AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880043167.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043167.01.T01 MTR_8g030890 77.228 303 9 2 19 290 175 448 3.35e-162 459
MsG0880043167.01.T01 MTR_1g100950 52.063 315 88 5 6 287 162 446 4.79e-100 300
MsG0880043167.01.T01 MTR_1g100950 52.063 315 88 5 6 287 202 486 8.07e-100 301
MsG0880043167.01.T01 MTR_1g100950 54.206 214 37 3 6 187 162 346 7.11e-68 215
MsG0880043167.01.T01 MTR_3g065480 41.216 296 102 9 20 276 175 437 1.74e-64 209
MsG0880043167.01.T01 MTR_1g100950 62.025 79 24 2 13 85 169 247 1.04e-23 97.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880043167.01.T01 AT4G00500 49.211 317 93 7 6 287 165 448 1.10e-92 282
MsG0880043167.01.T01 AT4G00500 49.211 317 93 7 6 287 165 448 1.10e-92 282
MsG0880043167.01.T01 AT3G49050 46.012 326 90 5 20 288 177 473 1.23e-87 270
MsG0880043167.01.T01 AT5G37710 39.867 301 102 7 20 285 175 431 1.99e-62 203
MsG0880043167.01.T01 AT5G37710 47.000 200 45 4 20 187 175 345 1.56e-50 170

Find 76 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCATAATCGCGACAAAT+TGG 0.195008 8:-20043798 MsG0880043167.01.T01:CDS
CAACTTATATGTTGACGTTA+TGG 0.297403 8:-20043867 MsG0880043167.01.T01:CDS
AACTTATATGTTGACGTTAT+GGG 0.312048 8:-20043866 MsG0880043167.01.T01:CDS
CTTCATAATCGCGACAAATT+GGG 0.318156 8:-20043797 MsG0880043167.01.T01:CDS
CCGATGTATGTCTCTCAATT+TGG 0.330984 8:-20043732 MsG0880043167.01.T01:CDS
GAAGATTTCCACCCATTGTT+AGG 0.336238 8:-20041335 MsG0880043167.01.T01:CDS
GCTAGAGAAAGATCGGAATA+TGG 0.341114 8:-20040236 MsG0880043167.01.T01:CDS
ATTGACGCTGAGGAAGATTC+TGG 0.367509 8:-20040070 MsG0880043167.01.T01:CDS
TGGGACATTCACTTGGTGCT+GGG 0.373748 8:-20043847 MsG0880043167.01.T01:CDS
TTGTCGAGCGAAAGCCCTTC+AGG 0.380817 8:-20042308 MsG0880043167.01.T01:intron
CATACAGACGCCTTGGGTCT+TGG 0.381758 8:+20042352 None:intergenic
ATGGGACATTCACTTGGTGC+TGG 0.383813 8:-20043848 MsG0880043167.01.T01:CDS
CCTTCGGAGGGCAGTTGCTT+TGG 0.387374 8:-20040140 MsG0880043167.01.T01:CDS
CTACTGACCATGCCATCCTT+TGG 0.397629 8:-20041257 MsG0880043167.01.T01:CDS
GCATACTCACCTTCCTCATA+TGG 0.405824 8:-20040106 MsG0880043167.01.T01:CDS
AAGTCTACGTCACTAAATTA+CGG 0.411644 8:-20041486 MsG0880043167.01.T01:intron
TTCATGAAATGTTCCATATG+AGG 0.417496 8:+20040093 None:intergenic
ATTGTTCATAATAGAACAAC+TGG 0.420202 8:-20041565 MsG0880043167.01.T01:intron
TTCACTTGGTGCTGGGGTGG+TGG 0.432423 8:-20043840 MsG0880043167.01.T01:CDS
CGTGGACGACACAGGTCATA+TGG 0.445994 8:-20039966 MsG0880043167.01.T01:CDS
CGGCAGAGCAAAAGATGGTT+AGG 0.467187 8:-20040207 MsG0880043167.01.T01:CDS
TTCATAATCGCGACAAATTG+GGG 0.469907 8:-20043796 MsG0880043167.01.T01:CDS
GGGACATTCACTTGGTGCTG+GGG 0.479013 8:-20043846 MsG0880043167.01.T01:CDS
ACATTCACTTGGTGCTGGGG+TGG 0.482845 8:-20043843 MsG0880043167.01.T01:CDS
GCTTACATCGAGAGCCCGTT+GGG 0.485898 8:+20041221 None:intergenic
ATAACAAACGATCAGAAAGT+TGG 0.487511 8:-20040015 MsG0880043167.01.T01:CDS
CGAGAAAAGACTTCGGTCGC+TGG 0.493640 8:-20041526 MsG0880043167.01.T01:CDS
AGATCGGAATATGGAGATCC+CGG 0.498672 8:-20040227 MsG0880043167.01.T01:CDS
CATAACGTCAACATATAAGT+TGG 0.499525 8:+20043868 None:intergenic
GAAAGTTGGAATGAATTTGT+CGG 0.506851 8:-20040001 MsG0880043167.01.T01:CDS
GATTGAGAAGGAATCCCAAC+GGG 0.509870 8:-20041235 MsG0880043167.01.T01:CDS
AAGAGTACCGTGCAGCCCTT+CGG 0.515446 8:-20040156 MsG0880043167.01.T01:CDS
CCAGGTGCATACAGACGCCT+TGG 0.522285 8:+20042345 None:intergenic
GACGTTATGGGACATTCACT+TGG 0.534376 8:-20043854 MsG0880043167.01.T01:CDS
GGTACTGCTGTCCTAACAAT+GGG 0.534930 8:+20041324 None:intergenic
