Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006545.01.T01 | XP_006594657.1 | 44.167 | 360 | 66 | 7 | 1 | 229 | 37 | 392 | 1.75E-73 | 238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006545.01.T01 | Q8VZI2 | 35.476 | 389 | 88 | 7 | 1 | 229 | 37 | 422 | 2.94E-53 | 179 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006545.01.T01 | G7IFC4 | 46.292 | 391 | 48 | 5 | 1 | 229 | 37 | 427 | 3.06e-70 | 230 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048383.01 | MsG0280006545.01 | 0.844933 | 5.562016e-59 | 9.120935e-56 |
| MsG0180000144.01 | MsG0280006545.01 | 0.834444 | 2.987120e-56 | 3.545597e-53 |
| MsG0180000331.01 | MsG0280006545.01 | 0.838201 | 3.310054e-57 | 4.401325e-54 |
| MsG0180000836.01 | MsG0280006545.01 | 0.828349 | 9.446466e-55 | 9.364840e-52 |
| MsG0180001173.01 | MsG0280006545.01 | 0.820011 | 8.590888e-53 | 6.717917e-50 |
| MsG0180001260.01 | MsG0280006545.01 | 0.815401 | 9.421318e-52 | 6.488929e-49 |
| MsG0180002664.01 | MsG0280006545.01 | 0.809760 | 1.613290e-50 | 9.554197e-48 |
| MsG0180003181.01 | MsG0280006545.01 | 0.848554 | 5.691010e-60 | 1.048313e-56 |
| MsG0180003651.01 | MsG0280006545.01 | 0.809561 | 1.780969e-50 | 1.049087e-47 |
| MsG0180003793.01 | MsG0280006545.01 | 0.810434 | 1.155106e-50 | 6.961742e-48 |
| MsG0180003922.01 | MsG0280006545.01 | 0.825576 | 4.347697e-54 | 3.978330e-51 |
| MsG0180003932.01 | MsG0280006545.01 | 0.822079 | 2.869210e-53 | 2.376944e-50 |
| MsG0180004160.01 | MsG0280006545.01 | 0.822306 | 2.542039e-53 | 2.119738e-50 |
| MsG0180004398.01 | MsG0280006545.01 | 0.813841 | 2.086587e-51 | 1.377593e-48 |
| MsG0180004861.01 | MsG0280006545.01 | 0.808793 | 2.600571e-50 | 1.500756e-47 |
| MsG0180005205.01 | MsG0280006545.01 | 0.822985 | 1.767133e-53 | 1.502289e-50 |
| MsG0180005443.01 | MsG0280006545.01 | 0.813215 | 2.865235e-51 | 1.859660e-48 |
| MsG0180005451.01 | MsG0280006545.01 | 0.822816 | 1.934197e-53 | 1.636465e-50 |
| MsG0180005575.01 | MsG0280006545.01 | 0.806535 | 7.845704e-50 | 4.269071e-47 |
| MsG0180005787.01 | MsG0280006545.01 | 0.800206 | 1.606554e-48 | 7.436670e-46 |
| MsG0180006096.01 | MsG0280006545.01 | 0.802719 | 4.910089e-49 | 2.422533e-46 |
| MsG0180006225.01 | MsG0280006545.01 | 0.833933 | 4.010712e-56 | 4.688548e-53 |
| MsG0280006376.01 | MsG0280006545.01 | 0.827395 | 1.602178e-54 | 1.544984e-51 |
| MsG0280006461.01 | MsG0280006545.01 | 0.805051 | 1.608894e-49 | 8.427674e-47 |
| MsG0280006545.01 | MsG0280006852.01 | 0.808762 | 2.640375e-50 | 1.522502e-47 |
| MsG0280006545.01 | MsG0280006993.01 | 0.816983 | 4.172783e-52 | 3.001460e-49 |
| MsG0280006545.01 | MsG0280007226.01 | 0.808187 | 3.503460e-50 | 1.990079e-47 |
| MsG0280006545.01 | MsG0280007527.01 | 0.807410 | 5.123816e-50 | 2.851903e-47 |
| MsG0280006545.01 | MsG0280007847.01 | 0.825275 | 5.122285e-54 | 4.647390e-51 |
| MsG0280006545.01 | MsG0280007903.01 | 0.813318 | 2.719951e-51 | 1.770425e-48 |
| MsG0280006545.01 | MsG0280007992.01 | 0.810968 | 8.852080e-51 | 5.412475e-48 |
| MsG0280006545.01 | MsG0280008234.01 | 0.800803 | 1.214050e-48 | 5.705488e-46 |
| MsG0280006545.01 | MsG0280008909.01 | 0.800565 | 1.358076e-48 | 6.343824e-46 |
| MsG0280006545.01 | MsG0280009575.01 | 0.829801 | 4.200508e-55 | 4.345674e-52 |
| MsG0280006545.01 | MsG0280010287.01 | 0.811587 | 6.496742e-51 | 4.037284e-48 |
| MsG0280006545.01 | MsG0380011614.01 | 0.807470 | 4.975677e-50 | 2.773798e-47 |
| MsG0280006545.01 | MsG0380011927.01 | 0.815885 | 7.348932e-52 | 5.128949e-49 |
| MsG0280006545.01 | MsG0380013085.01 | 0.822723 | 2.033704e-53 | 1.716114e-50 |
