AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014288.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014288.01.T01 MTR_3g054360 89.499 419 37 2 127 538 33 451 0.0 744
MsG0380014288.01.T01 MTR_3g054360 85.294 136 20 0 1 136 1 136 4.56e-68 228
MsG0380014288.01.T01 MTR_5g093980 61.965 397 151 0 127 523 31 427 4.73e-175 503
MsG0380014288.01.T01 MTR_5g093980 61.947 113 43 0 24 136 22 134 3.71e-35 138
MsG0380014288.01.T01 MTR_5g084690 47.342 395 206 2 127 519 36 430 8.61e-121 365
MsG0380014288.01.T01 MTR_5g084690 38.739 111 67 1 27 136 30 140 6.44e-17 84.0
MsG0380014288.01.T01 MTR_3g054370 97.521 121 3 0 16 136 16 136 6.91e-76 236
MsG0380014288.01.T01 MTR_3g054370 81.905 105 19 0 127 231 33 137 3.80e-47 161
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014288.01.T01 AT1G04970 47.222 396 203 2 127 519 33 425 2.61e-130 389
MsG0380014288.01.T01 AT1G04970 42.017 119 69 0 26 144 26 144 2.52e-22 100
MsG0380014288.01.T01 AT3G20270 43.038 395 216 4 127 519 71 458 1.98e-107 330
MsG0380014288.01.T01 AT3G20270 41.176 136 78 1 1 136 39 172 3.32e-21 97.1
MsG0380014288.01.T01 AT3G20270 42.169 415 228 5 127 539 71 475 4.89e-107 330
MsG0380014288.01.T01 AT3G20270 41.176 136 78 1 1 136 39 172 4.40e-21 97.1
MsG0380014288.01.T01 AT3G20270 42.169 415 228 5 127 539 71 475 4.89e-107 330
MsG0380014288.01.T01 AT3G20270 41.176 136 78 1 1 136 39 172 4.40e-21 97.1
MsG0380014288.01.T01 AT3G20270 42.169 415 228 5 127 539 71 475 4.89e-107 330
MsG0380014288.01.T01 AT3G20270 41.176 136 78 1 1 136 39 172 4.40e-21 97.1
MsG0380014288.01.T01 AT3G20270 42.607 399 220 4 127 523 278 669 6.25e-104 328
MsG0380014288.01.T01 AT3G20270 41.176 136 78 1 1 136 246 379 1.03e-20 96.7
MsG0380014288.01.T01 AT3G20270 42.607 399 220 4 127 523 278 669 6.25e-104 328
MsG0380014288.01.T01 AT3G20270 41.176 136 78 1 1 136 246 379 1.03e-20 96.7
MsG0380014288.01.T01 AT1G04970 50.512 293 139 2 230 519 10 299 1.14e-99 306
MsG0380014288.01.T01 AT1G04970 50.512 293 139 2 230 519 10 299 1.14e-99 306

Find 91 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATTCCATTTGGGATTTC+TGG 0.103398 3:-52498419 MsG0380014288.01.T01:CDS
TGCTCCACCATCCAACTTTA+TGG 0.190402 3:+52494631 None:intergenic
AGTTCTTGGTTGCTTCCTTT+TGG 0.205037 3:-52495576 MsG0380014288.01.T01:CDS
ATTGAAACCTTTATCATCTT+TGG 0.234186 3:+52493414 None:intergenic
GGTATTGTTGTAGTTGTTAC+TGG 0.252556 3:-52495639 MsG0380014288.01.T01:CDS
CATAAAATTGTTGTAATCTA+AGG 0.258555 3:+52492394 None:intergenic
TGCCATGTTTGGAAGGTTAC+AGG 0.292837 3:-52494746 MsG0380014288.01.T01:intron
TACTTGAAATGGAGCAAAAT+AGG 0.313813 3:-52492369 MsG0380014288.01.T01:CDS
TCACTAAATGTTTCGTTTGT+TGG 0.314446 3:-52493564 MsG0380014288.01.T01:CDS
AGCTCTTGGTTGATTCCATT+TGG 0.315353 3:-52498428 MsG0380014288.01.T01:CDS
TATGCAGTATTCTCAATCTT+TGG 0.322446 3:+52495756 None:intergenic
TTTGAAGATGGTTTCATCTC+TGG 0.324926 3:-52498713 MsG0380014288.01.T01:CDS
ACGCCTTCAATCTTAAGATT+TGG 0.333504 3:+52492015 None:intergenic
TCAATTGCAATTGCAATTAA+CGG 0.339198 3:-52493519 MsG0380014288.01.T01:CDS
ACTGCATATGTTCCACTTGT+TGG 0.348956 3:-52495741 MsG0380014288.01.T01:CDS
TAGTGGGACTGCTTCAATTA+AGG 0.358568 3:-52495544 MsG0380014288.01.T01:intron
TAGTGGGACTGCTTCAATTA+AGG 0.358568 3:-52498396 MsG0380014288.01.T01:intron
GGAAGTATACTGTCAGTTCT+TGG 0.365221 3:-52495590 MsG0380014288.01.T01:CDS
GCTCTTGGTTGATTCCATTT+GGG 0.365260 3:-52498427 MsG0380014288.01.T01:CDS
ACTGCACATAAGTCTTATTC+AGG 0.371021 3:-52492343 MsG0380014288.01.T01:intron
AAAGAAAGAGTAGGGGTATT+CGG 0.375982 3:-52492048 MsG0380014288.01.T01:intron
AATCCGTTCTTGTAACTTTG+AGG 0.384717 3:+52493465 None:intergenic
GTTAATTGCAATTGCAATTG+AGG 0.386934 3:+52493521 None:intergenic
TTAATCTGCATGTCGTCGTT+TGG 0.391973 3:+52493014 None:intergenic
AATACTTCGAATGTTATGAT+TGG 0.397759 3:-52495669 MsG0380014288.01.T01:CDS
ACTGCATATGTCCCACTTGT+TGG 0.398806 3:-52498593 MsG0380014288.01.T01:CDS
TATGCAGTATTCTCAATCTT+AGG 0.400954 3:+52498608 None:intergenic
TTATCTAGTGATATTTGCTT+TGG 0.407982 3:+52493594 None:intergenic
CAAGTGACTTACCAAGATAT+TGG 0.415649 3:-52492963 MsG0380014288.01.T01:CDS
AAGGATTTGTTGATAGAGAA+AGG 0.422195 3:-52495807 MsG0380014288.01.T01:CDS
TCTGTCTGATATCATGATTA+AGG 0.430948 3:-52495703 MsG0380014288.01.T01:CDS
TCTGTCTGATATCATGATTA+AGG 0.430948 3:-52498555 MsG0380014288.01.T01:CDS
TATCGATGAACTAGCTGATC+AGG 0.432262 3:-52493093 MsG0380014288.01.T01:CDS
CCATTTGGGATTTCTGGTAG+TGG 0.432675 3:-52498413 MsG0380014288.01.T01:CDS
TGGTTTACCAAAGATGATAA+AGG 0.454102 3:-52493421 MsG0380014288.01.T01:CDS
GGTTGAACATAGCCACTTGT+TGG 0.455964 3:+52498737 None:intergenic
AAAGAGTAGCACCAATATCT+TGG 0.456528 3:+52492952 None:intergenic
ACCACTGAGATGCATGCAAC+AGG 0.457862 3:+52492885 None:intergenic
TTTCTCTATCAACAAATCCT+TGG 0.458834 3:+52498661 None:intergenic
TATGTTCAACCCTTTGAAGA+TGG 0.462529 3:-52498725 MsG0380014288.01.T01:CDS
CATTTGGGATTTCTGGTAGT+GGG 0.463822 3:-52498412 MsG0380014288.01.T01:CDS
GCACCAAATCTTAAGATTGA+AGG 0.464317 3:-52492018 MsG0380014288.01.T01:CDS
CACTTGTTGGAATCAGTAGA+AGG 0.469878 3:+52498750 None:intergenic
CAATATCTTGGTAAGTCACT+TGG 0.471949 3:+52492964 None:intergenic
CTCTGGTGTTATATCTAACA+AGG 0.473917 3:-52498696 MsG0380014288.01.T01:CDS
GGGAGATTTATCCATAAAGT+TGG 0.474409 3:-52494642 MsG0380014288.01.T01:CDS
ACCTTAGCATTTCCAACAAG+TGG 0.476530 3:+52495729 None:intergenic
