Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012249.01.T01 | XP_003598693.2 | 96.871 | 831 | 26 | 0 | 2 | 832 | 3 | 833 | 0 | 1617 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012249.01.T01 | Q10FT0 | 27.946 | 662 | 416 | 18 | 230 | 832 | 160 | 819 | 8.10E-44 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012249.01.T01 | A0A396INB7 | 96.871 | 831 | 26 | 0 | 2 | 832 | 3 | 833 | 0.0 | 1617 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180000097.01 | MsG0380012249.01 | -0.825585 | 4.326754e-54 | 3.960232e-51 |
| MsG0180000159.01 | MsG0380012249.01 | 0.801520 | 8.662444e-49 | 4.145461e-46 |
| MsG0180000198.01 | MsG0380012249.01 | 0.830925 | 2.231871e-55 | 2.385481e-52 |
| MsG0180000221.01 | MsG0380012249.01 | 0.808826 | 2.558471e-50 | 1.477769e-47 |
| MsG0180000627.01 | MsG0380012249.01 | 0.816160 | 6.380466e-52 | 4.486886e-49 |
| MsG0180001120.01 | MsG0380012249.01 | 0.808427 | 3.113473e-50 | 1.779759e-47 |
| MsG0180001122.01 | MsG0380012249.01 | 0.872035 | 4.332515e-67 | 1.785739e-63 |
| MsG0180001971.01 | MsG0380012249.01 | 0.803291 | 3.739006e-49 | 1.871798e-46 |
| MsG0180002088.01 | MsG0380012249.01 | 0.831770 | 1.382797e-55 | 1.515660e-52 |
| MsG0180003193.01 | MsG0380012249.01 | 0.805963 | 1.035748e-49 | 5.554174e-47 |
| MsG0180004112.01 | MsG0380012249.01 | 0.800273 | 1.557270e-48 | 7.220714e-46 |
| MsG0180005278.01 | MsG0380012249.01 | 0.802293 | 6.010863e-49 | 2.933596e-46 |
| MsG0180006054.01 | MsG0380012249.01 | 0.805478 | 1.309252e-49 | 6.933769e-47 |
| MsG0180006185.01 | MsG0380012249.01 | 0.840031 | 1.110323e-57 | 1.562015e-54 |
| MsG0380011744.01 | MsG0380012249.01 | 0.823170 | 1.599490e-53 | 1.366841e-50 |
| MsG0380012184.01 | MsG0380012249.01 | 0.808848 | 2.532052e-50 | 1.463337e-47 |
| MsG0380012249.01 | MsG0380012319.01 | 0.837017 | 6.661992e-57 | 8.543391e-54 |
| MsG0380012249.01 | MsG0380012331.01 | 0.807683 | 4.483677e-50 | 2.513262e-47 |
| MsG0380012249.01 | MsG0380014333.01 | 0.824591 | 7.428811e-54 | 6.609972e-51 |
| MsG0380012249.01 | MsG0380014866.01 | 0.819555 | 1.092457e-52 | 8.434192e-50 |
| MsG0380012249.01 | MsG0380015735.01 | 0.845056 | 5.151610e-59 | 8.480965e-56 |
| MsG0380012249.01 | MsG0380016566.01 | 0.807450 | 5.023917e-50 | 2.799249e-47 |
| MsG0380012249.01 | MsG0380017220.01 | 0.828630 | 8.081566e-55 | 8.077663e-52 |
| MsG0380012249.01 | MsG0480021021.01 | 0.801372 | 9.290051e-49 | 4.429228e-46 |
| MsG0380012249.01 | MsG0480021763.01 | 0.817020 | 4.094958e-52 | 2.948347e-49 |
| MsG0380012249.01 | MsG0480021948.01 | 0.803505 | 3.376954e-49 | 1.699963e-46 |
| MsG0380012249.01 | MsG0480022066.01 | 0.864353 | 1.292544e-64 | 4.046151e-61 |
| MsG0380012249.01 | MsG0480022572.01 | 0.810037 | 1.406733e-50 | 8.391288e-48 |
| MsG0380012249.01 | MsG0480022575.01 | 0.809148 | 2.183662e-50 | 1.272229e-47 |
| MsG0380012249.01 | MsG0480023251.01 | 0.813157 | 2.950276e-51 | 1.911845e-48 |
| MsG0380012249.01 | MsG0480023491.01 | 0.822827 | 1.923068e-53 | 1.627641e-50 |
| MsG0380012249.01 | MsG0480023670.01 | 0.822925 | 1.824356e-53 | 1.548300e-50 |
| MsG0380012249.01 | MsG0480023937.01 | 0.826371 | 2.814765e-54 | 2.634824e-51 |
| MsG0380012249.01 | MsG0580024975.01 | 0.864241 | 1.400693e-64 | 4.367825e-61 |
| MsG0380012249.01 | MsG0580025832.01 | 0.808281 | 3.345628e-50 | 1.905156e-47 |
| MsG0380012249.01 | MsG0580027923.01 | 0.821642 | 3.622214e-53 | 2.963738e-50 |
| MsG0380012249.01 | MsG0580029195.01 | 0.812968 | 3.245881e-51 | 2.092724e-48 |
| MsG0380012249.01 | MsG0580029880.01 | 0.802704 | 4.944009e-49 | 2.438345e-46 |
| MsG0380012249.01 | MsG0680030558.01 | 0.855570 | 5.773545e-62 | 1.338759e-58 |
| MsG0380012249.01 | MsG0680030694.01 | 0.809679 | 1.679449e-50 | 9.924246e-48 |
| MsG0380012249.01 | MsG0680030994.01 | 0.826717 | 2.327105e-54 | 2.199757e-51 |
| MsG0380012249.01 | MsG0680030995.01 | 0.841677 | 4.110339e-58 | 6.084227e-55 |
| MsG0380012249.01 | MsG0680032460.01 | -0.800377 | 1.482799e-48 | 6.893897e-46 |
| MsG0380012249.01 | MsG0680033465.01 | 0.836155 | 1.104076e-56 | 1.379662e-53 |
| MsG0380012249.01 | MsG0680034032.01 | 0.810401 | 1.174307e-50 | 7.071233e-48 |
| MsG0380012249.01 | MsG0680035005.01 | 0.801216 | 9.999249e-49 | 4.748594e-46 |
| MsG0380012249.01 | MsG0680035445.01 | 0.809641 | 1.711347e-50 | 1.010296e-47 |
| MsG0380012249.01 | MsG0680035707.01 | 0.805139 | 1.541696e-49 | 8.094229e-47 |
| MsG0380012249.01 | MsG0680035716.01 | 0.823489 | 1.347706e-53 | 1.162119e-50 |
| MsG0380012249.01 | MsG0780036116.01 | 0.824922 | 6.208045e-54 | 5.576432e-51 |
| MsG0380012249.01 | MsG0780038825.01 | 0.815466 | 9.113148e-52 | 6.288291e-49 |
| MsG0380012249.01 | MsG0780039573.01 | 0.803459 | 3.451939e-49 | 1.735608e-46 |
| MsG0380012249.01 | MsG0780040518.01 | 0.833169 | 6.224283e-56 | 7.110861e-53 |
| MsG0380012249.01 | MsG0780041738.01 | 0.818133 | 2.297671e-52 | 1.705487e-49 |
| MsG0380012249.01 | MsG0780041753.01 | 0.819557 | 1.091012e-52 | 8.423688e-50 |
| MsG0380012249.01 | MsG0880042161.01 | 0.802471 | 5.522436e-49 | 2.707448e-46 |
| MsG0380012249.01 | MsG0880042560.01 | 0.812820 | 3.497427e-51 | 2.246017e-48 |
| MsG0380012249.01 | MsG0880043167.01 | 0.812348 | 4.436095e-51 | 2.813818e-48 |
| MsG0380012249.01 | MsG0880044705.01 | 0.843300 | 1.525365e-58 | 2.376389e-55 |
| MsG0380012249.01 | MsG0880045370.01 | 0.835472 | 1.645299e-56 | 2.013909e-53 |
| MsG0380012249.01 | MsG0880045386.01 | 0.812603 | 3.901792e-51 | 2.491596e-48 |
| MsG0380012249.01 | MsG0880045706.01 | 0.845230 | 4.623486e-59 | 7.653469e-56 |
| MsG0380012249.01 | MsG0880045926.01 | 0.814011 | 1.914312e-51 | 1.269704e-48 |
| MsG0380012249.01 | MsG0880046023.01 | 0.840365 | 9.084663e-58 | 1.291157e-54 |