| MsG0280006545.01 | MsG0380014175.01 | 0.829585 | 4.740370e-55 | 4.872480e-52 |
| MsG0280006545.01 | MsG0380014778.01 | 0.821279 | 4.394535e-53 | 3.559218e-50 |
| MsG0280006545.01 | MsG0380014875.01 | 0.815009 | 1.151154e-51 | 7.844356e-49 |
| MsG0280006545.01 | MsG0380015220.01 | 0.817545 | 3.119462e-52 | 2.278486e-49 |
| MsG0280006545.01 | MsG0380016005.01 | 0.829075 | 6.305980e-55 | 6.385086e-52 |
| MsG0280006545.01 | MsG0380016126.01 | 0.800733 | 1.254775e-48 | 5.886410e-46 |
| MsG0280006545.01 | MsG0380016247.01 | 0.802300 | 5.989127e-49 | 2.923626e-46 |
| MsG0280006545.01 | MsG0380016290.01 | 0.833331 | 5.669925e-56 | 6.509439e-53 |
| MsG0280006545.01 | MsG0380016387.01 | 0.800358 | 1.496519e-48 | 6.954206e-46 |
| MsG0280006545.01 | MsG0380016505.01 | 0.822502 | 2.289254e-53 | 1.919635e-50 |
| MsG0280006545.01 | MsG0380017433.01 | 0.801023 | 1.094787e-48 | 5.174221e-46 |
| MsG0280006545.01 | MsG0380018033.01 | 0.835184 | 1.944878e-56 | 2.360226e-53 |
| MsG0280006545.01 | MsG0480018235.01 | 0.827523 | 1.492444e-54 | 1.444315e-51 |
| MsG0280006545.01 | MsG0480018278.01 | 0.825841 | 3.760894e-54 | 3.467883e-51 |
| MsG0280006545.01 | MsG0480018335.01 | 0.811133 | 8.151945e-51 | 5.005796e-48 |
| MsG0280006545.01 | MsG0480020675.01 | 0.813675 | 2.269830e-51 | 1.491888e-48 |
| MsG0280006545.01 | MsG0480021037.01 | 0.839875 | 1.219786e-57 | 1.707275e-54 |
| MsG0280006545.01 | MsG0480021077.01 | -0.809660 | 1.695615e-50 | 1.001477e-47 |
| MsG0280006545.01 | MsG0480021735.01 | 0.830872 | 2.299578e-55 | 2.453939e-52 |
| MsG0280006545.01 | MsG0480021768.01 | 0.800705 | 1.271331e-48 | 5.959701e-46 |
| MsG0280006545.01 | MsG0480022593.01 | 0.803628 | 3.184254e-49 | 1.607971e-46 |
| MsG0280006545.01 | MsG0480022672.01 | 0.804555 | 2.041963e-49 | 1.056012e-46 |
| MsG0280006545.01 | MsG0480022780.01 | 0.813308 | 2.733847e-51 | 1.778988e-48 |
| MsG0280006545.01 | MsG0480022960.01 | 0.802574 | 5.259199e-49 | 2.585105e-46 |
| MsG0280006545.01 | MsG0480023221.01 | 0.842039 | 3.298433e-58 | 4.938337e-55 |
| MsG0280006545.01 | MsG0480023387.01 | 0.850979 | 1.196230e-60 | 2.385314e-57 |
| MsG0280006545.01 | MsG0580024966.01 | 0.806542 | 7.821739e-50 | 4.256787e-47 |
| MsG0280006545.01 | MsG0580025268.01 | 0.816856 | 4.456086e-52 | 3.193914e-49 |
| MsG0280006545.01 | MsG0580025439.01 | 0.800971 | 1.122189e-48 | 5.296631e-46 |
| MsG0280006545.01 | MsG0580025816.01 | 0.806260 | 8.966460e-50 | 4.845032e-47 |
| MsG0280006545.01 | MsG0580026864.01 | 0.814975 | 1.171528e-51 | 7.975509e-49 |
| MsG0280006545.01 | MsG0580028582.01 | 0.820380 | 7.072193e-53 | 5.587325e-50 |
| MsG0280006545.01 | MsG0580028597.01 | 0.848402 | 6.269784e-60 | 1.149315e-56 |
| MsG0280006545.01 | MsG0580028897.01 | 0.831329 | 1.775918e-55 | 1.920896e-52 |
| MsG0280006545.01 | MsG0580029647.01 | 0.803495 | 3.392978e-49 | 1.707578e-46 |
| MsG0280006545.01 | MsG0580029801.01 | 0.821721 | 3.473655e-53 | 2.848579e-50 |
| MsG0280006545.01 | MsG0580029919.01 | 0.805642 | 1.209549e-49 | 6.432871e-47 |
| MsG0280006545.01 | MsG0680030350.01 | 0.802017 | 6.849529e-49 | 3.319398e-46 |
| MsG0280006545.01 | MsG0680030968.01 | 0.802692 | 4.972511e-49 | 2.451603e-46 |
| MsG0280006545.01 | MsG0680031000.01 | 0.805615 | 1.225444e-49 | 6.512755e-47 |
| MsG0280006545.01 | MsG0680031145.01 | 0.803946 | 2.734580e-49 | 1.392342e-46 |
| MsG0280006545.01 | MsG0680035306.01 | 0.814286 | 1.664194e-51 | 1.112085e-48 |
| MsG0280006545.01 | MsG0680035577.01 | 0.802747 | 4.843851e-49 | 2.391573e-46 |
| MsG0280006545.01 | MsG0680035876.01 | 0.821086 | 4.866797e-53 | 3.921111e-50 |