TGGTAAGTCACTTGGATGAC+TGG 0.478853 3:+52492972 None:intergenic
TCCATCCAGCGGTGTTCAGA+AGG 0.487478 3:+52493069 None:intergenic
AAGTTACAAGAACGGATTCA+AGG 0.496363 3:-52493460 MsG0380014288.01.T01:CDS
ACCTTAGCATTTCCAACAAG+TGG 0.511162 3:+52498581 None:intergenic
TTAAATTTAAAGAACAAAGA+AGG 0.511381 3:-52494704 MsG0380014288.01.T01:CDS
AAGGTTTCTTCTGCCTGTGG+TGG 0.514438 3:-52493441 MsG0380014288.01.T01:CDS
CAGGCCCTTCTGAACACCGC+TGG 0.517976 3:-52493074 MsG0380014288.01.T01:CDS
GGAAGTATACTGTGAGCTCT+TGG 0.529309 3:-52498442 MsG0380014288.01.T01:CDS
CCACTACCAGAAATCCCAAA+TGG 0.529559 3:+52498413 None:intergenic
CTCCGACATGTGTCAGACAT+TGG 0.532579 3:+52491990 None:intergenic
TTCAAGGTTTCTTCTGCCTG+TGG 0.534132 3:-52493444 MsG0380014288.01.T01:CDS
TTTAGATCATGGATGCTATG+TGG 0.536327 3:-52494663 MsG0380014288.01.T01:CDS
TTAGATCATGGATGCTATGT+GGG 0.536610 3:-52494662 MsG0380014288.01.T01:CDS
GGATATCGCTTGTATAATTG+CGG 0.536713 3:+52493035 None:intergenic
CAATTAACGGTTTATTCGCA+AGG 0.537824 3:-52493506 MsG0380014288.01.T01:CDS
CCACTATCAGAAATCCCAAA+AGG 0.540098 3:+52495561 None:intergenic
CCCTTCTGAACACCGCTGGA+TGG 0.542120 3:-52493070 MsG0380014288.01.T01:CDS
GAGATGAAACCATCTTCAAA+GGG 0.545150 3:+52498716 None:intergenic
AGAGATGAAACCATCTTCAA+AGG 0.545492 3:+52498715 None:intergenic
AGTTGGATGGTGGAGCAGCT+TGG 0.564658 3:-52494625 MsG0380014288.01.T01:CDS
GATTTATCCATAAAGTTGGA+TGG 0.565820 3:-52494638 MsG0380014288.01.T01:CDS
CATCTTTGGTAAACCACCAC+AGG 0.568016 3:+52493428 None:intergenic
ATTTCAGATAAAATAACAGA+AGG 0.571181 3:-52493651 MsG0380014288.01.T01:CDS
AATGTTATGATTGGAGAGAG+TGG 0.578714 3:-52495660 MsG0380014288.01.T01:CDS
AGGTTACAGGCATGCAAGTG+GGG 0.592851 3:-52494733 MsG0380014288.01.T01:CDS
AAGGTTACAGGCATGCAAGT+GGG 0.595478 3:-52494734 MsG0380014288.01.T01:CDS
CTGTTGATTTGAGTATGAAG+TGG 0.597135 3:-52498463 MsG0380014288.01.T01:CDS
CCATCCAGCGGTGTTCAGAA+GGG 0.597504 3:+52493070 None:intergenic
TTTCAGATAAAATAACAGAA+GGG 0.599116 3:-52493650 MsG0380014288.01.T01:CDS
GTACCTCAAAGTTACAAGAA+CGG 0.602332 3:-52493468 MsG0380014288.01.T01:CDS
TCCACTTGTTGGAAATGCTA+AGG 0.603870 3:-52495730 MsG0380014288.01.T01:CDS
TTGTTGATTTGAGTATGAAG+TGG 0.606189 3:-52495611 MsG0380014288.01.T01:CDS
TCAGTGATTATCAGAGAGAG+TGG 0.609569 3:-52498512 MsG0380014288.01.T01:CDS
CTTCTACTGATTCCAACAAG+TGG 0.610875 3:-52498749 MsG0380014288.01.T01:CDS
TTATCCATAAAGTTGGATGG+TGG 0.620779 3:-52494635 MsG0380014288.01.T01:CDS
CCCACTTGTTGGAAATGCTA+AGG 0.622044 3:-52498582 MsG0380014288.01.T01:CDS
GAAGGTTACAGGCATGCAAG+TGG 0.625055 3:-52494735 MsG0380014288.01.T01:intron
ATTGAGGAATTACTCAACAC+AGG 0.630147 3:+52493537 None:intergenic
CCTTAGCATTTCCAACAAGT+GGG 0.635969 3:+52498582 None:intergenic
AACTATGAATCTCCATCCAG+CGG 0.645452 3:+52493058 None:intergenic
ACCTGTTGCATGCATCTCAG+TGG 0.660833 3:-52492886 MsG0380014288.01.T01:intron
GTCCAATGTCTGACACATGT+CGG 0.661759 3:-52491992 MsG0380014288.01.T01:CDS
TCTGGTGTTATATCTAACAA+GGG 0.666920 3:-52498695 MsG0380014288.01.T01:CDS
TAAGTCACTTGGATGACTGG+TGG 0.690683 3:+52492975 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAGAAATAAATGATATTT+AGG - Chr3:52492693-52492712 MsG0380014288.01.T01:intron 10.0%
!! TTAAAGAATAATATACTATT+TGG + Chr3:52496404-52496423 None:intergenic 10.0%
!! TTAGAAATAAATGATATTTA+GGG - Chr3:52492694-52492713 MsG0380014288.01.T01:intron 10.0%
!! TTTGCATTTAAAAAATTAAA+AGG - Chr3:52493943-52493962 MsG0380014288.01.T01:intron 10.0%
!!! AAATTGAAGTATATTTTTTA+TGG - Chr3:52493701-52493720 MsG0380014288.01.T01:CDS 10.0%
!!! ATTTTTTAAAAGAAAAAGTT+AGG - Chr3:52497963-52497982 MsG0380014288.01.T01:intron 10.0%
!!! TTTTAATTTTTTAAATGCAA+AGG + Chr3:52493944-52493963 None:intergenic 10.0%
!!! TTTTTGATATTTAAATATCT+TGG - Chr3:52493665-52493684 MsG0380014288.01.T01:CDS 10.0%
!! AATAAACAAATATTTGAAAG+GGG + Chr3:52496641-52496660 None:intergenic 15.0%
!! AGAATCATAGAAAAAATAAT+TGG + Chr3:52497463-52497482 None:intergenic 15.0%
!! CAATAAACAAATATTTGAAA+GGG + Chr3:52496642-52496661 None:intergenic 15.0%
!! TCAATAAACAAATATTTGAA+AGG + Chr3:52496643-52496662 None:intergenic 15.0%
!! TTAAATTTAAAGAACAAAGA+AGG - Chr3:52496058-52496077 MsG0380014288.01.T01:intron 15.0%
!!! AAAAATATTTTCTTGTCATA+AGG + Chr3:52493990-52494009 None:intergenic 15.0%
!!! ATTTTTTAAGTGTGTTATTT+AGG + Chr3:52492978-52492997 None:intergenic 15.0%
!!! ATTTTTTTTGGAACTAATAT+TGG - Chr3:52493099-52493118 MsG0380014288.01.T01:CDS 15.0%
!!! CATTTTTAGAAAAATTAAAG+TGG - Chr3:52492998-52493017 MsG0380014288.01.T01:CDS 15.0%
!!! GATATCTTCATTATATTTTT+AGG + Chr3:52497012-52497031 None:intergenic 15.0%
!!! TTAAAATTTTGATACAATGA+AGG + Chr3:52494246-52494265 None:intergenic 15.0%
!!! TTTTTATACATAATACTGTT+TGG + Chr3:52497989-52498008 None:intergenic 15.0%
!! AAAATCAAGCTGAAAATTTA+TGG + Chr3:52493649-52493668 None:intergenic 20.0%
!! AATAAGCATAAAGAAGTTAA+TGG + Chr3:52497038-52497057 None:intergenic 20.0%
!! AATAGGATAACGTAATAAAT+AGG + Chr3:52496547-52496566 None:intergenic 20.0%
!! ACAATAAACATATACCTATA+AGG - Chr3:52494366-52494385 MsG0380014288.01.T01:intron 20.0%
!! ACATATTCCTATATTTATGT+AGG - Chr3:52493858-52493877 MsG0380014288.01.T01:intron 20.0%
!! ACCATTTATATACAATCTAT+TGG + Chr3:52495406-52495425 None:intergenic 20.0%
!! ATAGAAAAAATAATTGGCAA+TGG + Chr3:52497457-52497476 None:intergenic 20.0%
!! ATGTTAAGATAGAAAATAAC+GGG + Chr3:52496616-52496635 None:intergenic 20.0%
