AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180005991.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005991.01.T01 MTR_1g111400 96.507 687 16 3 1 680 1 686 0.0 1342
MsG0180005991.01.T01 MTR_1g111400 96.617 473 9 2 1 466 1 473 0.0 939
MsG0180005991.01.T01 MTR_8g463650 48.217 645 296 10 48 680 36 654 0.0 554
MsG0180005991.01.T01 MTR_8g463650 51.538 520 234 6 48 557 36 547 6.71e-175 510
MsG0180005991.01.T01 MTR_8g463650 66.570 344 114 1 48 390 36 379 2.05e-158 464
MsG0180005991.01.T01 MTR_8g463650 66.570 344 114 1 48 390 36 379 6.49e-158 463
MsG0180005991.01.T01 MTR_1g076810 53.666 341 155 2 56 394 307 646 2.35e-113 355
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180005991.01.T01 AT3G10420 64.062 704 205 11 1 678 1 682 0.0 818
MsG0180005991.01.T01 AT3G10420 64.845 549 159 9 1 524 1 540 0.0 654
MsG0180005991.01.T01 AT1G73170 50.712 562 248 6 78 634 80 617 0.0 534
MsG0180005991.01.T01 AT1G73170 50.712 562 248 6 78 634 80 617 0.0 533
MsG0180005991.01.T01 AT1G73170 50.000 498 220 6 142 634 16 489 1.42e-157 466
MsG0180005991.01.T01 AT1G33290 53.714 350 148 6 53 394 19 362 2.21e-119 362
MsG0180005991.01.T01 AT1G33290 58.276 290 116 3 108 394 1 288 8.35e-113 342
MsG0180005991.01.T01 AT1G73170 42.507 367 182 6 273 634 1 343 2.23e-80 261
MsG0180005991.01.T01 AT1G33290 49.099 222 88 6 53 254 19 235 2.48e-55 191
MsG0180005991.01.T01 AT1G33290 51.389 72 34 1 323 394 216 286 7.22e-15 76.3

Find 181 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAAGCTCCGCTGTGGTTT+CGG 0.180628 1:-98571508 None:intergenic
ATTGAAGTTGTTATGGATTT+AGG 0.182268 1:+98571600 MsG0180005991.01.T01:CDS
ACCATTATAATTGATGAAAT+TGG 0.186337 1:+98572927 MsG0180005991.01.T01:CDS
GTTTCTTCATGGCTTATTTC+AGG 0.202929 1:-98573628 None:intergenic
TTCAACTGTGGATGCTATTT+TGG 0.203491 1:+98573420 MsG0180005991.01.T01:CDS
TCAAGCTCCGCTGTGGTTTC+GGG 0.211037 1:-98571507 None:intergenic
TCATCAATTATAATGGTTTC+AGG 0.225693 1:-98572921 None:intergenic
TCATCGTCAATTTCAATATC+TGG 0.234846 1:-98574332 None:intergenic
TTGAATCATTCAGGTAAAAT+AGG 0.252962 1:-98575490 None:intergenic
CTAGATTCCCTTCTGGTGAT+TGG 0.254727 1:+98571637 MsG0180005991.01.T01:CDS
TCCAATTTCATCAATTATAA+TGG 0.266424 1:-98572928 None:intergenic
TTAAAATGTTGACCTGATTA+AGG 0.273025 1:-98572414 None:intergenic
GCGTAAATCATCATGGTTAA+TGG 0.273696 1:-98571676 None:intergenic
AGAAGCTGAAGAAGATGATT+TGG 0.281013 1:-98571418 None:intergenic
AGCGGAGCTTGATATGTTTC+TGG 0.292311 1:+98571518 MsG0180005991.01.T01:CDS
GTGGATACATCCAATGAAAT+TGG 0.294748 1:+98572670 MsG0180005991.01.T01:CDS
ACTAGACTTGGAGGGTCTTT+TGG 0.295771 1:-98575380 None:intergenic
TCATGGCTTATTTCAGGTAT+TGG 0.299020 1:-98573622 None:intergenic
ACTATTATCACTCCATTTCA+TGG 0.305396 1:-98573737 None:intergenic
TCTAACATATTTCCCTTCAT+TGG 0.328689 1:+98575526 MsG0180005991.01.T01:three_prime_UTR
TTAAATCCGATGTTTCTTCA+TGG 0.331868 1:-98573639 None:intergenic
CCTTATCTTCAGATCCTTGT+TGG 0.338669 1:+98573050 MsG0180005991.01.T01:CDS
TTTACGCCACGCCATTTCTA+AGG 0.343073 1:+98571692 MsG0180005991.01.T01:CDS
TAACAGACACACAAACAAAT+AGG 0.352563 1:+98571256 MsG0180005991.01.T01:five_prime_UTR
CCACTATTACTACGCGCTTC+AGG 0.363898 1:-98572651 None:intergenic
CTATGCTGCATATTCACATT+TGG 0.364142 1:-98572748 None:intergenic
ATGAACACGACATTCAGTTT+TGG 0.374118 1:-98573386 None:intergenic
TGGACTCATTGAAGTTGTTA+TGG 0.376901 1:+98571593 MsG0180005991.01.T01:CDS
TAGATTCCCTTCTGGTGATT+GGG 0.380201 1:+98571638 MsG0180005991.01.T01:CDS
ATATCTGGAGACTCATTTGA+TGG 0.383132 1:-98574317 None:intergenic
TCCGTCACCTCCAATTTCAT+TGG 0.385683 1:-98572680 None:intergenic
TTCGTATACGGCAGGAGGTT+CGG 0.386900 1:+98575185 MsG0180005991.01.T01:intron
CTGAATGTCGTGTTCATCAT+AGG 0.387994 1:+98573392 MsG0180005991.01.T01:CDS
CCTCTTGCTAGATTCCCTTC+TGG 0.390859 1:+98571630 MsG0180005991.01.T01:CDS
CTGAGTTACGACAGAATTCA+TGG 0.392309 1:+98574079 MsG0180005991.01.T01:CDS
TCCAGCGATGGTTTGCGCTT+CGG 0.392463 1:-98574359 None:intergenic
TGCTAAAATCATACATGATC+TGG 0.404375 1:+98572337 MsG0180005991.01.T01:CDS
CTCGACCAACACGGCAAGTA+AGG 0.408770 1:-98572301 None:intergenic
CAGTATTTGAAGTCCGTCAT+TGG 0.410784 1:+98573566 MsG0180005991.01.T01:CDS
ATTCTTCATTATGCTTTCAA+TGG 0.418087 1:-98573027 None:intergenic
AGCATGCTTCACCAAATCAT+TGG 0.420342 1:-98573599 None:intergenic
CGTAAATCATCATGGTTAAT+GGG 0.421646 1:-98571675 None:intergenic
TTGGTAAAACTACCTTAATC+AGG 0.424584 1:+98572402 MsG0180005991.01.T01:CDS
TTCCTCATGCAGGCATAGGC+AGG 0.427872 1:+98572707 MsG0180005991.01.T01:CDS
TGAAGGGAAATATGTTAGAA+TGG 0.428961 1:-98575522 None:intergenic
TGCTCAAAGAGGAGTTCAAT+TGG 0.429380 1:+98572983 MsG0180005991.01.T01:CDS
TGAGGAAGGAGGTTCTATAT+TGG 0.434005 1:+98572361 MsG0180005991.01.T01:CDS
GGAGGTTCTATATTGGTCAT+TGG 0.436397 1:+98572368 MsG0180005991.01.T01:CDS
GTTTCTGGAACTTCTTCCAT+TGG 0.437811 1:+98571533 MsG0180005991.01.T01:CDS
ATCCCACTCGATCCATGAAA+TGG 0.438370 1:+98573725 MsG0180005991.01.T01:CDS
TCAGAGGGTCTTCGGATTTG+AGG 0.438891 1:-98571441 None:intergenic
GATCGTTACCCAATCAGAAA+TGG 0.439746 1:+98571462 MsG0180005991.01.T01:CDS
GTGAGGATCCATTTCTGATT+GGG 0.440382 1:-98571470 None:intergenic
GGTAACGATCAGAGGGTCTT+CGG 0.440923 1:-98571449 None:intergenic
GGTAGTGGTGGCGGCGGCAA+TGG 0.441263 1:+98575448 MsG0180005991.01.T01:CDS
ATATTGGTCATTGGACCTCC+TGG 0.442400 1:+98572377 MsG0180005991.01.T01:CDS