| MsG0380012249.01 | MsG0880047368.01 | 0.805590 | 1.240630e-49 | 6.589193e-47 |
| MsG0280007407.01 | MsG0380012249.01 | 0.802723 | 4.899823e-49 | 2.417781e-46 |
| MsG0280007537.01 | MsG0380012249.01 | 0.805832 | 1.103398e-49 | 5.897145e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012249.01.T01 | MTR_3g019360 | 96.856 | 827 | 26 | 0 | 6 | 832 | 1 | 827 | 0.0 | 1608 |
| MsG0380012249.01.T01 | MTR_8g027140 | 34.187 | 664 | 421 | 7 | 183 | 832 | 345 | 1006 | 2.37e-102 | 340 |
| MsG0380012249.01.T01 | MTR_7g117890 | 32.492 | 634 | 413 | 6 | 212 | 832 | 370 | 1001 | 4.04e-90 | 306 |
| MsG0380012249.01.T01 | MTR_3g115670 | 27.549 | 657 | 420 | 18 | 221 | 832 | 165 | 810 | 1.72e-47 | 182 |
| MsG0380012249.01.T01 | MTR_1g076400 | 27.751 | 627 | 400 | 18 | 230 | 823 | 392 | 998 | 1.04e-46 | 181 |
| MsG0380012249.01.T01 | MTR_3g466220 | 32.258 | 155 | 101 | 1 | 296 | 450 | 572 | 722 | 5.07e-12 | 70.1 |
| MsG0380012249.01.T01 | MTR_3g466220 | 32.258 | 155 | 101 | 1 | 296 | 450 | 593 | 743 | 5.09e-12 | 70.1 |
| MsG0380012249.01.T01 | MTR_7g097020 | 28.495 | 186 | 130 | 2 | 245 | 428 | 470 | 654 | 2.12e-11 | 68.2 |
| MsG0380012249.01.T01 | MTR_1g104870 | 28.796 | 191 | 122 | 6 | 237 | 419 | 220 | 404 | 3.96e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380012249.01.T01 | AT1G20780 | 27.697 | 686 | 459 | 18 | 183 | 832 | 113 | 797 | 1.44e-44 | 173 |
| MsG0380012249.01.T01 | AT1G20780 | 27.697 | 686 | 459 | 18 | 183 | 832 | 113 | 797 | 1.44e-44 | 173 |
| MsG0380012249.01.T01 | AT1G20780 | 27.697 | 686 | 459 | 18 | 183 | 832 | 113 | 797 | 1.44e-44 | 173 |
| MsG0380012249.01.T01 | AT1G76390 | 28.484 | 653 | 417 | 18 | 223 | 832 | 162 | 807 | 3.72e-44 | 172 |
| MsG0380012249.01.T01 | AT1G76390 | 28.484 | 653 | 417 | 18 | 223 | 832 | 162 | 807 | 3.72e-44 | 172 |
| MsG0380012249.01.T01 | AT1G68940 | 24.860 | 712 | 460 | 22 | 183 | 832 | 387 | 1085 | 1.39e-36 | 149 |
| MsG0380012249.01.T01 | AT1G68940 | 25.841 | 654 | 424 | 20 | 183 | 783 | 387 | 1032 | 3.82e-36 | 148 |
| MsG0380012249.01.T01 | AT1G68940 | 25.841 | 654 | 424 | 20 | 183 | 783 | 334 | 979 | 5.16e-36 | 147 |
| MsG0380012249.01.T01 | AT2G23140 | 32.903 | 155 | 100 | 1 | 296 | 450 | 583 | 733 | 5.08e-12 | 70.5 |
| MsG0380012249.01.T01 | AT2G23140 | 32.903 | 155 | 100 | 1 | 296 | 450 | 583 | 733 | 5.08e-12 | 70.5 |
| MsG0380012249.01.T01 | AT2G23140 | 32.903 | 155 | 100 | 1 | 296 | 450 | 586 | 736 | 5.17e-12 | 70.1 |
| MsG0380012249.01.T01 | AT3G01400 | 28.333 | 240 | 132 | 6 | 222 | 446 | 52 | 266 | 6.86e-12 | 68.6 |
| MsG0380012249.01.T01 | AT2G23140 | 32.903 | 155 | 100 | 1 | 296 | 450 | 394 | 544 | 9.06e-12 | 69.3 |
| MsG0380012249.01.T01 | AT2G23140 | 32.903 | 155 | 100 | 1 | 296 | 450 | 394 | 544 | 9.06e-12 | 69.3 |
| MsG0380012249.01.T01 | AT3G46510 | 29.048 | 210 | 145 | 3 | 267 | 474 | 365 | 572 | 4.23e-11 | 67.0 |
Find 151 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCTTGCAAGATGAAATT+TGG | 0.045920 | 3:+13311094 | MsG0380012249.01.T01:CDS |
| ATGTCCTCAATTTGCTTAAT+AGG | 0.114490 | 3:-13308211 | None:intergenic |
| TTATAATAATACTTGCTATT+TGG | 0.164957 | 3:+13311722 | MsG0380012249.01.T01:three_prime_UTR |
| ACACGATGCAGCAAAGTTAT+TGG | 0.195639 | 3:+13309225 | MsG0380012249.01.T01:CDS |
| AATAGATGACCTTGAATTAT+AGG | 0.201280 | 3:-13310304 | None:intergenic |
| ACTTCTTAGCAATTGAATTA+TGG | 0.217153 | 3:-13308626 | None:intergenic |
| AATTTCATTGCGAAATTATC+AGG | 0.234488 | 3:+13311129 | MsG0380012249.01.T01:CDS |
| AGCAAGTATTATTATAAATA+TGG | 0.237226 | 3:-13311716 | None:intergenic |
| CAAGATGAAATTTGGGAAAA+TGG | 0.257233 | 3:+13311102 | MsG0380012249.01.T01:CDS |
| TCCTCGACTTATCGAAATAT+TGG | 0.262451 | 3:+13311023 | MsG0380012249.01.T01:CDS |
| TTGCTAAGAAGTATTGCTTT+TGG | 0.266379 | 3:+13308637 | MsG0380012249.01.T01:CDS |
| CATTCATTTATGTGCATGTT+TGG | 0.270562 | 3:+13311440 | MsG0380012249.01.T01:three_prime_UTR |
| CTCTATGAGAATGAATATTA+TGG | 0.277262 | 3:+13311395 | MsG0380012249.01.T01:three_prime_UTR |
| TAGCTTCAAAGTTTCTTTGC+AGG | 0.278636 | 3:+13307324 | MsG0380012249.01.T01:five_prime_UTR |
| ACAGTGAACAATCATAATTT+TGG | 0.282088 | 3:+13311487 | MsG0380012249.01.T01:three_prime_UTR |
| TTCAAAGTTCAACTATGTTT+TGG | 0.289210 | 3:+13307269 | MsG0380012249.01.T01:five_prime_UTR |
| TCAAGTGGTTCTTATTGATT+TGG | 0.300541 | 3:+13311272 | MsG0380012249.01.T01:CDS |
| GTTAATGAGAAGCGGAAAAT+TGG | 0.300762 | 3:+13308522 | MsG0380012249.01.T01:CDS |
| ATGTTGGTCGCCATCCTTAA+TGG | 0.301449 | 3:+13309184 | MsG0380012249.01.T01:CDS |
| GCTGCATCGTGTGAAGCAAC+TGG | 0.315559 | 3:-13309214 | None:intergenic |
| TCGATTAAGCTGTTTATTGA+TGG | 0.317674 | 3:-13310703 | None:intergenic |
| ATAGATGACCTTGAATTATA+GGG | 0.320252 | 3:-13310303 | None:intergenic |
| GATGTTGGAGAAAATATTTA+AGG | 0.323077 | 3:+13311215 | MsG0380012249.01.T01:CDS |
| AAGACTTCAAAGTCAATAAC+AGG | 0.335641 | 3:+13307180 | MsG0380012249.01.T01:five_prime_UTR |
| GAAGAACATAGAGTGAAATA+TGG | 0.348558 | 3:+13311240 | MsG0380012249.01.T01:CDS |
| TCTCTTGCAAGATGAAATTT+GGG | 0.351691 | 3:+13311095 | MsG0380012249.01.T01:CDS |
| CAACTGGGTCATCGCCATTA+AGG | 0.355793 | 3:-13309198 | None:intergenic |
| TGGCTGAGGCTGGTTACTTT+AGG | 0.356935 | 3:+13309284 | MsG0380012249.01.T01:CDS |
| TGGTGATTTACTAGCATTGC+TGG | 0.357671 | 3:-13310683 | None:intergenic |
| TTGATTCGATCAGGAATTAC+AGG | 0.367426 | 3:+13310127 | MsG0380012249.01.T01:CDS |
| TGTCCTCAATTTGCTTAATA+GGG | 0.368485 | 3:-13308210 | None:intergenic |
| ATGACTTTCATCGAGATATT+CGG | 0.376342 | 3:-13310503 | None:intergenic |
| CTTGTGAAAATGTTTATTAC+CGG | 0.377303 | 3:+13310031 | MsG0380012249.01.T01:CDS |
| TAACTTGGATTCAAGTTTCC+CGG | 0.378714 | 3:-13310050 | None:intergenic |
| GTTTGGATTGACGGTTAGTT+TGG | 0.389654 | 3:+13311457 | MsG0380012249.01.T01:three_prime_UTR |
