + Chr1:85345017-85345036 None:intergenic 15.0%
!! ACATAAAAAACTGTTTAATT+TGG - Chr1:85348009-85348028 MsG0180004991.01.T01:intron 15.0%
!! CAATACTAATTTCATAAATA+TGG + Chr1:85345024-85345043 None:intergenic 15.0%
!! GATATACAATGATATAATTT+CGG - Chr1:85348415-85348434 MsG0180004991.01.T01:intron 15.0%
!! GTATTATTTATTAATACATC+AGG - Chr1:85345832-85345851 MsG0180004991.01.T01:intron 15.0%
!! TTAAAAAAAATGAAGTAAGT+GGG + Chr1:85347900-85347919 None:intergenic 15.0%
!! TTTAAAAAAAATGAAGTAAG+TGG + Chr1:85347901-85347920 None:intergenic 15.0%
!!! AAAAATTATTTGTTAGTGTT+AGG + Chr1:85347083-85347102 None:intergenic 15.0%
!!! AAAATTATTTGTTAGTGTTA+GGG + Chr1:85347082-85347101 None:intergenic 15.0%
!!! AGTTTTTCTTACTATATTTT+AGG - Chr1:85347196-85347215 MsG0180004991.01.T01:intron 15.0%
!!! ATTTGTTTTGTTTTGTTTTA+TGG - Chr1:85343728-85343747 MsG0180004991.01.T01:intron 15.0%
!!! CAGTTTATTTTTTATTCTAA+AGG - Chr1:85346708-85346727 MsG0180004991.01.T01:CDS 15.0%
!!! TATTTTTTTTTGGAGTTTAT+GGG - Chr1:85348054-85348073 MsG0180004991.01.T01:intron 15.0%
!!! TGAAATTTTAAGTTTTATGT+CGG - Chr1:85344282-85344301 MsG0180004991.01.T01:intron 15.0%
!!! TTAATATTTTTTTTCTCCAA+TGG - Chr1:85344053-85344072 MsG0180004991.01.T01:CDS 15.0%
!!! TTATTTTTTTTTGGAGTTTA+TGG - Chr1:85348053-85348072 MsG0180004991.01.T01:intron 15.0%
!!! TTGTTTGAAATTATCAAATT+TGG - Chr1:85343578-85343597 MsG0180004991.01.T01:intron 15.0%
!!! TTTGTTTTGTTTTGTTTTAT+GGG - Chr1:85343729-85343748 MsG0180004991.01.T01:intron 15.0%
!! AAAATTAAATAACGCTGAAT+CGG - Chr1:85344125-85344144 MsG0180004991.01.T01:intron 20.0%
!! AAAGAAAACAAAAATCACAT+CGG + Chr1:85342904-85342923 None:intergenic 20.0%
!! AAATGTATTCTATGAATCAT+GGG + Chr1:85345983-85346002 None:intergenic 20.0%
!! AACTAATTGAATCAATATCA+TGG + Chr1:85344791-85344810 None:intergenic 20.0%
!! AAGGTAAATATGATTAAGAT+GGG - Chr1:85345935-85345954 MsG0180004991.01.T01:intron 20.0%
!! AGTATTAGCGAAATAAAAAA+TGG + Chr1:85345541-85345560 None:intergenic 20.0%
!! ATGATTATAGAAACAAAATG+TGG - Chr1:85346748-85346767 MsG0180004991.01.T01:intron 20.0%
!! ATGTATTGCAAATATTTCAA+AGG + Chr1:85346993-85347012 None:intergenic 20.0%
!! ATTACTTGATTTAATTCTTC+TGG - Chr1:85348509-85348528 MsG0180004991.01.T01:intron 20.0%
!! ATTCAAAAGATAAGATCTAT+TGG - Chr1:85349007-85349026 MsG0180004991.01.T01:five_prime_UTR 20.0%
!! ATTTCATAAATATGGTAAAC+GGG + Chr1:85345016-85345035 None:intergenic 20.0%
!! CAATATCTAATTAGCTAAAA+GGG - Chr1:85346842-85346861 MsG0180004991.01.T01:intron 20.0%
!! CAGATTAATCAAATACAAAA+TGG + Chr1:85349330-85349349 None:intergenic 20.0%
!! GAAATTGTAAAACAACAAAT+AGG + Chr1:85347251-85347270 None:intergenic 20.0%
!! TAAAAAAAATGAAGTAAGTG+GGG + Chr1:85347899-85347918 None:intergenic 20.0%
!! TAAGGTAAATATGATTAAGA+TGG - Chr1:85345934-85345953 MsG0180004991.01.T01:intron 20.0%
!! TGAAAACATCTTAATATCTA+AGG + Chr1:85348388-85348407 None:intergenic 20.0%
!! TTACTTGATTTAATTCTTCT+GGG - Chr1:85348510-85348529 MsG0180004991.01.T01:intron 20.0%
!! TTCATTCATAAATTCAACAT+TGG + Chr1:85347398-85347417 None:intergenic 20.0%
!! TTGCTTATAAATAACTAACT+TGG - Chr1:85347646-85347665 MsG0180004991.01.T01:intron 20.0%
!! TTTGTATTTGATTAATCTGA+TGG - Chr1:85349331-85349350 MsG0180004991.01.T02:intron 20.0%
!!! AAAGTTTTTAAGGTTTAATC+CGG - Chr1:85343351-85343370 MsG0180004991.01.T01:intron 20.0%
!!! AATAGATCTTATCTTTTGAA+TGG + Chr1:85349008-85349027 None:intergenic 20.0%
!!! AGCATCTATTTTTAAAATGA+GGG - Chr1:85346269-85346288 MsG0180004991.01.T01:intron 20.0%
!!! ATAGATCTTATCTTTTGAAT+GGG + Chr1:85349007-85349026 None:intergenic 20.0%
!!! ATAGTTCTAAATACTACATT+TGG + Chr1:85349052-85349071 None:intergenic 20.0%
!!! ATTAAGATGTTTTCAAGTTT+TGG - Chr1:85348393-85348412 MsG0180004991.01.T01:intron 20.0%
!!! ATTTTTATGGTAGTAAATGA+TGG - Chr1:85346300-85346319 MsG0180004991.01.T01:intron 20.0%
!!! TTTAATGTTATTTCAGAGAT+GGG - Chr1:85345247-85345266 MsG0180004991.01.T01:intron 20.0%
!!! TTTTAATGTTATTTCAGAGA+TGG - Chr1:85345246-85345265 MsG0180004991.01.T01:intron 20.0%
!!! TTTTTTTATCCTGTTTCTTA+CGG - Chr1:85343098-85343117 MsG0180004991.01.T01:intron 20.0%
! AAAATAAGCATGTTATTGTC+AGG - Chr1:85345187-85345206 MsG0180004991.01.T01:intron 25.0%
! AAAATTGTGATTCATTTCAG+TGG - Chr1:85342275-85342294 MsG0180004991.01.T01:three_prime_UTR 25.0%
! AAGAATATCGTATATTAGTC+AGG - Chr1:85347580-85347599 MsG0180004991.01.T01:intron 25.0%
! AAGCTAAACTAACAATATGT+TGG + Chr1:85345739-85345758 None:intergenic 25.0%
! AAGTGAGAAAAAAGTGAATA+CGG + Chr1:85342479-85342498 None:intergenic 25.0%
! ACAAAATGGTAGTAAATCAA+TGG + Chr1:85349316-85349335 None:intergenic 25.0%
! ACTTATATGTCTATTACCAA+TGG - Chr1:85347273-85347292 MsG0180004991.01.T01:intron 25.0%
! AGAAAATGAATTGTACCTAA+TGG + Chr1:85344973-85344992 None:intergenic 25.0%
! AGAAATTATTAGTGATGAAC+AGG + Chr1:85346893-85346912 None:intergenic 25.0%
! AGCTAAACTAACAATATGTT+GGG + Chr1:85345738-85345757 None:intergenic 25.0%
