AlfalfaGEDB | MsG0880045507.01

M. sativa cultivar ZhongmuNo.1 / MsG0880045507.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045507.01.T01	XP_003629083.1	62.274	387	87	6	14	345	15	397	7.46E-116	357
MsG0880045507.01.T01	XP_003629083.1	93.571	140	7	2	209	346	376	515	2.78E-81	268

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045507.01.T01	Q9SVW8	77.778	135	29	1	213	346	361	495	8.70E-65	217

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045507.01.T01	G7L8M5	62.274	387	87	6	14	345	15	397	3.56e-116	357

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048969.01	MsG0880045507.01	0.802808	4.704939e-49	2.326722e-46
MsG0080049016.01	MsG0880045507.01	0.801856	7.390129e-49	3.566917e-46
MsG0180003268.01	MsG0880045507.01	0.812525	4.056927e-51	2.585513e-48
MsG0180005991.01	MsG0880045507.01	0.816010	6.892274e-52	4.827058e-49
MsG0280008233.01	MsG0880045507.01	0.805599	1.235195e-49	6.561727e-47
MsG0280010523.01	MsG0880045507.01	0.831862	1.312297e-55	1.442271e-52
MsG0280010905.01	MsG0880045507.01	0.808267	3.368495e-50	1.917499e-47
MsG0280011169.01	MsG0880045507.01	0.833371	5.541522e-56	6.369306e-53
MsG0280011207.01	MsG0880045507.01	0.833622	4.797184e-56	5.554892e-53
MsG0380014183.01	MsG0880045507.01	0.821688	3.534325e-53	2.895687e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045507.01.T01	MTR_8g072950	62.274	387	87	6	14	345	15	397	9.03e-120	357
MsG0880045507.01.T01	MTR_8g072950	93.571	140	7	2	209	346	376	515	3.37e-85	268
MsG0880045507.01.T01	MTR_5g024780	83.704	135	21	1	213	346	392	526	1.64e-71	233
MsG0880045507.01.T01	MTR_5g024780	35.279	394	180	14	13	345	6	385	9.70e-50	175
MsG0880045507.01.T01	MTR_4g098530	61.184	152	54	2	196	346	298	445	7.71e-56	189
MsG0880045507.01.T01	MTR_4g098530	25.000	356	216	9	6	345	7	327	1.04e-21	96.3
MsG0880045507.01.T01	MTR_3g076990	39.865	148	64	4	223	345	279	426	3.34e-23	100
MsG0880045507.01.T01	MTR_4g105010	37.908	153	89	3	195	345	281	429	3.80e-23	100
MsG0880045507.01.T01	MTR_4g105010	41.000	100	56	2	224	322	214	311	3.21e-11	64.7
MsG0880045507.01.T01	MTR_5g032910	41.791	134	76	2	214	345	243	376	6.20e-23	99.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880045507.01.T01	AT4G35470	77.778	135	29	1	213	346	361	495	8.87e-66	217
MsG0880045507.01.T01	AT4G35470	35.912	362	184	9	13	345	12	354	1.04e-47	169
MsG0880045507.01.T01	AT4G35470	77.778	135	29	1	213	346	361	495	9.44e-66	217
MsG0880045507.01.T01	AT4G35470	35.912	362	184	9	13	345	12	354	8.78e-48	169
MsG0880045507.01.T01	AT2G17440	71.852	135	37	1	213	346	345	479	2.79e-59	199
MsG0880045507.01.T01	AT2G17440	32.782	363	189	9	13	346	3	339	2.48e-41	151
MsG0880045507.01.T01	AT3G11330	42.105	152	82	3	196	345	277	424	7.58e-27	111
MsG0880045507.01.T01	AT5G05850	43.077	130	72	2	218	345	301	430	3.49e-24	103
MsG0880045507.01.T01	AT3G26500	40.288	139	80	3	209	344	247	385	3.34e-23	100
MsG0880045507.01.T01	AT1G12970	36.242	149	70	3	223	346	240	388	1.72e-19	89.7

