Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029195.01.T01 | XP_003616632.1 | 96.211 | 607 | 23 | 0 | 1 | 607 | 1 | 607 | 0 | 1225 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029195.01.T01 | Q8GV43 | 53.259 | 629 | 245 | 11 | 2 | 607 | 11 | 613 | 0 | 650 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029195.01.T01 | G7KH08 | 96.211 | 607 | 23 | 0 | 1 | 607 | 1 | 607 | 0.0 | 1225 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048532.01 | MsG0580029195.01 | -0.807410 | 5.125214e-50 | 2.852641e-47 |
MsG0180000116.01 | MsG0580029195.01 | 0.826793 | 2.232345e-54 | 2.114814e-51 |
MsG0180000151.01 | MsG0580029195.01 | 0.814495 | 1.496253e-51 | 1.005581e-48 |
MsG0180004422.01 | MsG0580029195.01 | 0.800464 | 1.423575e-48 | 6.632743e-46 |
MsG0180005354.01 | MsG0580029195.01 | 0.826428 | 2.728292e-54 | 2.557941e-51 |
MsG0280011330.01 | MsG0580029195.01 | 0.828669 | 7.906065e-55 | 7.911121e-52 |
MsG0380012184.01 | MsG0580029195.01 | 0.834292 | 3.260919e-56 | 3.853128e-53 |
MsG0380012249.01 | MsG0580029195.01 | 0.812968 | 3.245881e-51 | 2.092724e-48 |
MsG0380014288.01 | MsG0580029195.01 | 0.807268 | 5.492231e-50 | 3.045663e-47 |
MsG0380014727.01 | MsG0580029195.01 | 0.822339 | 2.497948e-53 | 2.084956e-50 |
MsG0380014866.01 | MsG0580029195.01 | 0.836761 | 7.742783e-57 | 9.853145e-54 |
MsG0480019547.01 | MsG0580029195.01 | 0.800276 | 1.554747e-48 | 7.209704e-46 |
MsG0480022066.01 | MsG0580029195.01 | 0.816205 | 6.235036e-52 | 4.390175e-49 |
MsG0480022330.01 | MsG0580029195.01 | 0.827826 | 1.262657e-54 | 1.232757e-51 |
MsG0480023937.01 | MsG0580029195.01 | 0.875032 | 4.241377e-68 | 1.951781e-64 |
MsG0580024160.01 | MsG0580029195.01 | 0.804445 | 2.153125e-49 | 1.110330e-46 |
MsG0580024433.01 | MsG0580029195.01 | 0.810743 | 9.904581e-51 | 6.019301e-48 |
MsG0580024975.01 | MsG0580029195.01 | 0.818259 | 2.152415e-52 | 1.603120e-49 |
MsG0580026032.01 | MsG0580029195.01 | 0.800597 | 1.337513e-48 | 6.252955e-46 |
MsG0580026067.01 | MsG0580029195.01 | 0.805931 | 1.051819e-49 | 5.635721e-47 |
MsG0380015215.01 | MsG0580029195.01 | -0.810990 | 8.755231e-51 | 5.356626e-48 |
MsG0380015810.01 | MsG0580029195.01 | 0.806868 | 6.672727e-50 | 3.662063e-47 |
MsG0380016566.01 | MsG0580029195.01 | 0.816388 | 5.673276e-52 | 4.014503e-49 |
MsG0380017220.01 | MsG0580029195.01 | 0.804053 | 2.597914e-49 | 1.326362e-46 |
MsG0380017625.01 | MsG0580029195.01 | 0.805103 | 1.569039e-49 | 8.229946e-47 |
MsG0580027923.01 | MsG0580029195.01 | 0.831583 | 1.537283e-55 | 1.675587e-52 |
MsG0580029195.01 | MsG0680030558.01 | 0.802598 | 5.200329e-49 | 2.557794e-46 |
MsG0580029195.01 | MsG0680030995.01 | 0.802504 | 5.437225e-49 | 2.667898e-46 |
MsG0580029195.01 | MsG0680035844.01 | 0.826902 | 2.101757e-54 | 1.997643e-51 |
MsG0580029195.01 | MsG0780038644.01 | 0.840809 | 6.952888e-58 | 1.001892e-54 |
MsG0580029195.01 | MsG0780038833.01 | 0.801086 | 1.062649e-48 | 5.030325e-46 |
MsG0580029195.01 | MsG0780040518.01 | 0.816790 | 4.612736e-52 | 3.300132e-49 |
MsG0580029195.01 | MsG0880042743.01 | 0.822616 | 2.153756e-53 | 1.812049e-50 |
MsG0580029195.01 | MsG0880043167.01 | 0.809761 | 1.612738e-50 | 9.551031e-48 |
MsG0580029195.01 | MsG0880044315.01 | 0.810567 | 1.080843e-50 | 6.537576e-48 |
MsG0580029195.01 | MsG0880044705.01 | 0.811206 | 7.861610e-51 | 4.836726e-48 |
MsG0580029195.01 | MsG0880045926.01 | 0.803340 | 3.651960e-49 | 1.830532e-46 |
MsG0580029195.01 | MsG0880046023.01 | 0.845845 | 3.148663e-59 | 5.317365e-56 |
MsG0580029195.01 | MsG0880046890.01 | 0.833502 | 5.140337e-56 | 5.930875e-53 |
MsG0580029195.01 | MsG0880047252.01 | 0.815535 | 8.798279e-52 | 6.082173e-49 |
MsG0580029195.01 | MsG0880047285.01 | -0.823493 | 1.344658e-53 | 1.159629e-50 |
MsG0280006770.01 | MsG0580029195.01 | 0.810105 | 1.359616e-50 | 8.124667e-48 |
MsG0280007691.01 | MsG0580029195.01 | 0.803021 | 4.252528e-49 | 2.114134e-46 |
MsG0280007826.01 | MsG0580029195.01 | 0.805216 | 1.486071e-49 | 7.817233e-47 |
MsG0280007864.01 | MsG0580029195.01 | -0.818817 | 1.608381e-52 | 1.216549e-49 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029195.01.T01 | MTR_5g082580 | 96.211 | 607 | 23 | 0 | 1 | 607 | 1 | 607 | 0.0 | 1225 |
MsG0580029195.01.T01 | MTR_5g082590 | 60.100 | 599 | 220 | 7 | 8 | 606 | 2 | 581 | 0.0 | 727 |
MsG0580029195.01.T01 | MTR_3g070710 | 58.725 | 596 | 226 | 10 | 14 | 607 | 10 | 587 | 0.0 | 676 |
MsG0580029195.01.T01 | MTR_3g070560 | 59.235 | 601 | 221 | 11 | 12 | 607 | 7 | 588 | 0.0 | 668 |
MsG0580029195.01.T01 | MTR_5g071010 | 54.000 | 600 | 262 | 6 | 11 | 606 | 4 | 593 | 0.0 | 654 |
MsG0580029195.01.T01 | MTR_5g082620 | 50.749 | 601 | 273 | 9 | 11 | 606 | 6 | 588 | 0.0 | 598 |
MsG0580029195.01.T01 | MTR_3g070720 | 51.429 | 595 | 262 | 8 | 19 | 606 | 18 | 592 | 0.0 | 576 |
MsG0580029195.01.T01 | MTR_3g069280 | 51.684 | 594 | 253 | 9 | 19 | 606 | 6 | 571 | 0.0 | 574 |