AGCTTACATCGAGAGCCCGT+TGG 0.546689 8:+20041220 None:intergenic
GATCAACTCTATCGTACTAC+AGG 0.548222 8:-20043690 MsG0880043167.01.T01:intron
AGTTAATGCTAGAGAAAGAT+CGG 0.550817 8:-20040243 MsG0880043167.01.T01:CDS
CTGCCCTCCGAAGGGCTGCA+CGG 0.552923 8:+20040149 None:intergenic
CAGGTGCATACAGACGCCTT+GGG 0.556377 8:+20042346 None:intergenic
AGTACCGTGCAGCCCTTCGG+AGG 0.557733 8:-20040153 MsG0880043167.01.T01:CDS
CATACATCGGGCAGGAGCAA+TGG 0.558494 8:+20043745 None:intergenic
TGCCATCCTTTGGATTGAGA+AGG 0.562134 8:-20041247 MsG0880043167.01.T01:CDS
ATGCGGAATGGGAGGTTCTG+AGG 0.566241 8:-20043909 None:intergenic
TGATCAAACCTTCCATCGAC+AGG 0.566884 8:+20041303 None:intergenic
CCAAAGCAACTGCCCTCCGA+AGG 0.567097 8:+20040140 None:intergenic
CCAAGGCGTCTGTATGCACC+TGG 0.569450 8:-20042345 MsG0880043167.01.T01:CDS
CTTAAAGGATACTTGCACAC+TGG 0.573680 8:-20042388 MsG0880043167.01.T01:intron
TTCCTTCTCAATCCAAAGGA+TGG 0.575356 8:+20041245 None:intergenic
GGGATTCCTTCTCAATCCAA+AGG 0.576786 8:+20041241 None:intergenic
TTGAGAGACATACATCGGGC+AGG 0.577619 8:+20043737 None:intergenic
CAAATTGAGAGACATACATC+GGG 0.583019 8:+20043733 None:intergenic
GAGGAAGGTGAGTATGCTTG+AGG 0.590075 8:+20040112 None:intergenic
GAAGATTCTGGAAGATCTAG+TGG 0.592068 8:-20040058 MsG0880043167.01.T01:CDS
CAAAGCAACTGCCCTCCGAA+GGG 0.592141 8:+20040141 None:intergenic
AGGTACTGCTGTCCTAACAA+TGG 0.595170 8:+20041323 None:intergenic
TGATCGTTTGTTATGAGACA+AGG 0.595396 8:+20040024 None:intergenic
TGTCGGACGCATGTTTGACG+TGG 0.597332 8:-20039984 MsG0880043167.01.T01:CDS
TCTCAATCCAAAGGATGGCA+TGG 0.607183 8:+20041250 None:intergenic
CAGCAGTACCTGTCGATGGA+AGG 0.608153 8:-20041311 MsG0880043167.01.T01:CDS
GTACCGTGCAGCCCTTCGGA+GGG 0.611312 8:-20040152 MsG0880043167.01.T01:CDS
GATCCCGGCAGAGCAAAAGA+TGG 0.617790 8:-20040212 MsG0880043167.01.T01:CDS
TGAAATGTTCCATATGAGGA+AGG 0.619523 8:+20040097 None:intergenic
ACTGCTGTCCTAACAATGGG+TGG 0.627208 8:+20041327 None:intergenic
ATGTTTGACGTGGACGACAC+AGG 0.631845 8:-20039974 MsG0880043167.01.T01:CDS
CCAAATTGAGAGACATACAT+CGG 0.633196 8:+20043732 None:intergenic
ATTTCATGAAATTGACGCTG+AGG 0.635643 8:-20040080 MsG0880043167.01.T01:CDS
ACAATGTGATAGAGACGACC+AGG 0.636901 8:+20042327 None:intergenic
AGAAGAAACTCCAAGACCCA+AGG 0.640073 8:-20042362 MsG0880043167.01.T01:CDS
CAATTTGGCTGTAAGATATG+CGG 0.643247 8:-20043717 MsG0880043167.01.T01:CDS
AGGACAGCAGTACCTGTCGA+TGG 0.651084 8:-20041315 MsG0880043167.01.T01:CDS
GGATTGAGAAGGAATCCCAA+CGG 0.658153 8:-20041236 MsG0880043167.01.T01:CDS
CTCCCTGCGAGAAAAGACTT+CGG 0.658235 8:-20041533 MsG0880043167.01.T01:CDS
GAGAGCATACTGTACCTGAA+GGG 0.660939 8:+20042294 None:intergenic
GGTTCTGAGGAAGTTAATAG+CGG 0.704402 8:-20043896 MsG0880043167.01.T01:CDS
ATTGGGGATACAGAGAGACA+AGG 0.732263 8:-20043780 MsG0880043167.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACAAATTTAAACAATTTATA+TGG + Chr8:20043444-20043463 None:intergenic 10.0%
!! TATAAAATATAAATAGAAAC+TGG + Chr8:20042863-20042882 None:intergenic 10.0%
!!! AATGTTAAAATTCATAATTT+TGG + Chr8:20041678-20041697 None:intergenic 10.0%
!!! TTTTTTTTCATAATAAGTTT+TGG - Chr8:20041892-20041911 MsG0880043167.01.T01:intron 10.0%
!! AATTTCAACAATAATTTAGA+CGG - Chr8:20043121-20043140 MsG0880043167.01.T01:intron 15.0%
!! ACTCTAGTAAAAATAAAAAT+GGG - Chr8:20042192-20042211 MsG0880043167.01.T01:intron 15.0%
!! AGTAAGTTTATAATAACAAA+AGG + Chr8:20040191-20040210 None:intergenic 15.0%
!! TACTCTAGTAAAAATAAAAA+TGG - Chr8:20042191-20042210 MsG0880043167.01.T01:intron 15.0%
!!! TAATTGATAACATGTATATT+TGG + Chr8:20043262-20043281 None:intergenic 15.0%