CAATGACGGACTTCAAATAC+TGG 0.449272 1:-98573565 None:intergenic
TGAGAACAAATACAGGTAAC+TGG 0.450824 1:-98574125 None:intergenic
AGAGTAGAGTACCTTAGAAA+TGG 0.453739 1:-98571703 None:intergenic
GGTGAGGATCCATTTCTGAT+TGG 0.455488 1:-98571471 None:intergenic
GATCCTTGTTGGTGGTATAG+AGG 0.456580 1:+98573061 MsG0180005991.01.T01:CDS
AGTATTTGAAGTCCGTCATT+GGG 0.460558 1:+98573567 MsG0180005991.01.T01:CDS
ATACATGTACAAACCAATGA+AGG 0.465509 1:-98575539 None:intergenic
TTGAATAGAGTGTAACTCTC+GGG 0.466591 1:+98573275 MsG0180005991.01.T01:intron
GCTGATGCAATTCTTGCATC+CGG 0.468276 1:+98574054 MsG0180005991.01.T01:CDS
CAATGAGTCCACCAATCTCT+TGG 0.470658 1:-98571581 None:intergenic
ATAGAGTACATAGTGATTCC+TGG 0.476995 1:+98575214 MsG0180005991.01.T01:CDS
CCTGAAGCGCGTAGTAATAG+TGG 0.478310 1:+98572651 MsG0180005991.01.T01:CDS
TTCTTTATCGTGGAGCCAAA+GGG 0.483101 1:-98574293 None:intergenic
TCAATAATTTCAGAACGTCT+TGG 0.487672 1:-98575259 None:intergenic
CAAAGAGGAGTTCAATTGGT+TGG 0.488544 1:+98572987 MsG0180005991.01.T01:CDS
CCAACAAGGATCTGAAGATA+AGG 0.493089 1:-98573050 None:intergenic
ATTGGCCTTACTTGCCGTGT+TGG 0.495552 1:+98572296 MsG0180005991.01.T01:CDS
CAATTGGTTGGAACAGCACA+TGG 0.496072 1:+98572999 MsG0180005991.01.T01:CDS
GCTGGAAGAGATTGACGCCT+TGG 0.496312 1:+98574376 MsG0180005991.01.T01:CDS
TATCTTCAGATCCTTGTTGG+TGG 0.497033 1:+98573053 MsG0180005991.01.T01:CDS
GAAGGGAAATATGTTAGAAT+GGG 0.500103 1:-98575521 None:intergenic
ACCGAAGCGCAAACCATCGC+TGG 0.503492 1:+98574358 MsG0180005991.01.T01:CDS
GAGTGTAACTCTCGGGGATG+AGG 0.503582 1:+98573282 MsG0180005991.01.T01:intron
AATCGTCAGATGCAAATCAT+TGG 0.503745 1:+98572278 MsG0180005991.01.T01:CDS
CTCTCGGGGATGAGGAAGCC+AGG 0.505259 1:+98573290 MsG0180005991.01.T01:CDS
CAGAGAGACTGCTAGGATGC+TGG 0.505835 1:+98572618 MsG0180005991.01.T01:intron
GTTACCTGTATTTGTTCTCA+AGG 0.506262 1:+98574128 MsG0180005991.01.T01:CDS
TGCAAAAGACAATTCTAGAA+AGG 0.510028 1:+98573323 MsG0180005991.01.T01:CDS
CTTCTTTATCGTGGAGCCAA+AGG 0.510592 1:-98574294 None:intergenic
ATGAAATGGAGTGATAATAG+TGG 0.514888 1:+98573739 MsG0180005991.01.T01:CDS
ATCCTCGGGCTAGAACCCTT+TGG 0.516202 1:+98574278 MsG0180005991.01.T01:CDS
GTACGAGTAGCAAAAGTGAT+GGG 0.518119 1:+98573991 MsG0180005991.01.T01:CDS
GTCATTGGACCTCCTGGTGT+TGG 0.524184 1:+98572383 MsG0180005991.01.T01:CDS
TTGTATCGCCACCAAGAGAT+TGG 0.524330 1:+98571570 MsG0180005991.01.T01:CDS
TGCATCGTATAAGTGCAATT+CGG 0.526874 1:+98572255 MsG0180005991.01.T01:CDS
GGAAACAGAACTAGACTTGG+AGG 0.530671 1:-98575389 None:intergenic
AACTTCTTCCATTGGAGATG+AGG 0.532842 1:+98571541 MsG0180005991.01.T01:CDS
AAATCTGCTGGTAGTGGTGG+CGG 0.535701 1:+98575439 MsG0180005991.01.T01:CDS
GGAAGAGATTGACGCCTTGG+AGG 0.536207 1:+98574379 MsG0180005991.01.T01:CDS
GGGATGAGGAAGCCAGGAAA+AGG 0.537182 1:+98573296 MsG0180005991.01.T01:CDS
CAAGGGAAGAATCTGCAACC+TGG 0.537532 1:-98575347 None:intergenic
ATTCTGTCGTAACTCAGAAC+CGG 0.538742 1:-98574073 None:intergenic
TCCAATGAAATTGGAGGTGA+CGG 0.539462 1:+98572679 MsG0180005991.01.T01:CDS
ATTTGATGGCTTCTTTATCG+TGG 0.539478 1:-98574303 None:intergenic
GGCACCTTGAGAACAAATAC+AGG 0.540365 1:-98574132 None:intergenic
GATTCCTGGTGGAGAGGCTG+TGG 0.540843 1:+98575228 MsG0180005991.01.T01:CDS
GCGTCAATCTCTTCCAGCGA+TGG 0.543519 1:-98574371 None:intergenic
ATGCAGGCATAGGCAGGGCG+AGG 0.546724 1:+98572713 MsG0180005991.01.T01:CDS
TTTGCACAAGTTCAATCTGC+CGG 0.546806 1:-98575282 None:intergenic
TTGATCTTCACTGCACCTCA+TGG 0.546851 1:+98571322 MsG0180005991.01.T01:CDS
TCTTCCATTGGAGATGAGGA+TGG 0.549063 1:+98571545 MsG0180005991.01.T01:CDS
GACGGAGATGTTCCTCATGC+AGG 0.549892 1:+98572697 MsG0180005991.01.T01:CDS
TCTGCTGGTAGTGGTGGCGG+CGG 0.551281 1:+98575442 MsG0180005991.01.T01:CDS
AATCATACATGATCTGGTTG+AGG 0.551401 1:+98572343 MsG0180005991.01.T01:CDS
GGGAAATATGTTAGAATGGG+AGG 0.554166 1:-98575518 None:intergenic
GATGTTCCTCATGCAGGCAT+AGG 0.555685 1:+98572703 MsG0180005991.01.T01:CDS
GACGTTCTGAAATTATTGAC+CGG 0.556854 1:+98575263 MsG0180005991.01.T01:CDS
CAGTTGGCTGCTGAAAAGTC+AGG 0.557070 1:+98575310 MsG0180005991.01.T01:CDS
AGTTCCACAGCCTCTCCACC+AGG 0.563344 1:-98575232 None:intergenic
TTTGAATAGAGTGTAACTCT+CGG 0.564422 1:+98573274 MsG0180005991.01.T01:intron
GGCTGCTGAAAAGTCAGGTA+CGG 0.565693 1:+98575315 MsG0180005991.01.T01:CDS
TTGAACTCCTCTTTGAGCAA+TGG 0.567809 1:-98572979 None:intergenic
AATTCCATCCTCATCTCCAA+TGG 0.572936 1:-98571549 None:intergenic
CAAGTCTTCTTGATGAACGA+TGG 0.574288 1:-98571377 None:intergenic
CAGGCATAGGCAGGGCGAGG+AGG 0.576115 1:+98572716 MsG0180005991.01.T01:CDS
ATAGAAGTAACTGATGACAT+TGG 0.579181 1:+98574027 MsG0180005991.01.T01:CDS
TACTTGCCGTGTTGGTCGAG+CGG 0.579698 1:+98572304 MsG0180005991.01.T01:CDS
TCTGATTGGGTAACGATCAG+AGG 0.580957 1:-98571457 None:intergenic
CATAGTGATTCCTGGTGGAG+AGG 0.582191 1:+98575222 MsG0180005991.01.T01:CDS
TGAGTCCACCAATCTCTTGG+TGG 0.584820 1:-98571578 None:intergenic
TCAACAGCACACGTAAATGT+AGG 0.586604 1:-98573355 None:intergenic
GCAGGAAACAGAACTAGACT+TGG 0.587939 1:-98575392 None:intergenic
GATTGTGCAGAGAGACTGCT+AGG 0.591378 1:+98572611 MsG0180005991.01.T01:intron
TTCACTGCACCTCATGGCAA+AGG 0.591521 1:+98571328 MsG0180005991.01.T01:CDS
TACATGTACAAACCAATGAA+GGG 0.593601 1:-98575538 None:intergenic
GATACATCCAATGAAATTGG+AGG 0.595729 1:+98572673 MsG0180005991.01.T01:CDS