MsG0580029195.01.T01 | MTR_3g070560 | 59.719 | 427 | 154 | 9 | 185 | 607 | 3 | 415 | 1.12e-173 | 499 |
MsG0580029195.01.T01 | MTR_5g071040 | 45.151 | 598 | 281 | 10 | 11 | 606 | 20 | 572 | 4.74e-173 | 504 |
MsG0580029195.01.T01 | MTR_3g070720 | 50.000 | 500 | 223 | 8 | 19 | 511 | 18 | 497 | 1.97e-154 | 453 |
MsG0580029195.01.T01 | MTR_3g070720 | 48.941 | 472 | 214 | 8 | 19 | 483 | 18 | 469 | 2.01e-137 | 410 |
MsG0580029195.01.T01 | MTR_3g070720 | 47.506 | 421 | 194 | 8 | 19 | 432 | 18 | 418 | 6.37e-112 | 342 |
MsG0580029195.01.T01 | MTR_3g070730 | 54.545 | 55 | 25 | 0 | 509 | 563 | 4 | 58 | 8.66e-14 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0580029195.01.T01 | AT2G40116 | 53.259 | 629 | 245 | 11 | 2 | 607 | 11 | 613 | 0.0 | 650 |
MsG0580029195.01.T01 | AT5G58700 | 51.661 | 602 | 270 | 8 | 11 | 606 | 10 | 596 | 0.0 | 612 |
MsG0580029195.01.T01 | AT5G58700 | 51.661 | 602 | 270 | 8 | 11 | 606 | 10 | 596 | 0.0 | 612 |
MsG0580029195.01.T01 | AT5G58690 | 50.083 | 601 | 264 | 6 | 11 | 606 | 8 | 577 | 0.0 | 594 |
MsG0580029195.01.T01 | AT5G58690 | 50.083 | 601 | 264 | 6 | 11 | 606 | 8 | 577 | 0.0 | 594 |
MsG0580029195.01.T01 | AT5G58690 | 50.940 | 585 | 251 | 6 | 27 | 606 | 5 | 558 | 0.0 | 591 |
MsG0580029195.01.T01 | AT3G08510 | 50.167 | 598 | 273 | 9 | 11 | 606 | 6 | 580 | 0.0 | 589 |
MsG0580029195.01.T01 | AT3G08510 | 50.167 | 598 | 273 | 9 | 11 | 606 | 6 | 580 | 0.0 | 589 |
MsG0580029195.01.T01 | AT3G55940 | 50.083 | 603 | 269 | 11 | 11 | 606 | 6 | 583 | 0.0 | 576 |
MsG0580029195.01.T01 | AT5G58700 | 55.061 | 494 | 207 | 6 | 119 | 606 | 4 | 488 | 0.0 | 539 |
MsG0580029195.01.T01 | AT3G08510 | 46.990 | 598 | 263 | 10 | 11 | 606 | 6 | 551 | 0.0 | 528 |
MsG0580029195.01.T01 | AT3G08510 | 46.990 | 598 | 263 | 10 | 11 | 606 | 6 | 551 | 0.0 | 528 |
MsG0580029195.01.T01 | AT5G58670 | 44.776 | 603 | 279 | 12 | 11 | 607 | 5 | 559 | 5.56e-174 | 506 |
MsG0580029195.01.T01 | AT4G38530 | 43.664 | 584 | 278 | 12 | 28 | 607 | 22 | 558 | 1.06e-161 | 474 |
MsG0580029195.01.T01 | AT3G47290 | 38.462 | 572 | 283 | 14 | 38 | 606 | 25 | 530 | 1.83e-116 | 357 |
MsG0580029195.01.T01 | AT3G47290 | 38.256 | 562 | 278 | 14 | 38 | 596 | 25 | 520 | 6.08e-112 | 347 |
MsG0580029195.01.T01 | AT3G47220 | 37.968 | 561 | 265 | 16 | 55 | 606 | 44 | 530 | 5.91e-109 | 338 |
Find 112 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACCCTTAAGTTTCTTATTT+TGG | 0.118300 | 5:-93471304 | None:intergenic |
CGAGGAGAATTTCACGTTAT+TGG | 0.170735 | 5:+93469992 | MsG0580029195.01.T01:CDS |
GTGTTATAGAACTTGATTTA+TGG | 0.172616 | 5:+93470460 | MsG0580029195.01.T01:CDS |
GGTTTCTGCATTAGAATTTC+AGG | 0.209969 | 5:-93472263 | None:intergenic |
TACTATTCTCACTATGTTAA+TGG | 0.214528 | 5:+93469567 | MsG0580029195.01.T01:five_prime_UTR |
TTGGAGTCTATCAAGAAATA+TGG | 0.288156 | 5:+93470653 | MsG0580029195.01.T01:CDS |
GGACACAATTCCTTCCTTAC+TGG | 0.299080 | 5:+93470375 | MsG0580029195.01.T01:CDS |
CAGATGGCAACTCAAATATT+TGG | 0.332400 | 5:+93470842 | MsG0580029195.01.T01:intron |
TGTTGCAGCGCCTTTATGAT+TGG | 0.348377 | 5:-93470429 | None:intergenic |
TTCACTGGCATAATCCTTGT+AGG | 0.368179 | 5:-93472308 | None:intergenic |
TCACATTATTTCATATATAC+AGG | 0.373381 | 5:+93470354 | MsG0580029195.01.T01:CDS |
GAGGGAGACGCGGGTTCATA+TGG | 0.374246 | 5:+93471224 | MsG0580029195.01.T01:CDS |
AATCCAAAATAAGAAACTTA+AGG | 0.376008 | 5:+93471301 | MsG0580029195.01.T01:CDS |
CAAAAGTAATCATGGACAAT+TGG | 0.378453 | 5:+93473118 | MsG0580029195.01.T01:CDS |
GGCAACTATCATGCTCTAGA+TGG | 0.380322 | 5:+93471004 | MsG0580029195.01.T01:CDS |
TGTATCACCTATCAAATGTT+TGG | 0.381688 | 5:+93470634 | MsG0580029195.01.T01:CDS |
CCAATTTCAGAGATAAAACT+TGG | 0.383327 | 5:+93473264 | MsG0580029195.01.T01:CDS |
CCACATCTTGGTTGGATGTA+TGG | 0.385766 | 5:+93471590 | MsG0580029195.01.T01:CDS |
TCCACTTCAATTGTAGAATC+TGG | 0.391302 | 5:-93471070 | None:intergenic |
TTACGACAGGTTGGTATTGT+TGG | 0.393338 | 5:+93473066 | MsG0580029195.01.T01:intron |
ATAGACTCCAAACATTTGAT+AGG | 0.395008 | 5:-93470641 | None:intergenic |
ACAAATTTCAAGCCACATCT+TGG | 0.397778 | 5:+93471578 | MsG0580029195.01.T01:CDS |
TTCTTCCTTGCAATGTCAGC+AGG | 0.404340 | 5:-93473093 | None:intergenic |
AATCTGTAAAGTTGCTAATG+AGG | 0.409885 | 5:+93473331 | MsG0580029195.01.T01:CDS |
ATCCAAAATAAGAAACTTAA+GGG | 0.420003 | 5:+93471302 | MsG0580029195.01.T01:CDS |
TGCTTAGTTGATTTCCAGTA+AGG | 0.430931 | 5:-93470389 | None:intergenic |
AAACATTTGATAGGTGATAC+AGG | 0.433878 | 5:-93470632 | None:intergenic |
CTCATGGAACAGACATCATT+AGG | 0.435189 | 5:+93471408 | MsG0580029195.01.T01:CDS |
CATTATATAAGTGCATGTTT+TGG | 0.437248 | 5:+93469739 | MsG0580029195.01.T01:five_prime_UTR |
ATATCTTCTTTACTAGAAGT+TGG | 0.441522 | 5:-93470483 | None:intergenic |
AGTCCCTTTATATAATGAAA+AGG | 0.442307 | 5:+93473296 | MsG0580029195.01.T01:CDS |
CAAGGAATGTTCAGAGCAAA+TGG | 0.442876 | 5:+93472218 | MsG0580029195.01.T01:CDS |