| TCACTCAATTCATTCAAGAT+TGG | 0.396017 | 3:-13308082 | None:intergenic |
| GAAAATCAATAGACACTTCA+AGG | 0.397793 | 3:-13308279 | None:intergenic |
| ATTAGCCCTCTTGAGTATAT+CGG | 0.398687 | 3:-13310629 | None:intergenic |
| GCTGTCAACGCTGAAAGTTT+TGG | 0.399752 | 3:+13307973 | MsG0380012249.01.T01:CDS |
| CAAGAAACTACAACTTGTTT+CGG | 0.404230 | 3:+13310768 | MsG0380012249.01.T01:CDS |
| TCATGGCGACAGCACTTTCT+CGG | 0.407754 | 3:+13309951 | MsG0380012249.01.T01:CDS |
| CTTTCAAGCCCTATAATTCA+AGG | 0.411340 | 3:+13310295 | MsG0380012249.01.T01:CDS |
| TAATCAAAATGCACTTCATA+TGG | 0.415025 | 3:+13309264 | MsG0380012249.01.T01:CDS |
| TATGTAATAATTTATTAGAA+AGG | 0.417184 | 3:+13311666 | MsG0380012249.01.T01:three_prime_UTR |
| CAAGCGTTTAGTTTCATGTA+AGG | 0.418914 | 3:+13308588 | MsG0380012249.01.T01:CDS |
| TGCAAAAGTATTAGCAGAGT+TGG | 0.421087 | 3:+13311329 | MsG0380012249.01.T01:CDS |
| CCGATCCGCCTTCGAACTGC+TGG | 0.426866 | 3:-13309139 | None:intergenic |
| TATGTGCATGTTTGGATTGA+CGG | 0.431821 | 3:+13311448 | MsG0380012249.01.T01:three_prime_UTR |
| CATGATATCGGCCGGTCGTT+GGG | 0.435693 | 3:+13308238 | MsG0380012249.01.T01:CDS |
| AAGGTTGTAAAGAAAATATC+AGG | 0.444128 | 3:+13311689 | MsG0380012249.01.T01:three_prime_UTR |
| TCACAATATGCGTTTGTTGA+AGG | 0.445307 | 3:-13310940 | None:intergenic |
| GTGCAACGTTTGATTCGATC+AGG | 0.445518 | 3:+13310118 | MsG0380012249.01.T01:CDS |
| TAAGAAGAGTATAGAAAGAA+AGG | 0.447367 | 3:-13307101 | None:intergenic |
| AATAGCATGTCTTCTCATCT+TGG | 0.449387 | 3:+13310337 | MsG0380012249.01.T01:CDS |
| AATTATTACATACACTAGAA+TGG | 0.449720 | 3:-13311655 | None:intergenic |
| AGGAAAATAACATCAAAATC+AGG | 0.456937 | 3:+13310425 | MsG0380012249.01.T01:CDS |
| TAATAATTTATTAGAAAGGA+AGG | 0.458514 | 3:+13311670 | MsG0380012249.01.T01:three_prime_UTR |
| TAACATCAAAATCAGGTGTA+AGG | 0.461132 | 3:+13310432 | MsG0380012249.01.T01:CDS |
| AACATCTTCGTTGACGAGAA+TGG | 0.469925 | 3:-13310245 | None:intergenic |
| CTCAATTCATTCAAGATTGG+TGG | 0.479413 | 3:-13308079 | None:intergenic |
| AAGCACAAGGGTGAAACATA+TGG | 0.481857 | 3:-13307156 | None:intergenic |
| GTTCACCAATCACAAAATCA+AGG | 0.482327 | 3:+13310836 | MsG0380012249.01.T01:CDS |
| GAGGACATGACACATGATAT+CGG | 0.482853 | 3:+13308226 | MsG0380012249.01.T01:CDS |
| AGGCGGATCGGAAGAATTCA+AGG | 0.486451 | 3:+13309151 | MsG0380012249.01.T01:CDS |
| AGTTTCACTTATGAGACTAA+AGG | 0.494296 | 3:+13308498 | MsG0380012249.01.T01:CDS |
| ATGATGAATGCAAGATTTGA+CGG | 0.497379 | 3:+13308331 | MsG0380012249.01.T01:CDS |
| ATATTCATTCTCATAGAGAA+AGG | 0.497816 | 3:-13311390 | None:intergenic |
| TAAGGAAAACATGGAAAAGA+GGG | 0.499342 | 3:+13307937 | MsG0380012249.01.T01:CDS |
| AAACTTACCCTTGGAGAAGA+TGG | 0.501344 | 3:+13309995 | MsG0380012249.01.T01:CDS |
| TGCTAAGAAATCTGAAATTG+AGG | 0.502480 | 3:+13308015 | MsG0380012249.01.T01:CDS |
| CAAGCAAAACTCCCAACGAC+CGG | 0.505505 | 3:-13308249 | None:intergenic |
| ATGAGTGAAACGAGGACGGT+TGG | 0.508455 | 3:+13308394 | MsG0380012249.01.T01:CDS |
| TGGTACAATGCAGGAGAAGA+TGG | 0.508804 | 3:+13309018 | MsG0380012249.01.T01:intron |
| GGCGACAGCACTTTCTCGGT+TGG | 0.508997 | 3:+13309955 | MsG0380012249.01.T01:CDS |
| GAGTGATAACAGTGTTGTAT+TGG | 0.510112 | 3:+13308099 | MsG0380012249.01.T01:CDS |
| CAGTGGTGAAGTCTCTTACA+AGG | 0.510345 | 3:+13309062 | MsG0380012249.01.T01:CDS |
| AGTGAAAAGGCGGCTGCGGT+TGG | 0.510804 | 3:+13310568 | MsG0380012249.01.T01:CDS |
| CATCTGTGCTCATGACACTA+AGG | 0.512161 | 3:+13310179 | MsG0380012249.01.T01:CDS |
| AACTTGTTTCGGTACAACAC+GGG | 0.514535 | 3:+13310779 | MsG0380012249.01.T01:CDS |
| ACAAAATAGATATCAAAAGC+TGG | 0.514590 | 3:-13310657 | None:intergenic |
| TGCATTTAGAGATGATAACT+TGG | 0.517188 | 3:-13310065 | None:intergenic |
| ACATGATATCGGCCGGTCGT+TGG | 0.517377 | 3:+13308237 | MsG0380012249.01.T01:CDS |
| AGCTTAATCGAGAATGCTAC+CGG | 0.519569 | 3:+13310715 | MsG0380012249.01.T01:CDS |
| AGAAGAGAGGAGGGAAGCAG+TGG | 0.522991 | 3:+13309090 | MsG0380012249.01.T01:CDS |
| TTGTGAAAATGTTTATTACC+GGG | 0.523012 | 3:+13310032 | MsG0380012249.01.T01:CDS |
| ATAAGGAAAACATGGAAAAG+AGG | 0.523467 | 3:+13307936 | MsG0380012249.01.T01:CDS |
| CAACATGGAAAACTCAGAAA+AGG | 0.525821 | 3:-13308044 | None:intergenic |
| GCCCTCAATTCGAAAATCGT+TGG | 0.525824 | 3:+13308126 | MsG0380012249.01.T01:CDS |
| TCAAGGGTGTATCGTTATGT+TGG | 0.525872 | 3:+13309168 | MsG0380012249.01.T01:CDS |
| GCCACTAGTTCAGTATTTGA+AGG | 0.526366 | 3:+13309306 | MsG0380012249.01.T01:CDS |
| GCACTTCATATGGCTGAGGC+TGG | 0.530551 | 3:+13309274 | MsG0380012249.01.T01:CDS |
| CAACTTGTTTCGGTACAACA+CGG | 0.531106 | 3:+13310778 | MsG0380012249.01.T01:CDS |
| GAGATATTCGGTCAACTCAT+CGG | 0.533471 | 3:-13310491 | None:intergenic |
| AACTAAACGCTTGAAAAGAA+AGG | 0.535278 | 3:-13308578 | None:intergenic |
| AGAGAGTGAAAAGGCGGCTG+CGG | 0.546328 | 3:+13310564 | MsG0380012249.01.T01:CDS |
| CTAGTTCAGTATTTGAAGGA+AGG | 0.546371 | 3:+13309310 | MsG0380012249.01.T01:CDS |
| AATATTGGAAGATAAAGAGA+AGG | 0.547474 | 3:+13311038 | MsG0380012249.01.T01:CDS |
| CTTTGAAGTCTTGAAGCACA+AGG | 0.554168 | 3:-13307169 | None:intergenic |
| GATCACAGCAAACTTACCCT+TGG | 0.558315 | 3:+13309986 | MsG0380012249.01.T01:CDS |
| CGTGCAAGAATAGCTGATGC+AGG | 0.560177 | 3:-13310205 | None:intergenic |
| CAATCGCTCCATCTTCTCCA+AGG | 0.563940 | 3:-13310003 | None:intergenic |
| TCCAATATTTCGATAAGTCG+AGG | 0.565498 | 3:-13311024 | None:intergenic |
| GCATATTGTGAAGTTCATGA+TGG | 0.569594 | 3:+13310952 | MsG0380012249.01.T01:CDS |
| ATATGGAGAATCTGCTCAAG+TGG | 0.571666 | 3:+13311257 | MsG0380012249.01.T01:CDS |
| AGTGGTGAAGTCTCTTACAA+GGG | 0.571725 | 3:+13309063 | MsG0380012249.01.T01:CDS |
| GAAGAGAGGAGGGAAGCAGT+GGG | 0.572202 | 3:+13309091 | MsG0380012249.01.T01:CDS |