| MsG0280006545.01 | MsG0680035888.01 | 0.824957 | 6.092045e-54 | 5.477539e-51 |
| MsG0280006545.01 | MsG0780035937.01 | 0.819220 | 1.302333e-52 | 9.960861e-50 |
| MsG0280006545.01 | MsG0780036186.01 | 0.807614 | 4.637789e-50 | 2.594902e-47 |
| MsG0280006545.01 | MsG0780037093.01 | 0.825838 | 3.768385e-54 | 3.474300e-51 |
| MsG0280006545.01 | MsG0780038603.01 | 0.820853 | 5.508360e-53 | 4.409160e-50 |
| MsG0280006545.01 | MsG0780039369.01 | 0.803776 | 2.966462e-49 | 1.503705e-46 |
| MsG0280006545.01 | MsG0780040070.01 | 0.815722 | 7.993652e-52 | 5.554550e-49 |
| MsG0280006545.01 | MsG0780040569.01 | 0.837271 | 5.736142e-57 | 7.412198e-54 |
| MsG0280006545.01 | MsG0780041127.01 | 0.813441 | 2.555828e-51 | 1.669271e-48 |
| MsG0280006545.01 | MsG0780041223.01 | 0.807342 | 5.297806e-50 | 2.943424e-47 |
| MsG0280006545.01 | MsG0780041268.01 | 0.821977 | 3.029750e-53 | 2.502667e-50 |
| MsG0280006545.01 | MsG0780041423.01 | 0.808837 | 2.544735e-50 | 1.470233e-47 |
| MsG0280006545.01 | MsG0780041435.01 | 0.803276 | 3.766740e-49 | 1.884970e-46 |
| MsG0280006545.01 | MsG0780041482.01 | 0.803494 | 3.393863e-49 | 1.707981e-46 |
| MsG0280006545.01 | MsG0880041949.01 | 0.804958 | 1.682743e-49 | 8.793909e-47 |
| MsG0280006545.01 | MsG0880042033.01 | 0.821333 | 4.269085e-53 | 3.463064e-50 |
| MsG0280006545.01 | MsG0880042128.01 | 0.816381 | 5.695184e-52 | 4.029229e-49 |
| MsG0280006545.01 | MsG0880042760.01 | 0.844413 | 7.676720e-59 | 1.238348e-55 |
| MsG0280006545.01 | MsG0880042795.01 | 0.836857 | 7.315906e-57 | 9.336589e-54 |
| MsG0280006545.01 | MsG0880042978.01 | 0.825365 | 4.878844e-54 | 4.437522e-51 |
| MsG0280006545.01 | MsG0880042991.01 | 0.836333 | 9.952190e-57 | 1.250383e-53 |
| MsG0280006545.01 | MsG0880045294.01 | 0.812991 | 3.209212e-51 | 2.070419e-48 |
| MsG0280006545.01 | MsG0880045460.01 | 0.800574 | 1.352402e-48 | 6.318838e-46 |
| MsG0280006545.01 | MsG0880045656.01 | 0.835273 | 1.847077e-56 | 2.247797e-53 |
| MsG0280006545.01 | MsG0880045684.01 | 0.843532 | 1.322775e-58 | 2.075635e-55 |
| MsG0280006545.01 | MsG0880045838.01 | 0.820378 | 7.080747e-53 | 5.593693e-50 |
| MsG0280006545.01 | MsG0880046074.01 | 0.806658 | 7.392391e-50 | 4.034750e-47 |
| MsG0280006545.01 | MsG0880047212.01 | 0.812139 | 4.926342e-51 | 3.107152e-48 |
| MsG0280006545.01 | MsG0880047428.01 | 0.801865 | 7.358642e-49 | 3.552544e-46 |
| MsG0280006545.01 | MsG0880047743.01 | 0.815217 | 1.035452e-51 | 7.095126e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006545.01.T01 | MTR_2g010520 | 46.292 | 391 | 48 | 5 | 1 | 229 | 37 | 427 | 7.77e-74 | 230 |
| MsG0280006545.01.T01 | MTR_4g092610 | 38.875 | 391 | 73 | 8 | 1 | 229 | 37 | 423 | 2.78e-61 | 197 |
| MsG0280006545.01.T01 | MTR_2g010520 | 47.881 | 236 | 11 | 4 | 1 | 124 | 37 | 272 | 4.32e-49 | 163 |
| MsG0280006545.01.T01 | MTR_2g010520 | 53.804 | 184 | 17 | 2 | 1 | 116 | 37 | 220 | 3.30e-47 | 157 |
| MsG0280006545.01.T01 | MTR_3g111830 | 44.706 | 170 | 26 | 3 | 1 | 102 | 37 | 206 | 7.03e-32 | 121 |
| MsG0280006545.01.T01 | MTR_6g051860 | 32.353 | 170 | 47 | 2 | 1 | 102 | 105 | 274 | 1.39e-19 | 86.7 |
| MsG0280006545.01.T01 | MTR_6g052300 | 26.549 | 339 | 130 | 8 | 1 | 225 | 43 | 376 | 2.15e-19 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280006545.01.T01 | AT4G33700 | 35.476 | 389 | 88 | 7 | 1 | 229 | 37 | 422 | 3.00e-54 | 179 |
| MsG0280006545.01.T01 | AT2G14520 | 35.844 | 385 | 85 | 8 | 1 | 229 | 37 | 415 | 2.12e-51 | 172 |
| MsG0280006545.01.T01 | AT4G33700 | 35.417 | 336 | 80 | 6 | 28 | 229 | 7 | 339 | 7.86e-47 | 158 |