GGAGGAAAAGATGACTTTGC+TGG | 0.448423 | 5:+93473228 | MsG0580029195.01.T01:CDS |
AGGTTGTTTCGCTCCAACTT+AGG | 0.451502 | 5:-93471367 | None:intergenic |
GATTTGACACGTGTCGCCCT+AGG | 0.453433 | 5:-93471554 | None:intergenic |
CTGACCTTTGTGTAAAAGTC+TGG | 0.458406 | 5:-93472504 | None:intergenic |
CTTAAACATTCTGCTGGTTG+AGG | 0.462468 | 5:-93470881 | None:intergenic |
GAAGAAAACAAAAGTAATCA+TGG | 0.462747 | 5:+93473110 | MsG0580029195.01.T01:CDS |
TTGGACTTAAAACGTTCTTT+CGG | 0.467487 | 5:-93470965 | None:intergenic |
AAAGTACAAGGTGACTGAAC+TGG | 0.469738 | 5:+93469869 | MsG0580029195.01.T01:CDS |
GAAGATATTAAAGTTGATCA+TGG | 0.470581 | 5:+93470498 | MsG0580029195.01.T01:CDS |
GCCGTTGTCCTTGATCCGGT+TGG | 0.472915 | 5:-93470984 | None:intergenic |
ATCTGAAGTAAAGCAAGCTC+TGG | 0.475991 | 5:-93473183 | None:intergenic |
GATGGTTGCATTCAATATGC+AGG | 0.480468 | 5:+93471619 | MsG0580029195.01.T01:CDS |
GTTAAACTTAAACATTCTGC+TGG | 0.482099 | 5:-93470887 | None:intergenic |
AAAATCTCCTTGAGGTCCTC+AGG | 0.484345 | 5:-93469897 | None:intergenic |
CAGTGAAGAACCAATCATAA+AGG | 0.485723 | 5:+93470419 | MsG0580029195.01.T01:CDS |
GTCCCTTTATATAATGAAAA+GGG | 0.487512 | 5:+93473297 | MsG0580029195.01.T01:CDS |
ATTTCAAGCCACATCTTGGT+TGG | 0.488655 | 5:+93471582 | MsG0580029195.01.T01:CDS |
ATATACTTAGGGTGTACCCT+AGG | 0.488798 | 5:+93471537 | MsG0580029195.01.T01:CDS |
GAGCGAAACAACCTTAGAAA+AGG | 0.490928 | 5:+93471376 | MsG0580029195.01.T01:CDS |
TTTAACAGAATTTCCTTCAC+CGG | 0.497230 | 5:+93470904 | MsG0580029195.01.T01:CDS |
CGGTTTCTTGTGGAGCATCA+AGG | 0.501212 | 5:+93469969 | MsG0580029195.01.T01:CDS |
GTGAACTTAGACGCCTAAGT+TGG | 0.503997 | 5:+93471354 | MsG0580029195.01.T01:CDS |
GCAAGCTCTGGAACAGTCAA+AGG | 0.505738 | 5:-93473171 | None:intergenic |
TCTTCTATAGTTATGATCAC+TGG | 0.505821 | 5:-93470695 | None:intergenic |
GCAATTACATCGGTTTCTTG+TGG | 0.510508 | 5:+93469959 | MsG0580029195.01.T01:CDS |
AGTTGCCGTTGTCCTTGATC+CGG | 0.511054 | 5:-93470988 | None:intergenic |
GAAAAGGCTTCAGAATCTCA+TGG | 0.512234 | 5:+93471392 | MsG0580029195.01.T01:CDS |
AAGGAGCATTGAAATCATCT+AGG | 0.512950 | 5:-93470133 | None:intergenic |
AAGATGTGGCTTGAAATTTG+TGG | 0.522605 | 5:-93471576 | None:intergenic |
TCAAACTCATTGTCACATTG+AGG | 0.525560 | 5:-93472284 | None:intergenic |
ATCATCAGAAGAAGAATCAT+CGG | 0.530210 | 5:+93471036 | MsG0580029195.01.T01:CDS |
CAAGTAAAAGACAAAGATCA+AGG | 0.532668 | 5:+93473207 | MsG0580029195.01.T01:CDS |
GCAGCTGAGAAGGATACATC+AGG | 0.533113 | 5:+93470043 | MsG0580029195.01.T01:CDS |
TTCAGAGCAAATGGAGGATG+TGG | 0.534038 | 5:+93472227 | MsG0580029195.01.T01:CDS |
TCATCAGAAGAAGAATCATC+GGG | 0.538026 | 5:+93471037 | MsG0580029195.01.T01:CDS |
TAGTTGATTTCCAGTAAGGA+AGG | 0.543182 | 5:-93470385 | None:intergenic |
TGAAGTGGAGATTAATAGTA+CGG | 0.546568 | 5:+93471084 | MsG0580029195.01.T01:CDS |
AAATTTACATGGGACATGGT+TGG | 0.547253 | 5:+93472439 | MsG0580029195.01.T01:CDS |
GCCAGATTCTACAATTGAAG+TGG | 0.550059 | 5:+93471069 | MsG0580029195.01.T01:CDS |
ACAATGAGTTTGATCCTACA+AGG | 0.550530 | 5:+93472294 | MsG0580029195.01.T01:CDS |
GACTTAAAACGTTCTTTCGG+AGG | 0.550648 | 5:-93470962 | None:intergenic |
AATGGAAGTGATAGCGATGA+GGG | 0.559246 | 5:+93471206 | MsG0580029195.01.T01:CDS |
CAATGCTCCTTTGAAAACCG+AGG | 0.563473 | 5:+93470145 | MsG0580029195.01.T01:CDS |
ATTTGACACGTGTCGCCCTA+GGG | 0.563743 | 5:-93471553 | None:intergenic |
ATCATAAAGGCGCTGCAACA+AGG | 0.565020 | 5:+93470432 | MsG0580029195.01.T01:CDS |
GACTGAACTGGTTCCACCTG+AGG | 0.567204 | 5:+93469881 | MsG0580029195.01.T01:CDS |
AGAAGAAGAATCATCGGGAA+AGG | 0.569568 | 5:+93471042 | MsG0580029195.01.T01:CDS |
CAAGCTCTGGAACAGTCAAA+GGG | 0.571677 | 5:-93473170 | None:intergenic |
GGTTCCACCTGAGGACCTCA+AGG | 0.573335 | 5:+93469890 | MsG0580029195.01.T01:CDS |
GTAATGTAATTAATTCATCT+AGG | 0.573641 | 5:+93473378 | MsG0580029195.01.T01:three_prime_UTR |
TTGGATGTATGGAGCTCAGA+TGG | 0.573916 | 5:+93471601 | MsG0580029195.01.T01:CDS |
ATTATTTCAAGAGTGTTCAC+CGG | 0.574429 | 5:+93471259 | MsG0580029195.01.T01:CDS |
TGACATGTATGATCCTCCTC+CGG | 0.578192 | 5:-93469931 | None:intergenic |
AGGGGTTAGGCAGATCACTC+TGG | 0.583024 | 5:+93472189 | MsG0580029195.01.T01:intron |
ATGTTGATCAAAGTAGAGAA+AGG | 0.584587 | 5:+93470075 | MsG0580029195.01.T01:CDS |
AAAACTGGAAGATATCATCA+AGG | 0.585709 | 5:-93470106 | None:intergenic |
ATATTAAAGTTGATCATGGA+TGG | 0.592217 | 5:+93470502 | MsG0580029195.01.T01:CDS |
ATCTCCTTGAGGTCCTCAGG+TGG | 0.594384 | 5:-93469894 | None:intergenic |
AGATCACTCTGGTTGATGCA+AGG | 0.597460 | 5:+93472200 | MsG0580029195.01.T01:CDS |
AAAGATAAATTGAAAACTGA+TGG | 0.597987 | 5:+93471332 | MsG0580029195.01.T01:CDS |
ACCTTTGTGTAAAAGTCTGG+TGG | 0.605391 | 5:-93472501 | None:intergenic |
TGATAGCGATGAGGGAGACG+CGG | 0.617630 | 5:+93471214 | MsG0580029195.01.T01:CDS |
GATAGCGATGAGGGAGACGC+GGG | 0.620564 | 5:+93471215 | MsG0580029195.01.T01:CDS |