GCAAGTACCATTGCTCAAAG+AGG 0.597613 1:+98572972 MsG0180005991.01.T01:CDS
GGTTGCAGATTCTTCCCTTG+AGG 0.597711 1:+98575350 MsG0180005991.01.T01:CDS
GCAATGGTACCACTGTCACT+AGG 0.597867 1:+98575464 MsG0180005991.01.T01:CDS
TATCGCCACCAAGAGATTGG+TGG 0.601041 1:+98571573 MsG0180005991.01.T01:CDS
ATACATGATCTGGTTGAGGA+AGG 0.605235 1:+98572347 MsG0180005991.01.T01:CDS
ACTCCATTTCATGGATCGAG+TGG 0.607616 1:-98573728 None:intergenic
CAGGTACGGATCAAAACACC+AGG 0.608144 1:+98575329 MsG0180005991.01.T01:CDS
AGTACGAGTAGCAAAAGTGA+TGG 0.608386 1:+98573990 MsG0180005991.01.T01:CDS
CTGATTGGGTAACGATCAGA+GGG 0.608679 1:-98571456 None:intergenic
AGAAAAGGGTTGTACCTCCA+AGG 0.608824 1:-98574393 None:intergenic
CATGATCTGGTTGAGGAAGG+AGG 0.608961 1:+98572350 MsG0180005991.01.T01:CDS
TTGCAGGTGTACACTTGCAT+TGG 0.612087 1:-98573784 None:intergenic
AAGACAATTCTAGAAAGGAA+AGG 0.613874 1:+98573328 MsG0180005991.01.T01:CDS
ATAGTGGATCTGTGATCAAG+AGG 0.617190 1:+98573755 MsG0180005991.01.T01:CDS
TCCTCATGCAGGCATAGGCA+GGG 0.617902 1:+98572708 MsG0180005991.01.T01:CDS
TTCATTGCAGTCCAATACCA+TGG 0.618171 1:+98574229 MsG0180005991.01.T01:intron
TGGCGTGGCGTAAATCATCA+TGG 0.622075 1:-98571683 None:intergenic
ATTGTTGTTCCTTTGCCATG+AGG 0.624111 1:-98571337 None:intergenic
ACTTGTGCAAAGCTATCAGT+TGG 0.624557 1:+98575294 MsG0180005991.01.T01:CDS
GAAATGACCCAATCACCAGA+AGG 0.627070 1:-98571645 None:intergenic
CGTGTTGGTCGAGCGGTGAG+TGG 0.630353 1:+98572311 MsG0180005991.01.T01:CDS
CTCCATTTCATGGATCGAGT+GGG 0.632603 1:-98573727 None:intergenic
AATAAGCCATGAAGAAACAT+CGG 0.634610 1:+98573633 MsG0180005991.01.T01:CDS
CGACAGAATTCATGGATCCG+TGG 0.635339 1:+98574087 MsG0180005991.01.T01:CDS
AACATGTACAGTCGTGTATG+TGG 0.636438 1:+98575571 MsG0180005991.01.T01:three_prime_UTR
GCCCTGCCTATGCCTGCATG+AGG 0.636859 1:-98572709 None:intergenic
AGCCAAAGGGTTCTAGCCCG+AGG 0.638981 1:-98574280 None:intergenic
GTTTCGGGTTGTGAATTCGA+CGG 0.639045 1:-98571492 None:intergenic
ATGAGCTATCAATACCAGAT+CGG 0.639378 1:-98572232 None:intergenic
AAATGACCCAATCACCAGAA+GGG 0.644980 1:-98571644 None:intergenic
GAAACAGAACTAGACTTGGA+GGG 0.645076 1:-98575388 None:intergenic
AATAGGAAGCCTAGTGACAG+TGG 0.645088 1:-98575473 None:intergenic
GGGTTGTGAATTCGACGGTG+AGG 0.645266 1:-98571487 None:intergenic
CACTCACCGCTCGACCAACA+CGG 0.652025 1:-98572310 None:intergenic
TGAATAGAGTGTAACTCTCG+GGG 0.654334 1:+98573276 MsG0180005991.01.T01:intron
GAACAAATACAGGTAACTGG+TGG 0.660255 1:-98574122 None:intergenic
AGAGTACCTTAGAAATGGCG+TGG 0.660342 1:-98571698 None:intergenic
CCAGAAGGGAATCTAGCAAG+AGG 0.661778 1:-98571630 None:intergenic
TACGAGTAGCAAAAGTGATG+GGG 0.668625 1:+98573992 MsG0180005991.01.T01:CDS
AATGCAAGTGTACACCTGCA+AGG 0.668958 1:+98573786 MsG0180005991.01.T01:CDS
TGACGGACTTCAAATACTGG+AGG 0.672492 1:-98573562 None:intergenic
AAACATATCAAGCTCCGCTG+TGG 0.679973 1:-98571514 None:intergenic
GCACCTCTATACCACCAACA+AGG 0.695466 1:-98573064 None:intergenic
GAGTACATAGTGATTCCTGG+TGG 0.700030 1:+98575217 MsG0180005991.01.T01:CDS
GGTGGAATTTCGCAACACCA+CGG 0.701018 1:-98574104 None:intergenic
ACAGCACACGTAAATGTAGG+TGG 0.701363 1:-98573352 None:intergenic
TCATAGGTTAGATTCAACTG+TGG 0.703566 1:+98573408 MsG0180005991.01.T01:CDS
TTCTGACAGAGAGTATGACG+AGG 0.719203 1:+98573687 MsG0180005991.01.T01:CDS
TTCACAACCCGAAACCACAG+CGG 0.742134 1:+98571500 MsG0180005991.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTTACATTAATTAATTAAT+TGG + Chr1:98571905-98571924 MsG0180005991.01.T01:intron 10.0%
!! TTAAACTAGATAAAATAAAA+AGG - Chr1:98572574-98572593 None:intergenic 10.0%
!! TTATTATTATTATGAATAAG+TGG - Chr1:98571760-98571779 None:intergenic 10.0%
!!! CTTATTTTATTTCTTAATAA+CGG + Chr1:98573922-98573941 MsG0180005991.01.T01:intron 10.0%
!!! TTATTTTATTTCTTAATAAC+GGG + Chr1:98573923-98573942 MsG0180005991.01.T01:intron 10.0%
!! AACACAATAATAAATAATCT+AGG - Chr1:98575127-98575146 None:intergenic 15.0%
!!! AATTTTATTGTATTCGTATA+CGG + Chr1:98575173-98575192 MsG0180005991.01.T01:intron 15.0%
!! AAAATTCATTATAAGGCAAA+AGG - Chr1:98574203-98574222 None:intergenic 20.0%
!! AAATTAGATACTAATTGAGT+GGG - Chr1:98574420-98574439 None:intergenic 20.0%
!! ACCATTATAATTGATGAAAT+TGG + Chr1:98572927-98572946 MsG0180005991.01.T01:CDS 20.0%
!! AGGAACAAAAATTCATTATA+AGG - Chr1:98574210-98574229 None:intergenic 20.0%
!! ATTATAAATCATAACCTTGA+AGG - Chr1:98573112-98573131 None:intergenic 20.0%
!! GCAGTATTTATTTAGTTATT+TGG + Chr1:98573499-98573518 MsG0180005991.01.T01:intron 20.0%
!! GTAAAGTAAATAAAGAACAT+TGG - Chr1:98571891-98571910 None:intergenic 20.0%
!! TCCAATTTCATCAATTATAA+TGG - Chr1:98572931-98572950 None:intergenic 20.0%
!! TGATCTTAAAAAATGTTTAC+AGG - Chr1:98574977-98574996 None:intergenic 20.0%
!! TTAAACAATTGTGTTTGAAT+TGG + Chr1:98575085-98575104 MsG0180005991.01.T01:intron 20.0%
!!! TCAGTTTGTATTTTTAATGT+GGG + Chr1:98571863-98571882 MsG0180005991.01.T01:intron 20.0%
!!! TTTGTTTGGTTTATTGTTAT+AGG + Chr1:98572187-98572206 MsG0180005991.01.T01:intron 20.0%
! AAAATAAAAAGGAAACTGAC+AGG - Chr1:98572563-98572582 None:intergenic 25.0%
! AATTGTTTATCCAAAAACAG+AGG - Chr1:98571730-98571749 None:intergenic 25.0%
! ATAAATGCGCTAAAAAGAAA+AGG - Chr1:98574551-98574570 None:intergenic 25.0%
! ATAACTAAGTAAATGTCGAA+AGG + Chr1:98572125-98572144 MsG0180005991.01.T01:intron 25.0%
! ATAACTCAAATTTCACAAGT+CGG - Chr1:98574911-98574930 None:intergenic 25.0%