| MsG0280006545.01.T01 | AT2G14520 | 33.075 | 387 | 99 | 8 | 1 | 229 | 37 | 421 | 4.02e-42 | 148 |
| MsG0280006545.01.T01 | AT2G14520 | 33.075 | 387 | 99 | 8 | 1 | 229 | 37 | 421 | 4.02e-42 | 148 |
| MsG0280006545.01.T01 | AT4G33700 | 42.373 | 236 | 24 | 4 | 1 | 124 | 37 | 272 | 1.35e-41 | 143 |
| MsG0280006545.01.T01 | AT2G14520 | 51.748 | 143 | 14 | 3 | 28 | 115 | 7 | 149 | 2.07e-32 | 120 |
| MsG0280006545.01.T01 | AT5G52790 | 41.765 | 170 | 31 | 2 | 1 | 102 | 38 | 207 | 4.10e-30 | 115 |
| MsG0280006545.01.T01 | AT5G52790 | 41.765 | 170 | 31 | 2 | 1 | 102 | 38 | 207 | 4.10e-30 | 115 |
| MsG0280006545.01.T01 | AT5G52790 | 41.765 | 170 | 31 | 2 | 1 | 102 | 38 | 207 | 5.47e-30 | 115 |
| MsG0280006545.01.T01 | AT5G52790 | 41.765 | 170 | 31 | 2 | 1 | 102 | 38 | 207 | 6.56e-30 | 116 |
| MsG0280006545.01.T01 | AT5G52790 | 41.765 | 170 | 31 | 2 | 1 | 102 | 38 | 207 | 1.00e-29 | 115 |
| MsG0280006545.01.T01 | AT1G47330 | 42.353 | 170 | 30 | 2 | 1 | 102 | 37 | 206 | 9.16e-29 | 113 |
| MsG0280006545.01.T01 | AT4G14240 | 36.686 | 169 | 40 | 2 | 1 | 102 | 60 | 228 | 2.48e-24 | 100 |
| MsG0280006545.01.T01 | AT1G47330 | 46.154 | 117 | 21 | 1 | 28 | 102 | 9 | 125 | 2.71e-23 | 97.4 |
| MsG0280006545.01.T01 | AT4G14230 | 34.911 | 169 | 43 | 2 | 1 | 102 | 59 | 227 | 4.08e-23 | 97.4 |
| MsG0280006545.01.T01 | AT4G14240 | 37.500 | 160 | 42 | 3 | 1 | 102 | 60 | 219 | 1.59e-21 | 92.8 |
Find 33 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATATTTACTCAGATATTT+TGG | 0.135383 | 2:-3299241 | MsG0280006545.01.T01:CDS |
| TTCACAGGTACTTCCTCTTC+TGG | 0.171536 | 2:+3299947 | None:intergenic |
| ACAATTCTTGATCTAAAATT+AGG | 0.235766 | 2:+3299981 | None:intergenic |
| CTTGAGGTTCTTGCTAAATC+TGG | 0.290554 | 2:-3301506 | MsG0280006545.01.T01:CDS |
| GAATTAATGTCACAGAAATT+AGG | 0.319995 | 2:+3301080 | None:intergenic |
| TGATAGTCTTGTTGTTGCTT+GGG | 0.326445 | 2:-3301110 | MsG0280006545.01.T01:CDS |
| CTATTAGAATTACTTGCATT+TGG | 0.327515 | 2:+3299303 | None:intergenic |
| CTGATAGTCTTGTTGTTGCT+TGG | 0.333327 | 2:-3301111 | MsG0280006545.01.T01:CDS |
| TTCCTCAATCAGTTTGTTCC+CGG | 0.354210 | 2:-3300943 | MsG0280006545.01.T01:CDS |
| TCCCGGTATGGTTTAACAAT+TGG | 0.379526 | 2:-3300926 | MsG0280006545.01.T01:CDS |
| GATGAAACAACTATCATTGC+TGG | 0.392869 | 2:-3300446 | MsG0280006545.01.T01:CDS |
| TCACAGGTACTTCCTCTTCT+GGG | 0.393723 | 2:+3299948 | None:intergenic |
| CAATCAGTTTGTTCCCGGTA+TGG | 0.424173 | 2:-3300938 | MsG0280006545.01.T01:CDS |
| CACCAATTGTTAAACCATAC+CGG | 0.458969 | 2:+3300924 | None:intergenic |
| GCGTATGGTCACACTTTCAC+AGG | 0.473687 | 2:+3299932 | None:intergenic |
| AATGTGAGGGTGACTATTGA+TGG | 0.475170 | 2:-3299393 | MsG0280006545.01.T01:CDS |
| TTTGAGCCTTGTTGATCTTG+AGG | 0.487707 | 2:-3301522 | MsG0280006545.01.T01:CDS |
| AAAATATGCTAATCAAAAGC+AGG | 0.524817 | 2:+3298953 | None:intergenic |
| CATACAAGAACACGAACAAT+CGG | 0.530065 | 2:+3300890 | None:intergenic |
| ATGAAACAACTATCATTGCT+GGG | 0.540048 | 2:-3300445 | MsG0280006545.01.T01:CDS |
| GATAGTCTTGTTGTTGCTTG+GGG | 0.543298 | 2:-3301109 | MsG0280006545.01.T01:CDS |
| TACCGGGAACAAACTGATTG+AGG | 0.554385 | 2:+3300941 | None:intergenic |
| ACCAATTGTTAAACCATACC+GGG | 0.557041 | 2:+3300925 | None:intergenic |
| TGGTTTAACAATTGGTGCAA+CGG | 0.572976 | 2:-3300918 | MsG0280006545.01.T01:CDS |
| GTTAACTATTGACCCAGAAG+AGG | 0.573628 | 2:-3299960 | MsG0280006545.01.T01:CDS |
| GAACTCTCTGAGAAGACTGC+TGG | 0.576808 | 2:-3300416 | MsG0280006545.01.T01:intron |
| ATAGATTCAGTAAGAATGTG+AGG | 0.585485 | 2:-3299407 | MsG0280006545.01.T01:intron |
| ATGTGAGGGTGACTATTGAT+GGG | 0.597127 | 2:-3299392 | MsG0280006545.01.T01:CDS |