!! AAATTAATTGTTGATGTCTT+CGG + Chr8:20040482-20040501 None:intergenic 20.0%
!! ACACATTGAATTCAATAATT+TGG + Chr8:20042433-20042452 None:intergenic 20.0%
!! AGATGCAAATTAATGAATAA+TGG + Chr8:20040973-20040992 None:intergenic 20.0%
!! ATGAAAGAAATAACAATGAT+TGG + Chr8:20041344-20041363 None:intergenic 20.0%
!! GTTAATACAGTTTAAATACA+TGG + Chr8:20043422-20043441 None:intergenic 20.0%
!! TAGTTAATATGTTCATTGAA+TGG - Chr8:20043163-20043182 MsG0880043167.01.T01:intron 20.0%
!! TTTAATTAAAGTGACAGTAA+TGG - Chr8:20041116-20041135 MsG0880043167.01.T01:intron 20.0%
!!! AATCATTGTTATTTCTTTCA+TGG - Chr8:20041343-20041362 MsG0880043167.01.T01:CDS 20.0%
!!! AATTTTTCATGAATATGCAT+TGG - Chr8:20041282-20041301 MsG0880043167.01.T01:CDS 20.0%
!!! ATATGATATTCTTTTTTCCT+CGG - Chr8:20041008-20041027 MsG0880043167.01.T01:intron 20.0%
!!! ATTTTTTTTTCTTCTCAAGT+TGG - Chr8:20041932-20041951 MsG0880043167.01.T01:intron 20.0%
!!! TTTAATTCATTTTGAAACTC+TGG - Chr8:20042721-20042740 MsG0880043167.01.T01:intron 20.0%
! AAAAATAAAAATGGGTCCAT+AGG - Chr8:20042200-20042219 MsG0880043167.01.T01:intron 25.0%
! AAACTTATACAACTTTCCTA+TGG + Chr8:20042219-20042238 None:intergenic 25.0%
! AACATGATGAATTTGATCTA+AGG - Chr8:20041763-20041782 MsG0880043167.01.T01:intron 25.0%
! AACTTATATGTTGACGTTAT+GGG - Chr8:20039979-20039998 MsG0880043167.01.T01:CDS 25.0%
! ACATGATGAATTTGATCTAA+GGG - Chr8:20041764-20041783 MsG0880043167.01.T01:intron 25.0%
! ACTTAGTTTAATTACGCTTA+AGG + Chr8:20040690-20040709 None:intergenic 25.0%
! AGAATATCATATTAACCAGT+TGG + Chr8:20041000-20041019 None:intergenic 25.0%
! ATAAAAAACTGAACTGAAGT+CGG + Chr8:20040446-20040465 None:intergenic 25.0%
! ATTGTTCATAATAGAACAAC+TGG - Chr8:20042280-20042299 MsG0880043167.01.T01:intron 25.0%
! CTAAAATCTGTGAATAAATC+AGG + Chr8:20041047-20041066 None:intergenic 25.0%
! CTTAGTTTAATTACGCTTAA+GGG + Chr8:20040689-20040708 None:intergenic 25.0%
! GTTAATGATGTTCAAAATCA+TGG - Chr8:20043320-20043339 MsG0880043167.01.T01:intron 25.0%
! TAAGAAGAGTCAATTAATTG+CGG - Chr8:20041737-20041756 MsG0880043167.01.T01:intron 25.0%
! TGAGAAGAAAAAAAAATCAC+AGG + Chr8:20041929-20041948 None:intergenic 25.0%
! TTCATTGAAACATTTAAGTG+TGG + Chr8:20042963-20042982 None:intergenic 25.0%
! TTGATAGATAAGAAATCATG+AGG + Chr8:20040301-20040320 None:intergenic 25.0%
!! ATTGAAAATCTTATTTCCTG+TGG + Chr8:20041265-20041284 None:intergenic 25.0%
!! CCAATATTTGTTGGAAAATA+AGG - Chr8:20042775-20042794 MsG0880043167.01.T01:intron 25.0%
!! CTGATTTATTCACAGATTTT+AGG - Chr8:20041045-20041064 MsG0880043167.01.T01:intron 25.0%
!! TTCATAAGATTTTTGCTGAA+AGG - Chr8:20041834-20041853 MsG0880043167.01.T01:intron 25.0%
!!! AGATTTTAGGATTTGTTGAA+TGG - Chr8:20041058-20041077 MsG0880043167.01.T01:intron 25.0%
!!! CATAATAAGTTTTGGTCATT+TGG - Chr8:20041900-20041919 MsG0880043167.01.T01:intron 25.0%
!!! CCTTATTTTCCAACAAATAT+TGG + Chr8:20042778-20042797 None:intergenic 25.0%
!!! TTGTTTTTTTTAACAGCATG+TGG - Chr8:20043048-20043067 MsG0880043167.01.T01:intron 25.0%
AAGTCTACGTCACTAAATTA+CGG - Chr8:20042359-20042378 MsG0880043167.01.T01:CDS 30.0%
AAGTGCAAACCAATATTTGT+TGG - Chr8:20042766-20042785 MsG0880043167.01.T01:intron 30.0%
AGCTTAAAGCTGTTAAGTTT+AGG + Chr8:20040810-20040829 None:intergenic 30.0%
AGTGTCAATGCTTCATAATT+AGG - Chr8:20042159-20042178 MsG0880043167.01.T01:intron 30.0%
AGTTAATGCTAGAGAAAGAT+CGG - Chr8:20043602-20043621 MsG0880043167.01.T01:intron 30.0%
ATAACAAACGATCAGAAAGT+TGG - Chr8:20043830-20043849 MsG0880043167.01.T01:CDS 30.0%
CAACTTATATGTTGACGTTA+TGG - Chr8:20039978-20039997 MsG0880043167.01.T01:CDS 30.0%