! ATATTCCATTATAGAAGATG+AGG - Chr1:98573454-98573473 None:intergenic 25.0%
! ATCAATAAACATCATTAACG+TGG - Chr1:98573248-98573267 None:intergenic 25.0%
! ATTCTTCATTATGCTTTCAA+TGG - Chr1:98573030-98573049 None:intergenic 25.0%
! ATTGAAGTTGTTATGGATTT+AGG + Chr1:98571600-98571619 MsG0180005991.01.T01:CDS 25.0%
! GAAATTAGATACTAATTGAG+TGG - Chr1:98574421-98574440 None:intergenic 25.0%
! TAAAAATCGAACTACATTTC+AGG - Chr1:98575662-98575681 None:intergenic 25.0%
! TCATCAATTATAATGGTTTC+AGG - Chr1:98572924-98572943 None:intergenic 25.0%
! TTAAAATGTTGACCTGATTA+AGG - Chr1:98572417-98572436 None:intergenic 25.0%
! TTGAATCATTCAGGTAAAAT+AGG - Chr1:98575493-98575512 None:intergenic 25.0%
!! TAAACCAAATTGTAAGTTGA+GGG + Chr1:98574941-98574960 MsG0180005991.01.T01:intron 25.0%
!! TAAGAAATTTGTTCCTTCAA+TGG - Chr1:98573894-98573913 None:intergenic 25.0%
!! TCTAAGATTAAAGTCTGTAA+AGG - Chr1:98574863-98574882 None:intergenic 25.0%
!! TGAAATCTTTGTATTTTCTG+TGG - Chr1:98575637-98575656 None:intergenic 25.0%
!! TTGATTCAATCTTTGAAAGA+AGG - Chr1:98573177-98573196 None:intergenic 25.0%
!! TTTGGTTTATTGTTATAGGT+TGG + Chr1:98572191-98572210 MsG0180005991.01.T01:intron 25.0%
!!! AATGGATATAATGGTTTGTT+TGG + Chr1:98572173-98572192 MsG0180005991.01.T01:intron 25.0%
!!! CAGTTTGTATTTTTAATGTG+GGG + Chr1:98571864-98571883 MsG0180005991.01.T01:intron 25.0%
!!! CTCAGTTTGTATTTTTAATG+TGG + Chr1:98571862-98571881 MsG0180005991.01.T01:intron 25.0%
!!! CTCTTATTTATTTTCCTTCA+AGG + Chr1:98573095-98573114 MsG0180005991.01.T01:intron 25.0%
!!! CTGCAAGGTAAATTATTTTT+GGG + Chr1:98573801-98573820 MsG0180005991.01.T01:intron 25.0%
!!! TTGAAGAGTAATGGATATAA+TGG + Chr1:98572164-98572183 MsG0180005991.01.T01:intron 25.0%
!!! TTTCTGATTTTTTAACTCGA+GGG + Chr1:98575035-98575054 MsG0180005991.01.T01:intron 25.0%
!!! TTTTTGTTGTTGAAGAGTAA+TGG + Chr1:98572155-98572174 MsG0180005991.01.T01:intron 25.0%
AAATATTTCGCACAGAAGAT+GGG - Chr1:98574456-98574475 None:intergenic 30.0%
AACTGATAACATACGAGTTT+AGG - Chr1:98572049-98572068 None:intergenic 30.0%
AATAAGCCATGAAGAAACAT+CGG + Chr1:98573633-98573652 MsG0180005991.01.T01:CDS 30.0%
AATTGACTGCTTCATCTTTA+TGG + Chr1:98572800-98572819 MsG0180005991.01.T01:intron 30.0%
ACTATTATCACTCCATTTCA+TGG - Chr1:98573740-98573759 None:intergenic 30.0%
AGAGAATATTATCAGGATTC+AGG + Chr1:98573839-98573858 MsG0180005991.01.T01:intron 30.0%
ATACATGTACAAACCAATGA+AGG - Chr1:98575542-98575561 None:intergenic 30.0%
ATAGAAGTAACTGATGACAT+TGG + Chr1:98574027-98574046 MsG0180005991.01.T01:CDS 30.0%
ATGAAATGGAGTGATAATAG+TGG + Chr1:98573739-98573758 MsG0180005991.01.T01:CDS 30.0%
ATTGAAGCAATTGTTGAAAG+AGG - Chr1:98574173-98574192 None:intergenic 30.0%
ATTTGCAATCTAATCTTCTG+TGG + Chr1:98572837-98572856 MsG0180005991.01.T01:intron 30.0%
CCAAAAATAATTTACCTTGC+AGG - Chr1:98573803-98573822 None:intergenic 30.0%
CGTAAATCATCATGGTTAAT+GGG - Chr1:98571678-98571697 None:intergenic 30.0%
CTAAACCAAATTGTAAGTTG+AGG + Chr1:98574940-98574959 MsG0180005991.01.T01:intron 30.0%
GAAGGGAAATATGTTAGAAT+GGG - Chr1:98575524-98575543 None:intergenic 30.0%
GATCATATCACATTTAGTCT+AGG + Chr1:98574992-98575011 MsG0180005991.01.T01:intron 30.0%
GTATTCCTCATCTTCTATAA+TGG + Chr1:98573446-98573465 MsG0180005991.01.T01:intron 30.0%
TAAATATTTCGCACAGAAGA+TGG - Chr1:98574457-98574476 None:intergenic 30.0%
TAACAGACACACAAACAAAT+AGG + Chr1:98571256-98571275 MsG0180005991.01.T01:five_prime_UTR 30.0%
TACATGTACAAACCAATGAA+GGG - Chr1:98575541-98575560 None:intergenic 30.0%
TAGAAAATCTTCTCTGTTAC+AGG + Chr1:98573535-98573554 MsG0180005991.01.T01:intron 30.0%
TAGTACTAATCTCACTCATT+TGG + Chr1:98572774-98572793 MsG0180005991.01.T01:intron 30.0%
TCAATAATTTCAGAACGTCT+TGG - Chr1:98575262-98575281 None:intergenic 30.0%
TCATCGTCAATTTCAATATC+TGG - Chr1:98574335-98574354 None:intergenic 30.0%
TCTAACATATTTCCCTTCAT+TGG + Chr1:98575526-98575545 MsG0180005991.01.T01:three_prime_UTR 30.0%
TCTAACTTATCCTGCAAAAT+TGG + Chr1:98574656-98574675 MsG0180005991.01.T01:intron 30.0%
TGAAAGTTACACATTAAGTG+TGG - Chr1:98574732-98574751 None:intergenic 30.0%
TGAAGGGAAATATGTTAGAA+TGG - Chr1:98575525-98575544 None:intergenic 30.0%
TGCTAAAATCATACATGATC+TGG + Chr1:98572337-98572356 MsG0180005991.01.T01:CDS 30.0%
TTAAATAGATCCATCCATTC+CGG + Chr1:98573145-98573164 MsG0180005991.01.T01:intron 30.0%
TTAAATCCGATGTTTCTTCA+TGG - Chr1:98573642-98573661 None:intergenic 30.0%
TTCCAAATAAACAAGTCACT+TGG - Chr1:98571817-98571836 None:intergenic 30.0%
TTGGTAAAACTACCTTAATC+AGG + Chr1:98572402-98572421 MsG0180005991.01.T01:CDS 30.0%
TTTCAACAATTGCTTCAATG+TGG + Chr1:98574174-98574193 MsG0180005991.01.T01:intron 30.0%
TTTGAATAGAGTGTAACTCT+CGG + Chr1:98573274-98573293 MsG0180005991.01.T01:intron 30.0%
! AAATTTCACAAGTCGGTTTA+GGG - Chr1:98574904-98574923 None:intergenic 30.0%
! AAGACAATTCTAGAAAGGAA+AGG + Chr1:98573328-98573347 MsG0180005991.01.T01:CDS 30.0%
! ACTTACAATTTGGTTTAGAG+AGG - Chr1:98574938-98574957 None:intergenic 30.0%
! ACTTTACAAACCAATTTTGC+AGG - Chr1:98574669-98574688 None:intergenic 30.0%
! CCTGCAAGGTAAATTATTTT+TGG + Chr1:98573800-98573819 MsG0180005991.01.T01:intron 30.0%
! CTTTTTACTATGTCTGTATG+TGG + Chr1:98572442-98572461 MsG0180005991.01.T01:intron 30.0%
! GAGGAAATTTTGAATCATTC+AGG - Chr1:98575502-98575521 None:intergenic 30.0%