| CTAACGTTCCAGCAGTTCGA+AGG | 0.573214 | 3:+13309131 | MsG0380012249.01.T01:CDS |
| TCTAGAAGTTGGTGATGCAA+AGG | 0.574108 | 3:+13311173 | MsG0380012249.01.T01:CDS |
| ATCCACATCAGAGAGTGAAA+AGG | 0.578700 | 3:+13310555 | MsG0380012249.01.T01:CDS |
| TGGTAATTTCTCAACCAACA+TGG | 0.579200 | 3:-13308059 | None:intergenic |
| TTTCATGAATAAGGAAAACA+TGG | 0.580130 | 3:+13307928 | MsG0380012249.01.T01:exon |
| TGTGAAGCGGTTTATAACAC+CGG | 0.581105 | 3:-13310734 | None:intergenic |
| AAGGGACTCAGAAGAGAGGA+GGG | 0.581211 | 3:+13309081 | MsG0380012249.01.T01:CDS |
| TCTTGCACGAATTGCTCAGT+CGG | 0.585121 | 3:+13310219 | MsG0380012249.01.T01:CDS |
| TCCTTCAAATACTGAACTAG+TGG | 0.585593 | 3:-13309307 | None:intergenic |
| AAATGCACTTCATATGGCTG+AGG | 0.585763 | 3:+13309270 | MsG0380012249.01.T01:CDS |
| CCAGCAGTTCGAAGGCGGAT+CGG | 0.587143 | 3:+13309139 | MsG0380012249.01.T01:CDS |
| ATCTGTGCTCATGACACTAA+GGG | 0.589179 | 3:+13310180 | MsG0380012249.01.T01:CDS |
| ACACCCTATTAAGCAAATTG+AGG | 0.590072 | 3:+13308207 | MsG0380012249.01.T01:CDS |
| GAGTATAGAAAGAAAGGACA+AGG | 0.592207 | 3:-13307095 | None:intergenic |
| TGGGTCATCGCCATTAAGGA+TGG | 0.593449 | 3:-13309194 | None:intergenic |
| ACGTTCCAGCAGTTCGAAGG+CGG | 0.594463 | 3:+13309134 | MsG0380012249.01.T01:CDS |
| CTAAAGGAGTTAATGAGAAG+CGG | 0.597717 | 3:+13308514 | MsG0380012249.01.T01:CDS |
| AACAGGATTCAAGAAGAAAG+TGG | 0.597758 | 3:+13307197 | MsG0380012249.01.T01:five_prime_UTR |
| TGTCAGATGAATTTGTGAAG+CGG | 0.602127 | 3:-13310747 | None:intergenic |
| CAAGGGACTCAGAAGAGAGG+AGG | 0.603041 | 3:+13309080 | MsG0380012249.01.T01:CDS |
| AATGCAGGAGAAGATGGTTG+AGG | 0.605540 | 3:+13309024 | MsG0380012249.01.T01:intron |
| AAAACAAGATAAATTACAAG+AGG | 0.608659 | 3:-13311615 | None:intergenic |
| CTGCATCGTGTGAAGCAACT+GGG | 0.609262 | 3:-13309213 | None:intergenic |
| TTCACCAATCACAAAATCAA+GGG | 0.611717 | 3:+13310837 | MsG0380012249.01.T01:CDS |
| TTTCATGAGTGAAACGAGGA+CGG | 0.612135 | 3:+13308390 | MsG0380012249.01.T01:CDS |
| ACTTGTTTCGGTACAACACG+GGG | 0.617581 | 3:+13310780 | MsG0380012249.01.T01:CDS |
| AGTAACCGATATACTCAAGA+GGG | 0.620233 | 3:+13310624 | MsG0380012249.01.T01:CDS |
| ACATGAGTTTGATGAAATCA+CGG | 0.621898 | 3:-13311551 | None:intergenic |
| GAACTGCTGGAACGTTAGAG+AGG | 0.622766 | 3:-13309126 | None:intergenic |
| AAGTAACCGATATACTCAAG+AGG | 0.628729 | 3:+13310623 | MsG0380012249.01.T01:CDS |
| GACGGTTGGAGAAATAGAAG+AGG | 0.634976 | 3:+13308408 | MsG0380012249.01.T01:CDS |
| AATCGCTCCATCTTCTCCAA+GGG | 0.635105 | 3:-13310002 | None:intergenic |
| ACATGACACATGATATCGGC+CGG | 0.638680 | 3:+13308230 | MsG0380012249.01.T01:CDS |
| TGACATGAACAAGATCCTCA+TGG | 0.638961 | 3:+13309934 | MsG0380012249.01.T01:CDS |
| CACATCAGAGAGTGAAAAGG+CGG | 0.639535 | 3:+13310558 | MsG0380012249.01.T01:CDS |
| AAACAAGATAAATTACAAGA+GGG | 0.643366 | 3:-13311614 | None:intergenic |
| TTTGAAGTCTTGAAGCACAA+GGG | 0.657932 | 3:-13307168 | None:intergenic |
| GGCGGATCGGAAGAATTCAA+GGG | 0.667758 | 3:+13309152 | MsG0380012249.01.T01:CDS |
| ATGAGAAGCGGAAAATTGGA+CGG | 0.671694 | 3:+13308526 | MsG0380012249.01.T01:CDS |
| TTACAAGGGACTCAGAAGAG+AGG | 0.681688 | 3:+13309077 | MsG0380012249.01.T01:CDS |
| GATTCAAGAAGAAAGTGGTG+TGG | 0.684533 | 3:+13307202 | MsG0380012249.01.T01:five_prime_UTR |
| GAGAAAGTGCTGTCGCCATG+AGG | 0.686769 | 3:-13309949 | None:intergenic |
| TTGTTTAGTCAAAGCAGGTG+CGG | 0.699281 | 3:+13310999 | MsG0380012249.01.T01:CDS |
| GGACGGTGGTTTGATTAACG+AGG | 0.709297 | 3:+13308543 | MsG0380012249.01.T01:CDS |
| AGAAGCGGAAAATTGGACGG+TGG | 0.714460 | 3:+13308529 | MsG0380012249.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGTAATAATTTATTAGAA+AGG | + | Chr3:13311666-13311685 | MsG0380012249.01.T01:three_prime_UTR | 10.0% |
| !!! | AAACATATTTTACTTAATAT+TGG | + | Chr3:13309868-13309887 | MsG0380012249.01.T01:intron | 10.0% |
| !!! | AACATATTTTACTTAATATT+GGG | + | Chr3:13309869-13309888 | MsG0380012249.01.T01:intron | 10.0% |
| !!! | CTGTTATTTATATAATTATA+TGG | + | Chr3:13309374-13309393 | MsG0380012249.01.T01:intron | 10.0% |
| !!! | TAATGTTATAAGATTTTAAT+AGG | + | Chr3:13309542-13309561 | MsG0380012249.01.T01:intron | 10.0% |
| !!! | TATTAAGTAAAATATGTTTT+TGG | - | Chr3:13309867-13309886 | None:intergenic | 10.0% |
| !! | AGCAAGTATTATTATAAATA+TGG | - | Chr3:13311719-13311738 | None:intergenic | 15.0% |
| !! | ATAACATGAAGAAAAAAAAA+TGG | - | Chr3:13309619-13309638 | None:intergenic | 15.0% |
| !! | CTAAATTTGTACAATTAATT+TGG | - | Chr3:13309783-13309802 | None:intergenic | 15.0% |
| !! | TAATAATTTATTAGAAAGGA+AGG | + | Chr3:13311670-13311689 | MsG0380012249.01.T01:three_prime_UTR | 15.0% |
| !!! | CAATTATTTTGTATATGAAT+TGG | + | Chr3:13309814-13309833 | MsG0380012249.01.T01:intron | 15.0% |
| !!! | TTATAATAATACTTGCTATT+TGG | + | Chr3:13311722-13311741 | MsG0380012249.01.T01:three_prime_UTR | 15.0% |
| !! | AAAACAAGATAAATTACAAG+AGG | - | Chr3:13311618-13311637 | None:intergenic | 20.0% |
| !! | AAACAAGATAAATTACAAGA+GGG | - | Chr3:13311617-13311636 | None:intergenic | 20.0% |
| !! | AATTATTACATACACTAGAA+TGG | - | Chr3:13311658-13311677 | None:intergenic | 20.0% |
| !! | AGAAGAAAAATGAAAGAAAA+AGG | + | Chr3:13310373-13310392 | MsG0380012249.01.T01:CDS | 20.0% |
| !! | ATATAATTATATGGACCATA+AGG | + | Chr3:13309383-13309402 | MsG0380012249.01.T01:intron | 20.0% |
| !! | ATTATAAAAAGTCTAGAAGT+TGG | + | Chr3:13311162-13311181 | MsG0380012249.01.T01:CDS | 20.0% |
| !! | CTTTATCTTACTTTATAAAG+TGG | + | Chr3:13308998-13309017 | MsG0380012249.01.T01:intron | 20.0% |
| !! | TATAATAGTAATAAACTGAG+AGG | + | Chr3:13309756-13309775 | MsG0380012249.01.T01:intron | 20.0% |
| !! | TTAGAAAATGTAAAAAGTCA+AGG | + | Chr3:13310902-13310921 | MsG0380012249.01.T01:CDS | 20.0% |
| !! | TTTATAGAAATTTGACCTTA+TGG | - | Chr3:13309401-13309420 | None:intergenic | 20.0% |