CATAACGTCAACATATAAGT+TGG + Chr8:20039980-20039999 None:intergenic 30.0%
CATGATGAATTTGATCTAAG+GGG - Chr8:20041765-20041784 MsG0880043167.01.T01:intron 30.0%
GAAAGTTGGAATGAATTTGT+CGG - Chr8:20043844-20043863 MsG0880043167.01.T01:CDS 30.0%
GATGATTCATTGATACAACA+GGG + Chr8:20043383-20043402 None:intergenic 30.0%
GTTCAGCTGATATGATAAAT+AGG + Chr8:20040926-20040945 None:intergenic 30.0%
TCAATGAAGTTATTCATGCA+GGG - Chr8:20042975-20042994 MsG0880043167.01.T01:intron 30.0%
TCTTCGTAACTTTCTAATCA+TGG - Chr8:20041707-20041726 MsG0880043167.01.T01:intron 30.0%
TGTCAAAAACAGAAGTCATA+AGG - Chr8:20040784-20040803 MsG0880043167.01.T01:intron 30.0%
TTCAATGAAGTTATTCATGC+AGG - Chr8:20042974-20042993 MsG0880043167.01.T01:intron 30.0%
TTCATGAAATGTTCCATATG+AGG + Chr8:20043755-20043774 None:intergenic 30.0%
TTCATGCTTCAAATCCAAAA+GGG - Chr8:20040742-20040761 MsG0880043167.01.T01:intron 30.0%
TTGAATGTAACCATATGTGT+CGG - Chr8:20042084-20042103 MsG0880043167.01.T01:intron 30.0%
TTTCTTTCATGGTTATGCAT+TGG - Chr8:20041354-20041373 MsG0880043167.01.T01:intron 30.0%
! ATTTTACAAGTGTCTCAAAG+GGG - Chr8:20041141-20041160 MsG0880043167.01.T01:intron 30.0%
! CATTTTACAAGTGTCTCAAA+GGG - Chr8:20041140-20041159 MsG0880043167.01.T01:intron 30.0%
! CTGTGAATAAATCAGGTTTT+CGG + Chr8:20041040-20041059 None:intergenic 30.0%
! TCATTTTACAAGTGTCTCAA+AGG - Chr8:20041139-20041158 MsG0880043167.01.T01:intron 30.0%
!! TGCAGCAATAATTTCTAGTT+TGG - Chr8:20042468-20042487 MsG0880043167.01.T01:intron 30.0%
!!! TACTTGTTTTTTTCCTAAGC+AGG - Chr8:20040349-20040368 MsG0880043167.01.T01:intron 30.0%
AAAAGGGATTGTACTTGACA+GGG - Chr8:20040758-20040777 MsG0880043167.01.T01:intron 35.0%
AACTCGTCAGTGTTTACTAA+AGG + Chr8:20043030-20043049 None:intergenic 35.0%
AAGTAAGTAGTGACTGATAG+AGG + Chr8:20040865-20040884 None:intergenic 35.0%
AAGTTTACACCTGAAAATCG+TGG - Chr8:20043298-20043317 MsG0880043167.01.T01:intron 35.0%
AATTTGCATCTGATTCCAAC+TGG - Chr8:20040982-20041001 MsG0880043167.01.T01:intron 35.0%
ACATGGTTAATCATGTTCAG+TGG + Chr8:20043405-20043424 None:intergenic 35.0%
ATTGTGTCTCATGTGCTTAA+AGG - Chr8:20041442-20041461 MsG0880043167.01.T01:intron 35.0%
ATTTCATGAAATTGACGCTG+AGG - Chr8:20043765-20043784 MsG0880043167.01.T01:CDS 35.0%
CAAATTGAGAGACATACATC+GGG + Chr8:20040115-20040134 None:intergenic 35.0%
CAAGATAAATAGATGCACAG+TGG + Chr8:20041588-20041607 None:intergenic 35.0%
CAATTTGGCTGTAAGATATG+CGG - Chr8:20040128-20040147 MsG0880043167.01.T01:CDS 35.0%
CACATGAGACACAATAAACA+AGG + Chr8:20041437-20041456 None:intergenic 35.0%
CCAAATTGAGAGACATACAT+CGG + Chr8:20040116-20040135 None:intergenic 35.0%
CTTCATAATCGCGACAAATT+GGG - Chr8:20040048-20040067 MsG0880043167.01.T01:CDS 35.0%
GGATGATTCATTGATACAAC+AGG + Chr8:20043384-20043403 None:intergenic 35.0%
GGTTAATTGTGTTCAGTTGA+TGG - Chr8:20043341-20043360 MsG0880043167.01.T01:intron 35.0%
GTCAGTGTTTACTAAAGGTT+GGG + Chr8:20043025-20043044 None:intergenic 35.0%
GTTCATGCTTCAAATCCAAA+AGG - Chr8:20040741-20040760 MsG0880043167.01.T01:intron 35.0%
TAAGTGATAAGAGCTTAACC+TGG + Chr8:20041201-20041220 None:intergenic 35.0%
TAGAACCTAACCAAAAAGAG+AGG - Chr8:20040274-20040293 MsG0880043167.01.T01:intron 35.0%
TCAGTGTTTACTAAAGGTTG+GGG + Chr8:20043024-20043043 None:intergenic 35.0%
TCGTCCTTGTTAGTTAAGTA+AGG + Chr8:20041623-20041642 None:intergenic 35.0%
TGAAAGGTTTACACAGCTTT+AGG - Chr8:20041850-20041869 MsG0880043167.01.T01:intron 35.0%
TGAAATGTTCCATATGAGGA+AGG + Chr8:20043751-20043770 None:intergenic 35.0%
TGGATTACATAATGACCACA+AGG + Chr8:20041658-20041677 None:intergenic 35.0%