! GGATGATTTTTCCAATGATT+TGG + Chr1:98573588-98573607 MsG0180005991.01.T01:CDS 30.0%
! TCAATCTTTGAAAGAAGGAT+GGG - Chr1:98573172-98573191 None:intergenic 30.0%
! TCATTTTCATGTTCCATTGA+AGG + Chr1:98573878-98573897 MsG0180005991.01.T01:intron 30.0%
! TGCAAAAGACAATTCTAGAA+AGG + Chr1:98573323-98573342 MsG0180005991.01.T01:CDS 30.0%
! TTCAATCTTTGAAAGAAGGA+TGG - Chr1:98573173-98573192 None:intergenic 30.0%
! TTTGGGTCTTATAGAATGAT+TGG + Chr1:98574525-98574544 MsG0180005991.01.T01:intron 30.0%
!!! GTTATAGGTTGGTGATTTTT+CGG + Chr1:98572202-98572221 MsG0180005991.01.T01:intron 30.0%
!!! GTTTCTGATTTTTTAACTCG+AGG + Chr1:98575034-98575053 MsG0180005991.01.T01:intron 30.0%
AAAGAGGTAGCAATAGCAAA+AGG - Chr1:98574157-98574176 None:intergenic 35.0%
AAAGTCTGTAAAGGATCTGT+TGG - Chr1:98574854-98574873 None:intergenic 35.0%
AAGAGGTAGCAATAGCAAAA+GGG - Chr1:98574156-98574175 None:intergenic 35.0%
AAGGCAGTAAAAATGATCCT+CGG + Chr1:98574263-98574282 MsG0180005991.01.T01:CDS 35.0%
AAGTCTGTAAAGGATCTGTT+GGG - Chr1:98574853-98574872 None:intergenic 35.0%
AATCATACATGATCTGGTTG+AGG + Chr1:98572343-98572362 MsG0180005991.01.T01:CDS 35.0%
AATCGTCAGATGCAAATCAT+TGG + Chr1:98572278-98572297 MsG0180005991.01.T01:CDS 35.0%
ACATCCCTCAACTTACAATT+TGG - Chr1:98574948-98574967 None:intergenic 35.0%
AGAAGCTGAAGAAGATGATT+TGG - Chr1:98571421-98571440 None:intergenic 35.0%
ATATCTGGAGACTCATTTGA+TGG - Chr1:98574320-98574339 None:intergenic 35.0%
ATGAGCTATCAATACCAGAT+CGG - Chr1:98572235-98572254 None:intergenic 35.0%
CACACTACAAAAACTCAGTT+TGG - Chr1:98572083-98572102 None:intergenic 35.0%
CACTAGCAGTTCTTAGATTT+GGG + Chr1:98574628-98574647 MsG0180005991.01.T01:intron 35.0%
CATGCATCATACGTAAAAGT+GGG - Chr1:98571956-98571975 None:intergenic 35.0%
CGCGCTATACATATTTCATT+AGG - Chr1:98573222-98573241 None:intergenic 35.0%
CTATGCTGCATATTCACATT+TGG - Chr1:98572751-98572770 None:intergenic 35.0%
CTTCAAGTGCTTAGTTGTTT+GGG + Chr1:98574508-98574527 MsG0180005991.01.T01:intron 35.0%
GATACATCCAATGAAATTGG+AGG + Chr1:98572673-98572692 MsG0180005991.01.T01:CDS 35.0%
GCGTAAATCATCATGGTTAA+TGG - Chr1:98571679-98571698 None:intergenic 35.0%
GCTCTATAATGTCAAGTCTT+AGG - Chr1:98574771-98574790 None:intergenic 35.0%
GTCCAAAAAATAGGTCACTT+GGG - Chr1:98574798-98574817 None:intergenic 35.0%
GTGGATACATCCAATGAAAT+TGG + Chr1:98572670-98572689 MsG0180005991.01.T01:CDS 35.0%
GTTACCTGTATTTGTTCTCA+AGG + Chr1:98574128-98574147 MsG0180005991.01.T01:CDS 35.0%
GTTTCTTCATGGCTTATTTC+AGG - Chr1:98573631-98573650 None:intergenic 35.0%
TACCATGGCAAAAATGGTAA+AGG + Chr1:98574244-98574263 MsG0180005991.01.T01:CDS 35.0%
TCATAGGTTAGATTCAACTG+TGG + Chr1:98573408-98573427 MsG0180005991.01.T01:CDS 35.0%
TGAGAACAAATACAGGTAAC+TGG - Chr1:98574128-98574147 None:intergenic 35.0%
TGCATCGTATAAGTGCAATT+CGG + Chr1:98572255-98572274 MsG0180005991.01.T01:CDS 35.0%
TGCTGGTAGAGAATATTATC+AGG + Chr1:98573832-98573851 MsG0180005991.01.T01:intron 35.0%
TGGAAAAATCATCCCAATGA+CGG - Chr1:98573582-98573601 None:intergenic 35.0%
TGGACTCATTGAAGTTGTTA+TGG + Chr1:98571593-98571612 MsG0180005991.01.T01:CDS 35.0%
TGTCCAAAAAATAGGTCACT+TGG - Chr1:98574799-98574818 None:intergenic 35.0%
TTATTGTATTCGTATACGGC+AGG + Chr1:98575177-98575196 MsG0180005991.01.T01:intron 35.0%
TTGAATAGAGTGTAACTCTC+GGG + Chr1:98573275-98573294 MsG0180005991.01.T01:intron 35.0%
TTTACCTCAGAAAAATCTGC+TGG + Chr1:98575427-98575446 MsG0180005991.01.T01:CDS 35.0%
! ACAATTTGGTTTAGAGAGGT+TGG - Chr1:98574934-98574953 None:intergenic 35.0%
! AGAGTAGAGTACCTTAGAAA+TGG - Chr1:98571706-98571725 None:intergenic 35.0%
! AGTATTTGAAGTCCGTCATT+GGG + Chr1:98573567-98573586 MsG0180005991.01.T01:CDS 35.0%
! ATGAACACGACATTCAGTTT+TGG - Chr1:98573389-98573408 None:intergenic 35.0%
! ATTTGATGGCTTCTTTATCG+TGG - Chr1:98574306-98574325 None:intergenic 35.0%
! CAAATTTCACAAGTCGGTTT+AGG - Chr1:98574905-98574924 None:intergenic 35.0%
! CAATCTTTGAAAGAAGGATG+GGG - Chr1:98573171-98573190 None:intergenic 35.0%
! GGTAAAACTTCTTTTCTTGC+AGG - Chr1:98575413-98575432 None:intergenic 35.0%
! TCATGGCTTATTTCAGGTAT+TGG - Chr1:98573625-98573644 None:intergenic 35.0%
!! AGCCAAGTGACTTGTTTATT+TGG + Chr1:98571812-98571831 MsG0180005991.01.T01:intron 35.0%
!! GACGTTCTGAAATTATTGAC+CGG + Chr1:98575263-98575282 MsG0180005991.01.T01:CDS 35.0%
!! GTTTTCTTTGAAAATGCCAC+TGG + Chr1:98572517-98572536 MsG0180005991.01.T01:intron 35.0%
!! TACCATTTTTGCCATGGTAT+TGG - Chr1:98574243-98574262 None:intergenic 35.0%
!! TTCAACTGTGGATGCTATTT+TGG + Chr1:98573420-98573439 MsG0180005991.01.T01:CDS 35.0%
!!! TTAACTCGAGGGCTATTTTT+CGG + Chr1:98575046-98575065 MsG0180005991.01.T01:intron 35.0%
AAATGACCCAATCACCAGAA+GGG - Chr1:98571647-98571666 None:intergenic 40.0%
AACATGTACAGTCGTGTATG+TGG + Chr1:98575571-98575590 MsG0180005991.01.T01:three_prime_UTR 40.0%
AACTTCTTCCATTGGAGATG+AGG + Chr1:98571541-98571560 MsG0180005991.01.T01:CDS 40.0%
AATTCCATCCTCATCTCCAA+TGG - Chr1:98571552-98571571 None:intergenic 40.0%
ACTAATTGAGTGGGCAGAAA+AGG - Chr1:98574411-98574430 None:intergenic 40.0%
ACTATGTCTGTATGTGGAAC+TGG + Chr1:98572448-98572467 MsG0180005991.01.T01:intron 40.0%
ACTTGTGCAAAGCTATCAGT+TGG + Chr1:98575294-98575313 MsG0180005991.01.T01:CDS 40.0%
AGCATGCTTCACCAAATCAT+TGG - Chr1:98573602-98573621 None:intergenic 40.0%
AGGCAGTAAAAATGATCCTC+GGG + Chr1:98574264-98574283 MsG0180005991.01.T01:CDS 40.0%