| TAGATTCAGTAAGAATGTGA+GGG | 0.619515 | 2:-3299406 | MsG0280006545.01.T01:CDS |
| TTTAACAATTGGTGCAACGG+TGG | 0.646196 | 2:-3300915 | MsG0280006545.01.T01:CDS |
| CAAGAACCTCAAGATCAACA+AGG | 0.659852 | 2:+3301516 | None:intergenic |
| TGAAACAACTATCATTGCTG+GGG | 0.681612 | 2:-3300444 | MsG0280006545.01.T01:CDS |
| TGTGAGGGTGACTATTGATG+GGG | 0.709411 | 2:-3299391 | MsG0280006545.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATTAAATTTATTGAC+AGG | - | Chr2:3300666-3300685 | MsG0280006545.01.T01:intron | 10.0% |
| !! | AATAGAAAATATTCATTTAT+AGG | + | Chr2:3300111-3300130 | None:intergenic | 10.0% |
| !! | AATTATTAAATTTATTGACA+GGG | - | Chr2:3300667-3300686 | MsG0280006545.01.T01:intron | 10.0% |
| !! | TTATTTATTTAATTATGTGT+AGG | - | Chr2:3301443-3301462 | MsG0280006545.01.T01:intron | 10.0% |
| !!! | AATTTTTTAAATTTGTAGTA+TGG | + | Chr2:3300651-3300670 | None:intergenic | 10.0% |
| !! | AAAACATCAAGAATTTATTA+TGG | + | Chr2:3299046-3299065 | None:intergenic | 15.0% |
| !! | CTTAATATTATTATTAAGCA+GGG | - | Chr2:3300235-3300254 | MsG0280006545.01.T01:intron | 15.0% |
| !! | TAACTTATAAAACACATATA+CGG | + | Chr2:3300979-3300998 | None:intergenic | 15.0% |
| !!! | AAATATTTACTCAGATATTT+TGG | - | Chr2:3301247-3301266 | MsG0280006545.01.T01:intron | 15.0% |
| !!! | TTTGTGTTTTTAATTTTTTG+TGG | - | Chr2:3299172-3299191 | MsG0280006545.01.T01:intron | 15.0% |
| !! | CAAAATTGTAGTATCAAAAA+TGG | + | Chr2:3300461-3300480 | None:intergenic | 20.0% |
| !! | GATATAAATCAAAACTTGAT+AGG | - | Chr2:3300131-3300150 | MsG0280006545.01.T01:intron | 20.0% |
| !! | GCAAGAAATTAAAATCAAAT+TGG | + | Chr2:3299706-3299725 | None:intergenic | 20.0% |
| !! | GCTTAATATTATTATTAAGC+AGG | - | Chr2:3300234-3300253 | MsG0280006545.01.T01:intron | 20.0% |
| !! | GCTTACAATTTATAAATCAT+TGG | + | Chr2:3300170-3300189 | None:intergenic | 20.0% |
| !! | TGAATATATATTCGAAATCA+CGG | + | Chr2:3299137-3299156 | None:intergenic | 20.0% |
| !! | TGTTACAAAATAAAATACCT+TGG | + | Chr2:3300588-3300607 | None:intergenic | 20.0% |
| !! | TTTATTTAATTATGTGTAGG+AGG | - | Chr2:3301446-3301465 | MsG0280006545.01.T01:intron | 20.0% |
| !!! | ACAATTCTTGATCTAAAATT+AGG | + | Chr2:3300510-3300529 | None:intergenic | 20.0% |
| !!! | ATACTACAATTTTGTATGAT+GGG | - | Chr2:3300467-3300486 | MsG0280006545.01.T01:CDS | 20.0% |
| !!! | ATTAATTCTTTTATTTGGTG+AGG | - | Chr2:3299423-3299442 | MsG0280006545.01.T01:intron | 20.0% |
| !!! | GTGACATTAATTCTTTTATT+TGG | - | Chr2:3299418-3299437 | MsG0280006545.01.T01:intron | 20.0% |
| !!! | GTGATTTTCTCAAATTTTAA+CGG | - | Chr2:3300919-3300938 | MsG0280006545.01.T01:CDS | 20.0% |
| !!! | TTTTAACGTCAAAATCATTT+AGG | - | Chr2:3299939-3299958 | MsG0280006545.01.T01:intron | 20.0% |
| ! | AAAACACTTGTAAATTTGCA+TGG | - | Chr2:3299807-3299826 | MsG0280006545.01.T01:intron | 25.0% |
| ! | AACAAGACTATCAGAAAAAT+TGG | + | Chr2:3299371-3299390 | None:intergenic | 25.0% |
| ! | ATAAGTCCAATGATATTTGT+AGG | + | Chr2:3300319-3300338 | None:intergenic | 25.0% |
| ! | ATATTCATTTATAGGAGTCA+TGG | + | Chr2:3300103-3300122 | None:intergenic | 25.0% |
| ! | ATATTGAATGAGTTCCAAAA+GGG | - | Chr2:3300716-3300735 | MsG0280006545.01.T01:intron | 25.0% |
| ! | CTATTAGAATTACTTGCATT+TGG | + | Chr2:3301188-3301207 | None:intergenic | 25.0% |
| ! | GAATTAATGTCACAGAAATT+AGG | + | Chr2:3299411-3299430 | None:intergenic | 25.0% |
| ! | TATATTGAATGAGTTCCAAA+AGG | - | Chr2:3300715-3300734 | MsG0280006545.01.T01:intron | 25.0% |
| ! | TCATTCAATATATCGTACAA+TGG | + | Chr2:3300707-3300726 | None:intergenic | 25.0% |
| !! | AGTTGTTGGATTATTTGTTA+GGG | - | Chr2:3299749-3299768 | MsG0280006545.01.T01:intron | 25.0% |