TTATCGTGTAAATTCTGCTC+AGG - Chr8:20041789-20041808 MsG0880043167.01.T01:intron 35.0%
TTCATAATCGCGACAAATTG+GGG - Chr8:20040049-20040068 MsG0880043167.01.T01:CDS 35.0%
TTCTACCAAAACAGTAGACA+TGG - Chr8:20042675-20042694 MsG0880043167.01.T01:intron 35.0%
TTGAAGCATGAACTAAGTGT+AGG + Chr8:20040734-20040753 None:intergenic 35.0%
! AAAGTGCCAGTTATGAAACA+CGG - Chr8:20042025-20042044 MsG0880043167.01.T01:intron 35.0%
! CATCATTAACCACGATTTTC+AGG + Chr8:20043310-20043329 None:intergenic 35.0%
! CTCTTTGCTGTATCAGAATA+TGG - Chr8:20042809-20042828 MsG0880043167.01.T01:intron 35.0%
! TAAATTCAGCTTTTGCCGTT+AGG - Chr8:20041311-20041330 MsG0880043167.01.T01:CDS 35.0%
! TAGTTAAGTAAGGCGTCATA+TGG + Chr8:20041613-20041632 None:intergenic 35.0%
!! TGATCGTTTGTTATGAGACA+AGG + Chr8:20043824-20043843 None:intergenic 35.0%
AACTCTATCGTACTACAGGT+CGG - Chr8:20040159-20040178 MsG0880043167.01.T01:CDS 40.0%
AATCTTCCTAACCTGCAATC+AGG + Chr8:20042497-20042516 None:intergenic 40.0%
ATGATTGGAGCTCATCCTAA+CGG + Chr8:20041329-20041348 None:intergenic 40.0%
CAAAAGGGATTGTACTTGAC+AGG - Chr8:20040757-20040776 MsG0880043167.01.T01:intron 40.0%
CCGATGTATGTCTCTCAATT+TGG - Chr8:20040113-20040132 MsG0880043167.01.T01:CDS 40.0%
CGTCAGTGTTTACTAAAGGT+TGG + Chr8:20043026-20043045 None:intergenic 40.0%
CTTAAAGGATACTTGCACAC+TGG - Chr8:20041457-20041476 MsG0880043167.01.T01:intron 40.0%
GAAGAGTCAATTAATTGCGG+AGG - Chr8:20041740-20041759 MsG0880043167.01.T01:intron 40.0%
GAAGATTTCCACCCATTGTT+AGG - Chr8:20042510-20042529 MsG0880043167.01.T01:intron 40.0%
GACGCCTTACTTAACTAACA+AGG - Chr8:20041616-20041635 MsG0880043167.01.T01:intron 40.0%
GAGTTCACAATTCTAACCAC+AGG - Chr8:20041246-20041265 MsG0880043167.01.T01:CDS 40.0%
GATCAACTCTATCGTACTAC+AGG - Chr8:20040155-20040174 MsG0880043167.01.T01:CDS 40.0%
GCTAGAGAAAGATCGGAATA+TGG - Chr8:20043609-20043628 MsG0880043167.01.T01:intron 40.0%
GCTTCATAATCGCGACAAAT+TGG - Chr8:20040047-20040066 MsG0880043167.01.T01:CDS 40.0%
GGTAAAAAATCGTCCTGCTT+AGG + Chr8:20040365-20040384 None:intergenic 40.0%
GTAAACTTGAGCACAAACTG+TGG + Chr8:20043286-20043305 None:intergenic 40.0%
TATCAGCTGAACACTTCTCT+TGG - Chr8:20040934-20040953 MsG0880043167.01.T01:intron 40.0%
TCATACTGTCCACAACATGT+CGG + Chr8:20041225-20041244 None:intergenic 40.0%
TCCAAACCCAATCAGTTTGT+GGG - Chr8:20041989-20042008 MsG0880043167.01.T01:intron 40.0%
TTCCAAACCCAATCAGTTTG+TGG - Chr8:20041988-20042007 MsG0880043167.01.T01:intron 40.0%
TTCCTTCTCAATCCAAAGGA+TGG + Chr8:20042603-20042622 None:intergenic 40.0%
TTGTGTCCGTGTTTCATAAC+TGG + Chr8:20042034-20042053 None:intergenic 40.0%
TTTGGACATCTGCAAAATCG+TGG + Chr8:20043244-20043263 None:intergenic 40.0%
! ATCATGAGGTCCTCTCTTTT+TGG + Chr8:20040287-20040306 None:intergenic 40.0%
! CTGTCAAGTACAATCCCTTT+TGG + Chr8:20040759-20040778 None:intergenic 40.0%
! GAAGATTCTGGAAGATCTAG+TGG - Chr8:20043787-20043806 MsG0880043167.01.T01:CDS 40.0%
! GAGGATTAGATGTGTCATTG+AGG + Chr8:20040846-20040865 None:intergenic 40.0%
! GTATGCCATGTCTACTGTTT+TGG + Chr8:20042683-20042702 None:intergenic 40.0%
! TGTTTTCCTTTCTTGGCAGT+TGG - Chr8:20041411-20041430 MsG0880043167.01.T01:intron 40.0%
!! AGGATTTGTTGAATGGAGTG+TGG - Chr8:20041065-20041084 MsG0880043167.01.T01:intron 40.0%
!! CAGTGGTTGTTTTCCTTTCT+TGG - Chr8:20041404-20041423 MsG0880043167.01.T01:intron 40.0%
!! GGTTCTGAGGAAGTTAATAG+CGG - Chr8:20039949-20039968 MsG0880043167.01.T01:CDS 40.0%
!!! AGCAGGACGATTTTTTACCT+CGG - Chr8:20040366-20040385 MsG0880043167.01.T01:intron 40.0%