AGTACGAGTAGCAAAAGTGA+TGG + Chr1:98573990-98574009 MsG0180005991.01.T01:CDS 40.0%
ATACATGATCTGGTTGAGGA+AGG + Chr1:98572347-98572366 MsG0180005991.01.T01:CDS 40.0%
ATTCTGTCGTAACTCAGAAC+CGG - Chr1:98574076-98574095 None:intergenic 40.0%
CAAAGAGGAGTTCAATTGGT+TGG + Chr1:98572987-98573006 MsG0180005991.01.T01:CDS 40.0%
CAAGTCTTCTTGATGAACGA+TGG - Chr1:98571380-98571399 None:intergenic 40.0%
CACAAATGAGCATACGCAAA+AGG - Chr1:98574584-98574603 None:intergenic 40.0%
CCAAATCTAAGAACTGCTAG+TGG - Chr1:98574630-98574649 None:intergenic 40.0%
CCAACAAGGATCTGAAGATA+AGG - Chr1:98573053-98573072 None:intergenic 40.0%
CCACTAGCAGTTCTTAGATT+TGG + Chr1:98574627-98574646 MsG0180005991.01.T01:intron 40.0%
CCATGCATCATACGTAAAAG+TGG - Chr1:98571957-98571976 None:intergenic 40.0%
CCTTATCTTCAGATCCTTGT+TGG + Chr1:98573050-98573069 MsG0180005991.01.T01:CDS 40.0%
CTAATTGAGTGGGCAGAAAA+GGG - Chr1:98574410-98574429 None:intergenic 40.0%
CTGAATGTCGTGTTCATCAT+AGG + Chr1:98573392-98573411 MsG0180005991.01.T01:CDS 40.0%
CTGAGTTACGACAGAATTCA+TGG + Chr1:98574079-98574098 MsG0180005991.01.T01:CDS 40.0%
GAAACAGAACTAGACTTGGA+GGG - Chr1:98575391-98575410 None:intergenic 40.0%
GAACAAATACAGGTAACTGG+TGG - Chr1:98574125-98574144 None:intergenic 40.0%
GATCGTTACCCAATCAGAAA+TGG + Chr1:98571462-98571481 MsG0180005991.01.T01:CDS 40.0%
GCTTCAAGTGCTTAGTTGTT+TGG + Chr1:98574507-98574526 MsG0180005991.01.T01:intron 40.0%
GGAGGTTCTATATTGGTCAT+TGG + Chr1:98572368-98572387 MsG0180005991.01.T01:CDS 40.0%
GGGAAATATGTTAGAATGGG+AGG - Chr1:98575521-98575540 None:intergenic 40.0%
GTACGAGTAGCAAAAGTGAT+GGG + Chr1:98573991-98574010 MsG0180005991.01.T01:CDS 40.0%
GTCCAATACCATGGCAAAAA+TGG + Chr1:98574238-98574257 MsG0180005991.01.T01:intron 40.0%
GTGAGGATCCATTTCTGATT+GGG - Chr1:98571473-98571492 None:intergenic 40.0%
GTGGTCTGTGTCCAAAAAAT+AGG - Chr1:98574807-98574826 None:intergenic 40.0%
TACGAGTAGCAAAAGTGATG+GGG + Chr1:98573992-98574011 MsG0180005991.01.T01:CDS 40.0%
TAGATTCCCTTCTGGTGATT+GGG + Chr1:98571638-98571657 MsG0180005991.01.T01:CDS 40.0%
TATCTTCAGATCCTTGTTGG+TGG + Chr1:98573053-98573072 MsG0180005991.01.T01:CDS 40.0%
TCAACAGCACACGTAAATGT+AGG - Chr1:98573358-98573377 None:intergenic 40.0%
TCAAGTGGTCTGATATCACA+TGG + Chr1:98574827-98574846 MsG0180005991.01.T01:intron 40.0%
TCAGAAAAATCTGCTGGTAG+TGG + Chr1:98575433-98575452 MsG0180005991.01.T01:CDS 40.0%
TCCAATGAAATTGGAGGTGA+CGG + Chr1:98572679-98572698 MsG0180005991.01.T01:CDS 40.0%
TGAATAGAGTGTAACTCTCG+GGG + Chr1:98573276-98573295 MsG0180005991.01.T01:intron 40.0%
TGAGGAAGGAGGTTCTATAT+TGG + Chr1:98572361-98572380 MsG0180005991.01.T01:CDS 40.0%
TGCTCAAAGAGGAGTTCAAT+TGG + Chr1:98572983-98573002 MsG0180005991.01.T01:CDS 40.0%
TTCATTGCAGTCCAATACCA+TGG + Chr1:98574229-98574248 MsG0180005991.01.T01:intron 40.0%
TTCTTTATCGTGGAGCCAAA+GGG - Chr1:98574296-98574315 None:intergenic 40.0%
TTGAACTCCTCTTTGAGCAA+TGG - Chr1:98572982-98573001 None:intergenic 40.0%
TTTGCACAAGTTCAATCTGC+CGG - Chr1:98575285-98575304 None:intergenic 40.0%
! ACTACCAGCAGATTTTTCTG+AGG - Chr1:98575434-98575453 None:intergenic 40.0%
! ATGGTATTGGACTGCAATGA+AGG - Chr1:98574230-98574249 None:intergenic 40.0%
! ATTGTTGTTCCTTTGCCATG+AGG - Chr1:98571340-98571359 None:intergenic 40.0%
! CAGTATTTGAAGTCCGTCAT+TGG + Chr1:98573566-98573585 MsG0180005991.01.T01:CDS 40.0%
! CTCTACTCTACCTCTGTTTT+TGG + Chr1:98571717-98571736 MsG0180005991.01.T01:intron 40.0%
! CTTTTGCACTTTCCTTTTCC+TGG - Chr1:98573311-98573330 None:intergenic 40.0%
! CTTTTGGTACTTAGCCTCAA+GGG - Chr1:98575367-98575386 None:intergenic 40.0%
! TCTTTTGGTACTTAGCCTCA+AGG - Chr1:98575368-98575387 None:intergenic 40.0%
!! AAGGTAGTTTTACCAACACC+AGG - Chr1:98572398-98572417 None:intergenic 40.0%
!! ATAGTGGATCTGTGATCAAG+AGG + Chr1:98573755-98573774 MsG0180005991.01.T01:CDS 40.0%
!! CAATGACGGACTTCAAATAC+TGG - Chr1:98573568-98573587 None:intergenic 40.0%
!! CCACTTTTACGTATGATGCA+TGG + Chr1:98571954-98571973 MsG0180005991.01.T01:intron 40.0%
!! GTTTCTGGAACTTCTTCCAT+TGG + Chr1:98571533-98571552 MsG0180005991.01.T01:CDS 40.0%
!! TGCCTTTACCATTTTTGCCA+TGG - Chr1:98574249-98574268 None:intergenic 40.0%
!!! ATTTTTGGGTTTGCATGTGC+TGG + Chr1:98573815-98573834 MsG0180005991.01.T01:intron 40.0%
!!! GACCCAAGTGACCTATTTTT+TGG + Chr1:98574793-98574812 MsG0180005991.01.T01:intron 40.0%
AAACATATCAAGCTCCGCTG+TGG - Chr1:98571517-98571536 None:intergenic 45.0%
AATAGGAAGCCTAGTGACAG+TGG - Chr1:98575476-98575495 None:intergenic 45.0%
AATGCAAGTGTACACCTGCA+AGG + Chr1:98573786-98573805 MsG0180005991.01.T01:CDS 45.0%
ACAGCACACGTAAATGTAGG+TGG - Chr1:98573355-98573374 None:intergenic 45.0%
ACTCCATTTCATGGATCGAG+TGG - Chr1:98573731-98573750 None:intergenic 45.0%
AGAAAAGGGTTGTACCTCCA+AGG - Chr1:98574396-98574415 None:intergenic 45.0%
AGCGGAGCTTGATATGTTTC+TGG + Chr1:98571518-98571537 MsG0180005991.01.T01:CDS 45.0%
ATATTGGTCATTGGACCTCC+TGG + Chr1:98572377-98572396 MsG0180005991.01.T01:CDS 45.0%
ATCCCACTCGATCCATGAAA+TGG + Chr1:98573725-98573744 MsG0180005991.01.T01:CDS 45.0%
CAATGAGTCCACCAATCTCT+TGG - Chr1:98571584-98571603 None:intergenic 45.0%
CAATTGGTTGGAACAGCACA+TGG + Chr1:98572999-98573018 MsG0180005991.01.T01:CDS 45.0%
CAGAAACAAACACAGTCCAG+TGG - Chr1:98572536-98572555 None:intergenic 45.0%
CTAGATTCCCTTCTGGTGAT+TGG + Chr1:98571637-98571656 MsG0180005991.01.T01:CDS 45.0%