| !!! | AAATGAAGTTTTCATGAATA+AGG | + | Chr3:13307919-13307938 | MsG0380012249.01.T01:intron | 20.0% |
| !!! | ATGTTATTTTCCTTAAGAAA+AGG | - | Chr3:13310418-13310437 | None:intergenic | 20.0% |
| !!! | CAATGAATAATTTTGTAGAT+AGG | - | Chr3:13309504-13309523 | None:intergenic | 20.0% |
| !!! | TAAGCTATTTCTATAACAAA+AGG | + | Chr3:13308801-13308820 | MsG0380012249.01.T01:intron | 20.0% |
| ! | AAGGTTGTAAAGAAAATATC+AGG | + | Chr3:13311689-13311708 | MsG0380012249.01.T01:three_prime_UTR | 25.0% |
| ! | AATAAGCTATAAACAGCTTA+TGG | + | Chr3:13308880-13308899 | MsG0380012249.01.T01:intron | 25.0% |
| ! | AATAGATGACCTTGAATTAT+AGG | - | Chr3:13310307-13310326 | None:intergenic | 25.0% |
| ! | AATATTGGAAGATAAAGAGA+AGG | + | Chr3:13311038-13311057 | MsG0380012249.01.T01:CDS | 25.0% |
| ! | AATCTTATAACATTACCTGT+TGG | - | Chr3:13309537-13309556 | None:intergenic | 25.0% |
| ! | AATTTACCTTGATTGATTGT+TGG | + | Chr3:13307520-13307539 | MsG0380012249.01.T01:intron | 25.0% |
| ! | AATTTCATTGCGAAATTATC+AGG | + | Chr3:13311129-13311148 | MsG0380012249.01.T01:CDS | 25.0% |
| ! | ACAAAATAGATATCAAAAGC+TGG | - | Chr3:13310660-13310679 | None:intergenic | 25.0% |
| ! | ACATGAAGAAAAAAAAATGG+AGG | - | Chr3:13309616-13309635 | None:intergenic | 25.0% |
| ! | ACTATTATACCTCAGATTAA+AGG | - | Chr3:13309745-13309764 | None:intergenic | 25.0% |
| ! | ACTTATTTAAGCTTATCAAC+TGG | - | Chr3:13308965-13308984 | None:intergenic | 25.0% |
| ! | ACTTCTTAGCAATTGAATTA+TGG | - | Chr3:13308629-13308648 | None:intergenic | 25.0% |
| ! | AGAAAATGAGTGTTACATAT+AGG | + | Chr3:13309839-13309858 | MsG0380012249.01.T01:intron | 25.0% |
| ! | AGGAAAATAACATCAAAATC+AGG | + | Chr3:13310425-13310444 | MsG0380012249.01.T01:CDS | 25.0% |
| ! | AGTTAGATGGATATAGAAAT+AGG | + | Chr3:13309426-13309445 | MsG0380012249.01.T01:intron | 25.0% |
| ! | ATAGATGACCTTGAATTATA+GGG | - | Chr3:13310306-13310325 | None:intergenic | 25.0% |
| ! | ATATTCATTCTCATAGAGAA+AGG | - | Chr3:13311393-13311412 | None:intergenic | 25.0% |
| ! | CAAAATACAAGTATCTATTG+AGG | - | Chr3:13309350-13309369 | None:intergenic | 25.0% |
| ! | CATGAAGAAAAAAAAATGGA+GGG | - | Chr3:13309615-13309634 | None:intergenic | 25.0% |
| ! | CTCATGAAAAATTCTGATTT+CGG | - | Chr3:13308379-13308398 | None:intergenic | 25.0% |
| ! | CTCTATGAGAATGAATATTA+TGG | + | Chr3:13311395-13311414 | MsG0380012249.01.T01:three_prime_UTR | 25.0% |
| ! | CTTGTGAAAATGTTTATTAC+CGG | + | Chr3:13310031-13310050 | MsG0380012249.01.T01:CDS | 25.0% |
| ! | GAAAATGAGTGTTACATATA+GGG | + | Chr3:13309840-13309859 | MsG0380012249.01.T01:intron | 25.0% |
| ! | GATGTTGGAGAAAATATTTA+AGG | + | Chr3:13311215-13311234 | MsG0380012249.01.T01:CDS | 25.0% |
| ! | TAATATGTGAATGTTGTGAT+TGG | - | Chr3:13309904-13309923 | None:intergenic | 25.0% |
| ! | TAATCAAAATGCACTTCATA+TGG | + | Chr3:13309264-13309283 | MsG0380012249.01.T01:CDS | 25.0% |
| ! | TCTATAAACTTTCAGTTAGA+TGG | + | Chr3:13309413-13309432 | MsG0380012249.01.T01:intron | 25.0% |
| ! | TTGTGAAAATGTTTATTACC+GGG | + | Chr3:13310032-13310051 | MsG0380012249.01.T01:CDS | 25.0% |
| ! | TTTCATGAATAAGGAAAACA+TGG | + | Chr3:13307928-13307947 | MsG0380012249.01.T01:exon | 25.0% |
| !! | ACAGTGAACAATCATAATTT+TGG | + | Chr3:13311487-13311506 | MsG0380012249.01.T01:three_prime_UTR | 25.0% |
| !! | ATAAATTGTTTTCATAGCTC+AGG | + | Chr3:13308856-13308875 | MsG0380012249.01.T01:intron | 25.0% |
| !! | GGTAATAAACATTTTCACAA+GGG | - | Chr3:13310032-13310051 | None:intergenic | 25.0% |
| !! | GTAAAAATCAACTCATTTTC+AGG | - | Chr3:13308686-13308705 | None:intergenic | 25.0% |
| !! | GTAATAAACATTTTCACAAG+GGG | - | Chr3:13310031-13310050 | None:intergenic | 25.0% |
| !! | TAAGAAGAGTATAGAAAGAA+AGG | - | Chr3:13307104-13307123 | None:intergenic | 25.0% |
| !! | TCTAAAATTCTTGCACATTT+AGG | + | Chr3:13308726-13308745 | MsG0380012249.01.T01:intron | 25.0% |
| !! | TTCAAAGTTCAACTATGTTT+TGG | + | Chr3:13307269-13307288 | MsG0380012249.01.T01:five_prime_UTR | 25.0% |
| !! | TTTTAATAGGCATATACTGT+TGG | + | Chr3:13309555-13309574 | MsG0380012249.01.T01:intron | 25.0% |
| !!! | AAGCATGCACTTTATTTTTT+TGG | + | Chr3:13311580-13311599 | MsG0380012249.01.T01:three_prime_UTR | 25.0% |
| !!! | ATTGATTTTCGAGAAAAGAT+TGG | + | Chr3:13308292-13308311 | MsG0380012249.01.T01:CDS | 25.0% |
| !!! | TACTATGTTTTTGTAGATGT+TGG | + | Chr3:13308703-13308722 | MsG0380012249.01.T01:intron | 25.0% |
| !!! | TTTCATTTTTCTTCTCACTT+TGG | - | Chr3:13310368-13310387 | None:intergenic | 25.0% |
| !!! | TTTTGGAAATGATGAGAAAA+AGG | + | Chr3:13308654-13308673 | MsG0380012249.01.T01:CDS | 25.0% |
| AACATTCACATATTACTGCA+GGG | + | Chr3:13309909-13309928 | MsG0380012249.01.T01:intron | 30.0% | |
| AACTAAACGCTTGAAAAGAA+AGG | - | Chr3:13308581-13308600 | None:intergenic | 30.0% | |
| AAGACTTCAAAGTCAATAAC+AGG | + | Chr3:13307180-13307199 | MsG0380012249.01.T01:five_prime_UTR | 30.0% | |
| AATCCGAGTTCAAATTCTAA+CGG | + | Chr3:13307672-13307691 | MsG0380012249.01.T01:intron | 30.0% | |
| ACATGAGTTTGATGAAATCA+CGG | - | Chr3:13311554-13311573 | None:intergenic | 30.0% | |
| AGTTTCACTTATGAGACTAA+AGG | + | Chr3:13308498-13308517 | MsG0380012249.01.T01:CDS | 30.0% | |
| ATAAGGAAAACATGGAAAAG+AGG | + | Chr3:13307936-13307955 | MsG0380012249.01.T01:CDS | 30.0% | |
| ATGACTTTCATCGAGATATT+CGG | - | Chr3:13310506-13310525 | None:intergenic | 30.0% | |
| ATGATGAATGCAAGATTTGA+CGG | + | Chr3:13308331-13308350 | MsG0380012249.01.T01:CDS | 30.0% | |
| ATTCCGTTAGAATTTGAACT+CGG | - | Chr3:13307678-13307697 | None:intergenic | 30.0% | |
| CAAATAGAGACAAATTCAGA+AGG | - | Chr3:13307363-13307382 | None:intergenic | 30.0% | |
| CAAGATGAAATTTGGGAAAA+TGG | + | Chr3:13311102-13311121 | MsG0380012249.01.T01:CDS | 30.0% | |