! AGTTGCTAATATATATAGAG+TGG - Chr1:85349093-85349112 MsG0180004991.01.T01:intron 25.0%
! ATAAAAAATGTCTTGCATTG+CGG - Chr1:85344817-85344836 MsG0180004991.01.T01:intron 25.0%
! ATCCAGAAATTTCTATAAGT+GGG + Chr1:85348657-85348676 None:intergenic 25.0%
! ATCTGTCACTAATATACTTT+GGG - Chr1:85348904-85348923 MsG0180004991.01.T01:CDS 25.0%
! ATTGTAAAACAACAAATAGG+TGG + Chr1:85347248-85347267 None:intergenic 25.0%
! CACATTTGTGTGATTAATTT+AGG - Chr1:85343653-85343672 MsG0180004991.01.T01:intron 25.0%
! CCATCATTTAATCTTGTTAA+TGG - Chr1:85346539-85346558 MsG0180004991.01.T01:intron 25.0%
! CCATTAACAAGATTAAATGA+TGG + Chr1:85346542-85346561 None:intergenic 25.0%
! CTAATAATTTCTGACATGAA+TGG - Chr1:85346901-85346920 MsG0180004991.01.T01:CDS 25.0%
! GAAATGTATTCTATGAATCA+TGG + Chr1:85345984-85346003 None:intergenic 25.0%
! GCAATATCTAATTAGCTAAA+AGG - Chr1:85346841-85346860 MsG0180004991.01.T01:intron 25.0%
! GTCATTAATAAACTTCATGT+GGG + Chr1:85347981-85348000 None:intergenic 25.0%
! TAGGAAATTATTATTACACG+AGG + Chr1:85347349-85347368 None:intergenic 25.0%
! TATCCATGCTGTTAAATAAT+TGG - Chr1:85343877-85343896 MsG0180004991.01.T01:CDS 25.0%
! TATCTGTCACTAATATACTT+TGG - Chr1:85348903-85348922 MsG0180004991.01.T01:CDS 25.0%
! TATTTAACAGCATGGATAAT+CGG + Chr1:85343875-85343894 None:intergenic 25.0%
! TCAAAAATTCATCTCTCTTA+CGG + Chr1:85348261-85348280 None:intergenic 25.0%
! TCATTAATAAACTTCATGTG+GGG + Chr1:85347980-85347999 None:intergenic 25.0%
! TCGCTAATACTTATATACTT+TGG - Chr1:85345550-85345569 MsG0180004991.01.T01:intron 25.0%
! TGACTTATATCTTCAATTAC+TGG - Chr1:85349144-85349163 MsG0180004991.01.T01:intron 25.0%
! TTATTCACTAAATTCACCAT+TGG + Chr1:85347292-85347311 None:intergenic 25.0%
! TTTATAAGTAGCAATGACTA+AGG + Chr1:85346639-85346658 None:intergenic 25.0%
! TTTCCTTCACATCAATTAAT+TGG + Chr1:85343047-85343066 None:intergenic 25.0%
!! ATCAGTAGTGTTATTAATAG+CGG + Chr1:85344459-85344478 None:intergenic 25.0%
!! ATTTCGGTAATCACTTATTT+TGG - Chr1:85348431-85348450 MsG0180004991.01.T01:intron 25.0%
!! CAACTTTTTACATGCATTTT+AGG - Chr1:85346383-85346402 MsG0180004991.01.T01:intron 25.0%
!! CTTAATGTCATTTGAACTTT+AGG - Chr1:85346057-85346076 MsG0180004991.01.T01:intron 25.0%
!! GATTTTATGTTGTGAAAGAT+TGG - Chr1:85343217-85343236 MsG0180004991.01.T01:intron 25.0%
!! GTTTATTGGTTGTCATTATT+CGG - Chr1:85349287-85349306 MsG0180004991.01.T01:five_prime_UTR 25.0%
!! TACAGCAATTTACTCATTTT+TGG - Chr1:85346245-85346264 MsG0180004991.01.T01:intron 25.0%
!! TCTTTGATGGAAAGTTTTTA+AGG - Chr1:85343341-85343360 MsG0180004991.01.T01:intron 25.0%
!! TTATCATGTTTTGTCTTGTA+TGG - Chr1:85346333-85346352 MsG0180004991.01.T01:intron 25.0%
!! TTTCTATTTCCTTGTTATAC+AGG - Chr1:85348694-85348713 MsG0180004991.01.T01:intron 25.0%
!! TTTTTAAATTGGTGTAACTG+TGG - Chr1:85347098-85347117 MsG0180004991.01.T01:intron 25.0%
!!! AAACAGTTTTTTATGTGATG+TGG + Chr1:85348005-85348024 None:intergenic 25.0%
!!! AACAGTTTTTTATGTGATGT+GGG + Chr1:85348004-85348023 None:intergenic 25.0%
!!! ACAGCAATTTACTCATTTTT+GGG - Chr1:85346246-85346265 MsG0180004991.01.T01:intron 25.0%
!!! ATTTGATAGCAGATGTTTTA+CGG - Chr1:85347831-85347850 MsG0180004991.01.T01:intron 25.0%
!!! ATTTTCTTTGTCAAGTTGTA+GGG - Chr1:85344986-85345005 MsG0180004991.01.T01:intron 25.0%
!!! GAATATGTTTTGATTTCAAG+AGG - Chr1:85345088-85345107 MsG0180004991.01.T01:intron 25.0%
!!! GAGCATCTATTTTTAAAATG+AGG - Chr1:85346268-85346287 MsG0180004991.01.T01:intron 25.0%
!!! GCATGTTATTTCATGTTTAT+TGG - Chr1:85349273-85349292 MsG0180004991.01.T01:five_prime_UTR 25.0%
!!! TCATACATTTGCTGAATTTT+GGG - Chr1:85348863-85348882 MsG0180004991.01.T01:intron 25.0%
!!! TCATATTTGAAAGTGTTGTA+TGG + Chr1:85348341-85348360 None:intergenic 25.0%
!!! TTAATGTTATTTCAGAGATG+GGG - Chr1:85345248-85345267 MsG0180004991.01.T01:intron 25.0%
!!! TTAGGATTTGTTACTACATT+TGG - Chr1:85347214-85347233 MsG0180004991.01.T01:intron 25.0%
!!! TTGTTTTTTTCTGTTGAGTT+TGG - Chr1:85343126-85343145 MsG0180004991.01.T01:intron 25.0%
AAGATAAAGATATCAGACAG+AGG - Chr1:85347700-85347719 MsG0180004991.01.T01:intron 30.0%
ATACTAACATGTTGGATGAT+TGG - Chr1:85346924-85346943 MsG0180004991.01.T01:CDS 30.0%
ATGAATGGATACTAACATGT+TGG - Chr1:85346916-85346935 MsG0180004991.01.T01:CDS 30.0%
ATTCCCAAACACAAATCAAA+AGG + Chr1:85345072-85345091 None:intergenic 30.0%
CATGATAGTTTAATGTCCAT+TGG + Chr1:85344072-85344091 None:intergenic 30.0%
CCATAGTAACTATTATCTTG+AGG + Chr1:85345352-85345371 None:intergenic 30.0%
CCTCAAGATAATAGTTACTA+TGG - Chr1:85345349-85345368 MsG0180004991.01.T01:intron 30.0%
GATCCAGAAATTTCTATAAG+TGG + Chr1:85348658-85348677 None:intergenic 30.0%
GCGCAATAATATTGTATTCT+AGG - Chr1:85348535-85348554 MsG0180004991.01.T01:intron 30.0%
GGAATTAAGAATTCACTTGT+GGG - Chr1:85349213-85349232 MsG0180004991.01.T01:five_prime_UTR 30.0%
GGTCATTAATAAACTTCATG+TGG + Chr1:85347982-85348001 None:intergenic 30.0%
GTACCAATTATTTAACAGCA+TGG + Chr1:85343883-85343902 None:intergenic 30.0%