CTCCATTTCATGGATCGAGT+GGG - Chr1:98573730-98573749 None:intergenic 45.0%
CTGATTGGGTAACGATCAGA+GGG - Chr1:98571459-98571478 None:intergenic 45.0%
CTTCTTTATCGTGGAGCCAA+AGG - Chr1:98574297-98574316 None:intergenic 45.0%
GAAATGACCCAATCACCAGA+AGG - Chr1:98571648-98571667 None:intergenic 45.0%
GCAAGTACCATTGCTCAAAG+AGG + Chr1:98572972-98572991 MsG0180005991.01.T01:CDS 45.0%
GCAGGAAACAGAACTAGACT+TGG - Chr1:98575395-98575414 None:intergenic 45.0%
GCTGATGCAATTCTTGCATC+CGG + Chr1:98574054-98574073 MsG0180005991.01.T01:CDS 45.0%
GGAAACAGAACTAGACTTGG+AGG - Chr1:98575392-98575411 None:intergenic 45.0%
GGCACCTTGAGAACAAATAC+AGG - Chr1:98574135-98574154 None:intergenic 45.0%
GGTGAGGATCCATTTCTGAT+TGG - Chr1:98571474-98571493 None:intergenic 45.0%
GTGATATCAGACCACTTGAG+TGG - Chr1:98574826-98574845 None:intergenic 45.0%
TCCGTCACCTCCAATTTCAT+TGG - Chr1:98572683-98572702 None:intergenic 45.0%
TCTGATTGGGTAACGATCAG+AGG - Chr1:98571460-98571479 None:intergenic 45.0%
TCTTCCATTGGAGATGAGGA+TGG + Chr1:98571545-98571564 MsG0180005991.01.T01:CDS 45.0%
TTGATCTTCACTGCACCTCA+TGG + Chr1:98571322-98571341 MsG0180005991.01.T01:CDS 45.0%
TTGCAGGTGTACACTTGCAT+TGG - Chr1:98573787-98573806 None:intergenic 45.0%
TTGTATCGCCACCAAGAGAT+TGG + Chr1:98571570-98571589 MsG0180005991.01.T01:CDS 45.0%
TTGTATTCGTATACGGCAGG+AGG + Chr1:98575180-98575199 MsG0180005991.01.T01:intron 45.0%
TTTACGCCACGCCATTTCTA+AGG + Chr1:98571692-98571711 MsG0180005991.01.T01:CDS 45.0%
! ACTAGACTTGGAGGGTCTTT+TGG - Chr1:98575383-98575402 None:intergenic 45.0%
! AGAGTACCTTAGAAATGGCG+TGG - Chr1:98571701-98571720 None:intergenic 45.0%
! TTCTGACAGAGAGTATGACG+AGG + Chr1:98573687-98573706 MsG0180005991.01.T01:CDS 45.0%
! TTTCACAAGTCGGTTTAGGG+AGG - Chr1:98574901-98574920 None:intergenic 45.0%
! TTTTCGGATGACAACCGATC+TGG + Chr1:98572218-98572237 MsG0180005991.01.T01:CDS 45.0%
!! AACGGGCACTGTTTTCTTGT+TGG + Chr1:98573940-98573959 MsG0180005991.01.T01:intron 45.0%
!! GAAAAATCTGCTGGTAGTGG+TGG + Chr1:98575436-98575455 MsG0180005991.01.T01:CDS 45.0%
!! GATCCTTGTTGGTGGTATAG+AGG + Chr1:98573061-98573080 MsG0180005991.01.T01:CDS 45.0%
!! GTAGTTTTACCAACACCAGG+AGG - Chr1:98572395-98572414 None:intergenic 45.0%
!! GTTTCGGGTTGTGAATTCGA+CGG - Chr1:98571495-98571514 None:intergenic 45.0%
!! TGACGGACTTCAAATACTGG+AGG - Chr1:98573565-98573584 None:intergenic 45.0%
!!! ACTGTGGATGCTATTTTGGC+AGG + Chr1:98573424-98573443 MsG0180005991.01.T01:CDS 45.0%
!! ATAAATTTATTAAATATTGT+TGG + Chr1:98575689-98575708 MsG0180005991.01.T01:three_prime_UTR 5.0%
ATCAAGCTCCGCTGTGGTTT+CGG - Chr1:98571511-98571530 None:intergenic 50.0%
CAAGGGAAGAATCTGCAACC+TGG - Chr1:98575350-98575369 None:intergenic 50.0%
CAGGTACGGATCAAAACACC+AGG + Chr1:98575329-98575348 MsG0180005991.01.T01:CDS 50.0%
CAGTTGGCTGCTGAAAAGTC+AGG + Chr1:98575310-98575329 MsG0180005991.01.T01:CDS 50.0%
CATGATCTGGTTGAGGAAGG+AGG + Chr1:98572350-98572369 MsG0180005991.01.T01:CDS 50.0%
CCACTATTACTACGCGCTTC+AGG - Chr1:98572654-98572673 None:intergenic 50.0%
CCAGAAGGGAATCTAGCAAG+AGG - Chr1:98571633-98571652 None:intergenic 50.0%
CCTCTTGCTAGATTCCCTTC+TGG + Chr1:98571630-98571649 MsG0180005991.01.T01:CDS 50.0%
CCTGAAGCGCGTAGTAATAG+TGG + Chr1:98572651-98572670 MsG0180005991.01.T01:CDS 50.0%
CGACAGAATTCATGGATCCG+TGG + Chr1:98574087-98574106 MsG0180005991.01.T01:CDS 50.0%
GATGTTCCTCATGCAGGCAT+AGG + Chr1:98572703-98572722 MsG0180005991.01.T01:CDS 50.0%
GATTGTGCAGAGAGACTGCT+AGG + Chr1:98572611-98572630 MsG0180005991.01.T01:intron 50.0%
GCAATGGTACCACTGTCACT+AGG + Chr1:98575464-98575483 MsG0180005991.01.T01:CDS 50.0%
GCACCTCTATACCACCAACA+AGG - Chr1:98573067-98573086 None:intergenic 50.0%
GGCTGCTGAAAAGTCAGGTA+CGG + Chr1:98575315-98575334 MsG0180005991.01.T01:CDS 50.0%
GGTAACGATCAGAGGGTCTT+CGG - Chr1:98571452-98571471 None:intergenic 50.0%
GGTGGAATTTCGCAACACCA+CGG - Chr1:98574107-98574126 None:intergenic 50.0%
GGTTGCAGATTCTTCCCTTG+AGG + Chr1:98575350-98575369 MsG0180005991.01.T01:CDS 50.0%
TATCGCCACCAAGAGATTGG+TGG + Chr1:98571573-98571592 MsG0180005991.01.T01:CDS 50.0%
TCAGAGGGTCTTCGGATTTG+AGG - Chr1:98571444-98571463 None:intergenic 50.0%
TGAGTCCACCAATCTCTTGG+TGG - Chr1:98571581-98571600 None:intergenic 50.0%
TGGCGTGGCGTAAATCATCA+TGG - Chr1:98571686-98571705 None:intergenic 50.0%
TTCACAACCCGAAACCACAG+CGG + Chr1:98571500-98571519 MsG0180005991.01.T01:CDS 50.0%
TTCACTGCACCTCATGGCAA+AGG + Chr1:98571328-98571347 MsG0180005991.01.T01:CDS 50.0%
TTCGTATACGGCAGGAGGTT+CGG + Chr1:98575185-98575204 MsG0180005991.01.T01:intron 50.0%
TTGGACACAGACCACTCAAG+TGG + Chr1:98574812-98574831 MsG0180005991.01.T01:intron 50.0%
! CTTTGAAAGAAGGATGGGGC+CGG - Chr1:98573167-98573186 None:intergenic 50.0%
!! AAATCTGCTGGTAGTGGTGG+CGG + Chr1:98575439-98575458 MsG0180005991.01.T01:CDS 50.0%
!! ATTGGCCTTACTTGCCGTGT+TGG + Chr1:98572296-98572315 MsG0180005991.01.T01:CDS 50.0%
AAAGAAGGATGGGGCCGGAA+TGG - Chr1:98573162-98573181 None:intergenic 55.0%
CAGAGAGACTGCTAGGATGC+TGG + Chr1:98572618-98572637 MsG0180005991.01.T01:intron 55.0%
CTCGACCAACACGGCAAGTA+AGG - Chr1:98572304-98572323 None:intergenic 55.0%
GACGGAGATGTTCCTCATGC+AGG + Chr1:98572697-98572716 MsG0180005991.01.T01:CDS 55.0%
GAGTGTAACTCTCGGGGATG+AGG + Chr1:98573282-98573301 MsG0180005991.01.T01:intron 55.0%
GCGTCAATCTCTTCCAGCGA+TGG - Chr1:98574374-98574393 None:intergenic 55.0%