| CATTCATTTATGTGCATGTT+TGG | + | Chr3:13311440-13311459 | MsG0380012249.01.T01:three_prime_UTR | 30.0% | |
| GAAAATCAATAGACACTTCA+AGG | - | Chr3:13308282-13308301 | None:intergenic | 30.0% | |
| GAAAATGTAAAAAGTCAAGG+TGG | + | Chr3:13310905-13310924 | MsG0380012249.01.T01:CDS | 30.0% | |
| GAAGAACATAGAGTGAAATA+TGG | + | Chr3:13311240-13311259 | MsG0380012249.01.T01:CDS | 30.0% | |
| TAACATCAAAATCAGGTGTA+AGG | + | Chr3:13310432-13310451 | MsG0380012249.01.T01:CDS | 30.0% | |
| TAAGGAAAACATGGAAAAGA+GGG | + | Chr3:13307937-13307956 | MsG0380012249.01.T01:CDS | 30.0% | |
| TCACTCAATTCATTCAAGAT+TGG | - | Chr3:13308085-13308104 | None:intergenic | 30.0% | |
| TCGATTAAGCTGTTTATTGA+TGG | - | Chr3:13310706-13310725 | None:intergenic | 30.0% | |
| TCTCTTGCAAGATGAAATTT+GGG | + | Chr3:13311095-13311114 | MsG0380012249.01.T01:CDS | 30.0% | |
| TGCATTTAGAGATGATAACT+TGG | - | Chr3:13310068-13310087 | None:intergenic | 30.0% | |
| TTCACCAATCACAAAATCAA+GGG | + | Chr3:13310837-13310856 | MsG0380012249.01.T01:CDS | 30.0% | |
| TTTATAAAGTGGTACAATGC+AGG | + | Chr3:13309009-13309028 | MsG0380012249.01.T01:intron | 30.0% | |
| ! | AATTTTTCATGAGTGAAACG+AGG | + | Chr3:13308386-13308405 | MsG0380012249.01.T01:CDS | 30.0% |
| ! | ACTACTCTTACCTTTTCTTA+AGG | + | Chr3:13310405-13310424 | MsG0380012249.01.T01:CDS | 30.0% |
| ! | AGTTTTACACTGACATCAAA+TGG | + | Chr3:13309586-13309605 | MsG0380012249.01.T01:intron | 30.0% |
| ! | ATGTCCTCAATTTGCTTAAT+AGG | - | Chr3:13308214-13308233 | None:intergenic | 30.0% |
| ! | ATTAAGTTGCTTATCCAAAC+AGG | - | Chr3:13308752-13308771 | None:intergenic | 30.0% |
| ! | ATTTTGTGATAGTTGTGCTA+AGG | - | Chr3:13310872-13310891 | None:intergenic | 30.0% |
| ! | CAAGAAACTACAACTTGTTT+CGG | + | Chr3:13310768-13310787 | MsG0380012249.01.T01:CDS | 30.0% |
| ! | CGGTAATAAACATTTTCACA+AGG | - | Chr3:13310033-13310052 | None:intergenic | 30.0% |
| ! | GTGATTTTGCAACTTAAGAA+TGG | + | Chr3:13308457-13308476 | MsG0380012249.01.T01:CDS | 30.0% |
| ! | TCAAGTGGTTCTTATTGATT+TGG | + | Chr3:13311272-13311291 | MsG0380012249.01.T01:CDS | 30.0% |
| ! | TGCTAAGAAATCTGAAATTG+AGG | + | Chr3:13308015-13308034 | MsG0380012249.01.T01:CDS | 30.0% |
| ! | TGTCCTCAATTTGCTTAATA+GGG | - | Chr3:13308213-13308232 | None:intergenic | 30.0% |
| !! | ACATTTTGTTTAGTCAAAGC+AGG | + | Chr3:13310994-13311013 | MsG0380012249.01.T01:CDS | 30.0% |
| !! | AGAAAAAGCATTATGGATGT+TGG | + | Chr3:13311200-13311219 | MsG0380012249.01.T01:CDS | 30.0% |
| !! | AGGTTCAAGAAAAAGCATTA+TGG | + | Chr3:13311193-13311212 | MsG0380012249.01.T01:CDS | 30.0% |
| !!! | AGAATGGTTTTATGTGTTTC+AGG | - | Chr3:13311642-13311661 | None:intergenic | 30.0% |
| !!! | CTAACGGAATAGTTTTTTGT+TGG | + | Chr3:13307688-13307707 | MsG0380012249.01.T01:intron | 30.0% |
| !!! | TTGCTAAGAAGTATTGCTTT+TGG | + | Chr3:13308637-13308656 | MsG0380012249.01.T01:CDS | 30.0% |
| AACAGGATTCAAGAAGAAAG+TGG | + | Chr3:13307197-13307216 | MsG0380012249.01.T01:five_prime_UTR | 35.0% | |
| AACCAACCAACAATCAATCA+AGG | - | Chr3:13307529-13307548 | None:intergenic | 35.0% | |
| AAGTAACCGATATACTCAAG+AGG | + | Chr3:13310623-13310642 | MsG0380012249.01.T01:CDS | 35.0% | |
| AATAGCATGTCTTCTCATCT+TGG | + | Chr3:13310337-13310356 | MsG0380012249.01.T01:CDS | 35.0% | |
| ACACCCTATTAAGCAAATTG+AGG | + | Chr3:13308207-13308226 | MsG0380012249.01.T01:CDS | 35.0% | |
| AGTAACCGATATACTCAAGA+GGG | + | Chr3:13310624-13310643 | MsG0380012249.01.T01:CDS | 35.0% | |
| ATTAGCCCTCTTGAGTATAT+CGG | - | Chr3:13310632-13310651 | None:intergenic | 35.0% | |
| CAACATAGTTCGAAAAGTGA+AGG | + | Chr3:13309652-13309671 | MsG0380012249.01.T01:intron | 35.0% | |
| CAACATGGAAAACTCAGAAA+AGG | - | Chr3:13308047-13308066 | None:intergenic | 35.0% | |
| CAACATTCACATATTACTGC+AGG | + | Chr3:13309908-13309927 | MsG0380012249.01.T01:intron | 35.0% | |
| CATGCATAACCTTTAATCTG+AGG | + | Chr3:13309733-13309752 | MsG0380012249.01.T01:intron | 35.0% | |
| CTAAAGGAGTTAATGAGAAG+CGG | + | Chr3:13308514-13308533 | MsG0380012249.01.T01:CDS | 35.0% | |
| CTAGTTCAGTATTTGAAGGA+AGG | + | Chr3:13309310-13309329 | MsG0380012249.01.T01:CDS | 35.0% | |
| CTCAATTCATTCAAGATTGG+TGG | - | Chr3:13308082-13308101 | None:intergenic | 35.0% | |
| CTCTCTTGCAAGATGAAATT+TGG | + | Chr3:13311094-13311113 | MsG0380012249.01.T01:CDS | 35.0% | |
| CTTTCAAGCCCTATAATTCA+AGG | + | Chr3:13310295-13310314 | MsG0380012249.01.T01:CDS | 35.0% | |
| GAAGCAGAAAAGTTAGCATT+CGG | + | Chr3:13309467-13309486 | MsG0380012249.01.T01:intron | 35.0% | |
| GAGTATAGAAAGAAAGGACA+AGG | - | Chr3:13307098-13307117 | None:intergenic | 35.0% | |
| GAGTGATAACAGTGTTGTAT+TGG | + | Chr3:13308099-13308118 | MsG0380012249.01.T01:CDS | 35.0% | |
| GCATATTGTGAAGTTCATGA+TGG | + | Chr3:13310952-13310971 | MsG0380012249.01.T01:CDS | 35.0% | |
| GTTAATGAGAAGCGGAAAAT+TGG | + | Chr3:13308522-13308541 | MsG0380012249.01.T01:CDS | 35.0% | |
| GTTCACCAATCACAAAATCA+AGG | + | Chr3:13310836-13310855 | MsG0380012249.01.T01:CDS | 35.0% | |
| GTTGGAATTTACTTGCCTTA+TGG | + | Chr3:13307706-13307725 | MsG0380012249.01.T01:intron | 35.0% | |
| TACCTTGATTGATTGTTGGT+TGG | + | Chr3:13307524-13307543 | MsG0380012249.01.T01:intron | 35.0% | |
| TAGCTTCAAAGTTTCTTTGC+AGG | + | Chr3:13307324-13307343 | MsG0380012249.01.T01:five_prime_UTR | 35.0% | |
| TATGTGCATGTTTGGATTGA+CGG | + | Chr3:13311448-13311467 | MsG0380012249.01.T01:three_prime_UTR | 35.0% | |
| TATTTGAAGGAAGGTAATGC+AGG | + | Chr3:13309319-13309338 | MsG0380012249.01.T01:intron | 35.0% | |
| TCCAATATTTCGATAAGTCG+AGG | - | Chr3:13311027-13311046 | None:intergenic | 35.0% | |
| TCCTCGACTTATCGAAATAT+TGG | + | Chr3:13311023-13311042 | MsG0380012249.01.T01:CDS | 35.0% | |
| TCCTTCAAATACTGAACTAG+TGG | - | Chr3:13309310-13309329 | None:intergenic | 35.0% | |