!! ATTGTATTAAAATGAACTGT+TGG - Chr3:52498503-52498522 MsG0380014288.01.T01:CDS 20.0%
!! ATTTCAGATAAAATAACAGA+AGG - Chr3:52497111-52497130 MsG0380014288.01.T01:intron 20.0%
!! CATAAAATTGTTGTAATCTA+AGG + Chr3:52498371-52498390 None:intergenic 20.0%
!! CATATTCCTATATTTATGTA+GGG - Chr3:52493859-52493878 MsG0380014288.01.T01:intron 20.0%
!! CATGTTAAGATAGAAAATAA+CGG + Chr3:52496617-52496636 None:intergenic 20.0%
!! CCATTTATATACAATCTATT+GGG + Chr3:52495405-52495424 None:intergenic 20.0%
!! GACTATTCATTATAATTTCA+TGG - Chr3:52494530-52494549 MsG0380014288.01.T01:intron 20.0%
!! GATCAAATGAGTTAAATATA+AGG - Chr3:52494024-52494043 MsG0380014288.01.T01:intron 20.0%
!! GTAAATCAGAATTTAAGTAT+TGG - Chr3:52498441-52498460 MsG0380014288.01.T01:CDS 20.0%
!! TACTCGTATGAAATATTTAT+AGG - Chr3:52492406-52492425 MsG0380014288.01.T01:CDS 20.0%
!! TCTAATATATTAAGTTTGAG+TGG - Chr3:52493145-52493164 MsG0380014288.01.T01:intron 20.0%
!! TTAAGAAAATTGCTTACAAT+TGG + Chr3:52496168-52496187 None:intergenic 20.0%
!! TTGTATTAAAATGAACTGTT+GGG - Chr3:52498504-52498523 MsG0380014288.01.T01:CDS 20.0%
!! TTTCAGATAAAATAACAGAA+GGG - Chr3:52497112-52497131 MsG0380014288.01.T01:intron 20.0%
!! TTTCGGTTATAATTATTGTT+TGG - Chr3:52498533-52498552 MsG0380014288.01.T01:CDS 20.0%
!!! AACAATTTGTTTATAAGTGA+GGG + Chr3:52495553-52495572 None:intergenic 20.0%
!!! AATTTTATGCATACTTGAAA+TGG - Chr3:52498382-52498401 MsG0380014288.01.T01:intron 20.0%
!!! ACAATAACTCTTTTCATATA+GGG - Chr3:52494334-52494353 MsG0380014288.01.T01:intron 20.0%
!!! ACTTTTTTTATAAGCTAACA+TGG + Chr3:52496863-52496882 None:intergenic 20.0%
!!! AGAAGTTATTGTAATTTGTA+GGG - Chr3:52495336-52495355 MsG0380014288.01.T01:intron 20.0%
!!! ATAACAATTGATGTTTTAGA+AGG - Chr3:52497841-52497860 MsG0380014288.01.T01:intron 20.0%
!!! GATGGATACAATATTTTTTT+TGG - Chr3:52493087-52493106 MsG0380014288.01.T01:CDS 20.0%
!!! GTTTTTTTTGAAAGTATTGT+TGG + Chr3:52494783-52494802 None:intergenic 20.0%
!!! TAACAATTTGTTTATAAGTG+AGG + Chr3:52495554-52495573 None:intergenic 20.0%
!!! TAGAAACTTTTGTTTCAAAA+AGG - Chr3:52493304-52493323 MsG0380014288.01.T01:intron 20.0%
!!! TAGAAGTTATTGTAATTTGT+AGG - Chr3:52495335-52495354 MsG0380014288.01.T01:intron 20.0%
!!! TTCTAATTATTTTGCCTAAT+TGG - Chr3:52497479-52497498 MsG0380014288.01.T01:intron 20.0%
!!! TTCTGTTATTTTATCTGAAA+TGG + Chr3:52497112-52497131 None:intergenic 20.0%
!!! TTCTTATTTTCTAGCTTAAA+CGG + Chr3:52498137-52498156 None:intergenic 20.0%
!!! TTCTTTTGAACTATCATTTT+TGG - Chr3:52493737-52493756 MsG0380014288.01.T01:intron 20.0%
!!! TTGAAGTATATTTTTTATGG+TGG - Chr3:52493704-52493723 MsG0380014288.01.T01:intron 20.0%
! AAAAAGGTTATGACTAGAAA+AGG - Chr3:52493320-52493339 MsG0380014288.01.T01:intron 25.0%
! AACTTCTTTATGCTTATTTC+AGG - Chr3:52497040-52497059 MsG0380014288.01.T01:intron 25.0%
! AAGGTATGATATTAGTTACT+GGG + Chr3:52493236-52493255 None:intergenic 25.0%
! AATACTTCGAATGTTATGAT+TGG - Chr3:52495093-52495112 MsG0380014288.01.T01:intron 25.0%
! ACAAGAACAATATATTGTCA+AGG - Chr3:52492934-52492953 MsG0380014288.01.T01:CDS 25.0%
! ACAATAAGTAAGTATATTGG+AGG - Chr3:52494398-52494417 MsG0380014288.01.T01:intron 25.0%
! ACTATTACATAAAACTCGTT+TGG - Chr3:52495695-52495714 MsG0380014288.01.T01:CDS 25.0%
! AGTTGCATGTTATAAATCAA+TGG - Chr3:52492826-52492845 MsG0380014288.01.T01:intron 25.0%
! ATTCGGTTATATTGAGTAAT+CGG - Chr3:52497525-52497544 MsG0380014288.01.T01:intron 25.0%
! ATTGAAACCTTTATCATCTT+TGG + Chr3:52497351-52497370 None:intergenic 25.0%
! CCCAATAGATTGTATATAAA+TGG - Chr3:52495402-52495421 MsG0380014288.01.T01:intron 25.0%
! GAAAAATGATACGAAGTTAA+TGG - Chr3:52495641-52495660 MsG0380014288.01.T01:CDS 25.0%
! GAAAACAAATGTTCTTAAGT+GGG - Chr3:52497921-52497940 MsG0380014288.01.T01:intron 25.0%
! GACTAATCATTACATATTCA+GGG + Chr3:52494215-52494234 None:intergenic 25.0%
! GATAAAATCATGAAGTTGTT+CGG + Chr3:52498166-52498185 None:intergenic 25.0%
! GATACAATAAGAATTACACA+AGG - Chr3:52493526-52493545 MsG0380014288.01.T01:CDS 25.0%
! GATATTTAAATATCTTGGAG+TGG - Chr3:52493670-52493689 MsG0380014288.01.T01:CDS 25.0%
! GATCAATATTCTATATGACA+TGG - Chr3:52498267-52498286 MsG0380014288.01.T01:intron 25.0%
! GTCATAAGGAAGAAAAAAAA+AGG + Chr3:52493976-52493995 None:intergenic 25.0%
! GTCATATAGAATATTGATCA+TGG + Chr3:52498266-52498285 None:intergenic 25.0%
! GTGACAATAAGTAAGTATAT+TGG - Chr3:52494395-52494414 MsG0380014288.01.T01:intron 25.0%
! TAAAAGTTATCCCAAGAATA+AGG + Chr3:52493910-52493929 None:intergenic 25.0%
! TATCTCAATTAGTAAGCAAA+CGG + Chr3:52495724-52495743 None:intergenic 25.0%
! TCAATTGCAATTGCAATTAA+CGG - Chr3:52497243-52497262 MsG0380014288.01.T01:intron 25.0%
! TGAAAACAAATGTTCTTAAG+TGG - Chr3:52497920-52497939 MsG0380014288.01.T01:intron 25.0%
! TGACTAATCATTACATATTC+AGG + Chr3:52494216-52494235 None:intergenic 25.0%
! TGATTTATAACATGCAACTA+TGG + Chr3:52492825-52492844 None:intergenic 25.0%
! TGGAGAACTTATTTATAACA+TGG - Chr3:52493615-52493634 MsG0380014288.01.T01:CDS 25.0%
! TTATCTAGTGATATTTGCTT+TGG + Chr3:52497171-52497190 None:intergenic 25.0%
! TTCAATCAAGTGATTAGAAA+TGG + Chr3:52498696-52498715 None:intergenic 25.0%
! TTTCTCAAACTATTATCGAT+CGG + Chr3:52495314-52495333 None:intergenic 25.0%
!! AAAGGTATGATATTAGTTAC+TGG + Chr3:52493237-52493256 None:intergenic 25.0%
!! AAGTTGTTTGATAATTTGTG+TGG - Chr3:52497613-52497632 MsG0380014288.01.T01:intron 25.0%