GTATTTATTTAGCGCATGTT+TGG - Chr1:85343378-85343397 MsG0180004991.01.T01:intron 30.0%
GTGAAAGATTGGAGTTAATT+TGG - Chr1:85343228-85343247 MsG0180004991.01.T01:intron 30.0%
GTTACTATGGACAAAATGAT+AGG - Chr1:85345362-85345381 MsG0180004991.01.T01:intron 30.0%
TAAAAAATGTCTTGCATTGC+GGG - Chr1:85344818-85344837 MsG0180004991.01.T01:intron 30.0%
TATTTGCAGTGATAGCAATT+GGG - Chr1:85349192-85349211 MsG0180004991.01.T01:five_prime_UTR 30.0%
TCAAAGGCAAAGAATTCATA+AGG + Chr1:85345285-85345304 None:intergenic 30.0%
TCCAGAAATTTCTATAAGTG+GGG + Chr1:85348656-85348675 None:intergenic 30.0%
TGAACACAAATCAATGCTTA+TGG + Chr1:85343152-85343171 None:intergenic 30.0%
TTAATACATCAGGACAGTAA+TGG - Chr1:85345842-85345861 MsG0180004991.01.T01:intron 30.0%
TTAATATTCCTGTGTATCTG+TGG - Chr1:85345911-85345930 MsG0180004991.01.T01:intron 30.0%
TTATACCATGCAAAACCATT+AGG + Chr1:85347621-85347640 None:intergenic 30.0%
TTATGCAAGAATTTGATTGC+TGG + Chr1:85347808-85347827 None:intergenic 30.0%
TTATTTGCAGTGATAGCAAT+TGG - Chr1:85349191-85349210 MsG0180004991.01.T01:five_prime_UTR 30.0%
TTTACCTTATTGCCTTACTA+CGG + Chr1:85342258-85342277 None:intergenic 30.0%
! AATATATCACTGCATTTTCC+AGG + Chr1:85343772-85343791 None:intergenic 30.0%
! ACTGCAACTTTTATCTTTGA+TGG - Chr1:85343328-85343347 MsG0180004991.01.T01:intron 30.0%
! ACTTTAGGAATAATAGTGCA+AGG - Chr1:85346072-85346091 MsG0180004991.01.T01:intron 30.0%
! CAAGATTAAATGATGGAATG+AGG + Chr1:85346535-85346554 None:intergenic 30.0%
! CATAGATACGATGGTTTTTA+AGG - Chr1:85346960-85346979 MsG0180004991.01.T01:CDS 30.0%
! CATTTCGTTTTCACTAGATA+AGG - Chr1:85345998-85346017 MsG0180004991.01.T01:intron 30.0%
! TCTTTATTTCAACTGCTTTG+TGG - Chr1:85344360-85344379 MsG0180004991.01.T01:intron 30.0%
! TTGCTTTCTTTTTAATGAGC+CGG - Chr1:85345786-85345805 MsG0180004991.01.T01:intron 30.0%
!! AGTGTCATTTATTTGTTCCA+CGG - Chr1:85345503-85345522 MsG0180004991.01.T01:intron 30.0%
!! CATTTTCTTTGTCAAGTTGT+AGG - Chr1:85344985-85345004 MsG0180004991.01.T01:intron 30.0%
!! CTCATACATTTGCTGAATTT+TGG - Chr1:85348862-85348881 MsG0180004991.01.T01:intron 30.0%
!! GCTTTATATGATTAGCTTCA+CGG - Chr1:85344857-85344876 MsG0180004991.01.T01:intron 30.0%
!! TTATATGAATGCTGGTTCTT+TGG - Chr1:85345118-85345137 MsG0180004991.01.T01:intron 30.0%
!! TTTGATAGCAGATGTTTTAC+GGG - Chr1:85347832-85347851 MsG0180004991.01.T01:intron 30.0%
!!! ACAGTTTTTTATGTGATGTG+GGG + Chr1:85348003-85348022 None:intergenic 30.0%
!!! ACATGCTTATTTTTAGTTGC+AGG + Chr1:85345180-85345199 None:intergenic 30.0%
!!! ATGCCTTTTGATTTGTGTTT+GGG - Chr1:85345066-85345085 MsG0180004991.01.T01:intron 30.0%
!!! ATGCTTATTTTTAGTTGCAG+GGG + Chr1:85345178-85345197 None:intergenic 30.0%
!!! CATGCTTATTTTTAGTTGCA+GGG + Chr1:85345179-85345198 None:intergenic 30.0%
!!! TATGCCTTTTGATTTGTGTT+TGG - Chr1:85345065-85345084 MsG0180004991.01.T01:intron 30.0%
!!! TATTTTTCGTAGTGGATGAA+TGG - Chr1:85343491-85343510 MsG0180004991.01.T01:intron 30.0%
!!! TGCGATTTTATTTTTCGTAG+TGG - Chr1:85343483-85343502 MsG0180004991.01.T01:intron 30.0%
!!! TTTTAAGGTTTAATCCGGTA+TGG - Chr1:85343356-85343375 MsG0180004991.01.T01:intron 30.0%
AAAAATCACATCGGCATAAC+AGG + Chr1:85342895-85342914 None:intergenic 35.0%
AACTCCAATCAACTAATGCA+AGG + Chr1:85348199-85348218 None:intergenic 35.0%
AATTACAGACCTAATGGAAC+TGG - Chr1:85346483-85346502 MsG0180004991.01.T01:intron 35.0%
ACAATCAGAAGAAAGACAGA+TGG + Chr1:85345814-85345833 None:intergenic 35.0%
ACCCCACTTATAGAAATTTC+TGG - Chr1:85348652-85348671 MsG0180004991.01.T01:intron 35.0%
AGAGAGAAAACAGATCAGAT+CGG + Chr1:85342752-85342771 None:intergenic 35.0%
AGAGAGTTACATAGCAGTAA+TGG + Chr1:85342516-85342535 None:intergenic 35.0%
AGTGTTCACAGAACTTCATA+TGG - Chr1:85346800-85346819 MsG0180004991.01.T01:intron 35.0%
AGTTCTCCGTTTACATATTC+TGG - Chr1:85345478-85345497 MsG0180004991.01.T01:intron 35.0%
ATACAGGAAGTTACCATAAC+AGG - Chr1:85348710-85348729 MsG0180004991.01.T01:intron 35.0%
ATATGTAAACGGAGAACTCA+TGG + Chr1:85345476-85345495 None:intergenic 35.0%
ATGCGATGAAAAATAACAGC+CGG + Chr1:85345213-85345232 None:intergenic 35.0%
ATTCATTATTGCGTGACAAC+TGG + Chr1:85344663-85344682 None:intergenic 35.0%
CAATCAGAAGAAAGACAGAT+GGG + Chr1:85345813-85345832 None:intergenic 35.0%
CACTGACCAGAATATGTAAA+CGG + Chr1:85345487-85345506 None:intergenic 35.0%
CATGTGCAAAAAACACAAAC+TGG + Chr1:85346870-85346889 None:intergenic 35.0%
CCATATATAAACAGGGCTAA+TGG + Chr1:85345636-85345655 None:intergenic 35.0%
CCATTAGCCCTGTTTATATA+TGG - Chr1:85345633-85345652 MsG0180004991.01.T01:intron 35.0%
CTATACCGCTATTATGTATC+GGG - Chr1:85343910-85343929 MsG0180004991.01.T01:CDS 35.0%
CTCATGGAATGTGAATAATG+AGG + Chr1:85345460-85345479 None:intergenic 35.0%
CTTGATTTAATTCTTCTGGG+TGG - Chr1:85348513-85348532 MsG0180004991.01.T01:intron 35.0%
CTTGTCTACTGTTAGATTCT+TGG - Chr1:85348822-85348841 MsG0180004991.01.T01:intron 35.0%
GAAATCCCGATACATAATAG+CGG + Chr1:85343918-85343937 None:intergenic 35.0%