| !! | CTTCAATTTTGCATCAATTT+TGG | - | Chr2:3300376-3300395 | MsG0280006545.01.T01:intron | 25.0% |
| !! | GATACTACAATTTTGTATGA+TGG | - | Chr2:3300466-3300485 | MsG0280006545.01.T01:CDS | 25.0% |
| !! | TCATATTAGTCCTTTTGAAT+CGG | + | Chr2:3299912-3299931 | None:intergenic | 25.0% |
| !! | TTTTGCTTCATTGATCTATA+TGG | + | Chr2:3300404-3300423 | None:intergenic | 25.0% |
| !!! | AGATGTTGATTTTTTACAAC+AGG | + | Chr2:3299215-3299234 | None:intergenic | 25.0% |
| !!! | GATTATCTTTTGATTTTCTC+AGG | - | Chr2:3299340-3299359 | MsG0280006545.01.T01:CDS | 25.0% |
| !!! | TCAGATATTTTGGAAATTGA+TGG | - | Chr2:3301257-3301276 | MsG0280006545.01.T01:intron | 25.0% |
| AAATATCATTGGACTTATCC+TGG | - | Chr2:3300321-3300340 | MsG0280006545.01.T01:intron | 30.0% | |
| AACACATTGTATTGTATACC+AGG | + | Chr2:3300342-3300361 | None:intergenic | 30.0% | |
| ACAAAATCATCGTAACATTG+TGG | + | Chr2:3299106-3299125 | None:intergenic | 30.0% | |
| AGCTGTAGGAATAATTACAA+TGG | - | Chr2:3301312-3301331 | MsG0280006545.01.T01:intron | 30.0% | |
| ATAAAACACATATACGGACA+CGG | + | Chr2:3300973-3300992 | None:intergenic | 30.0% | |
| ATAGATTCAGTAAGAATGTG+AGG | - | Chr2:3301081-3301100 | MsG0280006545.01.T01:CDS | 30.0% | |
| ATGAAACAACTATCATTGCT+GGG | - | Chr2:3300043-3300062 | MsG0280006545.01.T01:intron | 30.0% | |
| ATGACACTATATTGGAGAAA+GGG | - | Chr2:3300263-3300282 | MsG0280006545.01.T01:intron | 30.0% | |
| CACAACACAATTTCAACAAA+AGG | + | Chr2:3301053-3301072 | None:intergenic | 30.0% | |
| CAGTTGTTGGATTATTTGTT+AGG | - | Chr2:3299748-3299767 | MsG0280006545.01.T01:intron | 30.0% | |
| CTAACAAATAATCCAACAAC+TGG | + | Chr2:3299750-3299769 | None:intergenic | 30.0% | |
| GACCAACAACAACAATAATT+TGG | + | Chr2:3299984-3300003 | None:intergenic | 30.0% | |
| TAGATTCAGTAAGAATGTGA+GGG | - | Chr2:3301082-3301101 | MsG0280006545.01.T01:CDS | 30.0% | |
| ! | CTACTTCTAGAAGCAAAAAA+TGG | - | Chr2:3301219-3301238 | MsG0280006545.01.T01:intron | 30.0% |
| ! | GACCAAATTATTGTTGTTGT+TGG | - | Chr2:3299979-3299998 | MsG0280006545.01.T01:CDS | 30.0% |
| !! | ACTAAATTTGCCGATTCAAA+AGG | - | Chr2:3299899-3299918 | MsG0280006545.01.T01:intron | 30.0% |
| !! | TTCTCAAATTTTAACGGTGT+CGG | - | Chr2:3300925-3300944 | MsG0280006545.01.T01:CDS | 30.0% |
| !! | TTTTTCAACACTTTCTCTTG+AGG | + | Chr2:3301134-3301153 | None:intergenic | 30.0% |
| ACCAATTGTTAAACCATACC+GGG | + | Chr2:3299566-3299585 | None:intergenic | 35.0% | |
| CACCAATTGTTAAACCATAC+CGG | + | Chr2:3299567-3299586 | None:intergenic | 35.0% | |
| CATACAAGAACACGAACAAT+CGG | + | Chr2:3299601-3299620 | None:intergenic | 35.0% | |
| CTTACCAGTGCAATTATTGT+TGG | + | Chr2:3300797-3300816 | None:intergenic | 35.0% | |
| GATGAAACAACTATCATTGC+TGG | - | Chr2:3300042-3300061 | MsG0280006545.01.T01:intron | 35.0% | |
| GATGACACTATATTGGAGAA+AGG | - | Chr2:3300262-3300281 | MsG0280006545.01.T01:intron | 35.0% | |
| TAGGCTCCTCATAATAAACA+GGG | + | Chr2:3300300-3300319 | None:intergenic | 35.0% | |
| TATTATGGACAGAACAGTAC+CGG | + | Chr2:3299031-3299050 | None:intergenic | 35.0% | |
| TCTTCCAACAATAATTGCAC+TGG | - | Chr2:3300790-3300809 | MsG0280006545.01.T01:intron | 35.0% | |
| TGAAACAACTATCATTGCTG+GGG | - | Chr2:3300044-3300063 | MsG0280006545.01.T01:intron | 35.0% | |
| TGAATTTAGATGTACCTCCA+TGG | + | Chr2:3299273-3299292 | None:intergenic | 35.0% | |
| TGGTTTAACAATTGGTGCAA+CGG | - | Chr2:3299570-3299589 | MsG0280006545.01.T01:intron | 35.0% | |
| TTGTGTTGTATTCCAGTTGT+TGG | - | Chr2:3299735-3299754 | MsG0280006545.01.T01:intron | 35.0% | |
| ! | ATACCTTGGTATTTTGCGTA+TGG | + | Chr2:3300574-3300593 | None:intergenic | 35.0% |