AGAGAACATATCAAAGTGTG+TGG | 0.622904 | 5:-93472478 | None:intergenic |
TATACTTAGGGTGTACCCTA+GGG | 0.624728 | 5:+93471538 | MsG0580029195.01.T01:CDS |
AAGAAACCGATGTAATTGCT+CGG | 0.626617 | 5:-93469955 | None:intergenic |
TGGACAATTGGTTTCCTGTG+TGG | 0.629099 | 5:+93473130 | MsG0580029195.01.T01:CDS |
CCATACATCCAACCAAGATG+TGG | 0.631436 | 5:-93471590 | None:intergenic |
GTATGCCTGCTGACATTGCA+AGG | 0.644882 | 5:+93473088 | MsG0580029195.01.T01:CDS |
TATATGAAATAATGTGACAA+TGG | 0.645807 | 5:-93470348 | None:intergenic |
TGGTGATTAAGCTTTGTGTG+TGG | 0.647352 | 5:+93469759 | MsG0580029195.01.T01:five_prime_UTR |
TCTTGTGGAGCATCAAGGCG+AGG | 0.647884 | 5:+93469974 | MsG0580029195.01.T01:CDS |
GAATGGAAGTGATAGCGATG+AGG | 0.651551 | 5:+93471205 | MsG0580029195.01.T01:intron |
GAGAACATATCAAAGTGTGT+GGG | 0.660094 | 5:-93472477 | None:intergenic |
AAACTGGAAGATATCATCAA+GGG | 0.660585 | 5:-93470105 | None:intergenic |
TCAAACTCTTCATTCCACAC+AGG | 0.668818 | 5:-93473144 | None:intergenic |
GGAATGTTCAGAGCAAATGG+AGG | 0.692479 | 5:+93472221 | MsG0580029195.01.T01:CDS |
TCCAACCGGATCAAGGACAA+CGG | 0.693783 | 5:+93470983 | MsG0580029195.01.T01:CDS |
TGTCAACCGAGCAATTACAT+CGG | 0.739747 | 5:+93469949 | MsG0580029195.01.T01:CDS |
GTAAAAGACAAAGATCAAGG+AGG | 0.751088 | 5:+93473210 | MsG0580029195.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATCATGTTAAAATATAAATA+GGG | + | Chr5:93471878-93471897 | MsG0580029195.01.T01:intron | 10.0% |
!!! | AATTTCAAGATTTAATTTAT+TGG | - | Chr5:93471929-93471948 | None:intergenic | 10.0% |
!! | AAAGTAGTAAGAAAAAAAAA+AGG | - | Chr5:93472158-93472177 | None:intergenic | 15.0% |
!! | ATAATCCAAAAATATTTGTT+TGG | - | Chr5:93472564-93472583 | None:intergenic | 15.0% |
!! | ATGTTAATATGTTTAATAAC+AGG | + | Chr5:93472413-93472432 | MsG0580029195.01.T01:intron | 15.0% |
!! | CATCATGTTAAAATATAAAT+AGG | + | Chr5:93471877-93471896 | MsG0580029195.01.T01:intron | 15.0% |
!! | TATTGTTTATATAGTCTAAA+TGG | - | Chr5:93470530-93470549 | None:intergenic | 15.0% |
!! | TTCTAATAGAAATAAAATAG+AGG | + | Chr5:93472832-93472851 | MsG0580029195.01.T01:intron | 15.0% |
!!! | TAATGGTTAACTTTTTTTTT+TGG | + | Chr5:93473421-93473440 | MsG0580029195.01.T01:three_prime_UTR | 15.0% |
!!! | TTTTTTTGTTTTTATCAGAA+TGG | + | Chr5:93471188-93471207 | MsG0580029195.01.T01:intron | 15.0% |
!! | AAAATTATCGATGTAAGATT+AGG | + | Chr5:93472637-93472656 | MsG0580029195.01.T01:intron | 20.0% |
!! | AAAGATAAATTGAAAACTGA+TGG | + | Chr5:93471332-93471351 | MsG0580029195.01.T01:CDS | 20.0% |
!! | AAATTATCGATGTAAGATTA+GGG | + | Chr5:93472638-93472657 | MsG0580029195.01.T01:intron | 20.0% |
!! | AATAGAAATAAAATAGAGGT+AGG | + | Chr5:93472836-93472855 | MsG0580029195.01.T01:intron | 20.0% |
!! | AATCCAAAATAAGAAACTTA+AGG | + | Chr5:93471301-93471320 | MsG0580029195.01.T01:CDS | 20.0% |
!! | ATAACAGGTAAAAATTTACA+TGG | + | Chr5:93472428-93472447 | MsG0580029195.01.T01:intron | 20.0% |
!! | ATAGAAATAAAATAGAGGTA+GGG | + | Chr5:93472837-93472856 | MsG0580029195.01.T01:intron | 20.0% |
!! | ATCCAAAATAAGAAACTTAA+GGG | + | Chr5:93471302-93471321 | MsG0580029195.01.T01:CDS | 20.0% |
!! | ATGAATATTGAGATTAGAAA+AGG | - | Chr5:93470789-93470808 | None:intergenic | 20.0% |
!! | CACACAAAAAAATATACTTA+GGG | + | Chr5:93471526-93471545 | MsG0580029195.01.T01:CDS | 20.0% |
!! | GTAATGTAATTAATTCATCT+AGG | + | Chr5:93473378-93473397 | MsG0580029195.01.T01:three_prime_UTR | 20.0% |
!! | TAAAATTGAGTAATGTACTA+TGG | - | Chr5:93472356-93472375 | None:intergenic | 20.0% |
!! | TAACAGGTAAAAATTTACAT+GGG | + | Chr5:93472429-93472448 | MsG0580029195.01.T01:intron | 20.0% |
!! | TACCATATCATATCTTATAA+AGG | + | Chr5:93472124-93472143 | MsG0580029195.01.T01:intron | 20.0% |
!! | TATATGAAATAATGTGACAA+TGG | - | Chr5:93470351-93470370 | None:intergenic | 20.0% |
!! | TCACACAAAAAAATATACTT+AGG | + | Chr5:93471525-93471544 | MsG0580029195.01.T01:CDS | 20.0% |
!! | TCACATTATTTCATATATAC+AGG | + | Chr5:93470354-93470373 | MsG0580029195.01.T01:CDS | 20.0% |
!! | TTATATGTATATCTTACAGT+TGG | + | Chr5:93473035-93473054 | MsG0580029195.01.T01:intron | 20.0% |
!! | TTCCTTTATAAGATATGATA+TGG | - | Chr5:93472129-93472148 | None:intergenic | 20.0% |
!!! | CTACTTTTTCAAATTATTGT+CGG | + | Chr5:93472050-93472069 | MsG0580029195.01.T01:intron | 20.0% |
!!! | GTACATTACTCAATTTTAAA+AGG | + | Chr5:93472358-93472377 | MsG0580029195.01.T01:intron | 20.0% |
!!! | TAAATCCTTCATCTTTTTAA+TGG | + | Chr5:93473404-93473423 | MsG0580029195.01.T01:three_prime_UTR | 20.0% |
! | AGATAGAAACAAAAAAAGCA+TGG | + | Chr5:93469652-93469671 | MsG0580029195.01.T01:five_prime_UTR | 25.0% |
! | AGTCCCTTTATATAATGAAA+AGG | + | Chr5:93473296-93473315 | MsG0580029195.01.T01:CDS | 25.0% |
! | ATATCTTCTTTACTAGAAGT+TGG | - | Chr5:93470486-93470505 | None:intergenic | 25.0% |
! | CCAAAAGCAGATTAATATAT+AGG | - | Chr5:93472540-93472559 | None:intergenic | 25.0% |
! | GAAGAAAACAAAAGTAATCA+TGG | + | Chr5:93473110-93473129 | MsG0580029195.01.T01:CDS | 25.0% |