GAGAAGAAATCCTGTAAGAA+CGG + Chr1:85348982-85349001 None:intergenic 35.0%
GAGCCAATTAATTGATGTGA+AGG - Chr1:85343041-85343060 MsG0180004991.01.T01:intron 35.0%
GATACATAATAGCGGTATAG+CGG + Chr1:85343910-85343929 None:intergenic 35.0%
GATCACCAAAAATCCACTAT+GGG + Chr1:85344420-85344439 None:intergenic 35.0%
GCGCTAAATAAATACCATAC+CGG + Chr1:85343373-85343392 None:intergenic 35.0%
GCTATACCGCTATTATGTAT+CGG - Chr1:85343909-85343928 MsG0180004991.01.T01:CDS 35.0%
GGATCCAAGTAGTAAGAAAT+GGG - Chr1:85347864-85347883 MsG0180004991.01.T01:intron 35.0%
GGGAATTAAGAATTCACTTG+TGG - Chr1:85349212-85349231 MsG0180004991.01.T01:five_prime_UTR 35.0%
GGTTCTTGTGTGGAATAATT+GGG - Chr1:85344935-85344954 MsG0180004991.01.T01:intron 35.0%
GTCGTCTTGAAGAATAACAA+TGG - Chr1:85342628-85342647 MsG0180004991.01.T01:three_prime_UTR 35.0%
GTTGTCTCTTATATGAATGC+TGG - Chr1:85345110-85345129 MsG0180004991.01.T01:intron 35.0%
TAACATGTTGGATGATTGGA+AGG - Chr1:85346928-85346947 MsG0180004991.01.T01:CDS 35.0%
TAATCTGATGGCTTGATCAA+TGG - Chr1:85349343-85349362 MsG0180004991.01.T02:intron 35.0%
TACTCTTTCAGAACAACAAC+CGG + Chr1:85346139-85346158 None:intergenic 35.0%
TAGAAAAGCCAACGTATGTT+AGG - Chr1:85344548-85344567 MsG0180004991.01.T01:intron 35.0%
TATATAAACAGGGCTAATGG+AGG + Chr1:85345633-85345652 None:intergenic 35.0%
TATCGTATATTAGTCAGGTC+AGG - Chr1:85347585-85347604 MsG0180004991.01.T01:intron 35.0%
TATGAAGTGAAGAGAGAAAG+TGG + Chr1:85344230-85344249 None:intergenic 35.0%
TATTCCACACAAGAACCATT+AGG + Chr1:85344932-85344951 None:intergenic 35.0%
TCAATGAATGACCTGATCAA+AGG + Chr1:85345301-85345320 None:intergenic 35.0%
TCGTTATACTTGAGGGATAA+GGG + Chr1:85347782-85347801 None:intergenic 35.0%
TCTTAGACATTTCACATGAC+AGG - Chr1:85347141-85347160 MsG0180004991.01.T01:intron 35.0%
TGAATTCTTTGCCTTTGATC+AGG - Chr1:85345287-85345306 MsG0180004991.01.T01:intron 35.0%
TGAGAAAAAAGTGAATACGG+CGG + Chr1:85342476-85342495 None:intergenic 35.0%
TGGGAGATCTTTATTGTAGT+GGG - Chr1:85348923-85348942 MsG0180004991.01.T01:CDS 35.0%
TGGTAACTTCCTGTATAACA+AGG + Chr1:85348706-85348725 None:intergenic 35.0%
TGGTTCTTGTGTGGAATAAT+TGG - Chr1:85344934-85344953 MsG0180004991.01.T01:intron 35.0%
TTCATTGAAGAATCTCAAGC+TGG - Chr1:85345313-85345332 MsG0180004991.01.T01:intron 35.0%
TTCGTTATACTTGAGGGATA+AGG + Chr1:85347783-85347802 None:intergenic 35.0%
TTGGGAGATCTTTATTGTAG+TGG - Chr1:85348922-85348941 MsG0180004991.01.T01:CDS 35.0%
TTTGCCTTGCATTAGTTGAT+TGG - Chr1:85348192-85348211 MsG0180004991.01.T01:intron 35.0%
! ACATATCTGGAACAACTGAT+AGG - Chr1:85347728-85347747 MsG0180004991.01.T01:intron 35.0%
! ATCTGATCTGTTTTCTCTCT+CGG - Chr1:85342752-85342771 MsG0180004991.01.T01:three_prime_UTR 35.0%
! ATCTTTATTGTAGTGGGAGA+GGG - Chr1:85348929-85348948 MsG0180004991.01.T01:CDS 35.0%
! ATTTTCAACGTGTAACCAAC+AGG - Chr1:85343174-85343193 MsG0180004991.01.T01:intron 35.0%
! GATGGAAGCACATATGTATA+TGG + Chr1:85346436-85346455 None:intergenic 35.0%
! GATTTGGTATTACGCCAAAA+AGG - Chr1:85346192-85346211 MsG0180004991.01.T01:intron 35.0%
! TAAGCTTTTGTGTTAGTGAG+AGG - Chr1:85343609-85343628 MsG0180004991.01.T01:intron 35.0%
! TGCTTTCTTTTTAATGAGCC+GGG - Chr1:85345787-85345806 MsG0180004991.01.T01:intron 35.0%
! TTTTCAACGTGTAACCAACA+GGG - Chr1:85343175-85343194 MsG0180004991.01.T01:intron 35.0%
! TTTTTGCATATCGGAGATAG+CGG - Chr1:85344000-85344019 MsG0180004991.01.T01:intron 35.0%
!! AAAGAGTTTTAGTGATCGAG+AGG + Chr1:85344200-85344219 None:intergenic 35.0%
!! ACTGATTTTCAGTCACAATC+TGG - Chr1:85344628-85344647 MsG0180004991.01.T01:intron 35.0%
!! ATACTTTGGAGCACCTAATA+TGG - Chr1:85345564-85345583 MsG0180004991.01.T01:intron 35.0%
!! ATTTTAGGTGCTTATGTCTC+GGG - Chr1:85346398-85346417 MsG0180004991.01.T01:intron 35.0%
!! CATTTTAGGTGCTTATGTCT+CGG - Chr1:85346397-85346416 MsG0180004991.01.T01:intron 35.0%
!! TTGTTCTGAAAGAGTAAGAG+TGG - Chr1:85346143-85346162 MsG0180004991.01.T01:intron 35.0%
!!! ATGAGTCTCACTTTGGTTTT+TGG + Chr1:85344905-85344924 None:intergenic 35.0%
!!! CTATTCCCATAGTGGATTTT+TGG - Chr1:85344412-85344431 MsG0180004991.01.T01:intron 35.0%
!!! CTGTTTTTTCTTCCGTAGTA+AGG - Chr1:85342243-85342262 MsG0180004991.01.T01:three_prime_UTR 35.0%
!!! GAGGGTATCGTCTATTTTTA+TGG - Chr1:85346287-85346306 MsG0180004991.01.T01:intron 35.0%
AAAGAAGACTGTAATCCCAG+GGG + Chr1:85345660-85345679 None:intergenic 40.0%
AACCACTGATCGGATTATCA+TGG - Chr1:85344693-85344712 MsG0180004991.01.T01:intron 40.0%
AACTTTGCTCCAGTTCCATT+AGG + Chr1:85346495-85346514 None:intergenic 40.0%
AAGGTGATGCATAGATACGA+TGG - Chr1:85346951-85346970 MsG0180004991.01.T01:CDS 40.0%
AATGGACAAGAGATATTCCG+TGG + Chr1:85345523-85345542 None:intergenic 40.0%
ACAAAACAAACGTGACGTTG+CGG - Chr1:85342377-85342396 MsG0180004991.01.T01:three_prime_UTR 40.0%
ACCAGAAACCTAACATACGT+TGG + Chr1:85344559-85344578 None:intergenic 40.0%
ACGTACACACACTTAGAGTT+GGG - Chr1:85343434-85343453 MsG0180004991.01.T01:intron 40.0%