| ! | GGGATTTGATGACACTATAT+TGG | - | Chr2:3300255-3300274 | MsG0280006545.01.T01:intron | 35.0% |
| ! | TATATGTGTTGTTGTCGTGT+CGG | + | Chr2:3300884-3300903 | None:intergenic | 35.0% |
| ! | TGTAATTGAAGAGCTTTTGC+AGG | - | Chr2:3301339-3301358 | MsG0280006545.01.T01:intron | 35.0% |
| ! | TGTTGTTGGTCCATTGTTTT+AGG | - | Chr2:3299993-3300012 | MsG0280006545.01.T01:intron | 35.0% |
| !! | TGATAGTCTTGTTGTTGCTT+GGG | - | Chr2:3299378-3299397 | MsG0280006545.01.T01:CDS | 35.0% |
| !!! | CAAAAGCAGGTTTAGTTTTG+TGG | + | Chr2:3301525-3301544 | None:intergenic | 35.0% |
| !!! | TTCTTCTTTTCAGGTAGCTT+TGG | + | Chr2:3301293-3301312 | None:intergenic | 35.0% |
| AATGTGAGGGTGACTATTGA+TGG | - | Chr2:3301095-3301114 | MsG0280006545.01.T01:CDS | 40.0% | |
| ACCTGAAAAGAAGAAGCTGT+AGG | - | Chr2:3301298-3301317 | MsG0280006545.01.T01:intron | 40.0% | |
| ATGTGAGGGTGACTATTGAT+GGG | - | Chr2:3301096-3301115 | MsG0280006545.01.T01:CDS | 40.0% | |
| CAAAACTTGATAGGTGAGTG+AGG | - | Chr2:3300140-3300159 | MsG0280006545.01.T01:intron | 40.0% | |
| CAAGAACCTCAAGATCAACA+AGG | + | Chr2:3298975-3298994 | None:intergenic | 40.0% | |
| CAGAGTCCCTGTTTATTATG+AGG | - | Chr2:3300291-3300310 | MsG0280006545.01.T01:intron | 40.0% | |
| CCTCAAGATCAAAAACATGC+CGG | - | Chr2:3299009-3299028 | MsG0280006545.01.T01:CDS | 40.0% | |
| CGATTGTTCGTGTTCTTGTA+TGG | - | Chr2:3299599-3299618 | MsG0280006545.01.T01:intron | 40.0% | |
| CTTGAGGTTCTTGCTAAATC+TGG | - | Chr2:3298982-3299001 | MsG0280006545.01.T01:CDS | 40.0% | |
| GAGGAGCCTACAAATATCAT+TGG | - | Chr2:3300310-3300329 | MsG0280006545.01.T01:intron | 40.0% | |
| GTAGGCTCCTCATAATAAAC+AGG | + | Chr2:3300301-3300320 | None:intergenic | 40.0% | |
| GTGAGACATTTGACAAGACA+GGG | - | Chr2:3300761-3300780 | MsG0280006545.01.T01:intron | 40.0% | |
| GTTAACTATTGACCCAGAAG+AGG | - | Chr2:3300528-3300547 | MsG0280006545.01.T01:intron | 40.0% | |
| TCCCGGTATGGTTTAACAAT+TGG | - | Chr2:3299562-3299581 | MsG0280006545.01.T01:intron | 40.0% | |
| TCGTACAATGGCATCATTTC+TGG | + | Chr2:3300695-3300714 | None:intergenic | 40.0% | |
| TGACCATACGCAAAATACCA+AGG | - | Chr2:3300568-3300587 | MsG0280006545.01.T01:intron | 40.0% | |
| TGTATCATGCACCTTGCTAA+TGG | + | Chr2:3299645-3299664 | None:intergenic | 40.0% | |
| TGTGAGACATTTGACAAGAC+AGG | - | Chr2:3300760-3300779 | MsG0280006545.01.T01:intron | 40.0% | |
| TTTAACAATTGGTGCAACGG+TGG | - | Chr2:3299573-3299592 | MsG0280006545.01.T01:intron | 40.0% | |
| ! | CTGTTGCTTATCCATTAGCA+AGG | - | Chr2:3299631-3299650 | MsG0280006545.01.T01:intron | 40.0% |
| ! | CTTGCTAATGGATAAGCAAC+AGG | + | Chr2:3299633-3299652 | None:intergenic | 40.0% |
| ! | TCCTACAGCTTCTTCTTTTC+AGG | + | Chr2:3301302-3301321 | None:intergenic | 40.0% |
| ! | TTCCTCAATCAGTTTGTTCC+CGG | - | Chr2:3299545-3299564 | MsG0280006545.01.T01:intron | 40.0% |
| !! | CTGATAGTCTTGTTGTTGCT+TGG | - | Chr2:3299377-3299396 | MsG0280006545.01.T01:CDS | 40.0% |
| !! | GATAGTCTTGTTGTTGCTTG+GGG | - | Chr2:3299379-3299398 | MsG0280006545.01.T01:CDS | 40.0% |
| !! | TTCTCAGATTAGCCTTGTTC+TGG | - | Chr2:3300834-3300853 | MsG0280006545.01.T01:intron | 40.0% |
| !! | TTTGAGCCTTGTTGATCTTG+AGG | - | Chr2:3298966-3298985 | MsG0280006545.01.T01:CDS | 40.0% |
| !!! | TTGGTCCATTGTTTTAGGCT+GGG | - | Chr2:3299998-3300017 | MsG0280006545.01.T01:intron | 40.0% |
| AATTTGCAATGCAGCAGCCA+TGG | - | Chr2:3299253-3299272 | MsG0280006545.01.T01:CDS | 45.0% | |
| CAACAACAGCCATGTGACTA+TGG | + | Chr2:3300742-3300761 | None:intergenic | 45.0% | |
| CCTTTCCCAGCCTAAAACAA+TGG | + | Chr2:3300006-3300025 | None:intergenic | 45.0% | |
