AlfalfaGEDB | MsG0480018335.01

M. sativa cultivar ZhongmuNo.1 / MsG0480018335.01

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018335.01.T01	XP_003604371.1	96.809	282	7	1	1	282	1	280	0	559

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018335.01.T01	Q9LVZ7	77.83	212	47	0	49	260	69	280	9.06E-122	353

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018335.01.T01	G7JGX5	96.809	282	7	1	1	282	1	280	0.0	559

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048383.01	MsG0480018335.01	0.807780	4.275455e-50	2.402669e-47
MsG0080048687.01	MsG0480018335.01	0.866510	2.704662e-65	9.138733e-62
MsG0180000331.01	MsG0480018335.01	0.820162	7.934108e-53	6.230342e-50
MsG0180000339.01	MsG0480018335.01	0.806379	8.466306e-50	4.588252e-47
MsG0180001237.01	MsG0480018335.01	0.810944	8.958805e-51	5.474235e-48
MsG0180001260.01	MsG0480018335.01	0.800544	1.371550e-48	6.403331e-46
MsG0180003744.01	MsG0480018335.01	0.802818	4.683294e-49	2.316576e-46
MsG0180003793.01	MsG0480018335.01	0.853190	2.814501e-61	6.030975e-58
MsG0180003984.01	MsG0480018335.01	0.834767	2.477820e-56	2.969227e-53
MsG0180004009.01	MsG0480018335.01	0.827059	1.928408e-54	1.841157e-51

Showing 1 to 10 of 89 entries

Previous1 2 3 4 5…9Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018335.01.T01	MTR_4g010120	96.809	282	7	1	1	282	1	280	0.0	559

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480018335.01.T01	AT3G15820	77.830	212	47	0	49	260	69	280	9.24e-123	353
MsG0480018335.01.T01	AT3G15830	69.957	233	69	1	49	281	64	295	1.63e-117	339

Showing 1 to 2 of 2 entries

Previous1Next

Find 89 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAAACCCAAATCAAA+GGG	0.542870	4:-3496165	None:intergenic
AAAATTGGGAATACTGTGAC+TGG	0.534304	4:-3495641	None:intergenic
AAAGGGAAACACACAGAAAA+AGG	0.257363	4:+3498204	MsG0480018335.01.T01:three_prime_UTR
AAGACCTAGAGCAACAATCT+CGG	0.589198	4:+3497082	MsG0480018335.01.T01:CDS
AATCTCAGATGTTGTACACG+TGG	0.689946	4:+3496047	MsG0480018335.01.T01:CDS
AATGTAATGAAGGCATTAGG+GGG	0.617798	4:-3495836	None:intergenic
AATTTGAGACTGTACCCAAA+AGG	0.497856	4:+3498186	MsG0480018335.01.T01:three_prime_UTR
ACAAAACCCAAATCAAAGGG+TGG	0.648382	4:-3496162	None:intergenic
ACACTATTGATTTGGCTGTT+GGG	0.428713	4:+3498044	MsG0480018335.01.T01:CDS
ACATGAGGAGGATGAAGAGA+TGG	0.426409	4:+3497951	MsG0480018335.01.T01:CDS

Showing 1 to 10 of 89 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATGATACATTCCCAAC+TGG	-	Chr4:3497884-3497903	None:intergenic	30.0%
ACTAGAAGCTTACAATGAAA+GGG	+	Chr4:3497462-3497481	MsG0480018335.01.T01:intron	30.0%
ATAAGATTCTGGTGAAATTG+AGG	-	Chr4:3495810-3495829	None:intergenic	30.0%
CATTGTAAGCTTCTAGTAAT+GGG	-	Chr4:3497459-3497478	None:intergenic	30.0%
CGAGTTATATATTATGGACT+TGG	+	Chr4:3497048-3497067	MsG0480018335.01.T01:CDS	30.0%
GAAAACAAAACCCAAATCAA+AGG	-	Chr4:3496169-3496188	None:intergenic	30.0%
GAAATTGAGGTTGTAATTGA+CGG	-	Chr4:3495797-3495816	None:intergenic	30.0%
GAAGAAGAAGAAGAATTCTT+CGG	-	Chr4:3495982-3496001	None:intergenic	30.0%
GTGTTTGATTGATATGCAAA+TGG	+	Chr4:3496378-3496397	MsG0480018335.01.T01:intron	30.0%
GTTAGAGTGAAAAGTTTGAT+TGG	-	Chr4:3495944-3495963	None:intergenic	30.0%