ACTAAATCTTGAACCAGCAC+AGG + Chr1:85347179-85347198 None:intergenic 40.0%
ACTATCTGCTATTCCCATAG+TGG - Chr1:85344404-85344423 MsG0180004991.01.T01:intron 40.0%
AGCAAGATCACAATACCGTA+TGG + Chr1:85343960-85343979 None:intergenic 40.0%
AGCACCCATTTCTTACTACT+TGG + Chr1:85347871-85347890 None:intergenic 40.0%
AGCGGTTATTGCTTACATAG+CGG - Chr1:85344018-85344037 MsG0180004991.01.T01:intron 40.0%
AGGAACAATGAGTCTCACTT+TGG + Chr1:85344912-85344931 None:intergenic 40.0%
ATACCTTGTGAAGGTGAATC+AGG + Chr1:85342718-85342737 None:intergenic 40.0%
ATGTTGGATGATTGGAAGGA+AGG - Chr1:85346932-85346951 MsG0180004991.01.T01:CDS 40.0%
ATTCATGCATCCACGTGTAA+TGG - Chr1:85347439-85347458 MsG0180004991.01.T01:intron 40.0%
ATTCCTGTGTATCTGTGGTA+AGG - Chr1:85345916-85345935 MsG0180004991.01.T01:intron 40.0%
CAACAGGGACTTAGGTTTAA+TGG - Chr1:85343190-85343209 MsG0180004991.01.T01:intron 40.0%
CACAAATGTGTGAAGTGTGA+AGG + Chr1:85343643-85343662 None:intergenic 40.0%
CAGGGGTCCATATATAAACA+GGG + Chr1:85345643-85345662 None:intergenic 40.0%
CATGCAAAACCATTAGGCAT+TGG + Chr1:85347615-85347634 None:intergenic 40.0%
CATTAAACCTAAGTCCCTGT+TGG + Chr1:85343192-85343211 None:intergenic 40.0%
CGCAATAATGAATTCTTCCC+TGG - Chr1:85344670-85344689 MsG0180004991.01.T01:intron 40.0%
CGGATCCAAGTAGTAAGAAA+TGG - Chr1:85347863-85347882 MsG0180004991.01.T01:intron 40.0%
CTAAAGGGAATGTAGAGACA+GGG - Chr1:85346724-85346743 MsG0180004991.01.T01:CDS 40.0%
CTACTGCCTTCATCCATATT+AGG + Chr1:85345580-85345599 None:intergenic 40.0%
CTCCGATATGCAAAAATCCA+CGG + Chr1:85343996-85344015 None:intergenic 40.0%
CTGTTTATATATGGACCCCT+GGG - Chr1:85345642-85345661 MsG0180004991.01.T01:intron 40.0%
CTTGTGTGGAATAATTGGGA+AGG - Chr1:85344939-85344958 MsG0180004991.01.T01:intron 40.0%
GAAACGAAGGAGTGAGAATT+AGG - Chr1:85342578-85342597 MsG0180004991.01.T01:three_prime_UTR 40.0%
GAAAGAAGACTGTAATCCCA+GGG + Chr1:85345661-85345680 None:intergenic 40.0%
GAAATAGAAACACCCGTACA+GGG + Chr1:85348684-85348703 None:intergenic 40.0%
GAATCATGGGTGTACTCAAA+TGG + Chr1:85345970-85345989 None:intergenic 40.0%
GAGAAGAGAGAAAGAGAAGT+TGG + Chr1:85342443-85342462 None:intergenic 40.0%
GAGATAGACATACCTTGTGA+AGG + Chr1:85342727-85342746 None:intergenic 40.0%
GATCGGATTATCATGGTATC+TGG - Chr1:85344700-85344719 MsG0180004991.01.T01:intron 40.0%
GATGACACGTAAGAAGATTC+AGG + Chr1:85342659-85342678 None:intergenic 40.0%
GCAAGATCACAATACCGTAT+GGG + Chr1:85343959-85343978 None:intergenic 40.0%
GGAGTGAATTACAGACCTAA+TGG - Chr1:85346477-85346496 MsG0180004991.01.T01:intron 40.0%
GGATCACCAAAAATCCACTA+TGG + Chr1:85344421-85344440 None:intergenic 40.0%
GTAATTCACTCCGTTGTATG+AGG + Chr1:85346469-85346488 None:intergenic 40.0%
GTGAGACTCATTGTTCCTAA+TGG - Chr1:85344914-85344933 MsG0180004991.01.T01:intron 40.0%
TAAGCATGTTATTGTCAGGC+CGG - Chr1:85345191-85345210 MsG0180004991.01.T01:intron 40.0%
TACATCAGGACAGTAATGGT+AGG - Chr1:85345846-85345865 MsG0180004991.01.T01:intron 40.0%
TACCATGATAATCCGATCAG+TGG + Chr1:85344698-85344717 None:intergenic 40.0%
TATACGATATTCTTCCACCG+CGG + Chr1:85347574-85347593 None:intergenic 40.0%
TATACTTGAGGGATAAGGGA+AGG + Chr1:85347778-85347797 None:intergenic 40.0%
TATGCTCATCTGCAACACAA+TGG + Chr1:85347535-85347554 None:intergenic 40.0%
TATTATTACACGAGGACGCA+TGG + Chr1:85347341-85347360 None:intergenic 40.0%
TCAGGTTTACCAATGCCTAA+TGG - Chr1:85347603-85347622 MsG0180004991.01.T01:intron 40.0%
TCTAAAGGGAATGTAGAGAC+AGG - Chr1:85346723-85346742 MsG0180004991.01.T01:CDS 40.0%
TCTCTCTCGGTAATGTACAT+AGG - Chr1:85342765-85342784 MsG0180004991.01.T01:intron 40.0%
TCTGAAAGAGTAAGAGTGGT+AGG - Chr1:85346147-85346166 MsG0180004991.01.T01:intron 40.0%
TCTTCCGTAGTAAGGCAATA+AGG - Chr1:85342251-85342270 MsG0180004991.01.T01:three_prime_UTR 40.0%
TCTTTCAAAGTTGCTCAGTG+AGG - Chr1:85344759-85344778 MsG0180004991.01.T01:intron 40.0%
TGAAAGAAGACTGTAATCCC+AGG + Chr1:85345662-85345681 None:intergenic 40.0%
TGAACTTAGACCGTTCTTAC+AGG - Chr1:85348969-85348988 MsG0180004991.01.T01:intron 40.0%
TGATAGGATAGTACAGTGAC+AGG - Chr1:85345378-85345397 MsG0180004991.01.T01:intron 40.0%
TGCAGATGAGCATATAGGAT+TGG - Chr1:85347541-85347560 MsG0180004991.01.T01:intron 40.0%
TGGTATTACGCCAAAAAGGT+CGG - Chr1:85346196-85346215 MsG0180004991.01.T01:intron 40.0%
TGTGTGTGTGTTTGAAAGCT+TGG + Chr1:85346584-85346603 None:intergenic 40.0%
TGTGTTGCAGATGAGCATAT+AGG - Chr1:85347536-85347555 MsG0180004991.01.T01:intron 40.0%
TGTTCCTAATGGTTCTTGTG+TGG - Chr1:85344925-85344944 MsG0180004991.01.T01:intron 40.0%
TTACCTTACCACAGATACAC+AGG + Chr1:85345922-85345941 None:intergenic 40.0%
TTAGGGCAAGCAACATTACA+AGG + Chr1:85347065-85347084 None:intergenic 40.0%
TTCACTTTACCTAGGTCTTG+CGG + Chr1:85344175-85344194 None:intergenic 40.0%
! AGCCGTGGATTTTTGCATAT+CGG - Chr1:85343991-85344010 MsG0180004991.01.T01:intron 40.0%
! CATATCCTTTGTTGTCTTCC+AGG - Chr1:85347488-85347507 MsG0180004991.01.T01:intron 40.0%
! CTCTTGGTGATAGTGTGATT+TGG - Chr1:85346176-85346195 MsG0180004991.01.T01:intron 40.0%