!! ATTGTAATTTGTAGGGTAAA+TGG - Chr3:52495343-52495362 MsG0380014288.01.T01:intron 25.0%
!! CACAATAACTCTTTTCATAT+AGG - Chr3:52494333-52494352 MsG0380014288.01.T01:intron 25.0%
!! GTAACTAATATCATACCTTT+TGG - Chr3:52493237-52493256 MsG0380014288.01.T01:intron 25.0%
!! TAATGGTTAAGTTAGTTTCT+AGG - Chr3:52495658-52495677 MsG0380014288.01.T01:CDS 25.0%
!! TATTGTTTGGTTTACCATAA+TGG - Chr3:52498546-52498565 MsG0380014288.01.T01:CDS 25.0%
!! TCTTTTCTAGGTTCAATATA+TGG - Chr3:52493384-52493403 MsG0380014288.01.T01:CDS 25.0%
!! TTTGGGTTAGATAAATTTGA+CGG - Chr3:52493458-52493477 MsG0380014288.01.T01:CDS 25.0%
!!! AAATAATTGGCAATGGATTA+TGG + Chr3:52497450-52497469 None:intergenic 25.0%
!!! AGATTACTGGTTTTGAATTA+TGG - Chr3:52498617-52498636 MsG0380014288.01.T01:CDS 25.0%
!!! AGTTTCTAGGATTCAAATAT+TGG - Chr3:52495671-52495690 MsG0380014288.01.T01:CDS 25.0%
!!! ATGTTGACTTCAAGTTAATA+GGG + Chr3:52494675-52494694 None:intergenic 25.0%
!!! ATTTTAGGAAACAATCTTTC+TGG - Chr3:52498342-52498361 MsG0380014288.01.T01:intron 25.0%
!!! GACTACTCATATTTTAATCT+CGG + Chr3:52492557-52492576 None:intergenic 25.0%
!!! TCAAGAGTTTCATTAGTTTT+TGG + Chr3:52494825-52494844 None:intergenic 25.0%
!!! TGATAATTTGTGTGGTTTTA+TGG - Chr3:52497621-52497640 MsG0380014288.01.T01:intron 25.0%
!!! TGGATTTTGTTTAAGAGTAA+TGG + Chr3:52494805-52494824 None:intergenic 25.0%
!!! TTATATTTTTAGGTCCTGTT+TGG + Chr3:52497002-52497021 None:intergenic 25.0%
AAAAGATCTCCTACTTGATT+TGG + Chr3:52498055-52498074 None:intergenic 30.0%
AAATTTAGAAGCTCAGATAG+AGG + Chr3:52496379-52496398 None:intergenic 30.0%
AAGCTATATAGGATAGCTTA+TGG - Chr3:52495883-52495902 MsG0380014288.01.T01:intron 30.0%
ACTAACATAATGCACAATCA+GGG + Chr3:52494275-52494294 None:intergenic 30.0%
ACTTATTTGAGCTTATCTAC+TGG - Chr3:52496745-52496764 MsG0380014288.01.T01:intron 30.0%
ACTTGATTGAAAGAAAGAGT+AGG - Chr3:52498705-52498724 MsG0380014288.01.T01:CDS 30.0%
ATCTTCTACATCACAAAAGA+AGG - Chr3:52493275-52493294 MsG0380014288.01.T01:intron 30.0%
ATGAGTAGTCTGATATTAGT+TGG - Chr3:52492567-52492586 MsG0380014288.01.T01:intron 30.0%
ATTAAGTCGTTTATCCAAAC+AGG - Chr3:52496985-52497004 MsG0380014288.01.T01:intron 30.0%
ATTGTCACATTAGTCCTTAT+AGG + Chr3:52494383-52494402 None:intergenic 30.0%
ATTTATAGGAACTCAGACAT+AGG - Chr3:52492420-52492439 MsG0380014288.01.T01:CDS 30.0%
ATTTGAGTATTAGCATGACT+GGG - Chr3:52493822-52493841 MsG0380014288.01.T01:intron 30.0%
CAATTGAACACCTTATTCTT+GGG - Chr3:52493897-52493916 MsG0380014288.01.T01:intron 30.0%
CGATTGTTGGAATTAATAGA+AGG + Chr3:52494867-52494886 None:intergenic 30.0%
CTAAAGCTGAAAACAACTTA+TGG - Chr3:52495851-52495870 MsG0380014288.01.T01:intron 30.0%
CTTGATTGAAAGAAAGAGTA+GGG - Chr3:52498706-52498725 MsG0380014288.01.T01:CDS 30.0%
GATAACGTAATAAATAGGAG+AGG + Chr3:52496542-52496561 None:intergenic 30.0%
GATACCATATTAGAAATCGT+TGG - Chr3:52495485-52495504 MsG0380014288.01.T01:intron 30.0%
GATTGTATATAAATGGTGAG+TGG - Chr3:52495409-52495428 MsG0380014288.01.T01:intron 30.0%
GATTTATCCATAAAGTTGGA+TGG - Chr3:52496124-52496143 MsG0380014288.01.T01:intron 30.0%
GGTATGTTCATAAGCTATAT+AGG - Chr3:52495872-52495891 MsG0380014288.01.T01:intron 30.0%
GTTAATTGCAATTGCAATTG+AGG + Chr3:52497244-52497263 None:intergenic 30.0%
TACTAATTGAGATACCTACT+TGG - Chr3:52495730-52495749 MsG0380014288.01.T01:CDS 30.0%
TACTTGAAATGGAGCAAAAT+AGG - Chr3:52498393-52498412 MsG0380014288.01.T01:intron 30.0%
TATGCAGTATTCTCAATCTT+AGG + Chr3:52492157-52492176 None:intergenic 30.0%
TATGCAGTATTCTCAATCTT+TGG + Chr3:52492157-52492176 None:intergenic 30.0%
TCAATTCAAGCTAACCATTA+TGG + Chr3:52498563-52498582 None:intergenic 30.0%
TCAATTGAACACCTTATTCT+TGG - Chr3:52493896-52493915 MsG0380014288.01.T01:intron 30.0%
TCACTAAATGTTTCGTTTGT+TGG - Chr3:52497198-52497217 MsG0380014288.01.T01:intron 30.0%
TCTGTCTGATATCATGATTA+AGG - Chr3:52492207-52492226 MsG0380014288.01.T01:intron 30.0%
TGGTATTGTGAAAATACACA+AGG + Chr3:52498676-52498695 None:intergenic 30.0%
TGGTTTACCAAAGATGATAA+AGG - Chr3:52497341-52497360 MsG0380014288.01.T01:intron 30.0%
TTCACACTTAAACCTAATAG+AGG + Chr3:52493044-52493063 None:intergenic 30.0%
TTCACTTCAAGCATTTATGT+CGG - Chr3:52497564-52497583 MsG0380014288.01.T01:intron 30.0%
TTGATTGAAAGAAAGAGTAG+GGG - Chr3:52498707-52498726 MsG0380014288.01.T01:CDS 30.0%
TTTCTCTATCAACAAATCCT+TGG + Chr3:52492104-52492123 None:intergenic 30.0%
! AAGTTGAGTCTTTTAGATCA+TGG - Chr3:52496088-52496107 MsG0380014288.01.T01:intron 30.0%
! ACAACTTCATTGACTATAAC+AGG - Chr3:52496423-52496442 MsG0380014288.01.T01:intron 30.0%
! ACAAGTTTTGCTACAAAGTT+TGG - Chr3:52493440-52493459 MsG0380014288.01.T01:CDS 30.0%
! CAAGTTTTGCTACAAAGTTT+GGG - Chr3:52493441-52493460 MsG0380014288.01.T01:CDS 30.0%
! CATTGATTGACATTGTTCTA+AGG - Chr3:52493567-52493586 MsG0380014288.01.T01:CDS 30.0%
! CTTTTCAAAAAGTAGTTGAG+TGG - Chr3:52498023-52498042 MsG0380014288.01.T01:intron 30.0%
! GCACTGATACTTTATATGAA+AGG + Chr3:52492772-52492791 None:intergenic 30.0%
! GGTATAGTTGTAGTATTTTC+TGG - Chr3:52492271-52492290 MsG0380014288.01.T01:intron 30.0%
! GTTGGAATTTGGATTTTGTT+CGG + Chr3:52494713-52494732 None:intergenic 30.0%
! TAATTTGTAGGGTAAATGGT+GGG - Chr3:52495347-52495366 MsG0380014288.01.T01:intron 30.0%
! TGACAGCTTTTTATCCAATT+AGG + Chr3:52497496-52497515 None:intergenic 30.0%