| TGGTAATTTCTCAACCAACA+TGG | - | Chr3:13308062-13308081 | None:intergenic | 35.0% | |
| TGTCAGATGAATTTGTGAAG+CGG | - | Chr3:13310750-13310769 | None:intergenic | 35.0% | |
| TTGTGAGTTGTAACAACGTT+TGG | - | Chr3:13308933-13308952 | None:intergenic | 35.0% | |
| ! | CAAGCGTTTAGTTTCATGTA+AGG | + | Chr3:13308588-13308607 | MsG0380012249.01.T01:CDS | 35.0% |
| ! | CTTTTCTGAGTTTTCCATGT+TGG | + | Chr3:13308045-13308064 | MsG0380012249.01.T01:CDS | 35.0% |
| ! | TAACTTGGATTCAAGTTTCC+CGG | - | Chr3:13310053-13310072 | None:intergenic | 35.0% |
| ! | TCACAATATGCGTTTGTTGA+AGG | - | Chr3:13310943-13310962 | None:intergenic | 35.0% |
| ! | TCCAACGATTTTCGAATTGA+GGG | - | Chr3:13308130-13308149 | None:intergenic | 35.0% |
| ! | TTCCAACGATTTTCGAATTG+AGG | - | Chr3:13308131-13308150 | None:intergenic | 35.0% |
| ! | TTGATTCGATCAGGAATTAC+AGG | + | Chr3:13310127-13310146 | MsG0380012249.01.T01:CDS | 35.0% |
| ! | TTTGAAGTCTTGAAGCACAA+GGG | - | Chr3:13307171-13307190 | None:intergenic | 35.0% |
| !! | TGCAAAAGTATTAGCAGAGT+TGG | + | Chr3:13311329-13311348 | MsG0380012249.01.T01:CDS | 35.0% |
| !!! | GGTTACTTTTTTATCGCTAG+CGG | - | Chr3:13310611-13310630 | None:intergenic | 35.0% |
| !!! | GTTACTTTTTTATCGCTAGC+GGG | - | Chr3:13310610-13310629 | None:intergenic | 35.0% |
| !!! | GTTCAACTATGTTTTGGTCT+TGG | + | Chr3:13307275-13307294 | MsG0380012249.01.T01:five_prime_UTR | 35.0% |
| AAACTTACCCTTGGAGAAGA+TGG | + | Chr3:13309995-13310014 | MsG0380012249.01.T01:CDS | 40.0% | |
| AAATGCACTTCATATGGCTG+AGG | + | Chr3:13309270-13309289 | MsG0380012249.01.T01:CDS | 40.0% | |
| AACATCTTCGTTGACGAGAA+TGG | - | Chr3:13310248-13310267 | None:intergenic | 40.0% | |
| AAGCACAAGGGTGAAACATA+TGG | - | Chr3:13307159-13307178 | None:intergenic | 40.0% | |
| ACACGATGCAGCAAAGTTAT+TGG | + | Chr3:13309225-13309244 | MsG0380012249.01.T01:CDS | 40.0% | |
| AGCTTAATCGAGAATGCTAC+CGG | + | Chr3:13310715-13310734 | MsG0380012249.01.T01:CDS | 40.0% | |
| AGTGGTGAAGTCTCTTACAA+GGG | + | Chr3:13309063-13309082 | MsG0380012249.01.T01:CDS | 40.0% | |
| ATATGGAGAATCTGCTCAAG+TGG | + | Chr3:13311257-13311276 | MsG0380012249.01.T01:CDS | 40.0% | |
| ATCCACATCAGAGAGTGAAA+AGG | + | Chr3:13310555-13310574 | MsG0380012249.01.T01:CDS | 40.0% | |
| ATCTGTGCTCATGACACTAA+GGG | + | Chr3:13310180-13310199 | MsG0380012249.01.T01:CDS | 40.0% | |
| ATGAGAAGCGGAAAATTGGA+CGG | + | Chr3:13308526-13308545 | MsG0380012249.01.T01:CDS | 40.0% | |
| CATTGTGTTATATCGCCAAC+AGG | + | Chr3:13309519-13309538 | MsG0380012249.01.T01:intron | 40.0% | |
| CTCACATGATTAATGAGCTC+TGG | + | Chr3:13307627-13307646 | MsG0380012249.01.T01:intron | 40.0% | |
| GAGATATTCGGTCAACTCAT+CGG | - | Chr3:13310494-13310513 | None:intergenic | 40.0% | |
| GAGGACATGACACATGATAT+CGG | + | Chr3:13308226-13308245 | MsG0380012249.01.T01:CDS | 40.0% | |
| GATTCAAGAAGAAAGTGGTG+TGG | + | Chr3:13307202-13307221 | MsG0380012249.01.T01:five_prime_UTR | 40.0% | |
| GCCACTAGTTCAGTATTTGA+AGG | + | Chr3:13309306-13309325 | MsG0380012249.01.T01:CDS | 40.0% | |
| TCCTTTCTCTACGAACAAGA+GGG | + | Chr3:13307751-13307770 | MsG0380012249.01.T01:intron | 40.0% | |
| TGACATGAACAAGATCCTCA+TGG | + | Chr3:13309934-13309953 | MsG0380012249.01.T01:CDS | 40.0% | |
| TGGTGATTTACTAGCATTGC+TGG | - | Chr3:13310686-13310705 | None:intergenic | 40.0% | |
| TGTGAAGCGGTTTATAACAC+CGG | - | Chr3:13310737-13310756 | None:intergenic | 40.0% | |
| TTCGAAAAGTGAAGGTCATG+TGG | + | Chr3:13309660-13309679 | MsG0380012249.01.T01:intron | 40.0% | |
| TTGTTTAGTCAAAGCAGGTG+CGG | + | Chr3:13310999-13311018 | MsG0380012249.01.T01:CDS | 40.0% | |
| TTTCATGAGTGAAACGAGGA+CGG | + | Chr3:13308390-13308409 | MsG0380012249.01.T01:CDS | 40.0% | |
| ! | AACTTGTTTCGGTACAACAC+GGG | + | Chr3:13310779-13310798 | MsG0380012249.01.T01:CDS | 40.0% |
| ! | CAACTTGTTTCGGTACAACA+CGG | + | Chr3:13310778-13310797 | MsG0380012249.01.T01:CDS | 40.0% |
| ! | GAGAGCAATTTTACGAGCAA+AGG | - | Chr3:13310811-13310830 | None:intergenic | 40.0% |
| ! | GGTTGAGTTTTTATCAGCAG+TGG | + | Chr3:13309045-13309064 | MsG0380012249.01.T01:CDS | 40.0% |
| ! | GTTTGGATTGACGGTTAGTT+TGG | + | Chr3:13311457-13311476 | MsG0380012249.01.T01:three_prime_UTR | 40.0% |
| ! | TCAAGGGTGTATCGTTATGT+TGG | + | Chr3:13309168-13309187 | MsG0380012249.01.T01:CDS | 40.0% |
| !! | CTTTGAAGTCTTGAAGCACA+AGG | - | Chr3:13307172-13307191 | None:intergenic | 40.0% |
| !! | TCTAGAAGTTGGTGATGCAA+AGG | + | Chr3:13311173-13311192 | MsG0380012249.01.T01:CDS | 40.0% |
| AATCGCTCCATCTTCTCCAA+GGG | - | Chr3:13310005-13310024 | None:intergenic | 45.0% | |
| AATGCAGGAGAAGATGGTTG+AGG | + | Chr3:13309024-13309043 | MsG0380012249.01.T01:intron | 45.0% | |
| ACATGACACATGATATCGGC+CGG | + | Chr3:13308230-13308249 | MsG0380012249.01.T01:CDS | 45.0% | |
| ACCCTCTTGTTCGTAGAGAA+AGG | - | Chr3:13307755-13307774 | None:intergenic | 45.0% | |
| ACTTGTTTCGGTACAACACG+GGG | + | Chr3:13310780-13310799 | MsG0380012249.01.T01:CDS | 45.0% | |
| ATGTTGGTCGCCATCCTTAA+TGG | + | Chr3:13309184-13309203 | MsG0380012249.01.T01:CDS | 45.0% | |
| CAAGTCGGAGTATGACCATA+AGG | - | Chr3:13307724-13307743 | None:intergenic | 45.0% | |
| CACATCAGAGAGTGAAAAGG+CGG | + | Chr3:13310558-13310577 | MsG0380012249.01.T01:CDS | 45.0% | |
| CAGTGGTGAAGTCTCTTACA+AGG | + | Chr3:13309062-13309081 | MsG0380012249.01.T01:CDS | 45.0% | |
| CATCTGTGCTCATGACACTA+AGG | + | Chr3:13310179-13310198 | MsG0380012249.01.T01:CDS | 45.0% | |
| CTCCTTTCTCTACGAACAAG+AGG | + | Chr3:13307750-13307769 | MsG0380012249.01.T01:intron | 45.0% | |
| CTCTTGTTCGTAGAGAAAGG+AGG | - | Chr3:13307752-13307771 | None:intergenic | 45.0% | |
| CTTGCACATTTAGGCCTGTT+TGG | + | Chr3:13308735-13308754 | MsG0380012249.01.T01:intron | 45.0% | |
| GAAAAGTGAAGGTCATGTGG+CGG | + | Chr3:13309663-13309682 | MsG0380012249.01.T01:intron | 45.0% | |