! CTGGCTTTCGTTATACTTGA+GGG + Chr1:85347789-85347808 None:intergenic 40.0%
! GAGAGGTTTTCACTTTACCT+AGG + Chr1:85344183-85344202 None:intergenic 40.0%
! GATCTTTATTGTAGTGGGAG+AGG - Chr1:85348928-85348947 MsG0180004991.01.T01:CDS 40.0%
! GCGAGCATTGTGAAGAATTA+GGG + Chr1:85342810-85342829 None:intergenic 40.0%
! GGACAATCCTTTTACTATCC+TGG - Chr1:85349114-85349133 MsG0180004991.01.T01:intron 40.0%
! GTACAAAAGTACGTTGTTCC+TGG - Chr1:85343751-85343770 MsG0180004991.01.T01:intron 40.0%
! TAGCGGATCGTGGAAAATAT+CGG + Chr1:85344442-85344461 None:intergenic 40.0%
! TCAGAGCTTTTACATCCCTA+TGG - Chr1:85345143-85345162 MsG0180004991.01.T01:intron 40.0%
! TGGTTAGAACTAGAAGTGTG+TGG - Chr1:85349363-85349382 MsG0180004991.01.T02:five_prime_UTR 40.0%
! TTCAATTACTGGCCTGAGAT+AGG - Chr1:85349155-85349174 MsG0180004991.01.T01:five_prime_UTR 40.0%
! TTGGTATCACAGTGAGTTGA+CGG - Chr1:85343397-85343416 MsG0180004991.01.T01:intron 40.0%
! TTTGCTCCACTAGTCTGAAA+GGG + Chr1:85347682-85347701 None:intergenic 40.0%
! TTTTTGCCCTTTCAGACTAG+TGG - Chr1:85347673-85347692 MsG0180004991.01.T01:intron 40.0%
!! CAATGCCTAATGGTTTTGCA+TGG - Chr1:85347613-85347632 MsG0180004991.01.T01:intron 40.0%
!! GAGCATATAGGATTGGTTGT+TGG - Chr1:85347548-85347567 MsG0180004991.01.T01:intron 40.0%
!! GCTGGTTCTGTTATTGGAAA+GGG - Chr1:85344592-85344611 MsG0180004991.01.T01:intron 40.0%
!! GTGTTATTAATAGCGGATCG+TGG + Chr1:85344452-85344471 None:intergenic 40.0%
!! TGCTGGTTCTGTTATTGGAA+AGG - Chr1:85344591-85344610 MsG0180004991.01.T01:intron 40.0%
!!! TTGTCGTTTTCTTGCTTGCT+AGG - Chr1:85343679-85343698 MsG0180004991.01.T01:intron 40.0%
AAAATCCACGGCTATTGCAG+CGG + Chr1:85343984-85344003 None:intergenic 45.0%
AATGTATGAGCAGAGCAAGC+AGG + Chr1:85348852-85348871 None:intergenic 45.0%
ACAAACACGCCGTAAGAAAC+AGG + Chr1:85343110-85343129 None:intergenic 45.0%
ACCGGTCTTTACTCACTAAG+TGG + Chr1:85346121-85346140 None:intergenic 45.0%
ACTATCATGTGAGCTGCACA+TGG - Chr1:85344083-85344102 MsG0180004991.01.T01:CDS 45.0%
ACTCCTTCGTTTCAGAGAGA+GGG + Chr1:85342571-85342590 None:intergenic 45.0%
ACTGCTGCCAGGATAGTAAA+AGG + Chr1:85349124-85349143 None:intergenic 45.0%
AGTGAAGAGAGAAAGTGGAG+AGG + Chr1:85344225-85344244 None:intergenic 45.0%
ATAATCCGATCAGTGGTTCC+AGG + Chr1:85344691-85344710 None:intergenic 45.0%
ATCCTCCTGGAAGACAACAA+AGG + Chr1:85347496-85347515 None:intergenic 45.0%
ATCGCAGAGAGCAATTCGTA+CGG - Chr1:85348733-85348752 MsG0180004991.01.T01:intron 45.0%
ATGAGGAAAACCTGCTGTTC+TGG + Chr1:85346518-85346537 None:intergenic 45.0%
ATTCACTCCGTTGTATGAGG+TGG + Chr1:85346466-85346485 None:intergenic 45.0%
CAACTCTAAGTGTGTGTACG+TGG + Chr1:85343435-85343454 None:intergenic 45.0%
CACGTACACACACTTAGAGT+TGG - Chr1:85343433-85343452 MsG0180004991.01.T01:intron 45.0%
CCAGGGGTCCATATATAAAC+AGG + Chr1:85345644-85345663 None:intergenic 45.0%
CCCACTTAGTGAGTAAAGAC+CGG - Chr1:85346117-85346136 MsG0180004991.01.T01:intron 45.0%
CCGGTCTTTACTCACTAAGT+GGG + Chr1:85346120-85346139 None:intergenic 45.0%
CCTGTTTATATATGGACCCC+TGG - Chr1:85345641-85345660 MsG0180004991.01.T01:intron 45.0%
CGGTCTTTACTCACTAAGTG+GGG + Chr1:85346119-85346138 None:intergenic 45.0%
CTTTACTCACTAAGTGGGGT+CGG + Chr1:85346115-85346134 None:intergenic 45.0%
GACAGAGGCGATTACATATC+TGG - Chr1:85347715-85347734 MsG0180004991.01.T01:intron 45.0%
GAGCAAATCACCATTACACG+TGG + Chr1:85347452-85347471 None:intergenic 45.0%
GATATAAGTCAACTGCTGCC+AGG + Chr1:85349135-85349154 None:intergenic 45.0%
GCACACACATCACAACTTGA+GGG + Chr1:85349255-85349274 None:intergenic 45.0%
GCATGGATAATCGGTGTAGT+TGG + Chr1:85343866-85343885 None:intergenic 45.0%
GCCAACGTATGTTAGGTTTC+TGG - Chr1:85344555-85344574 MsG0180004991.01.T01:intron 45.0%
GCTGATATATTGACCTGTGC+TGG - Chr1:85347163-85347182 MsG0180004991.01.T01:intron 45.0%
GGAAATAGAAACACCCGTAC+AGG + Chr1:85348685-85348704 None:intergenic 45.0%
GGAATAGCAGATAGTGTAGC+AGG + Chr1:85344399-85344418 None:intergenic 45.0%
GGTATTACGCCAAAAAGGTC+GGG - Chr1:85346197-85346216 MsG0180004991.01.T01:intron 45.0%
GTGTGGAATAATTGGGAAGG+AGG - Chr1:85344942-85344961 MsG0180004991.01.T01:intron 45.0%
TAACTCTCCGATCCTATCTC+AGG + Chr1:85349170-85349189 None:intergenic 45.0%
TAATCCGATCAGTGGTTCCA+GGG + Chr1:85344690-85344709 None:intergenic 45.0%
TAGTACAGTGACAGGAACTC+TGG - Chr1:85345386-85345405 MsG0180004991.01.T01:intron 45.0%
TCTTACGTGTCATCTCCAGA+AGG - Chr1:85342665-85342684 MsG0180004991.01.T01:three_prime_UTR 45.0%
TCTTCTTTCACCTTCGTTGC+AGG - Chr1:85345672-85345691 MsG0180004991.01.T01:intron 45.0%
TGCACACACATCACAACTTG+AGG + Chr1:85349256-85349275 None:intergenic 45.0%
TGCTTATGTCTCGGGTTATC+AGG - Chr1:85346406-85346425 MsG0180004991.01.T01:intron 45.0%
TGTTGCACCACCTCATACAA+CGG - Chr1:85346456-85346475 MsG0180004991.01.T01:intron 45.0%
TTGCTTATGCTACGAGAGAG+TGG - Chr1:85348779-85348798 MsG0180004991.01.T01:intron 45.0%
! ACATCACAACTTGAGGGTGT+AGG + Chr1:85349249-85349268 None:intergenic 45.0%