| TACCGGGAACAAACTGATTG+AGG | + | Chr2:3299550-3299569 | None:intergenic | 45.0% | |
| TCACAGGTACTTCCTCTTCT+GGG | + | Chr2:3300543-3300562 | None:intergenic | 45.0% | |
| TGTGAGGGTGACTATTGATG+GGG | - | Chr2:3301097-3301116 | MsG0280006545.01.T01:CDS | 45.0% | |
| TTCACAGGTACTTCCTCTTC+TGG | + | Chr2:3300544-3300563 | None:intergenic | 45.0% | |
| ! | CAATCAGTTTGTTCCCGGTA+TGG | - | Chr2:3299550-3299569 | MsG0280006545.01.T01:intron | 45.0% |
| !! | AGATTAGCCTTGTTCTGGTG+TGG | - | Chr2:3300839-3300858 | MsG0280006545.01.T01:intron | 45.0% |
| !! | CCGGCATGTTTTTGATCTTG+AGG | + | Chr2:3299012-3299031 | None:intergenic | 45.0% |
| !! | GATTAGCCTTGTTCTGGTGT+GGG | - | Chr2:3300840-3300859 | MsG0280006545.01.T01:intron | 45.0% |
| !!! | CCATTGTTTTAGGCTGGGAA+AGG | - | Chr2:3300003-3300022 | MsG0280006545.01.T01:intron | 45.0% |
| !!! | GTTGGTCCATTGTTTTAGGC+TGG | - | Chr2:3299997-3300016 | MsG0280006545.01.T01:intron | 45.0% |
| !!! | TTGTTTTAGGCTGGGAAAGG+TGG | - | Chr2:3300006-3300025 | MsG0280006545.01.T01:intron | 45.0% |
| !! | TAATTAAATAAATAATAGAT+AGG | + | Chr2:3301438-3301457 | None:intergenic | 5.0% |
| CCAAAAGGGCCATAGTCACA+TGG | - | Chr2:3300730-3300749 | MsG0280006545.01.T01:intron | 50.0% | |
| GCGTATGGTCACACTTTCAC+AGG | + | Chr2:3300559-3300578 | None:intergenic | 50.0% | |
| ! | CCATGTGACTATGGCCCTTT+TGG | + | Chr2:3300733-3300752 | None:intergenic | 50.0% |
| ! | GAACTCTCTGAGAAGACTGC+TGG | - | Chr2:3300072-3300091 | MsG0280006545.01.T01:intron | 50.0% |
| CAGTGTCCCACACCAGAACA+AGG | + | Chr2:3300849-3300868 | None:intergenic | 55.0% | |
| TTGCAATGCAGCAGCCATGG+AGG | - | Chr2:3299256-3299275 | MsG0280006545.01.T01:CDS | 55.0% | |
| ACACGGACACGACACGAACG+CGG | + | Chr2:3300956-3300975 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 3298961 | 3301549 | 3298961 | ID=MsG0280006545.01;Name=MsG0280006545.01 |
| Chr2 | mRNA | 3298961 | 3301549 | 3298961 | ID=MsG0280006545.01.T01;Parent=MsG0280006545.01;Name=MsG0280006545.01.T01;_AED=0.32;_eAED=0.41;_QI=0|0|0|1|1|1|7|0|229 |
| Chr2 | exon | 3301480 | 3301549 | 3301480 | ID=MsG0280006545.01.T01:exon:1649;Parent=MsG0280006545.01.T01 |
| Chr2 | exon | 3301066 | 3301148 | 3301066 | ID=MsG0280006545.01.T01:exon:1648;Parent=MsG0280006545.01.T01 |
| Chr2 | exon | 3300895 | 3300969 | 3300895 | ID=MsG0280006545.01.T01:exon:1647;Parent=MsG0280006545.01.T01 |
| Chr2 | exon | 3300417 | 3300495 | 3300417 | ID=MsG0280006545.01.T01:exon:1646;Parent=MsG0280006545.01.T01 |
| Chr2 | exon | 3299944 | 3300010 | 3299944 | ID=MsG0280006545.01.T01:exon:1645;Parent=MsG0280006545.01.T01 |
| Chr2 | exon | 3299195 | 3299425 | 3299195 | ID=MsG0280006545.01.T01:exon:1644;Parent=MsG0280006545.01.T01 |
| Chr2 | exon | 3298961 | 3299045 | 3298961 | ID=MsG0280006545.01.T01:exon:1643;Parent=MsG0280006545.01.T01 |
| Chr2 | CDS | 3301480 | 3301549 | 3301480 | ID=MsG0280006545.01.T01:cds;Parent=MsG0280006545.01.T01 |
| Chr2 | CDS | 3301066 | 3301148 | 3301066 | ID=MsG0280006545.01.T01:cds;Parent=MsG0280006545.01.T01 |
| Chr2 | CDS | 3300895 | 3300969 | 3300895 | ID=MsG0280006545.01.T01:cds;Parent=MsG0280006545.01.T01 |
| Chr2 | CDS | 3300417 | 3300495 | 3300417 | ID=MsG0280006545.01.T01:cds;Parent=MsG0280006545.01.T01 |
| Chr2 | CDS | 3299944 | 3300010 | 3299944 | ID=MsG0280006545.01.T01:cds;Parent=MsG0280006545.01.T01 |
| Chr2 | CDS | 3299195 | 3299425 | 3299195 | ID=MsG0280006545.01.T01:cds;Parent=MsG0280006545.01.T01 |
| Chr2 | CDS | 3298961 | 3299045 | 3298961 | ID=MsG0280006545.01.T01:cds;Parent=MsG0280006545.01.T01 |
| Gene Sequence |
| Protein sequence |