! | GTCCCTTTATATAATGAAAA+GGG | + | Chr5:93473297-93473316 | MsG0580029195.01.T01:CDS | 25.0% |
! | GTGTTATAGAACTTGATTTA+TGG | + | Chr5:93470460-93470479 | MsG0580029195.01.T01:CDS | 25.0% |
! | GTTAACCATTAAAAAGATGA+AGG | - | Chr5:93473412-93473431 | None:intergenic | 25.0% |
! | TACTATTCTCACTATGTTAA+TGG | + | Chr5:93469567-93469586 | MsG0580029195.01.T01:five_prime_UTR | 25.0% |
! | TACTTGAAACAGTTGTAAAA+TGG | - | Chr5:93472895-93472914 | None:intergenic | 25.0% |
! | TCTCTCTATCACAATTAAAA+AGG | + | Chr5:93471710-93471729 | MsG0580029195.01.T01:intron | 25.0% |
! | TTGAAAATGTTGTTAGAAAG+TGG | + | Chr5:93471755-93471774 | MsG0580029195.01.T01:intron | 25.0% |
!! | ATATTAAAGTTGATCATGGA+TGG | + | Chr5:93470502-93470521 | MsG0580029195.01.T01:CDS | 25.0% |
!! | CACCCTTTTCATTATATAAA+GGG | - | Chr5:93473302-93473321 | None:intergenic | 25.0% |
!! | CATTATATAAGTGCATGTTT+TGG | + | Chr5:93469739-93469758 | MsG0580029195.01.T01:five_prime_UTR | 25.0% |
!! | CCTATATATTAATCTGCTTT+TGG | + | Chr5:93472537-93472556 | MsG0580029195.01.T01:intron | 25.0% |
!! | GAAGATATTAAAGTTGATCA+TGG | + | Chr5:93470498-93470517 | MsG0580029195.01.T01:CDS | 25.0% |
!! | GTTATTATGCTTTTGTAATC+CGG | - | Chr5:93471281-93471300 | None:intergenic | 25.0% |
!! | GTTCTTTATCAAAAAGTACA+AGG | + | Chr5:93469857-93469876 | MsG0580029195.01.T01:CDS | 25.0% |
!! | TCACCCTTTTCATTATATAA+AGG | - | Chr5:93473303-93473322 | None:intergenic | 25.0% |
!! | TTGGTCCAAACAAATATTTT+TGG | + | Chr5:93472556-93472575 | MsG0580029195.01.T01:intron | 25.0% |
!!! | ATTTTACAACTGTTTCAAGT+AGG | + | Chr5:93472894-93472913 | MsG0580029195.01.T01:intron | 25.0% |
!!! | TACCCTTAAGTTTCTTATTT+TGG | - | Chr5:93471307-93471326 | None:intergenic | 25.0% |
!!! | TATATTTTTTTGTGTGAACC+TGG | - | Chr5:93471522-93471541 | None:intergenic | 25.0% |
AAAACTGGAAGATATCATCA+AGG | - | Chr5:93470109-93470128 | None:intergenic | 30.0% | |
AAACATTTGATAGGTGATAC+AGG | - | Chr5:93470635-93470654 | None:intergenic | 30.0% | |
AAACTGGAAGATATCATCAA+GGG | - | Chr5:93470108-93470127 | None:intergenic | 30.0% | |
AATCTGTAAAGTTGCTAATG+AGG | + | Chr5:93473331-93473350 | MsG0580029195.01.T01:CDS | 30.0% | |
ACTCATAAAAAATCTCCTTG+AGG | - | Chr5:93469908-93469927 | None:intergenic | 30.0% | |
AGTTTGACCTAGTAACTTTA+TGG | - | Chr5:93472934-93472953 | None:intergenic | 30.0% | |
ATAGACTCCAAACATTTGAT+AGG | - | Chr5:93470644-93470663 | None:intergenic | 30.0% | |
ATCATCAGAAGAAGAATCAT+CGG | + | Chr5:93471036-93471055 | MsG0580029195.01.T01:CDS | 30.0% | |
ATGTTGATCAAAGTAGAGAA+AGG | + | Chr5:93470075-93470094 | MsG0580029195.01.T01:CDS | 30.0% | |
ATTCAAACTGTTATTCTTCC+AGG | + | Chr5:93471501-93471520 | MsG0580029195.01.T01:intron | 30.0% | |
CAAAAGTAATCATGGACAAT+TGG | + | Chr5:93473118-93473137 | MsG0580029195.01.T01:CDS | 30.0% | |
CAAGTAAAAGACAAAGATCA+AGG | + | Chr5:93473207-93473226 | MsG0580029195.01.T01:CDS | 30.0% | |
CATGGAAATGGAATAATAGT+GGG | + | Chr5:93471788-93471807 | MsG0580029195.01.T01:intron | 30.0% | |
CCAATTTCAGAGATAAAACT+TGG | + | Chr5:93473264-93473283 | MsG0580029195.01.T01:CDS | 30.0% | |
GAAAAACATGGGAAATAAGA+TGG | + | Chr5:93469806-93469825 | MsG0580029195.01.T01:exon | 30.0% | |
GAAAGACTAAATGTCATTAC+AGG | + | Chr5:93470305-93470324 | MsG0580029195.01.T01:intron | 30.0% | |
GTAAAAATTTACATGGGACA+TGG | + | Chr5:93472435-93472454 | MsG0580029195.01.T01:CDS | 30.0% | |
GTTAAACTTAAACATTCTGC+TGG | - | Chr5:93470890-93470909 | None:intergenic | 30.0% | |
GTTTGAATCAGATAAACCAT+AGG | - | Chr5:93471489-93471508 | None:intergenic | 30.0% | |
TACGAATTTCACTCATAACA+AGG | + | Chr5:93472794-93472813 | MsG0580029195.01.T01:intron | 30.0% | |
TCATGGAAATGGAATAATAG+TGG | + | Chr5:93471787-93471806 | MsG0580029195.01.T01:intron | 30.0% | |
TCTTCTATAGTTATGATCAC+TGG | - | Chr5:93470698-93470717 | None:intergenic | 30.0% | |
TCTTGTGATCATTGATATTG+TGG | + | Chr5:93472678-93472697 | MsG0580029195.01.T01:intron | 30.0% | |
TGAAGTGGAGATTAATAGTA+CGG | + | Chr5:93471084-93471103 | MsG0580029195.01.T01:CDS | 30.0% | |
TGTATCACCTATCAAATGTT+TGG | + | Chr5:93470634-93470653 | MsG0580029195.01.T01:CDS | 30.0% | |
TGTTGCACAAGAATTATGAA+GGG | - | Chr5:93472612-93472631 | None:intergenic | 30.0% | |
TTGGACTTAAAACGTTCTTT+CGG | - | Chr5:93470968-93470987 | None:intergenic | 30.0% | |
TTGGAGTCTATCAAGAAATA+TGG | + | Chr5:93470653-93470672 | MsG0580029195.01.T01:CDS | 30.0% | |
TTGTTGCACAAGAATTATGA+AGG | - | Chr5:93472613-93472632 | None:intergenic | 30.0% | |
TTTAACAGAATTTCCTTCAC+CGG | + | Chr5:93470904-93470923 | MsG0580029195.01.T01:CDS | 30.0% | |
! | AAGTTAATCCACTTGTCTTT+TGG | - | Chr5:93472093-93472112 | None:intergenic | 30.0% |
! | CTTCTTGATTTTCTACTTGT+TGG | + | Chr5:93469711-93469730 | MsG0580029195.01.T01:five_prime_UTR | 30.0% |
! | GTAATGACATTTAGTCTTTC+TGG | - | Chr5:93470305-93470324 | None:intergenic | 30.0% |