! ATCCTTTGTTGTCTTCCAGG+AGG - Chr1:85347491-85347510 MsG0180004991.01.T01:intron 45.0%
! CATCACAACTTGAGGGTGTA+GGG + Chr1:85349248-85349267 None:intergenic 45.0%
! CGCGAGCATTGTGAAGAATT+AGG + Chr1:85342811-85342830 None:intergenic 45.0%
! CTTTGCTCCACTAGTCTGAA+AGG + Chr1:85347683-85347702 None:intergenic 45.0%
! GGAGCACCTAATATGGATGA+AGG - Chr1:85345571-85345590 MsG0180004991.01.T01:intron 45.0%
! TGGTATCACAGTGAGTTGAC+GGG - Chr1:85343398-85343417 MsG0180004991.01.T01:intron 45.0%
! TTACTGGCCTGAGATAGGAT+CGG - Chr1:85349160-85349179 MsG0180004991.01.T01:five_prime_UTR 45.0%
! TTTAGTTGCAGGGGAAGCAT+AGG + Chr1:85345169-85345188 None:intergenic 45.0%
!! AGAAAGAGAAGTTGGTGCTG+CGG + Chr1:85342435-85342454 None:intergenic 45.0%
!! ATATGATTAGCTTCACGGCG+AGG - Chr1:85344862-85344881 MsG0180004991.01.T01:intron 45.0%
!! GCTGGCTTTCGTTATACTTG+AGG + Chr1:85347790-85347809 None:intergenic 45.0%
!! TCTGCTGCTGGTTCTGTTAT+TGG - Chr1:85344586-85344605 MsG0180004991.01.T01:intron 45.0%
!! TTTCCCTCTCTCTGAAACGA+AGG - Chr1:85342565-85342584 MsG0180004991.01.T01:three_prime_UTR 45.0%
!! ATTGTTATAAATATAAAATA+TGG - Chr1:85343530-85343549 MsG0180004991.01.T01:intron 5.0%
AAACAAACGTGACGTTGCGG+TGG - Chr1:85342380-85342399 MsG0180004991.01.T01:three_prime_UTR 50.0%
AACAAACGTGACGTTGCGGT+GGG - Chr1:85342381-85342400 MsG0180004991.01.T01:three_prime_UTR 50.0%
AACCGCGACGAAATCCCATA+CGG - Chr1:85343942-85343961 MsG0180004991.01.T01:intron 50.0%
AATATGCTGCTGCGTGTGTG+TGG + Chr1:85342345-85342364 None:intergenic 50.0%
ACGCTGAATCGGTGATGAGA+TGG - Chr1:85344136-85344155 MsG0180004991.01.T01:intron 50.0%
ACTAAGTGGGGTCGGTTACA+TGG + Chr1:85346107-85346126 None:intergenic 50.0%
AGAAGAAAGACAGATGGGCC+CGG + Chr1:85345808-85345827 None:intergenic 50.0%
ATATGCTGCTGCGTGTGTGT+GGG + Chr1:85342344-85342363 None:intergenic 50.0%
CACTCCTTCGTTTCAGAGAG+AGG + Chr1:85342572-85342591 None:intergenic 50.0%
CCTCCTGATTCACCTTCACA+AGG - Chr1:85342712-85342731 MsG0180004991.01.T01:three_prime_UTR 50.0%
CCTTGTGAAGGTGAATCAGG+AGG + Chr1:85342715-85342734 None:intergenic 50.0%
CGCTGAATCGGTGATGAGAT+GGG - Chr1:85344137-85344156 MsG0180004991.01.T01:intron 50.0%
CGTATGTAACCGCAAGACCT+AGG - Chr1:85344163-85344182 MsG0180004991.01.T01:intron 50.0%
CGTGTAACCAACAGGGACTT+AGG - Chr1:85343182-85343201 MsG0180004991.01.T01:intron 50.0%
CGTTGCAGGAAGGAAGTAGA+TGG - Chr1:85345686-85345705 MsG0180004991.01.T01:intron 50.0%
CTAAGTGGGGTCGGTTACAT+GGG + Chr1:85346106-85346125 None:intergenic 50.0%
CTACTTCCTTCCTGCAACGA+AGG + Chr1:85345685-85345704 None:intergenic 50.0%
CTGAATCGGTGATGAGATGG+GGG - Chr1:85344139-85344158 MsG0180004991.01.T01:intron 50.0%
CTGGTATCAAACTCTGCTGC+TGG - Chr1:85344574-85344593 MsG0180004991.01.T01:intron 50.0%
CTTTCACCTTCGTTGCAGGA+AGG - Chr1:85345676-85345695 MsG0180004991.01.T01:intron 50.0%
GAGCAAAGTTCCAGAACAGC+AGG - Chr1:85346505-85346524 MsG0180004991.01.T01:intron 50.0%
GAGTGGTAGGATCGTACTCT+TGG - Chr1:85346160-85346179 MsG0180004991.01.T01:intron 50.0%
GCTGAATCGGTGATGAGATG+GGG - Chr1:85344138-85344157 MsG0180004991.01.T01:intron 50.0%
GTATGAGGTGGTGCAACAGA+TGG + Chr1:85346454-85346473 None:intergenic 50.0%
TACCGTATGGGATTTCGTCG+CGG + Chr1:85343947-85343966 None:intergenic 50.0%
TAGAAACACCCGTACAGGGA+CGG + Chr1:85348680-85348699 None:intergenic 50.0%
TCTTCCCTGGAACCACTGAT+CGG - Chr1:85344683-85344702 MsG0180004991.01.T01:intron 50.0%
TGCAGGAAGGAAGTAGATGG+AGG - Chr1:85345689-85345708 MsG0180004991.01.T01:intron 50.0%
TGCTCTCTGCGATCCTGTTA+TGG + Chr1:85348726-85348745 None:intergenic 50.0%
TGTGAAGGTGAATCAGGAGG+AGG + Chr1:85342712-85342731 None:intergenic 50.0%
TTTCTGGATCCGTCCCTGTA+CGG - Chr1:85348668-85348687 MsG0180004991.01.T01:intron 50.0%
! AGCAGATGTTTTACGGGTGC+AGG - Chr1:85347838-85347857 MsG0180004991.01.T01:intron 50.0%
! AGGTGAAGAAGCGTGCTTCT+CGG + Chr1:85342692-85342711 None:intergenic 50.0%
! ATGTTTTACGGGTGCAGGCA+CGG - Chr1:85347843-85347862 MsG0180004991.01.T01:intron 50.0%
! TTATTGTAGTGGGAGAGGGC+AGG - Chr1:85348933-85348952 MsG0180004991.01.T01:CDS 50.0%
! TTGAGTTGCTTCGATCCTCC+TGG + Chr1:85347509-85347528 None:intergenic 50.0%
!! ATAGGATTGGTTGTTGGCCG+CGG - Chr1:85347554-85347573 MsG0180004991.01.T01:intron 50.0%
GAACTCTGGATGAGCATGCG+TGG - Chr1:85345400-85345419 MsG0180004991.01.T01:intron 55.0%
TTCTGGATCCGTCCCTGTAC+GGG - Chr1:85348669-85348688 MsG0180004991.01.T01:intron 55.0%
! CAGGGGAAGCATAGGCCATA+GGG + Chr1:85345161-85345180 None:intergenic 55.0%
!! GGGAAGGAGGTGCTACCATT+AGG - Chr1:85344955-85344974 MsG0180004991.01.T01:intron 55.0%
AGCGTGCTTCTCGGTCCTTC+TGG + Chr1:85342683-85342702 None:intergenic 60.0%
TGCTACCGCTGCAATAGCCG+TGG - Chr1:85343976-85343995 MsG0180004991.01.T01:intron 60.0%
! GCAGGGGAAGCATAGGCCAT+AGG + Chr1:85345162-85345181 None:intergenic 60.0%
!! GGATTGGTTGTTGGCCGCGG+TGG - Chr1:85347557-85347576 MsG0180004991.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 85342226 85349397 85342226 ID=MsG0180004991.01;Name=MsG0180004991.01