AACTGGCACTTTGTTGAAGC+AGG + Chr8:20042017-20042036 None:intergenic 45.0%
ACAACTGTACGTGTCAGACA+CGG - Chr8:20042118-20042137 MsG0880043167.01.T01:intron 45.0%
ACAATGTGATAGAGACGACC+AGG + Chr8:20041521-20041540 None:intergenic 45.0%
ACAGAATCCACCATGCCATA+AGG + Chr8:20040636-20040655 None:intergenic 45.0%
ACCACTGTAGCTCATAAAGC+TGG + Chr8:20041391-20041410 None:intergenic 45.0%
AGAAGAAACTCCAAGACCCA+AGG - Chr8:20041483-20041502 MsG0880043167.01.T01:intron 45.0%
AGATCGGAATATGGAGATCC+CGG - Chr8:20043618-20043637 MsG0880043167.01.T01:intron 45.0%
AGCTTAACCTGGTAACCTCA+AGG + Chr8:20041190-20041209 None:intergenic 45.0%
ATCACTTAGCCGACATGTTG+TGG - Chr8:20041213-20041232 MsG0880043167.01.T01:intron 45.0%
ATGTTGCCTCTCTACTCAGA+TGG + Chr8:20040512-20040531 None:intergenic 45.0%
ATTGACGCTGAGGAAGATTC+TGG - Chr8:20043775-20043794 MsG0880043167.01.T01:CDS 45.0%
ATTGGGGATACAGAGAGACA+AGG - Chr8:20040065-20040084 MsG0880043167.01.T01:CDS 45.0%
CAACAAGACACCGACACATA+TGG + Chr8:20042097-20042116 None:intergenic 45.0%
CCAAACCCAATCAGTTTGTG+GGG - Chr8:20041990-20042009 MsG0880043167.01.T01:intron 45.0%
CGATCTTCTGATAGTCCTTG+TGG - Chr8:20041640-20041659 MsG0880043167.01.T01:intron 45.0%
CTTAACCTGGTAACCTCAAG+GGG + Chr8:20041188-20041207 None:intergenic 45.0%
GACGTTATGGGACATTCACT+TGG - Chr8:20039991-20040010 MsG0880043167.01.T01:CDS 45.0%
GATTGAGAAGGAATCCCAAC+GGG - Chr8:20042610-20042629 MsG0880043167.01.T01:intron 45.0%
GCATACTCACCTTCCTCATA+TGG - Chr8:20043739-20043758 MsG0880043167.01.T01:CDS 45.0%
GCATATCAATTGTCGCATGG+TGG - Chr8:20040595-20040614 MsG0880043167.01.T01:intron 45.0%
GCTTAACCTGGTAACCTCAA+GGG + Chr8:20041189-20041208 None:intergenic 45.0%
GGATTGAGAAGGAATCCCAA+CGG - Chr8:20042609-20042628 MsG0880043167.01.T01:intron 45.0%
GGGATTCCTTCTCAATCCAA+AGG + Chr8:20042607-20042626 None:intergenic 45.0%
GGTACTGCTGTCCTAACAAT+GGG + Chr8:20042524-20042543 None:intergenic 45.0%
GTGTTGCAGCCTAATACCTA+TGG + Chr8:20040667-20040686 None:intergenic 45.0%
TACCAGCCACCATAGGTATT+AGG - Chr8:20040655-20040674 MsG0880043167.01.T01:intron 45.0%
TCGTGTAAATTCTGCTCAGG+AGG - Chr8:20041792-20041811 MsG0880043167.01.T01:intron 45.0%
TCTCAATCCAAAGGATGGCA+TGG + Chr8:20042598-20042617 None:intergenic 45.0%
TGATCAAACCTTCCATCGAC+AGG + Chr8:20042545-20042564 None:intergenic 45.0%
TGCCATCCTTTGGATTGAGA+AGG - Chr8:20042598-20042617 MsG0880043167.01.T01:intron 45.0%
TGCGCATATCAATTGTCGCA+TGG - Chr8:20040592-20040611 MsG0880043167.01.T01:intron 45.0%
TTGCAGCCTAATACCTATGG+TGG + Chr8:20040664-20040683 None:intergenic 45.0%
! AGAGAGCATACTGTACCTGA+AGG + Chr8:20041555-20041574 None:intergenic 45.0%
! AGGTACTGCTGTCCTAACAA+TGG + Chr8:20042525-20042544 None:intergenic 45.0%
! CATATGTGTCGGTGTCTTGT+TGG - Chr8:20042095-20042114 MsG0880043167.01.T01:intron 45.0%
! CTAACCATCTTTTGCTCTGC+CGG + Chr8:20043640-20043659 None:intergenic 45.0%
! GAGAGCATACTGTACCTGAA+GGG + Chr8:20041554-20041573 None:intergenic 45.0%
! TAACCATCTTTTGCTCTGCC+GGG + Chr8:20043639-20043658 None:intergenic 45.0%
! TCCAGCTTTATGAGCTACAG+TGG - Chr8:20041387-20041406 MsG0880043167.01.T01:intron 45.0%
!!! GAGGTCCTCTCTTTTTGGTT+AGG + Chr8:20040282-20040301 None:intergenic 45.0%
!!! GCGTCTACAAGTCACTTTTG+TGG - Chr8:20040407-20040426 MsG0880043167.01.T01:intron 45.0%
!! AATTATTATTATTTGATATA+CGG - Chr8:20043550-20043569 MsG0880043167.01.T01:intron 5.0%
ACAAGGCCAACTGCCAAGAA+AGG + Chr8:20041420-20041439 None:intergenic 50.0%
ACCAAGCCATCTGAGTAGAG+AGG - Chr8:20040503-20040522 MsG0880043167.01.T01:intron 50.0%
ACTGCTGTCCTAACAATGGG+TGG + Chr8:20042521-20042540 None:intergenic 50.0%