! | TGGTGACATACAAATTTTGA+AGG | - | Chr5:93472743-93472762 | None:intergenic | 30.0% |
!! | ACCTTTAATGTCTTTTTCAC+TGG | - | Chr5:93472326-93472345 | None:intergenic | 30.0% |
!! | ACTCGATTTTTCAATGATTC+CGG | - | Chr5:93470926-93470945 | None:intergenic | 30.0% |
!! | ATTATTTCAAGAGTGTTCAC+CGG | + | Chr5:93471259-93471278 | MsG0580029195.01.T01:CDS | 30.0% |
!!! | ACTACTTTTTTACCTCGATA+GGG | + | Chr5:93472170-93472189 | MsG0580029195.01.T01:intron | 30.0% |
!!! | CCAAGTTTTATCTCTGAAAT+TGG | - | Chr5:93473267-93473286 | None:intergenic | 30.0% |
!!! | GAGATTTTTTATGAGTTTGC+CGG | + | Chr5:93469912-93469931 | MsG0580029195.01.T01:CDS | 30.0% |
!!! | TACTACTTTTTTACCTCGAT+AGG | + | Chr5:93472169-93472188 | MsG0580029195.01.T01:intron | 30.0% |
AAATTTACATGGGACATGGT+TGG | + | Chr5:93472439-93472458 | MsG0580029195.01.T01:CDS | 35.0% | |
AACACAGAGAGGAAAAACAT+GGG | + | Chr5:93469795-93469814 | MsG0580029195.01.T01:exon | 35.0% | |
AAGAAACCGATGTAATTGCT+CGG | - | Chr5:93469958-93469977 | None:intergenic | 35.0% | |
AAGATGTGGCTTGAAATTTG+TGG | - | Chr5:93471579-93471598 | None:intergenic | 35.0% | |
AATCATCTAGGAGCAAAAAC+TGG | - | Chr5:93470124-93470143 | None:intergenic | 35.0% | |
ACAAATTTCAAGCCACATCT+TGG | + | Chr5:93471578-93471597 | MsG0580029195.01.T01:CDS | 35.0% | |
ACAATGAGTTTGATCCTACA+AGG | + | Chr5:93472294-93472313 | MsG0580029195.01.T01:CDS | 35.0% | |
AGAGAACATATCAAAGTGTG+TGG | - | Chr5:93472481-93472500 | None:intergenic | 35.0% | |
ATAAACCATAGGACACTGTT+AGG | - | Chr5:93471478-93471497 | None:intergenic | 35.0% | |
CAGATGGCAACTCAAATATT+TGG | + | Chr5:93470842-93470861 | MsG0580029195.01.T01:intron | 35.0% | |
CAGTGAAGAACCAATCATAA+AGG | + | Chr5:93470419-93470438 | MsG0580029195.01.T01:CDS | 35.0% | |
CTTCGTACCATAAAGTTACT+AGG | + | Chr5:93472924-93472943 | MsG0580029195.01.T01:intron | 35.0% | |
GAGAACATATCAAAGTGTGT+GGG | - | Chr5:93472480-93472499 | None:intergenic | 35.0% | |
GCCAGTGAAAAAGACATTAA+AGG | + | Chr5:93472322-93472341 | MsG0580029195.01.T01:CDS | 35.0% | |
GGTTTCTGCATTAGAATTTC+AGG | - | Chr5:93472266-93472285 | None:intergenic | 35.0% | |
GTAAAAGACAAAGATCAAGG+AGG | + | Chr5:93473210-93473229 | MsG0580029195.01.T01:CDS | 35.0% | |
TCAAACTCATTGTCACATTG+AGG | - | Chr5:93472287-93472306 | None:intergenic | 35.0% | |
TCAAACTCTTACCACTGAAT+CGG | + | Chr5:93472947-93472966 | MsG0580029195.01.T01:intron | 35.0% | |
TCATCAGAAGAAGAATCATC+GGG | + | Chr5:93471037-93471056 | MsG0580029195.01.T01:CDS | 35.0% | |
TCCACTTCAATTGTAGAATC+TGG | - | Chr5:93471073-93471092 | None:intergenic | 35.0% | |
TGCATTCAATATGCAGGTTA+GGG | + | Chr5:93471625-93471644 | MsG0580029195.01.T01:intron | 35.0% | |
TTGCATTCAATATGCAGGTT+AGG | + | Chr5:93471624-93471643 | MsG0580029195.01.T01:intron | 35.0% | |
! | AATTTTTGCTAGCAAGCGAT+TGG | + | Chr5:93471945-93471964 | MsG0580029195.01.T01:intron | 35.0% |
! | ATAAGATTTTGCAGCTGAGA+AGG | + | Chr5:93470033-93470052 | MsG0580029195.01.T01:CDS | 35.0% |
! | GAAAGTGGTGTTTCTTTTCA+TGG | + | Chr5:93471770-93471789 | MsG0580029195.01.T01:intron | 35.0% |
! | GGTGTTTCTTTTCATGGAAA+TGG | + | Chr5:93471776-93471795 | MsG0580029195.01.T01:intron | 35.0% |
! | TAGTTGATTTCCAGTAAGGA+AGG | - | Chr5:93470388-93470407 | None:intergenic | 35.0% |
! | TGCTTAGTTGATTTCCAGTA+AGG | - | Chr5:93470392-93470411 | None:intergenic | 35.0% |
! | TTGATTTTTGTCACTGTCAC+AGG | + | Chr5:93470597-93470616 | MsG0580029195.01.T01:intron | 35.0% |
!! | AAGAACGTTTTAAGTCCAAC+CGG | + | Chr5:93470969-93470988 | MsG0580029195.01.T01:CDS | 35.0% |
!! | AAGGAGCATTGAAATCATCT+AGG | - | Chr5:93470136-93470155 | None:intergenic | 35.0% |
!! | TCTTTCTGGTTAGCAAAGTA+AGG | - | Chr5:93470291-93470310 | None:intergenic | 35.0% |
!! | TTTTTCAATGATTCCGGTGA+AGG | - | Chr5:93470920-93470939 | None:intergenic | 35.0% |
!!! | AGATTCTGAAGCCTTTTCTA+AGG | - | Chr5:93471390-93471409 | None:intergenic | 35.0% |
!!! | ATTTTTTATGAGTTTGCCGG+AGG | + | Chr5:93469915-93469934 | MsG0580029195.01.T01:CDS | 35.0% |
!!! | CTACTTTTTTACCTCGATAG+GGG | + | Chr5:93472171-93472190 | MsG0580029195.01.T01:intron | 35.0% |
!!! | GATTAGTTTTTACGACAGGT+TGG | + | Chr5:93473057-93473076 | MsG0580029195.01.T01:intron | 35.0% |
!!! | GTTGGATTAGTTTTTACGAC+AGG | + | Chr5:93473053-93473072 | MsG0580029195.01.T01:intron | 35.0% |
AAAGTACAAGGTGACTGAAC+TGG | + | Chr5:93469869-93469888 | MsG0580029195.01.T01:CDS | 40.0% | |
AACATGATGACATGCACACT+AGG | - | Chr5:93471866-93471885 | None:intergenic | 40.0% | |
ACCTTTGTGTAAAAGTCTGG+TGG | - | Chr5:93472504-93472523 | None:intergenic | 40.0% | |
AGAAGAAGAATCATCGGGAA+AGG | + | Chr5:93471042-93471061 | MsG0580029195.01.T01:CDS | 40.0% | |
AGATTAGGGTTTACATGCTG+TGG | + | Chr5:93472652-93472671 | MsG0580029195.01.T01:intron | 40.0% | |
AGTTTGCAACACAACTGTTG+TGG | - | Chr5:93472763-93472782 | None:intergenic | 40.0% | |
ATATACTTAGGGTGTACCCT+AGG | + | Chr5:93471537-93471556 | MsG0580029195.01.T01:CDS | 40.0% | |