Chr1 mRNA 85342226 85349326 85342226 ID=MsG0180004991.01.T01;Parent=MsG0180004991.01;Name=MsG0180004991.01.T01;_AED=0.38;_eAED=0.40;_QI=241|0.42|0.62|1|0.42|0.37|8|550|258
Chr1 exon 85349146 85349326 85349146 ID=MsG0180004991.01.T01:exon:9596;Parent=MsG0180004991.01.T01
Chr1 five_prime_UTR 85349146 85349326 85349146 ID=MsG0180004991.01.T01:five_prime_utr;Parent=MsG0180004991.01.T01
Chr1 five_prime_UTR 85348977 85349036 85348977 ID=MsG0180004991.01.T01:five_prime_utr;Parent=MsG0180004991.01.T01
Chr1 CDS 85348890 85348976 85348890 ID=MsG0180004991.01.T01:cds;Parent=MsG0180004991.01.T01
Chr1 CDS 85347865 85347922 85347865 ID=MsG0180004991.01.T01:cds;Parent=MsG0180004991.01.T01
Chr1 CDS 85346843 85347081 85346843 ID=MsG0180004991.01.T01:cds;Parent=MsG0180004991.01.T01
Chr1 CDS 85346688 85346751 85346688 ID=MsG0180004991.01.T01:cds;Parent=MsG0180004991.01.T01
Chr1 CDS 85344022 85344113 85344022 ID=MsG0180004991.01.T01:cds;Parent=MsG0180004991.01.T01
Chr1 CDS 85343831 85343935 85343831 ID=MsG0180004991.01.T01:cds;Parent=MsG0180004991.01.T01
Chr1 CDS 85342776 85342907 85342776 ID=MsG0180004991.01.T01:cds;Parent=MsG0180004991.01.T01
Chr1 three_prime_UTR 85342226 85342775 85342226 ID=MsG0180004991.01.T01:three_prime_utr;Parent=MsG0180004991.01.T01
Chr1 mRNA 85342226 85349397 85342226 ID=MsG0180004991.01.T02;Parent=MsG0180004991.01;Name=MsG0180004991.01.T02;_AED=0.39;_eAED=0.41;_QI=107|0.42|0.62|1|0.42|0.37|8|550|258
Chr1 exon 85349351 85349397 85349351 ID=MsG0180004991.01.T02:exon:9604;Parent=MsG0180004991.01.T02
Chr1 five_prime_UTR 85349351 85349397 85349351 ID=MsG0180004991.01.T02:five_prime_utr;Parent=MsG0180004991.01.T02
Chr1 five_prime_UTR 85348977 85349036 85348977 ID=MsG0180004991.01.T02:five_prime_utr;Parent=MsG0180004991.01.T02
Chr1 CDS 85348890 85348976 85348890 ID=MsG0180004991.01.T02:cds;Parent=MsG0180004991.01.T02
Chr1 CDS 85347865 85347922 85347865 ID=MsG0180004991.01.T02:cds;Parent=MsG0180004991.01.T02
Chr1 CDS 85346843 85347081 85346843 ID=MsG0180004991.01.T02:cds;Parent=MsG0180004991.01.T02
Chr1 CDS 85346688 85346751 85346688 ID=MsG0180004991.01.T02:cds;Parent=MsG0180004991.01.T02
Chr1 CDS 85344022 85344113 85344022 ID=MsG0180004991.01.T02:cds;Parent=MsG0180004991.01.T02
Chr1 CDS 85343831 85343935 85343831 ID=MsG0180004991.01.T02:cds;Parent=MsG0180004991.01.T02
Chr1 CDS 85342776 85342907 85342776 ID=MsG0180004991.01.T02:cds;Parent=MsG0180004991.01.T02
Chr1 three_prime_UTR 85342226 85342775 85342226 ID=MsG0180004991.01.T02:three_prime_utr;Parent=MsG0180004991.01.T02
Gene Sequence

>MsG0180004991.01.T02

ATGGAGTCTCCTGAATCTTCTTACGTGTCATCTCCAGAAGGACCGAGAAGCACGCTTCTTCACCTCCTCCTGATTCACCTTCACAAGGACAGTTATTCGATGTATGAACTCTGCATTTGTTTTGTTTTGTTTTATGGGTACAAAAATTCTGTAGAAAAGCCAACGTATGTTAGGTTTCTGGTATCAAACTCTGCTGCTGGTTCTGTTATTGGAAAGGGTGTTTCAACTATCACTGATTTTCAGTCACAATCTGGAGCACGAATCCAGTTGTCACGCAATAATGAATTCTTCCCTGGAACCACTGATCGGATTATCATGGTATCTGGTGCAATCAATGAAGTACTAAGAGCTGTAGAGCTCATTCTTTCAAAGTTGCTCAGTGAGCTTCACGGCGAGGATGACAATGATGTTGAGCCAAAAACCAAAGTGAGACTCATTGTTCCTAATGGAGGATCGAAGCAACTCAATGACCATTGTGTTGCAGATGAGCATATAGGATTGGTTGTTGGCCGCGGTGGAAGAATATCGTATATTAGTCAGACTAGTGGAGCAAAGATAAAGATATCAGACAGAGGCGATTACATATCTGGAACAACTGATAGGTTAGTTTTGTTCACTTACATTTTTCCTTCCCTTATCCCTCAAGAAGTTACCATAACAGGATCGCAGAGAGCAATTCGTACGGCTGAATCTATGATACTGCAGAAGTTGCTTATGCTACGAGAGAGTGGAGTAGTAATTTGCAAGTTCACTTGTCTACTGTTAGATTCTTGGTGA

>MsG0180004991.01.T01

ATGGAGTCTCCTGAATCTTCTTACGTGTCATCTCCAGAAGGACCGAGAAGCACGCTTCTTCACCTCCTCCTGATTCACCTTCACAAGGACAGTTATTCGATGTATGAACTCTGCATTTGTTTTGTTTTGTTTTATGGGTACAAAAATTCTGTAGAAAAGCCAACGTATGTTAGGTTTCTGGTATCAAACTCTGCTGCTGGTTCTGTTATTGGAAAGGGTGTTTCAACTATCACTGATTTTCAGTCACAATCTGGAGCACGAATCCAGTTGTCACGCAATAATGAATTCTTCCCTGGAACCACTGATCGGATTATCATGGTATCTGGTGCAATCAATGAAGTACTAAGAGCTGTAGAGCTCATTCTTTCAAAGTTGCTCAGTGAGCTTCACGGCGAGGATGACAATGATGTTGAGCCAAAAACCAAAGTGAGACTCATTGTTCCTAATGGAGGATCGAAGCAACTCAATGACCATTGTGTTGCAGATGAGCATATAGGATTGGTTGTTGGCCGCGGTGGAAGAATATCGTATATTAGTCAGACTAGTGGAGCAAAGATAAAGATATCAGACAGAGGCGATTACATATCTGGAACAACTGATAGGTTAGTTTTGTTCACTTACATTTTTCCTTCCCTTATCCCTCAAGAAGTTACCATAACAGGATCGCAGAGAGCAATTCGTACGGCTGAATCTATGATACTGCAGAAGTTGCTTATGCTACGAGAGAGTGGAGTAGTAATTTGCAAGTTCACTTGTCTACTGTTAGATTCTTGGTGA

Protein sequence

>MsG0180004991.01.T02

MESPESSYVSSPEGPRSTLLHLLLIHLHKDSYSMYELCICFVLFYGYKNSVEKPTYVRFLVSNSAAGSVIGKGVSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSGAINEVLRAVELILSKLLSELHGEDDNDVEPKTKVRLIVPNGGSKQLNDHCVADEHIGLVVGRGGRISYISQTSGAKIKISDRGDYISGTTDRLVLFTYIFPSLIPQEVTITGSQRAIRTAESMILQKLLMLRESGVVICKFTCLLLDSW*

>MsG0180004991.01.T01

MESPESSYVSSPEGPRSTLLHLLLIHLHKDSYSMYELCICFVLFYGYKNSVEKPTYVRFLVSNSAAGSVIGKGVSTITDFQSQSGARIQLSRNNEFFPGTTDRIIMVSGAINEVLRAVELILSKLLSELHGEDDNDVEPKTKVRLIVPNGGSKQLNDHCVADEHIGLVVGRGGRISYISQTSGAKIKISDRGDYISGTTDRLVLFTYIFPSLIPQEVTITGSQRAIRTAESMILQKLLMLRESGVVICKFTCLLLDSW*