AGCCTAATACCTATGGTGGC+TGG + Chr8:20040660-20040679 None:intergenic 50.0%
ATGTTTGACGTGGACGACAC+AGG - Chr8:20043871-20043890 MsG0880043167.01.T01:CDS 50.0%
ATTTGAGCTCTGTCCCCTTG+AGG - Chr8:20041172-20041191 MsG0880043167.01.T01:intron 50.0%
CAACTGTACGTGTCAGACAC+GGG - Chr8:20042119-20042138 MsG0880043167.01.T01:intron 50.0%
CAGGTCCCCACAAACTGATT+GGG + Chr8:20041998-20042017 None:intergenic 50.0%
CCCCACAAACTGATTGGGTT+TGG + Chr8:20041993-20042012 None:intergenic 50.0%
CGGCAGAGCAAAAGATGGTT+AGG - Chr8:20043638-20043657 MsG0880043167.01.T01:intron 50.0%
CTACTGACCATGCCATCCTT+TGG - Chr8:20042588-20042607 MsG0880043167.01.T01:intron 50.0%
CTCCCTGCGAGAAAAGACTT+CGG - Chr8:20042312-20042331 MsG0880043167.01.T01:CDS 50.0%
CTTCCTAACCTGCAATCAGG+AGG + Chr8:20042494-20042513 None:intergenic 50.0%
GAGGAAGGTGAGTATGCTTG+AGG + Chr8:20043736-20043755 None:intergenic 50.0%
GATTCTGTACCAGCCACCAT+AGG - Chr8:20040648-20040667 MsG0880043167.01.T01:intron 50.0%
TAGTTTGGCCTCCTGATTGC+AGG - Chr8:20042483-20042502 MsG0880043167.01.T01:intron 50.0%
TCAGTGTGCGTGCATTGTCA+TGG - Chr8:20040543-20040562 MsG0880043167.01.T01:intron 50.0%
TTGAGAGACATACATCGGGC+AGG + Chr8:20040111-20040130 None:intergenic 50.0%
! CAGGTTTTCGGTATTCACCG+AGG + Chr8:20041028-20041047 None:intergenic 50.0%
! GACCGAAGTCTTTTCTCGCA+GGG + Chr8:20042317-20042336 None:intergenic 50.0%
!! ATGGGACATTCACTTGGTGC+TGG - Chr8:20039997-20040016 MsG0880043167.01.T01:CDS 50.0%
!! TGGGACATTCACTTGGTGCT+GGG - Chr8:20039998-20040017 MsG0880043167.01.T01:CDS 50.0%
AATTGTCGCATGGTGGCTCG+TGG - Chr8:20040602-20040621 MsG0880043167.01.T01:intron 55.0%
AGCTTACATCGAGAGCCCGT+TGG + Chr8:20042628-20042647 None:intergenic 55.0%
AGGACAGCAGTACCTGTCGA+TGG - Chr8:20042530-20042549 MsG0880043167.01.T01:intron 55.0%
CAAAGCAACTGCCCTCCGAA+GGG + Chr8:20043707-20043726 None:intergenic 55.0%
CAGCAGTACCTGTCGATGGA+AGG - Chr8:20042534-20042553 MsG0880043167.01.T01:intron 55.0%
CAGGTGCATACAGACGCCTT+GGG + Chr8:20041502-20041521 None:intergenic 55.0%
CATACAGACGCCTTGGGTCT+TGG + Chr8:20041496-20041515 None:intergenic 55.0%
CATACATCGGGCAGGAGCAA+TGG + Chr8:20040103-20040122 None:intergenic 55.0%
CGAGAAAAGACTTCGGTCGC+TGG - Chr8:20042319-20042338 MsG0880043167.01.T01:CDS 55.0%
CGTGGACGACACAGGTCATA+TGG - Chr8:20043879-20043898 MsG0880043167.01.T01:CDS 55.0%
GATCCCGGCAGAGCAAAAGA+TGG - Chr8:20043633-20043652 MsG0880043167.01.T01:intron 55.0%
GCAGGTCCCCACAAACTGAT+TGG + Chr8:20041999-20042018 None:intergenic 55.0%
GCCTCTCTACTCAGATGGCT+TGG + Chr8:20040507-20040526 None:intergenic 55.0%
GCTTACATCGAGAGCCCGTT+GGG + Chr8:20042627-20042646 None:intergenic 55.0%
TCCACCATGCCATAAGGCCA+TGG + Chr8:20040630-20040649 None:intergenic 55.0%
TCTGTCCCCTTGAGGTTACC+AGG - Chr8:20041180-20041199 MsG0880043167.01.T01:intron 55.0%
TGGCCTCCTGATTGCAGGTT+AGG - Chr8:20042488-20042507 MsG0880043167.01.T01:intron 55.0%
TGTAGACGCTTCCAGAGCAG+TGG + Chr8:20040396-20040415 None:intergenic 55.0%
TGTCGGACGCATGTTTGACG+TGG - Chr8:20043861-20043880 MsG0880043167.01.T01:CDS 55.0%
TTGTCGAGCGAAAGCCCTTC+AGG - Chr8:20041537-20041556 MsG0880043167.01.T01:CDS 55.0%
! CGACCGAAGTCTTTTCTCGC+AGG + Chr8:20042318-20042337 None:intergenic 55.0%
!! AAGAGTACCGTGCAGCCCTT+CGG - Chr8:20043689-20043708 MsG0880043167.01.T01:intron 55.0%
!! ACATTCACTTGGTGCTGGGG+TGG - Chr8:20040002-20040021 MsG0880043167.01.T01:CDS 55.0%
!! GGGACATTCACTTGGTGCTG+GGG - Chr8:20039999-20040018 MsG0880043167.01.T01:CDS 55.0%
!! TCCATGGCCTTATGGCATGG+TGG - Chr8:20040626-20040645 MsG0880043167.01.T01:intron 55.0%