!! AAGGATTTGTTGATAGAGAA+AGG - Chr3:52492103-52492122 MsG0380014288.01.T01:intron 30.0%
!! CATAAGTTGTTTTCAGCTTT+AGG + Chr3:52495853-52495872 None:intergenic 30.0%
!! GATGTTGACTTCAAGTTAAT+AGG + Chr3:52494676-52494695 None:intergenic 30.0%
!! TCATGTGCTGTTGAAATTTT+AGG - Chr3:52498327-52498346 MsG0380014288.01.T01:intron 30.0%
!! TCTGGTGTTATATCTAACAA+GGG - Chr3:52492067-52492086 MsG0380014288.01.T01:intron 30.0%
!! TTAAGTGTGTTATTTAGGTG+AGG + Chr3:52492973-52492992 None:intergenic 30.0%
!! TTGAAAGTATTGTTGGAGAT+TGG + Chr3:52494776-52494795 None:intergenic 30.0%
!! TTGTTGATTTGAGTATGAAG+TGG - Chr3:52495151-52495170 MsG0380014288.01.T01:intron 30.0%
!!! CACTTGTCGAATTTTTTTAG+CGG + Chr3:52494597-52494616 None:intergenic 30.0%
!!! CATGGTCGATATTTTAAGTT+TGG - Chr3:52492505-52492524 MsG0380014288.01.T01:intron 30.0%
AAAGAGTAGCACCAATATCT+TGG + Chr3:52497813-52497832 None:intergenic 35.0%
AACAAAACTCTGATCCAAGT+AGG + Chr3:52495747-52495766 None:intergenic 35.0%
AATAAATAGGAGAGGACACA+TGG + Chr3:52496534-52496553 None:intergenic 35.0%
AATCCGTTCTTGTAACTTTG+AGG + Chr3:52497300-52497319 None:intergenic 35.0%
AATGTTATGATTGGAGAGAG+TGG - Chr3:52495102-52495121 MsG0380014288.01.T01:intron 35.0%
ACATTAAAGGCCTGATGTAA+GGG - Chr3:52496709-52496728 MsG0380014288.01.T01:intron 35.0%
ACGCCTTCAATCTTAAGATT+TGG + Chr3:52498750-52498769 None:intergenic 35.0%
ACTATTATCGATCGGTATCT+AGG + Chr3:52495306-52495325 None:intergenic 35.0%
AGAGATGAAACCATCTTCAA+AGG + Chr3:52492050-52492069 None:intergenic 35.0%
AGGTCCAACGATTTCTAATA+TGG + Chr3:52495492-52495511 None:intergenic 35.0%
AGTATGGCTTATCAGAAACA+TGG + Chr3:52496192-52496211 None:intergenic 35.0%
AGTCAGCCCTACATAAATAT+AGG + Chr3:52493868-52493887 None:intergenic 35.0%
ATAAATAGGAGAGGACACAT+GGG + Chr3:52496533-52496552 None:intergenic 35.0%
ATATTAGTTACTGGGAAGAC+CGG + Chr3:52493228-52493247 None:intergenic 35.0%
ATCATCTCGTCTCACATTAA+AGG - Chr3:52496696-52496715 MsG0380014288.01.T01:intron 35.0%
ATGGTGCATGATTTACAGTA+TGG - Chr3:52493403-52493422 MsG0380014288.01.T01:CDS 35.0%
ATTGAGGAATTACTCAACAC+AGG + Chr3:52497228-52497247 None:intergenic 35.0%
CAAAACCAGTAATCTAGTAG+TGG + Chr3:52498612-52498631 None:intergenic 35.0%
CAAGTGACTTACCAAGATAT+TGG - Chr3:52497799-52497818 MsG0380014288.01.T01:intron 35.0%
CAATATCTTGGTAAGTCACT+TGG + Chr3:52497801-52497820 None:intergenic 35.0%
CAATTAACGGTTTATTCGCA+AGG - Chr3:52497256-52497275 MsG0380014288.01.T01:intron 35.0%
CTTGTTAAAGAGTCTCACAT+TGG + Chr3:52495600-52495619 None:intergenic 35.0%
GAAAGAACGTATGAACAGTA+TGG + Chr3:52496208-52496227 None:intergenic 35.0%
GAACCTAGAAAAGAAAAGAG+AGG + Chr3:52493378-52493397 None:intergenic 35.0%
GACTAACATAATGCACAATC+AGG + Chr3:52494276-52494295 None:intergenic 35.0%
GAGATGAAACCATCTTCAAA+GGG + Chr3:52492049-52492068 None:intergenic 35.0%
GAGTTATTGTGAACATTGAG+AGG + Chr3:52494324-52494343 None:intergenic 35.0%
GATACTTTATATGAAAGGCG+TGG + Chr3:52492767-52492786 None:intergenic 35.0%
GATTTGAGTATTAGCATGAC+TGG - Chr3:52493821-52493840 MsG0380014288.01.T01:intron 35.0%
GCACCAAATCTTAAGATTGA+AGG - Chr3:52498744-52498763 MsG0380014288.01.T01:CDS 35.0%
GGATAACATCAGATAACAGA+TGG + Chr3:52495579-52495598 None:intergenic 35.0%
GGATATCGCTTGTATAATTG+CGG + Chr3:52497730-52497749 None:intergenic 35.0%
GGGAGATTTATCCATAAAGT+TGG - Chr3:52496120-52496139 MsG0380014288.01.T01:intron 35.0%
GGTATTGTTGTAGTTGTTAC+TGG - Chr3:52495123-52495142 MsG0380014288.01.T01:intron 35.0%
GTACCTCAAAGTTACAAGAA+CGG - Chr3:52497294-52497313 MsG0380014288.01.T01:intron 35.0%
GTAGTCTGATATTAGTTGGA+CGG - Chr3:52492571-52492590 MsG0380014288.01.T01:intron 35.0%
TGCTGAGACAGAAAAATCAT+TGG + Chr3:52498212-52498231 None:intergenic 35.0%
TTAATAGGGTATGGATCAAC+TGG + Chr3:52494661-52494680 None:intergenic 35.0%
TTAGATCATGGATGCTATGT+GGG - Chr3:52496100-52496119 MsG0380014288.01.T01:intron 35.0%
TTATCCATAAAGTTGGATGG+TGG - Chr3:52496127-52496146 MsG0380014288.01.T01:intron 35.0%
TTCTACATCACAAAAGAAGG+CGG - Chr3:52493278-52493297 MsG0380014288.01.T01:intron 35.0%
TTTAGATCATGGATGCTATG+TGG - Chr3:52496099-52496118 MsG0380014288.01.T01:intron 35.0%
TTTGAAGATGGTTTCATCTC+TGG - Chr3:52492049-52492068 MsG0380014288.01.T01:intron 35.0%
TTTGAGTATTAGCATGACTG+GGG - Chr3:52493823-52493842 MsG0380014288.01.T01:intron 35.0%
! AAGTTACAAGAACGGATTCA+AGG - Chr3:52497302-52497321 MsG0380014288.01.T01:intron 35.0%
! CAAGGGTCTTGATTTTCTTA+AGG - Chr3:52494936-52494955 MsG0380014288.01.T01:intron 35.0%
! CGATTTTGCGAGGTTATATT+AGG + Chr3:52495512-52495531 None:intergenic 35.0%
! CTCTACTCAACATTTTCAAC+CGG - Chr3:52494171-52494190 MsG0380014288.01.T01:intron 35.0%
! GACTTCAAGTTAATAGGGTA+TGG + Chr3:52494670-52494689 None:intergenic 35.0%
! GTAATTTGTAGGGTAAATGG+TGG - Chr3:52495346-52495365 MsG0380014288.01.T01:intron 35.0%
! TATAACCAACCCTTTGAAGA+TGG - Chr3:52494889-52494908 MsG0380014288.01.T01:intron 35.0%
! TATGTTCAACCCTTTGAAGA+TGG - Chr3:52492037-52492056 MsG0380014288.01.T01:CDS 35.0%
! TCTACTCAACATTTTCAACC+GGG - Chr3:52494172-52494191 MsG0380014288.01.T01:intron 35.0%
! TTGATTCCATTTGGGATTTC+TGG - Chr3:52492343-52492362 MsG0380014288.01.T01:intron 35.0%
!! AAAGAAAGAGTAGGGGTATT+CGG - Chr3:52498714-52498733 MsG0380014288.01.T01:CDS 35.0%
!! AATTGGTTGGTGTTGGAATT+TGG + Chr3:52494724-52494743 None:intergenic 35.0%
!! ACTGCACATAAGTCTTATTC+AGG - Chr3:52498419-52498438 MsG0380014288.01.T01:CDS 35.0%