| GACGGTTGGAGAAATAGAAG+AGG | + | Chr3:13308408-13308427 | MsG0380012249.01.T01:CDS | 45.0% | |
| GATCACAGCAAACTTACCCT+TGG | + | Chr3:13309986-13310005 | MsG0380012249.01.T01:CDS | 45.0% | |
| GCCCTCAATTCGAAAATCGT+TGG | + | Chr3:13308126-13308145 | MsG0380012249.01.T01:CDS | 45.0% | |
| TCTTGCACGAATTGCTCAGT+CGG | + | Chr3:13310219-13310238 | MsG0380012249.01.T01:CDS | 45.0% | |
| TGGTACAATGCAGGAGAAGA+TGG | + | Chr3:13309018-13309037 | MsG0380012249.01.T01:intron | 45.0% | |
| TTACAAGGGACTCAGAAGAG+AGG | + | Chr3:13309077-13309096 | MsG0380012249.01.T01:CDS | 45.0% | |
| ! | GCAGCCCTTGATTTTGTGAT+TGG | - | Chr3:13310844-13310863 | None:intergenic | 45.0% |
| ! | GCTGTCAACGCTGAAAGTTT+TGG | + | Chr3:13307973-13307992 | MsG0380012249.01.T01:CDS | 45.0% |
| ! | GTGCAACGTTTGATTCGATC+AGG | + | Chr3:13310118-13310137 | MsG0380012249.01.T01:CDS | 45.0% |
| AAGGGACTCAGAAGAGAGGA+GGG | + | Chr3:13309081-13309100 | MsG0380012249.01.T01:CDS | 50.0% | |
| AGAAGCGGAAAATTGGACGG+TGG | + | Chr3:13308529-13308548 | MsG0380012249.01.T01:CDS | 50.0% | |
| AGGCGGATCGGAAGAATTCA+AGG | + | Chr3:13309151-13309170 | MsG0380012249.01.T01:CDS | 50.0% | |
| ATGAGTGAAACGAGGACGGT+TGG | + | Chr3:13308394-13308413 | MsG0380012249.01.T01:CDS | 50.0% | |
| CAACTGGGTCATCGCCATTA+AGG | - | Chr3:13309201-13309220 | None:intergenic | 50.0% | |
| CAAGCAAAACTCCCAACGAC+CGG | - | Chr3:13308252-13308271 | None:intergenic | 50.0% | |
| CAATCGCTCCATCTTCTCCA+AGG | - | Chr3:13310006-13310025 | None:intergenic | 50.0% | |
| CGTGCAAGAATAGCTGATGC+AGG | - | Chr3:13310208-13310227 | None:intergenic | 50.0% | |
| CTAACGTTCCAGCAGTTCGA+AGG | + | Chr3:13309131-13309150 | MsG0380012249.01.T01:CDS | 50.0% | |
| CTGCATCGTGTGAAGCAACT+GGG | - | Chr3:13309216-13309235 | None:intergenic | 50.0% | |
| GAACTGCTGGAACGTTAGAG+AGG | - | Chr3:13309129-13309148 | None:intergenic | 50.0% | |
| GGACGGTGGTTTGATTAACG+AGG | + | Chr3:13308543-13308562 | MsG0380012249.01.T01:CDS | 50.0% | |
| GGCGGATCGGAAGAATTCAA+GGG | + | Chr3:13309152-13309171 | MsG0380012249.01.T01:CDS | 50.0% | |
| TCATGGCGACAGCACTTTCT+CGG | + | Chr3:13309951-13309970 | MsG0380012249.01.T01:CDS | 50.0% | |
| TGGGTCATCGCCATTAAGGA+TGG | - | Chr3:13309197-13309216 | None:intergenic | 50.0% | |
| ! | CGCCTTTTCACTCTCTGATG+TGG | - | Chr3:13310560-13310579 | None:intergenic | 50.0% |
| ! | TGGCTGAGGCTGGTTACTTT+AGG | + | Chr3:13309284-13309303 | MsG0380012249.01.T01:CDS | 50.0% |
| ACATGATATCGGCCGGTCGT+TGG | + | Chr3:13308237-13308256 | MsG0380012249.01.T01:CDS | 55.0% | |
| ACGTTCCAGCAGTTCGAAGG+CGG | + | Chr3:13309134-13309153 | MsG0380012249.01.T01:CDS | 55.0% | |
| AGAAAGGAGGCCTCGCAAGT+CGG | - | Chr3:13307739-13307758 | None:intergenic | 55.0% | |
| AGAAGAGAGGAGGGAAGCAG+TGG | + | Chr3:13309090-13309109 | MsG0380012249.01.T01:CDS | 55.0% | |
| AGAGAGTGAAAAGGCGGCTG+CGG | + | Chr3:13310564-13310583 | MsG0380012249.01.T01:CDS | 55.0% | |
| CAAGGGACTCAGAAGAGAGG+AGG | + | Chr3:13309080-13309099 | MsG0380012249.01.T01:CDS | 55.0% | |
| CATGATATCGGCCGGTCGTT+GGG | + | Chr3:13308238-13308257 | MsG0380012249.01.T01:CDS | 55.0% | |
| GAAGAGAGGAGGGAAGCAGT+GGG | + | Chr3:13309091-13309110 | MsG0380012249.01.T01:CDS | 55.0% | |
| GCACTTCATATGGCTGAGGC+TGG | + | Chr3:13309274-13309293 | MsG0380012249.01.T01:CDS | 55.0% | |
| GCTGCATCGTGTGAAGCAAC+TGG | - | Chr3:13309217-13309236 | None:intergenic | 55.0% | |
| ! | TGGTCATACTCCGACTTGCG+AGG | + | Chr3:13307726-13307745 | MsG0380012249.01.T01:intron | 55.0% |
| !! | GAGAAAGTGCTGTCGCCATG+AGG | - | Chr3:13309952-13309971 | None:intergenic | 55.0% |
| AGTGAAAAGGCGGCTGCGGT+TGG | + | Chr3:13310568-13310587 | MsG0380012249.01.T01:CDS | 60.0% | |
| CCAGCAGTTCGAAGGCGGAT+CGG | + | Chr3:13309139-13309158 | MsG0380012249.01.T01:CDS | 60.0% | |
| GGCGACAGCACTTTCTCGGT+TGG | + | Chr3:13309955-13309974 | MsG0380012249.01.T01:CDS | 60.0% | |
| CCGATCCGCCTTCGAACTGC+TGG | - | Chr3:13309142-13309161 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 13307077 | 13311744 | 13307077 | ID=MsG0380012249.01;Name=MsG0380012249.01 |
| Chr3 | mRNA | 13307077 | 13311744 | 13307077 | ID=MsG0380012249.01.T01;Parent=MsG0380012249.01;Name=MsG0380012249.01.T01;_AED=0.36;_eAED=0.36;_QI=246|1|1|1|0.5|0.4|5|361|832 |
| Chr3 | exon | 13307077 | 13307230 | 13307077 | ID=MsG0380012249.01.T01:exon:21229;Parent=MsG0380012249.01.T01 |
| Chr3 | exon | 13307259 | 13307345 | 13307259 | ID=MsG0380012249.01.T01:exon:21230;Parent=MsG0380012249.01.T01 |
| Chr3 | exon | 13307927 | 13308675 | 13307927 | ID=MsG0380012249.01.T01:exon:21231;Parent=MsG0380012249.01.T01 |
| Chr3 | exon | 13309031 | 13309331 | 13309031 | ID=MsG0380012249.01.T01:exon:21232;Parent=MsG0380012249.01.T01 |
| Chr3 | exon | 13309930 | 13311744 | 13309930 | ID=MsG0380012249.01.T01:exon:21233;Parent=MsG0380012249.01.T01 |
| Chr3 | five_prime_UTR | 13307077 | 13307230 | 13307077 | ID=MsG0380012249.01.T01:five_prime_utr;Parent=MsG0380012249.01.T01 |
| Chr3 | five_prime_UTR | 13307259 | 13307345 | 13307259 | ID=MsG0380012249.01.T01:five_prime_utr;Parent=MsG0380012249.01.T01 |
| Chr3 | five_prime_UTR | 13307927 | 13307931 | 13307927 | ID=MsG0380012249.01.T01:five_prime_utr;Parent=MsG0380012249.01.T01 |
| Chr3 | CDS | 13307932 | 13308675 | 13307932 | ID=MsG0380012249.01.T01:cds;Parent=MsG0380012249.01.T01 |
| Chr3 | CDS | 13309031 | 13309331 | 13309031 | ID=MsG0380012249.01.T01:cds;Parent=MsG0380012249.01.T01 |
| Chr3 | CDS | 13309930 | 13311383 | 13309930 | ID=MsG0380012249.01.T01:cds;Parent=MsG0380012249.01.T01 |
| Chr3 | three_prime_UTR | 13311384 | 13311744 | 13311384 | ID=MsG0380012249.01.T01:three_prime_utr;Parent=MsG0380012249.01.T01 |
| Gene Sequence |
| Protein sequence |