ATTTCAAGCCACATCTTGGT+TGG | + | Chr5:93471582-93471601 | MsG0580029195.01.T01:CDS | 40.0% | |
CAAGCGATTGGTGAATAATG+TGG | + | Chr5:93471957-93471976 | MsG0580029195.01.T01:intron | 40.0% | |
CAAGGAATGTTCAGAGCAAA+TGG | + | Chr5:93472218-93472237 | MsG0580029195.01.T01:CDS | 40.0% | |
CGAAAACATCGAAAGCAAGT+TGG | - | Chr5:93471659-93471678 | None:intergenic | 40.0% | |
CGAGGAGAATTTCACGTTAT+TGG | + | Chr5:93469992-93470011 | MsG0580029195.01.T01:CDS | 40.0% | |
CTCATGGAACAGACATCATT+AGG | + | Chr5:93471408-93471427 | MsG0580029195.01.T01:CDS | 40.0% | |
CTGACCTTTGTGTAAAAGTC+TGG | - | Chr5:93472507-93472526 | None:intergenic | 40.0% | |
GAAAAGGCTTCAGAATCTCA+TGG | + | Chr5:93471392-93471411 | MsG0580029195.01.T01:CDS | 40.0% | |
GAACACAGAGAGGAAAAACA+TGG | + | Chr5:93469794-93469813 | MsG0580029195.01.T01:exon | 40.0% | |
GACTTAAAACGTTCTTTCGG+AGG | - | Chr5:93470965-93470984 | None:intergenic | 40.0% | |
GAGCGAAACAACCTTAGAAA+AGG | + | Chr5:93471376-93471395 | MsG0580029195.01.T01:CDS | 40.0% | |
GATGGTTGCATTCAATATGC+AGG | + | Chr5:93471619-93471638 | MsG0580029195.01.T01:CDS | 40.0% | |
GCCAGATTCTACAATTGAAG+TGG | + | Chr5:93471069-93471088 | MsG0580029195.01.T01:CDS | 40.0% | |
TAGTACCTAACAGTGTCCTA+TGG | + | Chr5:93471470-93471489 | MsG0580029195.01.T01:intron | 40.0% | |
TATACTTAGGGTGTACCCTA+GGG | + | Chr5:93471538-93471557 | MsG0580029195.01.T01:CDS | 40.0% | |
TCAAACTCTTCATTCCACAC+AGG | - | Chr5:93473147-93473166 | None:intergenic | 40.0% | |
TGTCAACCGAGCAATTACAT+CGG | + | Chr5:93469949-93469968 | MsG0580029195.01.T01:CDS | 40.0% | |
TTCACTGGCATAATCCTTGT+AGG | - | Chr5:93472311-93472330 | None:intergenic | 40.0% | |
! | AATGGAAGTGATAGCGATGA+GGG | + | Chr5:93471206-93471225 | MsG0580029195.01.T01:CDS | 40.0% |
! | ATCTGAAGTAAAGCAAGCTC+TGG | - | Chr5:93473186-93473205 | None:intergenic | 40.0% |
! | CGTTTTACCTCGGTTTTCAA+AGG | - | Chr5:93470155-93470174 | None:intergenic | 40.0% |
! | CTTAAACATTCTGCTGGTTG+AGG | - | Chr5:93470884-93470903 | None:intergenic | 40.0% |
! | GTAGTGACTACGTTTTACCT+CGG | - | Chr5:93470165-93470184 | None:intergenic | 40.0% |
! | TCCACCAGACTTTTACACAA+AGG | + | Chr5:93472500-93472519 | MsG0580029195.01.T01:CDS | 40.0% |
! | TCGTTTTATCTTGTCGCAGA+TGG | + | Chr5:93470826-93470845 | MsG0580029195.01.T01:intron | 40.0% |
! | TGGTGATTAAGCTTTGTGTG+TGG | + | Chr5:93469759-93469778 | MsG0580029195.01.T01:five_prime_UTR | 40.0% |
! | TTGTGTGTGGAAAGCTTTTG+AGG | + | Chr5:93469772-93469791 | MsG0580029195.01.T01:five_prime_UTR | 40.0% |
! | TTTTTACCTCGATAGGGGTT+AGG | + | Chr5:93472176-93472195 | MsG0580029195.01.T01:intron | 40.0% |
!! | CTTTCAGCTGTTTTCTGATG+TGG | + | Chr5:93471835-93471854 | MsG0580029195.01.T01:intron | 40.0% |
!! | GCAATTACATCGGTTTCTTG+TGG | + | Chr5:93469959-93469978 | MsG0580029195.01.T01:CDS | 40.0% |
!! | TTACGACAGGTTGGTATTGT+TGG | + | Chr5:93473066-93473085 | MsG0580029195.01.T01:intron | 40.0% |
!! | TTTTAAGTCCAACCGGATCA+AGG | + | Chr5:93470976-93470995 | MsG0580029195.01.T01:CDS | 40.0% |
AAAATCTCCTTGAGGTCCTC+AGG | - | Chr5:93469900-93469919 | None:intergenic | 45.0% | |
ACAGCTGAAAGATCTGACTC+AGG | - | Chr5:93471826-93471845 | None:intergenic | 45.0% | |
CAGTCGCAATGCAATTGCAA+AGG | + | Chr5:93472717-93472736 | MsG0580029195.01.T01:intron | 45.0% | |
CAGTGCTTCCAAAAGACAAG+TGG | + | Chr5:93472082-93472101 | MsG0580029195.01.T01:intron | 45.0% | |
CCACATCTTGGTTGGATGTA+TGG | + | Chr5:93471590-93471609 | MsG0580029195.01.T01:CDS | 45.0% | |
CCATACATCCAACCAAGATG+TGG | - | Chr5:93471593-93471612 | None:intergenic | 45.0% | |
GGAATGTTCAGAGCAAATGG+AGG | + | Chr5:93472221-93472240 | MsG0580029195.01.T01:CDS | 45.0% | |
GGACACAATTCCTTCCTTAC+TGG | + | Chr5:93470375-93470394 | MsG0580029195.01.T01:CDS | 45.0% | |
GGAGGAAAAGATGACTTTGC+TGG | + | Chr5:93473228-93473247 | MsG0580029195.01.T01:CDS | 45.0% | |
GTGAACTTAGACGCCTAAGT+TGG | + | Chr5:93471354-93471373 | MsG0580029195.01.T01:CDS | 45.0% | |
TGACATGTATGATCCTCCTC+CGG | - | Chr5:93469934-93469953 | None:intergenic | 45.0% | |
TGTTGCAGCGCCTTTATGAT+TGG | - | Chr5:93470432-93470451 | None:intergenic | 45.0% | |
TTCAGAGCAAATGGAGGATG+TGG | + | Chr5:93472227-93472246 | MsG0580029195.01.T01:CDS | 45.0% | |
TTCTTCCTTGCAATGTCAGC+AGG | - | Chr5:93473096-93473115 | None:intergenic | 45.0% | |
TTGGATGTATGGAGCTCAGA+TGG | + | Chr5:93471601-93471620 | MsG0580029195.01.T01:CDS | 45.0% | |
! | AGATCACTCTGGTTGATGCA+AGG | + | Chr5:93472200-93472219 | MsG0580029195.01.T01:CDS | 45.0% |
! | AGGTTGTTTCGCTCCAACTT+AGG | - | Chr5:93471370-93471389 | None:intergenic | 45.0% |
! | CAATGCTCCTTTGAAAACCG+AGG | + | Chr5:93470145-93470164 | MsG0580029195.01.T01:CDS | 45.0% |
! | GAATGGAAGTGATAGCGATG+AGG | + | Chr5:93471205-93471224 | MsG0580029195.01.T01:intron | 45.0% |
! | GGCAACTATCATGCTCTAGA+TGG | + | Chr5:93471004-93471023 | MsG0580029195.01.T01:CDS | 45.0% |