Showing 1 to 10 of 178 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	3495633	3498529	3495633	ID=MsG0480018335.01;Name=MsG0480018335.01
Chr4	mRNA	3495633	3498529	3495633	ID=MsG0480018335.01.T01;Parent=MsG0480018335.01;Name=MsG0480018335.01.T01;_AED=0.44;_eAED=0.44;_QI=244\|1\|1\|1\|0.5\|0.66\|3\|346\|282
Chr4	exon	3495633	3496257	3495633	ID=MsG0480018335.01.T01:exon:1015;Parent=MsG0480018335.01.T01
Chr4	exon	3497029	3497166	3497029	ID=MsG0480018335.01.T01:exon:1016;Parent=MsG0480018335.01.T01
Chr4	exon	3497854	3498529	3497854	ID=MsG0480018335.01.T01:exon:1017;Parent=MsG0480018335.01.T01
Chr4	five_prime_UTR	3495633	3495876	3495633	ID=MsG0480018335.01.T01:five_prime_utr;Parent=MsG0480018335.01.T01
Chr4	CDS	3495877	3496257	3495877	ID=MsG0480018335.01.T01:cds;Parent=MsG0480018335.01.T01
Chr4	CDS	3497029	3497166	3497029	ID=MsG0480018335.01.T01:cds;Parent=MsG0480018335.01.T01
Chr4	CDS	3497854	3498183	3497854	ID=MsG0480018335.01.T01:cds;Parent=MsG0480018335.01.T01
Chr4	three_prime_UTR	3498184	3498529	3498184	ID=MsG0480018335.01.T01:three_prime_utr;Parent=MsG0480018335.01.T01

Gene Sequence

>MsG0480018335.01.T01

ATGAACGGCGGCGCCGCCTCTTCCTCCGGTGACGCCACCGTCCTCAAACGCAGACACACCACCACCAATCAAACTTTTCACTCTAACCAAAAAAATCCAATGCCGAAGAATTCTTCTTCTTCTTCTTCTCTTTGTTCTCTGTATTCTTCAGCTTCGTTCATGAAATGGACAATCTCAGATGTTGTACACGTGGCAACACATCATTGGATGCCGTGTTTGTTTGCTTGTGGTCTTTTGTTCTTCATGGCTGTGGAATACACGCTCTTTATGGTTCCTTCTTCTTCTCCACCCTTTGATTTGGGTTTTGTTTTCACGCGTGATCTTCATCGTGTTCTTGAATCTTCTCCTCAGCTCAATAATGTTCTAGCTGCTCTTAATACGGTGTTTGTGTTAATGCAAACGAGTTATATATTATGGACTTGGTTAATTGAAGGAAGACCTAGAGCAACAATCTCGGCTCTTTTCATGTTTACATGTCGTGGGATTTGTGGGTATTCCACCCAGCTACCATTGCCTCAGGGATTTTTGGGTTCTGGTGTGGACTTTCCAGTTGGGAATGTATCATTTTTCCTGTTTTTTTCGGGTCATGTGGCGGGTTCAGTGATAGCTTCATTAGACATGAGGAGGATGAAGAGATGGGAGATGGCATGGACTTTTGATTTGTTGAATGTATTGCAAGCTGTGAGGTTACTTGGTACAAGAGGCCATTACACTATTGATTTGGCTGTTGGGTTAGGTGCTGGCTATATATTTGACTCTTTAGCTGGTAAGTACCTTGAAGATAGCAAGTTGAAAATAGCTAAAAATAGTGTCAATGGCCATGCCTCTAAACATGATTTGGTTGCATGA

Protein sequence

>MsG0480018335.01.T01

MNGGAASSSGDATVLKRRHTTTNQTFHSNQKNPMPKNSSSSSSLCSLYSSASFMKWTISDVVHVATHHWMPCLFACGLLFFMAVEYTLFMVPSSSPPFDLGFVFTRDLHRVLESSPQLNNVLAALNTVFVLMQTSYILWTWLIEGRPRATISALFMFTCRGICGYSTQLPLPQGFLGSGVDFPVGNVSFFLFFSGHVAGSVIASLDMRRMKRWEMAWTFDLLNVLQAVRLLGTRGHYTIDLAVGLGAGYIFDSLAGKYLEDSKLKIAKNSVNGHASKHDLVA*