!! CTCTGGTGTTATATCTAACA+AGG - Chr3:52492066-52492085 MsG0380014288.01.T01:intron 35.0%
!! CTGTTGATTTGAGTATGAAG+TGG - Chr3:52492299-52492318 MsG0380014288.01.T01:intron 35.0%
!! GAGGTATTTTCGATTTTCTG+TGG + Chr3:52496360-52496379 None:intergenic 35.0%
!! TACTCTGAGATTATCTCGAT+TGG - Chr3:52493592-52493611 MsG0380014288.01.T01:CDS 35.0%
!! TATTGTTGGAGATTGGTTTG+TGG + Chr3:52494769-52494788 None:intergenic 35.0%
!!! CTTTTGGGATTTCTGATAGT+GGG - Chr3:52495202-52495221 MsG0380014288.01.T01:intron 35.0%
!!! TGTCGAATTTTTTTAGCGGT+TGG + Chr3:52494593-52494612 None:intergenic 35.0%
AACTATGAATCTCCATCCAG+CGG + Chr3:52497707-52497726 None:intergenic 40.0%
AAGCTAACATGGAGAGCTTA+TGG + Chr3:52496852-52496871 None:intergenic 40.0%
ACATAGGACACGACAAAAGA+AGG - Chr3:52492436-52492455 MsG0380014288.01.T01:CDS 40.0%
ACCTTAGCATTTCCAACAAG+TGG + Chr3:52492184-52492203 None:intergenic 40.0%
ACTGCATATGTTCCACTTGT+TGG - Chr3:52495021-52495040 MsG0380014288.01.T01:intron 40.0%
AGCTGTCAGAAATGACGATT+CGG - Chr3:52497508-52497527 MsG0380014288.01.T01:intron 40.0%
AGTCTCGCGTCAATTATAGA+TGG - Chr3:52493069-52493088 MsG0380014288.01.T01:CDS 40.0%
CACATTAAAGGCCTGATGTA+AGG - Chr3:52496708-52496727 MsG0380014288.01.T01:intron 40.0%
CAGTGACAACTAGAGTAGTT+CGG + Chr3:52496585-52496604 None:intergenic 40.0%
CCACTATCAGAAATCCCAAA+AGG + Chr3:52495204-52495223 None:intergenic 40.0%
CCTAGAAAAGAAAAGAGAGG+TGG + Chr3:52493375-52493394 None:intergenic 40.0%
CCTTAGCATTTCCAACAAGT+GGG + Chr3:52492183-52492202 None:intergenic 40.0%
CTCTTATGGTCCTAGATCAT+CGG - Chr3:52493185-52493204 MsG0380014288.01.T01:intron 40.0%
CTTCAAGCATTTATGTCGGA+TGG - Chr3:52497568-52497587 MsG0380014288.01.T01:intron 40.0%
GAATTGGTTACGTAGGTATG+AGG + Chr3:52494747-52494766 None:intergenic 40.0%
GACACGACAAAAGAAGGATT+TGG - Chr3:52492442-52492461 MsG0380014288.01.T01:CDS 40.0%
GACTAAAGTGACTATTACCC+CGG + Chr3:52494193-52494212 None:intergenic 40.0%
GGTATGAGTAGGGTTGAAAA+GGG + Chr3:52494572-52494591 None:intergenic 40.0%
GTGATGTAGAAGATCAGACA+AGG + Chr3:52493269-52493288 None:intergenic 40.0%
GTTACGTAGGTATGAGGAAT+TGG + Chr3:52494741-52494760 None:intergenic 40.0%
GTTGCAAAAGGGAAAATCCT+AGG + Chr3:52496463-52496482 None:intergenic 40.0%
GTTTGTGGAATTGGTTACGT+AGG + Chr3:52494754-52494773 None:intergenic 40.0%
TAGTGGGACTGCTTCAATTA+AGG - Chr3:52492366-52492385 MsG0380014288.01.T01:CDS 40.0%
TATCGATGAACTAGCTGATC+AGG - Chr3:52497669-52497688 MsG0380014288.01.T01:intron 40.0%
TATTAGTTACTGGGAAGACC+GGG + Chr3:52493227-52493246 None:intergenic 40.0%
TCAGTGATTATCAGAGAGAG+TGG - Chr3:52492250-52492269 MsG0380014288.01.T01:intron 40.0%
TGAAACCATCTTCAAAGGGT+TGG + Chr3:52492045-52492064 None:intergenic 40.0%
TGACTAGAGAACAGAGTAGT+GGG + Chr3:52496271-52496290 None:intergenic 40.0%
TGCAGCATAAGCAAGAACAA+GGG + Chr3:52498294-52498313 None:intergenic 40.0%
TGGAGCTTTCCAAATCAAGT+AGG - Chr3:52498043-52498062 MsG0380014288.01.T01:intron 40.0%
TGGTATGAGTAGGGTTGAAA+AGG + Chr3:52494573-52494592 None:intergenic 40.0%
TGTTGTGTAGGTGTTCAACA+TGG - Chr3:52492722-52492741 MsG0380014288.01.T01:intron 40.0%
TTAATCTGCATGTCGTCGTT+TGG + Chr3:52497751-52497770 None:intergenic 40.0%
TTACACCCTGCACATAAATC+CGG - Chr3:52492620-52492639 MsG0380014288.01.T01:intron 40.0%
TTGACTAGAGAACAGAGTAG+TGG + Chr3:52496272-52496291 None:intergenic 40.0%
! AGAGTAGTTCGGTGATTAGT+TGG + Chr3:52496574-52496593 None:intergenic 40.0%
! AGCTCTTGGTTGATTCCATT+TGG - Chr3:52492334-52492353 MsG0380014288.01.T01:intron 40.0%
! AGGATTTTCCCTTTTGCAAC+AGG - Chr3:52496463-52496482 MsG0380014288.01.T01:intron 40.0%
! AGTTCTTGGTTGCTTCCTTT+TGG - Chr3:52495186-52495205 MsG0380014288.01.T01:intron 40.0%
! ATGATCTAGGACCATAAGAG+GGG + Chr3:52493185-52493204 None:intergenic 40.0%
! CACTTGTTGGAATCAGTAGA+AGG + Chr3:52492015-52492034 None:intergenic 40.0%
! CCACCTCTCTTTTCTTTTCT+AGG - Chr3:52493372-52493391 MsG0380014288.01.T01:CDS 40.0%
! CTACTCAACATTTTCAACCG+GGG - Chr3:52494173-52494192 MsG0380014288.01.T01:intron 40.0%
! GAACTGTTGGGTTAGAGTTT+CGG - Chr3:52498516-52498535 MsG0380014288.01.T01:CDS 40.0%
! GATGATCTAGGACCATAAGA+GGG + Chr3:52493186-52493205 None:intergenic 40.0%
! GCTCTTGGTTGATTCCATTT+GGG - Chr3:52492335-52492354 MsG0380014288.01.T01:intron 40.0%
! GGAAGTATACTGTCAGTTCT+TGG - Chr3:52495172-52495191 MsG0380014288.01.T01:intron 40.0%
! GGATTTTCCCTTTTGCAACA+GGG - Chr3:52496464-52496483 MsG0380014288.01.T01:intron 40.0%
! GGTGATTAGTTGGACGAAAT+AGG + Chr3:52496564-52496583 None:intergenic 40.0%
! GGTTGGTTATAAGCGATTGT+TGG + Chr3:52494880-52494899 None:intergenic 40.0%
! GTTCTTGGTTGCTTCCTTTT+GGG - Chr3:52495187-52495206 MsG0380014288.01.T01:intron 40.0%
! TATGAGGAATTGGTTGGTGT+TGG + Chr3:52494731-52494750 None:intergenic 40.0%
! TCCACTTGTTGGAAATGCTA+AGG - Chr3:52495032-52495051 MsG0380014288.01.T01:intron 40.0%
! TCTGAGATTATCTCGATTGG+TGG - Chr3:52493595-52493614 MsG0380014288.01.T01:CDS 40.0%
! TTAGCATGACTGGGGTTTTT+AGG - Chr3:52493831-52493850 MsG0380014288.01.T01:intron 40.0%
! TTTAGCGGTTGGTATGAGTA+GGG + Chr3:52494582-52494601 None:intergenic 40.0%
! TTTAGGGTGTCATGTTGTGT+AGG - Chr3:52492710-52492729 MsG0380014288.01.T01:intron 40.0%
!! CATTTGGGATTTCTGGTAGT+GGG - Chr3:52492350-52492369 MsG0380014288.01.T01:CDS 40.0%
!! CTTCTACTGATTCCAACAAG+TGG - Chr3:52492013-52492032 MsG0380014288.01.T01:CDS 40.0%