! | TGGACAATTGGTTTCCTGTG+TGG | + | Chr5:93473130-93473149 | MsG0580029195.01.T01:CDS | 45.0% |
! | TTTTATGAGTTTGCCGGAGG+AGG | + | Chr5:93469918-93469937 | MsG0580029195.01.T01:CDS | 45.0% |
!! | AGCTTTTGAGGAACACAGAG+AGG | + | Chr5:93469784-93469803 | MsG0580029195.01.T01:five_prime_UTR | 45.0% |
!! | ATCATAAAGGCGCTGCAACA+AGG | + | Chr5:93470432-93470451 | MsG0580029195.01.T01:CDS | 45.0% |
!! | CAAGCTCTGGAACAGTCAAA+GGG | - | Chr5:93473173-93473192 | None:intergenic | 45.0% |
ACCACTGAATCGGCACATCA+TGG | + | Chr5:93472957-93472976 | MsG0580029195.01.T01:intron | 50.0% | |
AGTTGCCGTTGTCCTTGATC+CGG | - | Chr5:93470991-93471010 | None:intergenic | 50.0% | |
ATTTGACACGTGTCGCCCTA+GGG | - | Chr5:93471556-93471575 | None:intergenic | 50.0% | |
GCAGCTGAGAAGGATACATC+AGG | + | Chr5:93470043-93470062 | MsG0580029195.01.T01:CDS | 50.0% | |
GTATGCCTGCTGACATTGCA+AGG | + | Chr5:93473088-93473107 | MsG0580029195.01.T01:CDS | 50.0% | |
TCCAACCGGATCAAGGACAA+CGG | + | Chr5:93470983-93471002 | MsG0580029195.01.T01:CDS | 50.0% | |
! | CGGTTTCTTGTGGAGCATCA+AGG | + | Chr5:93469969-93469988 | MsG0580029195.01.T01:CDS | 50.0% |
!! | GCAAGCTCTGGAACAGTCAA+AGG | - | Chr5:93473174-93473193 | None:intergenic | 50.0% |
!! | TCCATGATGTGCCGATTCAG+TGG | - | Chr5:93472961-93472980 | None:intergenic | 50.0% |
AGGGGTTAGGCAGATCACTC+TGG | + | Chr5:93472189-93472208 | MsG0580029195.01.T01:intron | 55.0% | |
ATCTCCTTGAGGTCCTCAGG+TGG | - | Chr5:93469897-93469916 | None:intergenic | 55.0% | |
GATCTGCCTAACCCCTATCG+AGG | - | Chr5:93472185-93472204 | None:intergenic | 55.0% | |
GATTTGACACGTGTCGCCCT+AGG | - | Chr5:93471557-93471576 | None:intergenic | 55.0% | |
! | GACTGAACTGGTTCCACCTG+AGG | + | Chr5:93469881-93469900 | MsG0580029195.01.T01:CDS | 55.0% |
! | TCTTGTGGAGCATCAAGGCG+AGG | + | Chr5:93469974-93469993 | MsG0580029195.01.T01:CDS | 55.0% |
! | TGATAGCGATGAGGGAGACG+CGG | + | Chr5:93471214-93471233 | MsG0580029195.01.T01:CDS | 55.0% |
GAGGGAGACGCGGGTTCATA+TGG | + | Chr5:93471224-93471243 | MsG0580029195.01.T01:CDS | 60.0% | |
GATAGCGATGAGGGAGACGC+GGG | + | Chr5:93471215-93471234 | MsG0580029195.01.T01:CDS | 60.0% | |
GCCGTTGTCCTTGATCCGGT+TGG | - | Chr5:93470987-93471006 | None:intergenic | 60.0% | |
GGTTCCACCTGAGGACCTCA+AGG | + | Chr5:93469890-93469909 | MsG0580029195.01.T01:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr5 | gene | 93469435 | 93473447 | 93469435 | ID=MsG0580029195.01;Name=MsG0580029195.01 |
Chr5 | mRNA | 93469435 | 93473447 | 93469435 | ID=MsG0580029195.01.T01;Parent=MsG0580029195.01;Name=MsG0580029195.01.T01;_AED=0.22;_eAED=0.22;_QI=378|1|1|1|1|1|9|79|607 |
Chr5 | exon | 93469435 | 93470166 | 93469435 | ID=MsG0580029195.01.T01:exon:18004;Parent=MsG0580029195.01.T01 |
Chr5 | exon | 93470327 | 93470523 | 93470327 | ID=MsG0580029195.01.T01:exon:18005;Parent=MsG0580029195.01.T01 |
Chr5 | exon | 93470619 | 93470754 | 93470619 | ID=MsG0580029195.01.T01:exon:18006;Parent=MsG0580029195.01.T01 |
Chr5 | exon | 93470845 | 93471105 | 93470845 | ID=MsG0580029195.01.T01:exon:18007;Parent=MsG0580029195.01.T01 |
Chr5 | exon | 93471206 | 93471429 | 93471206 | ID=MsG0580029195.01.T01:exon:18008;Parent=MsG0580029195.01.T01 |
Chr5 | exon | 93471523 | 93471640 | 93471523 | ID=MsG0580029195.01.T01:exon:18009;Parent=MsG0580029195.01.T01 |
Chr5 | exon | 93472191 | 93472343 | 93472191 | ID=MsG0580029195.01.T01:exon:18010;Parent=MsG0580029195.01.T01 |
Chr5 | exon | 93472435 | 93472521 | 93472435 | ID=MsG0580029195.01.T01:exon:18011;Parent=MsG0580029195.01.T01 |
Chr5 | exon | 93473075 | 93473447 | 93473075 | ID=MsG0580029195.01.T01:exon:18012;Parent=MsG0580029195.01.T01 |
Chr5 | five_prime_UTR | 93469435 | 93469812 | 93469435 | ID=MsG0580029195.01.T01:five_prime_utr;Parent=MsG0580029195.01.T01 |
Chr5 | CDS | 93469813 | 93470166 | 93469813 | ID=MsG0580029195.01.T01:cds;Parent=MsG0580029195.01.T01 |
Chr5 | CDS | 93470327 | 93470523 | 93470327 | ID=MsG0580029195.01.T01:cds;Parent=MsG0580029195.01.T01 |
Chr5 | CDS | 93470619 | 93470754 | 93470619 | ID=MsG0580029195.01.T01:cds;Parent=MsG0580029195.01.T01 |
Chr5 | CDS | 93470845 | 93471105 | 93470845 | ID=MsG0580029195.01.T01:cds;Parent=MsG0580029195.01.T01 |
Chr5 | CDS | 93471206 | 93471429 | 93471206 | ID=MsG0580029195.01.T01:cds;Parent=MsG0580029195.01.T01 |
Chr5 | CDS | 93471523 | 93471640 | 93471523 | ID=MsG0580029195.01.T01:cds;Parent=MsG0580029195.01.T01 |
Chr5 | CDS | 93472191 | 93472343 | 93472191 | ID=MsG0580029195.01.T01:cds;Parent=MsG0580029195.01.T01 |
Chr5 | CDS | 93472435 | 93472521 | 93472435 | ID=MsG0580029195.01.T01:cds;Parent=MsG0580029195.01.T01 |
Chr5 | CDS | 93473075 | 93473368 | 93473075 | ID=MsG0580029195.01.T01:cds;Parent=MsG0580029195.01.T01 |
Chr5 | three_prime_UTR | 93473369 | 93473447 | 93473369 | ID=MsG0580029195.01.T01:three_prime_utr;Parent=MsG0580029195.01.T01 |
Gene Sequence |
Protein sequence |