ACCTCGGACAACCACTGCTC+TGG - Chr8:20040382-20040401 MsG0880043167.01.T01:intron 60.0%
CCAAAGCAACTGCCCTCCGA+AGG + Chr8:20043708-20043727 None:intergenic 60.0%
CCAGGTGCATACAGACGCCT+TGG + Chr8:20041503-20041522 None:intergenic 60.0%
CCTTCGGAGGGCAGTTGCTT+TGG - Chr8:20043705-20043724 MsG0880043167.01.T01:CDS 60.0%
TCCAGAGCAGTGGTTGTCCG+AGG + Chr8:20040386-20040405 None:intergenic 60.0%
! CCAAGGCGTCTGTATGCACC+TGG - Chr8:20041500-20041519 MsG0880043167.01.T01:CDS 60.0%
! CTCGTGGCTCCATGGCCTTA+TGG - Chr8:20040618-20040637 MsG0880043167.01.T01:intron 60.0%
!! GGCTCCATGGCCTTATGGCA+TGG - Chr8:20040623-20040642 MsG0880043167.01.T01:intron 60.0%
!! TTCACTTGGTGCTGGGGTGG+TGG - Chr8:20040005-20040024 MsG0880043167.01.T01:CDS 60.0%
AGTACCGTGCAGCCCTTCGG+AGG - Chr8:20043692-20043711 MsG0880043167.01.T01:CDS 65.0%
CATGGTGGCTCGTGGCTCCA+TGG - Chr8:20040610-20040629 MsG0880043167.01.T01:intron 65.0%
GTACCGTGCAGCCCTTCGGA+GGG - Chr8:20043693-20043712 MsG0880043167.01.T01:CDS 65.0%
CTGCCCTCCGAAGGGCTGCA+CGG + Chr8:20043699-20043718 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 20039943 20043924 20039943 ID=MsG0880043167.01;Name=MsG0880043167.01
Chr8 mRNA 20039943 20043924 20039943 ID=MsG0880043167.01.T01;Parent=MsG0880043167.01;Name=MsG0880043167.01.T01;_AED=0.44;_eAED=0.51;_QI=0|0|0|1|1|1|5|0|290
Chr8 exon 20043691 20043924 20043691 ID=MsG0880043167.01.T01:exon:5332;Parent=MsG0880043167.01.T01
Chr8 exon 20042309 20042403 20042309 ID=MsG0880043167.01.T01:exon:5331;Parent=MsG0880043167.01.T01
Chr8 exon 20041487 20041573 20041487 ID=MsG0880043167.01.T01:exon:5330;Parent=MsG0880043167.01.T01
Chr8 exon 20041227 20041362 20041227 ID=MsG0880043167.01.T01:exon:5329;Parent=MsG0880043167.01.T01
Chr8 exon 20039943 20040263 20039943 ID=MsG0880043167.01.T01:exon:5328;Parent=MsG0880043167.01.T01
Chr8 CDS 20043691 20043924 20043691 ID=MsG0880043167.01.T01:cds;Parent=MsG0880043167.01.T01
Chr8 CDS 20042309 20042403 20042309 ID=MsG0880043167.01.T01:cds;Parent=MsG0880043167.01.T01
Chr8 CDS 20041487 20041573 20041487 ID=MsG0880043167.01.T01:cds;Parent=MsG0880043167.01.T01
Chr8 CDS 20041227 20041362 20041227 ID=MsG0880043167.01.T01:cds;Parent=MsG0880043167.01.T01
Chr8 CDS 20039943 20040263 20039943 ID=MsG0880043167.01.T01:cds;Parent=MsG0880043167.01.T01
Gene Sequence

>MsG0880043167.01.T01

ATGGGAGGTTCTGAGGAAGTTAATAGCGGAACATCCAACTTATATGTTGACGTTATGGGACATTCACTTGGTGCTGGGGTGGTGGCGTTGTTGACAATGATAGCGCTTCATAATCGCGACAAATTGGGGATACAGAGAGACAAGGTAAAATGCTACGCCATTGCTCCTGCCCGATGTATGTCTCTCAATTTGGCTGTAAGATATGCGGATGTGATCAACTCTATCGTACTACAGGATACTTGCACACTGGAAGAGAAGAAACTCCAAGACCCAAGGCGTCTGTATGCACCTGGTCGTCTCTATCACATTGTCGAGCGAAAGCCCTTCAGAACAACTGGTGTCATTATCTCCCTGCGAGAAAAGACTTCGGTCGCTGGTTGTTTTGCTTTAATTGAAGTCTACGTCACTAAATTACGGTTAGGAAGATTTCCACCCATTGTTAGGACAGCAGTACCTGTCGATGGAAGGTTTGATCATATAGTTCTTTCTTGCAATGCAACTACTGACCATGCCATCCTTTGGATTGAGAAGGAATCCCAACGGGCTCTCGATTTAATGCTAGAGAAAGATCGGAATATGGAGATCCCGGCAGAGCAAAAGATGGTTAGGCAAGAATCTCTAGCTCGCGAACACAGTGAAGAGTACCGTGCAGCCCTTCGGAGGGCAGTTGCTTTGGATATTCCTCAAGCATACTCACCTTCCTCATATGGAACATTTCATGAAATTGACGCTGAGGAAGATTCTGGAAGATCTAGTGGCAAAGACTCTTCCTTGTCTCATAACAAACGATCAGAAAGTTGGAATGAATTTGTCGGACGCATGTTTGACGTGGACGACACAGGTCATATGGTGTTCAAGAAGACAACTCCTTAA
Protein sequence

>MsG0880043167.01.T01

MGGSEEVNSGTSNLYVDVMGHSLGAGVVALLTMIALHNRDKLGIQRDKVKCYAIAPARCMSLNLAVRYADVINSIVLQDTCTLEEKKLQDPRRLYAPGRLYHIVERKPFRTTGVIISLREKTSVAGCFALIEVYVTKLRLGRFPPIVRTAVPVDGRFDHIVLSCNATTDHAILWIEKESQRALDLMLEKDRNMEIPAEQKMVRQESLAREHSEEYRAALRRAVALDIPQAYSPSSYGTFHEIDAEEDSGRSSGKDSSLSHNKRSESWNEFVGRMFDVDDTGHMVFKKTTP*