!! TGGAGATTGGTTTGTGGAAT+TGG + Chr3:52494763-52494782 None:intergenic 40.0%
!! TTTTAGCGGTTGGTATGAGT+AGG + Chr3:52494583-52494602 None:intergenic 40.0%
!!! CCTTTTGGGATTTCTGATAG+TGG - Chr3:52495201-52495220 MsG0380014288.01.T01:intron 40.0%
!!! TTTGTGTGGTTTTATGGCTC+AGG - Chr3:52497627-52497646 MsG0380014288.01.T01:intron 40.0%
AAAGAGAGGTGGAGTCACAA+TGG + Chr3:52493364-52493383 None:intergenic 45.0%
AAGGTTACAGGCATGCAAGT+GGG - Chr3:52496028-52496047 MsG0380014288.01.T01:intron 45.0%
ACTGCATATGTCCCACTTGT+TGG - Chr3:52492169-52492188 MsG0380014288.01.T01:intron 45.0%
AGCAATGACCCTGTTGCAAA+AGG + Chr3:52496475-52496494 None:intergenic 45.0%
AGGAGAATGTCTTTCCTCCT+AGG - Chr3:52496443-52496462 MsG0380014288.01.T01:intron 45.0%
ATTAGTTACTGGGAAGACCG+GGG + Chr3:52493226-52493245 None:intergenic 45.0%
CAGACAAGGCTACAACCAAA+AGG + Chr3:52493255-52493274 None:intergenic 45.0%
CAGTAATCTAGTAGTGGCCA+CGG + Chr3:52498606-52498625 None:intergenic 45.0%
CATCTTTGGTAAACCACCAC+AGG + Chr3:52497337-52497356 None:intergenic 45.0%
CCACTACCAGAAATCCCAAA+TGG + Chr3:52492352-52492371 None:intergenic 45.0%
CGAACTACTCTAGTTGTCAC+TGG - Chr3:52496583-52496602 MsG0380014288.01.T01:intron 45.0%
CGTAGGTATGAGGAATTGGT+TGG + Chr3:52494737-52494756 None:intergenic 45.0%
CTGCAGCATAAGCAAGAACA+AGG + Chr3:52498295-52498314 None:intergenic 45.0%
CTTGTTCTTGCTTATGCTGC+AGG - Chr3:52498293-52498312 MsG0380014288.01.T01:intron 45.0%
GCAAAAGGGAAAATCCTAGG+AGG + Chr3:52496460-52496479 None:intergenic 45.0%
GCAATGACCCTGTTGCAAAA+GGG + Chr3:52496474-52496493 None:intergenic 45.0%
GCAGCATAAGCAAGAACAAG+GGG + Chr3:52498293-52498312 None:intergenic 45.0%
GGTTGAACATAGCCACTTGT+TGG + Chr3:52492028-52492047 None:intergenic 45.0%
GTCCAATGTCTGACACATGT+CGG - Chr3:52498770-52498789 MsG0380014288.01.T01:CDS 45.0%
TAAGTCACTTGGATGACTGG+TGG + Chr3:52497790-52497809 None:intergenic 45.0%
TATGGTCAAGTGCATGCTCA+AGG - Chr3:52498635-52498654 MsG0380014288.01.T01:CDS 45.0%
TCAGAGACGAGACCTCTATT+AGG - Chr3:52493029-52493048 MsG0380014288.01.T01:CDS 45.0%
TCCAAACAGACCCTTACATC+AGG + Chr3:52496722-52496741 None:intergenic 45.0%
TCGAACCGGATTTATGTGCA+GGG + Chr3:52492628-52492647 None:intergenic 45.0%
TGCCATGTTTGGAAGGTTAC+AGG - Chr3:52496016-52496035 MsG0380014288.01.T01:intron 45.0%
TGCCTGTAACCTTCCAAACA+TGG + Chr3:52496021-52496040 None:intergenic 45.0%
TGCTACCAAGATTCCGCATT+CGG + Chr3:52495436-52495455 None:intergenic 45.0%
TGCTCCACCATCCAACTTTA+TGG + Chr3:52496134-52496153 None:intergenic 45.0%
TGGTAAGTCACTTGGATGAC+TGG + Chr3:52497793-52497812 None:intergenic 45.0%
TGTGTAAGTCTGTGTCGAAC+CGG + Chr3:52492642-52492661 None:intergenic 45.0%
TTCAAGGTTTCTTCTGCCTG+TGG - Chr3:52497318-52497337 MsG0380014288.01.T01:intron 45.0%
! ACATCACAAGCGATTTTGCG+AGG + Chr3:52495522-52495541 None:intergenic 45.0%
! CAAGGGTCTTGATTTTGCCA+AGG - Chr3:52492084-52492103 MsG0380014288.01.T01:intron 45.0%
! CCCACTTGTTGGAAATGCTA+AGG - Chr3:52492180-52492199 MsG0380014288.01.T01:intron 45.0%
! CGATGATCTAGGACCATAAG+AGG + Chr3:52493187-52493206 None:intergenic 45.0%
! GAAAGCGGAAACTTGATAGC+AGG - Chr3:52495376-52495395 MsG0380014288.01.T01:intron 45.0%
! GGAAGTATACTGTGAGCTCT+TGG - Chr3:52492320-52492339 MsG0380014288.01.T01:intron 45.0%
! TGATCTAGGACCATAAGAGG+GGG + Chr3:52493184-52493203 None:intergenic 45.0%
! TTTGTAGGGTAAATGGTGGG+TGG - Chr3:52495350-52495369 MsG0380014288.01.T01:intron 45.0%
!! AATGGTGGGTGGTTTGAAAG+CGG - Chr3:52495361-52495380 MsG0380014288.01.T01:intron 45.0%
!! CCATTTGGGATTTCTGGTAG+TGG - Chr3:52492349-52492368 MsG0380014288.01.T01:CDS 45.0%
!! ATGTATAAAAAATAAATTTA+AGG - Chr3:52497998-52498017 MsG0380014288.01.T01:intron 5.0%
AAGGTTTCTTCTGCCTGTGG+TGG - Chr3:52497321-52497340 MsG0380014288.01.T01:intron 50.0%
AAGTGCAACTACTTGTCGCG+TGG - Chr3:52494612-52494631 MsG0380014288.01.T01:intron 50.0%
AATGGTGAGTGGTCCGAATG+CGG - Chr3:52495420-52495439 MsG0380014288.01.T01:intron 50.0%
ACCACTGAGATGCATGCAAC+AGG + Chr3:52497880-52497899 None:intergenic 50.0%
ACCTGTTGCATGCATCTCAG+TGG - Chr3:52497876-52497895 MsG0380014288.01.T01:intron 50.0%
AGGTTACAGGCATGCAAGTG+GGG - Chr3:52496029-52496048 MsG0380014288.01.T01:intron 50.0%
CGTGGCCACTACTAGATTAC+TGG - Chr3:52498604-52498623 MsG0380014288.01.T01:CDS 50.0%
CTCCGACATGTGTCAGACAT+TGG + Chr3:52498775-52498794 None:intergenic 50.0%
GAAGGTTACAGGCATGCAAG+TGG - Chr3:52496027-52496046 MsG0380014288.01.T01:intron 50.0%
GAGTTGTGCTGTGCCATGTT+TGG - Chr3:52496005-52496024 MsG0380014288.01.T01:intron 50.0%
GCAGTTTGCGCATGTGATCA+TGG - Chr3:52492487-52492506 MsG0380014288.01.T01:intron 50.0%
GCCTGATGTAAGGGTCTGTT+TGG - Chr3:52496718-52496737 MsG0380014288.01.T01:intron 50.0%
GTCGAACCGGATTTATGTGC+AGG + Chr3:52492629-52492648 None:intergenic 50.0%
GTTGCATGCATCTCAGTGGT+AGG - Chr3:52497880-52497899 MsG0380014288.01.T01:intron 50.0%
TAGTAGTGGCCACGGTTAAC+AGG + Chr3:52498598-52498617 None:intergenic 50.0%
TCTGCCACAACCGATGATCT+AGG + Chr3:52493198-52493217 None:intergenic 50.0%
TGTGACATCTCCCCCTCTTA+TGG - Chr3:52493171-52493190 MsG0380014288.01.T01:intron 50.0%
TGTGCTGTGCCATGTTTGGA+AGG - Chr3:52496009-52496028 MsG0380014288.01.T01:intron 50.0%
TTAGTTACTGGGAAGACCGG+GGG + Chr3:52493225-52493244 None:intergenic 50.0%
! AAGTGCATGCTCAAGGTGCT+AGG - Chr3:52498642-52498661 MsG0380014288.01.T01:CDS 50.0%
! GAATGCGGAATCTTGGTAGC+AGG - Chr3:52495435-52495454 MsG0380014288.01.T01:intron 50.0%