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Find 51 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCTTTGCCTGAAGCAGT+AGG	0.623092	8:+60288447	MsG0880045507.01.T01:CDS
AAGAAGAAGAAGCAACATCA+CGG	0.576761	8:-60286665	None:intergenic
AAGATTGTTAAGATGAATGT+TGG	0.398024	8:+60288615	MsG0880045507.01.T01:CDS
AATACTGATGCTTATGCAAT+TGG	0.358231	8:+60286837	MsG0880045507.01.T01:CDS
ACCTCACAGATAGAATCTCA+AGG	0.658969	8:-60288482	None:intergenic
AGAAGAAGAAGCAACATCAC+GGG	0.592688	8:-60286664	None:intergenic
AGAAGTTGAAGCAGCCCTAA+CGG	0.603127	8:+60286380	MsG0880045507.01.T01:CDS
AGATTGTTAAGATGAATGTT+GGG	0.528167	8:+60288616	MsG0880045507.01.T01:CDS
AGCTTTGAGCCGATTGTAAT+CGG	0.384731	8:-60288430	None:intergenic
AGCTTTGTGCCGATTACAAT+CGG	0.464135	8:+60288421	MsG0880045507.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATACTGATGCTTATGCAAT+TGG	+	Chr8:60286837-60286856	MsG0880045507.01.T01:CDS	30.0%
ATCATCAAAACCAAGTATAG+TGG	+	Chr8:60286869-60286888	MsG0880045507.01.T01:CDS	30.0%
ATGAAAGGTGGAAATTTCAA+TGG	+	Chr8:60287832-60287851	MsG0880045507.01.T01:intron	30.0%
ATGAAAGGTTGACATTTCAA+TGG	+	Chr8:60287219-60287238	MsG0880045507.01.T01:intron	30.0%
ATTGGTTACCTGATTCATTA+GGG	+	Chr8:60288035-60288054	MsG0880045507.01.T01:intron	30.0%
CACAACAACAATATTTGTCA+TGG	-	Chr8:60286971-60286990	None:intergenic	30.0%
CACTAAAGATGACAGTTATT+TGG	+	Chr8:60286782-60286801	MsG0880045507.01.T01:CDS	30.0%
CCAAATAGGTTAAAGATGAA+AGG	-	Chr8:60288132-60288151	None:intergenic	30.0%
CCTTTCATCTTTAACCTATT+TGG	+	Chr8:60288129-60288148	MsG0880045507.01.T01:intron	30.0%
CGAAGAAGAAACAAAATTCT+TGG	-	Chr8:60286700-60286719	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	60286276	60288815	60286276	ID=MsG0880045507.01;Name=MsG0880045507.01
Chr8	mRNA	60286276	60288815	60286276	ID=MsG0880045507.01.T01;Parent=MsG0880045507.01;Name=MsG0880045507.01.T01;_AED=0.24;_eAED=0.24;_QI=0\|0\|0\|1\|1\|1\|2\|0\|347
Chr8	exon	60286276	60286924	60286276	ID=MsG0880045507.01.T01:exon:12423;Parent=MsG0880045507.01.T01
Chr8	exon	60288421	60288815	60288421	ID=MsG0880045507.01.T01:exon:12424;Parent=MsG0880045507.01.T01
Chr8	CDS	60286276	60286924	60286276	ID=MsG0880045507.01.T01:cds;Parent=MsG0880045507.01.T01
Chr8	CDS	60288421	60288815	60288421	ID=MsG0880045507.01.T01:cds;Parent=MsG0880045507.01.T01

Gene Sequence

>MsG0880045507.01.T01

ATGGATTTATCATCACCGTCGCCATCATTATCACGATCAACAGAAGATGCAGTAGAAGAAATAATGAAAACTCACAGATCATTACCGGCAAGGCCAAGAACAGAAGAAGTTGAAGCAGCCCTAACGGTGGTTGAAAACGCCGACAAAGAAGAATCGTCGAGACTAGAAGCATTTTCTTCATCATCATCGTCTAGAAAATCCAAAGGTTCTTCTTCCATGTCGGAAGAGCTTTTCACAATTTTACAAGAGATGCGGAAAAGTATTGTGTCTTTCGAATGCAAAGAGAAAAAGAGAGATGCTCTTAAACTCTTAGAACTTGAAAAAATTCATGTTCTATTTGATGATTTCATTCTCAAAGCTTCTAATTGCGTTTCAAGTTCTAATAAGTCCCGTGATGTTGCTTCTTCTTCTTCTTCTTCTTCCAAGAATTTTGTTTCTTCTTCGAGTTTATTCGATAAAGAAGGTGTTGAGATTAAGGAGAAGAAGGGTTCAAAGTTAGCATTATTCACTAAAGATGACAGTTATTTGGTGAATAATAAGGCTATGTCTACATTCAAGTTTAATACTGATGCTTATGCAATTGGACACAAGATATCATCAAAACCAAGTATAGTGGATAACTCCTCGATGAAACATGCATCCACTTCAGAGCTTTGTGCCGATTACAATCGGCTCAAAGCTTTGCCTGAAGCAGTAGGACAAATTAAGAGCCTTGAGATTCTATCTGTGAGGTACAACAACATTAAACAATTGCCTACGACAATGTCGAATTTGATTAACCTTAAGGAACTCGTGAGTTTTAATGAGCTGGAGTTTGTTCCTGAAAGTTTGTGTTTTGCTACTAAGATTGTTAAGATGAATGTTGGGAACAATTTTGCTGATATGAGGTCATTGCCAAGGTCTATTGGGAACCTTGAAATGCTTGAGGAATTGGATATTAGTAATAATCAAATACATGCTCTTCCCTATTCTTTTAGGATGCTCACTAGACTTCGAGTATTGAGAGTGGAAGAAAATCCTCTTGAAGTTCCTCCAAGAATATAG

Protein sequence

>MsG0880045507.01.T01

MDLSSPSPSLSRSTEDAVEEIMKTHRSLPARPRTEEVEAALTVVENADKEESSRLEAFSSSSSSRKSKGSSSMSEELFTILQEMRKSIVSFECKEKKRDALKLLELEKIHVLFDDFILKASNCVSSSNKSRDVASSSSSSSKNFVSSSSLFDKEGVEIKEKKGSKLALFTKDDSYLVNNKAMSTFKFNTDAYAIGHKISSKPSIVDNSSMKHASTSELCADYNRLKALPEAVGQIKSLEILSVRYNNIKQLPTTMSNLINLKELVSFNELEFVPESLCFATKIVKMNVGNNFADMRSLPRSIGNLEMLEELDISNNQIHALPYSFRMLTRLRVLRVEENPLEVPPRI*