! TGGTCCTAGATCATCGGTTG+TGG - Chr3:52493191-52493210 MsG0380014288.01.T01:intron 50.0%
!!! TGTGGTTTTATGGCTCAGGC+AGG - Chr3:52497631-52497650 MsG0380014288.01.T01:intron 50.0%
AGAGCCTCTTCAAGATCCGC+TGG + Chr3:52495465-52495484 None:intergenic 55.0%
AGGAGAGGACACATGGGAAG+AGG + Chr3:52496527-52496546 None:intergenic 55.0%
CCATCCAGCGGTGTTCAGAA+GGG + Chr3:52497695-52497714 None:intergenic 55.0%
GAGCCTCTTCAAGATCCGCT+GGG + Chr3:52495464-52495483 None:intergenic 55.0%
GCGTGGTTCACGAGCTCATA+TGG - Chr3:52494629-52494648 MsG0380014288.01.T01:CDS 55.0%
GGAGAGGACACATGGGAAGA+GGG + Chr3:52496526-52496545 None:intergenic 55.0%
GTGGTCCGAATGCGGAATCT+TGG - Chr3:52495428-52495447 MsG0380014288.01.T01:intron 55.0%
TCCATCCAGCGGTGTTCAGA+AGG + Chr3:52497696-52497715 None:intergenic 55.0%
TTGCCCAGCGGATCTTGAAG+AGG - Chr3:52495458-52495477 MsG0380014288.01.T01:intron 55.0%
!! AGTTGGATGGTGGAGCAGCT+TGG - Chr3:52496137-52496156 MsG0380014288.01.T01:intron 55.0%
CCCTTCTGAACACCGCTGGA+TGG - Chr3:52497692-52497711 MsG0380014288.01.T01:intron 60.0%
CGTGACTCGCCTGTTAACCG+TGG - Chr3:52498586-52498605 MsG0380014288.01.T01:CDS 60.0%
! CTTGGTAGCAGGTTGCCCAG+CGG - Chr3:52495446-52495465 MsG0380014288.01.T01:intron 60.0%
CAGGCCCTTCTGAACACCGC+TGG - Chr3:52497688-52497707 MsG0380014288.01.T01:intron 65.0%
GGTTGTGGCAGATGCTCCCC+CGG - Chr3:52493206-52493225 MsG0380014288.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 52491980 52498804 52491980 ID=MsG0380014288.01;Name=MsG0380014288.01
Chr3 mRNA 52491980 52498804 52491980 ID=MsG0380014288.01.T01;Parent=MsG0380014288.01;Name=MsG0380014288.01.T01;_AED=0.35;_eAED=0.38;_QI=0|0.66|0.57|1|1|1|7|0|544
Chr3 exon 52498397 52498804 52498397 ID=MsG0380014288.01.T01:exon:10329;Parent=MsG0380014288.01.T01
Chr3 exon 52495545 52495826 52495545 ID=MsG0380014288.01.T01:exon:10328;Parent=MsG0380014288.01.T01
Chr3 exon 52494614 52494753 52494614 ID=MsG0380014288.01.T01:exon:10327;Parent=MsG0380014288.01.T01
Chr3 exon 52493371 52493722 52493371 ID=MsG0380014288.01.T01:exon:10326;Parent=MsG0380014288.01.T01
Chr3 exon 52492887 52493135 52492887 ID=MsG0380014288.01.T01:exon:10325;Parent=MsG0380014288.01.T01
Chr3 exon 52492344 52492469 52492344 ID=MsG0380014288.01.T01:exon:10324;Parent=MsG0380014288.01.T01
Chr3 exon 52491980 52492057 52491980 ID=MsG0380014288.01.T01:exon:10323;Parent=MsG0380014288.01.T01
Chr3 CDS 52498397 52498804 52498397 ID=MsG0380014288.01.T01:cds;Parent=MsG0380014288.01.T01
Chr3 CDS 52495545 52495826 52495545 ID=MsG0380014288.01.T01:cds;Parent=MsG0380014288.01.T01
Chr3 CDS 52494614 52494753 52494614 ID=MsG0380014288.01.T01:cds;Parent=MsG0380014288.01.T01
Chr3 CDS 52493371 52493722 52493371 ID=MsG0380014288.01.T01:cds;Parent=MsG0380014288.01.T01
Chr3 CDS 52492887 52493135 52492887 ID=MsG0380014288.01.T01:cds;Parent=MsG0380014288.01.T01
Chr3 CDS 52492344 52492469 52492344 ID=MsG0380014288.01.T01:cds;Parent=MsG0380014288.01.T01
Chr3 CDS 52491980 52492057 52491980 ID=MsG0380014288.01.T01:cds;Parent=MsG0380014288.01.T01
Gene Sequence

>MsG0380014288.01.T01

ATGACACTCTTGAATCTCTTCTTTCTATTATACCTTCTACTGATTCCAACAAGTGGCTATGTTCAACCCTTTGAAGATGGTTTCATCTCTGGTGTTATATCTAACAAGGGTCTTGATTTTGCCAAGGATTTGTTGATAGAGAAATGCATTGAAACAATTGTTCTTCTTAAGTTACCTAAGATTGAGAATACTGCATATGTCCCACTTGTTGGAAATGCTAAGGTGACTCTGTCTGATATCATGATTAAGGATGTTCAAGTTAATTCTTCTTCAGTGATTATCAGAGAGAGTGGTATAGTTGTAGTATTTTCTGGTGCTACTGTTGATTTGAGTATGAAGTGGAAGTATACTGTGAGCTCTTGGTTGATTCCATTTGGGATTTCTGGTAGTGGGACTGCTTCAATTAAGGATTTGTTGATAGAGAAAGGTATTGAAACTATTGTTTATGTTAAGTTACCAAAGATTGAGAATACTGCATATGTTCCACTTGTTGGAAATGCTAAGGTGACTCTGTCTGATATCATGATTAAGGATGTTCAAGTTAATACTTCGAATGTTATGATTGGAGAGAGTGGTATTGTTGTAGTTGTTACTGGTGCTATTGTTGATTTGAGTATGAAGTGGAAGTATACTGTCAGTTCTTGGTTGCTTCCTTTTGGGATTTCTGATAGTGGGACTGCTTCAATTAAGGTTACAGGCATGCAAGTGGGGCTTACATTAAATTTAAAGAACAAAGAAGGAACTCTTAAGTTGAGTCTTTTAGATCATGGATGCTATGTGGGAGATTTATCCATAAAGTTGGATGGTGGAGCAGCTTGGCTTTACCAATTGCTAGTAGATGCTTTTCAAGATATTATAGCATCTTCAGTAGAAGAAGCCATTTCAGATAAAATAACAGAAGGGATAGTAAAGCTTGATAATGTTTTGCAAGCTCTTCCAAAGCAAATATCACTAGATAAAACTGTTTCACTAAATGTTTCGTTTGTTGGCAATCCTGTGTTGAGTAATTCCTCAATTGCAATTGCAATTAACGGTTTATTCGCAAGGACAAGTGAAGTTTTTGTACCTCAAAGTTACAAGAACGGATTCAAGGTTTCTTCTGCCTGTGGTGGTTTACCAAAGATGATAAAGGTTTCAATACATGAAGATGTGTTCAAATCTGCTTCTCTAGTTTACTTCAATGCAGGTAAATTGCAAATGATTATCGATGAACTAGCTGATCAGGCCCTTCTGAACACCGCTGGATGGAGATTCATAGTTCCGCAATTATACAAGCGATATCCAAACGACGACATGCAGATTAATATCTCTGCATCATCTCCACCAGTCATCCAAGTGACTTACCAAGATATTGGTGCTACTCTTTCTGTAGATATAACAATTGATGTTTTAGAAGGCAGTGAAGTCATACCTGTTGCATGCATCTCAGTGGATATAAGTGCTTCATGTGCTGTTGAAATTTTAGGAAACAATCTTTCTGGTAGCCTTAGATTACAACAATTTTATGCATACTTGAAATGGAGCAAAATAGGAAAACTGCACATAAGTCTTATTCAGGGGTATTCGGCTATGAAGCACCAAATCTTAAGATTGAAGGCGTGTCCAATGTCTGACACATGTCGGAGTCAATACTGA
Protein sequence

>MsG0380014288.01.T01

MTLLNLFFLLYLLLIPTSGYVQPFEDGFISGVISNKGLDFAKDLLIEKCIETIVLLKLPKIENTAYVPLVGNAKVTLSDIMIKDVQVNSSSVIIRESGIVVVFSGATVDLSMKWKYTVSSWLIPFGISGSGTASIKDLLIEKGIETIVYVKLPKIENTAYVPLVGNAKVTLSDIMIKDVQVNTSNVMIGESGIVVVVTGAIVDLSMKWKYTVSSWLLPFGISDSGTASIKVTGMQVGLTLNLKNKEGTLKLSLLDHGCYVGDLSIKLDGGAAWLYQLLVDAFQDIIASSVEEAISDKITEGIVKLDNVLQALPKQISLDKTVSLNVSFVGNPVLSNSSIAIAINGLFARTSEVFVPQSYKNGFKVSSACGGLPKMIKVSIHEDVFKSASLVYFNAGKLQMIIDELADQALLNTAGWRFIVPQLYKRYPNDDMQINISASSPPVIQVTYQDIGATLSVDITIDVLEGSEVIPVACISVDISASCAVEILGNNLSGSLRLQQFYAYLKWSKIGKLHISLIQGYSAMKHQILRLKACPMSDTCRSQY*