GCTGGAAGAGATTGACGCCT+TGG + Chr1:98574376-98574395 MsG0180005991.01.T01:CDS 55.0%
GGAAGAGATTGACGCCTTGG+AGG + Chr1:98574379-98574398 MsG0180005991.01.T01:CDS 55.0%
GGGATGAGGAAGCCAGGAAA+AGG + Chr1:98573296-98573315 MsG0180005991.01.T01:CDS 55.0%
GGGTTGTGAATTCGACGGTG+AGG - Chr1:98571490-98571509 None:intergenic 55.0%
GTCATTGGACCTCCTGGTGT+TGG + Chr1:98572383-98572402 MsG0180005991.01.T01:CDS 55.0%
TCAAGCTCCGCTGTGGTTTC+GGG - Chr1:98571510-98571529 None:intergenic 55.0%
TCCTCATGCAGGCATAGGCA+GGG + Chr1:98572708-98572727 MsG0180005991.01.T01:CDS 55.0%
TTCCTCATGCAGGCATAGGC+AGG + Chr1:98572707-98572726 MsG0180005991.01.T01:CDS 55.0%
! ATCCTCGGGCTAGAACCCTT+TGG + Chr1:98574278-98574297 MsG0180005991.01.T01:CDS 55.0%
! TACTTGCCGTGTTGGTCGAG+CGG + Chr1:98572304-98572323 MsG0180005991.01.T01:CDS 55.0%
! TCCAGCGATGGTTTGCGCTT+CGG - Chr1:98574362-98574381 None:intergenic 55.0%
AAGGATGGGGCCGGAATGGA+TGG - Chr1:98573158-98573177 None:intergenic 60.0%
ACCGAAGCGCAAACCATCGC+TGG + Chr1:98574358-98574377 MsG0180005991.01.T01:CDS 60.0%
AGTTCCACAGCCTCTCCACC+AGG - Chr1:98575235-98575254 None:intergenic 60.0%
CACTCACCGCTCGACCAACA+CGG - Chr1:98572313-98572332 None:intergenic 60.0%
GATTCCTGGTGGAGAGGCTG+TGG + Chr1:98575228-98575247 MsG0180005991.01.T01:CDS 60.0%
! AGCCAAAGGGTTCTAGCCCG+AGG - Chr1:98574283-98574302 None:intergenic 60.0%
ATGCAGGCATAGGCAGGGCG+AGG + Chr1:98572713-98572732 MsG0180005991.01.T01:CDS 65.0%
CTCTCGGGGATGAGGAAGCC+AGG + Chr1:98573290-98573309 MsG0180005991.01.T01:CDS 65.0%
GCCCTGCCTATGCCTGCATG+AGG - Chr1:98572712-98572731 None:intergenic 65.0%
! CGTGTTGGTCGAGCGGTGAG+TGG + Chr1:98572311-98572330 MsG0180005991.01.T01:CDS 65.0%
!! TCTGCTGGTAGTGGTGGCGG+CGG + Chr1:98575442-98575461 MsG0180005991.01.T01:CDS 65.0%
CAGGCATAGGCAGGGCGAGG+AGG + Chr1:98572716-98572735 MsG0180005991.01.T01:CDS 70.0%
!! GGTAGTGGTGGCGGCGGCAA+TGG + Chr1:98575448-98575467 MsG0180005991.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 98571226 98575710 98571226 ID=MsG0180005991.01;Name=MsG0180005991.01
Chr1 mRNA 98571226 98575710 98571226 ID=MsG0180005991.01.T01;Parent=MsG0180005991.01;Name=MsG0180005991.01.T01;_AED=0.42;_eAED=0.42;_QI=65|1|1|1|0.87|1|9|203|680
Chr1 exon 98571226 98571713 98571226 ID=MsG0180005991.01.T01:exon:19701;Parent=MsG0180005991.01.T01
Chr1 exon 98572209 98572423 98572209 ID=MsG0180005991.01.T01:exon:19702;Parent=MsG0180005991.01.T01
Chr1 exon 98572621 98572771 98572621 ID=MsG0180005991.01.T01:exon:19703;Parent=MsG0180005991.01.T01
Chr1 exon 98572891 98573082 98572891 ID=MsG0180005991.01.T01:exon:19704;Parent=MsG0180005991.01.T01
Chr1 exon 98573283 98573445 98573283 ID=MsG0180005991.01.T01:exon:19705;Parent=MsG0180005991.01.T01
Chr1 exon 98573557 98573807 98573557 ID=MsG0180005991.01.T01:exon:19706;Parent=MsG0180005991.01.T01
Chr1 exon 98573973 98574149 98573973 ID=MsG0180005991.01.T01:exon:19707;Parent=MsG0180005991.01.T01
Chr1 exon 98574239 98574400 98574239 ID=MsG0180005991.01.T01:exon:19708;Parent=MsG0180005991.01.T01
Chr1 exon 98575199 98575710 98575199 ID=MsG0180005991.01.T01:exon:19709;Parent=MsG0180005991.01.T01
Chr1 five_prime_UTR 98571226 98571290 98571226 ID=MsG0180005991.01.T01:five_prime_utr;Parent=MsG0180005991.01.T01
Chr1 CDS 98571291 98571713 98571291 ID=MsG0180005991.01.T01:cds;Parent=MsG0180005991.01.T01
Chr1 CDS 98572209 98572423 98572209 ID=MsG0180005991.01.T01:cds;Parent=MsG0180005991.01.T01
Chr1 CDS 98572621 98572771 98572621 ID=MsG0180005991.01.T01:cds;Parent=MsG0180005991.01.T01
Chr1 CDS 98572891 98573082 98572891 ID=MsG0180005991.01.T01:cds;Parent=MsG0180005991.01.T01
Chr1 CDS 98573283 98573445 98573283 ID=MsG0180005991.01.T01:cds;Parent=MsG0180005991.01.T01
Chr1 CDS 98573557 98573807 98573557 ID=MsG0180005991.01.T01:cds;Parent=MsG0180005991.01.T01
Chr1 CDS 98573973 98574149 98573973 ID=MsG0180005991.01.T01:cds;Parent=MsG0180005991.01.T01
Chr1 CDS 98574239 98574400 98574239 ID=MsG0180005991.01.T01:cds;Parent=MsG0180005991.01.T01
Chr1 CDS 98575199 98575507 98575199 ID=MsG0180005991.01.T01:cds;Parent=MsG0180005991.01.T01
Chr1 three_prime_UTR 98575508 98575710 98575508 ID=MsG0180005991.01.T01:three_prime_utr;Parent=MsG0180005991.01.T01
Gene Sequence

>MsG0180005991.01.T01

ATGAGAGCAATAAATTCGCATGTTGTCTTAATTGATCTTCACTGCACCTCATGGCAAAGGAACAACAATAAATTGTTTTCTTCATTCCATCGTTCATCAAGAAGACTTGATAAAGCGATTCAAGCTTCCAAATCATCTTCTTCAGCTTCTCCTCAAATCCGAAGACCCTCTGATCGTTACCCAATCAGAAATGGATCCTCACCGTCGAATTCACAACCCGAAACCACAGCGGAGCTTGATATGTTTCTGGAACTTCTTCCATTGGAGATGAGGATGGAATTGTATCGCCACCAAGAGATTGGTGGACTCATTGAAGTTGTTATGGATTTAGGAAGAAAACCTCTTGCTAGATTCCCTTCTGGTGATTGGGTCATTTCTCAACGACCCATTAACCATGATGATTTACGCCACGCCATTTCTAAGGTTGGTGATTTTTCGGATGACAACCGATCTGGTATTGATAGCTCATTGCATCGTATAAGTGCAATTCGGAATCGTCAGATGCAAATCATTGGCCTTACTTGCCGTGTTGGTCGAGCGGTGAGTGGCAGTGCTAAAATCATACATGATCTGGTTGAGGAAGGAGGTTCTATATTGGTCATTGGACCTCCTGGTGTTGGTAAAACTACCTTAATCAGAGAGACTGCTAGGATGCTGGCAGATGAGTTCCTGAAGCGCGTAGTAATAGTGGATACATCCAATGAAATTGGAGGTGACGGAGATGTTCCTCATGCAGGCATAGGCAGGGCGAGGAGGATGCAAGTTCCAAATGTGAATATGCAGCATAGTATTATGATTGAAGCAGTTGAAAATCATATGCCTGAAACCATTATAATTGATGAAATTGGAACAGAACTTGAAGCATTAGCAGCAAGTACCATTGCTCAAAGAGGAGTTCAATTGGTTGGAACAGCACATGGAACAACCATTGAAAGCATAATGAAGAATCCTTATCTTCAGATCCTTGTTGGTGGTATAGAGAGTGTAACTCTCGGGGATGAGGAAGCCAGGAAAAGGAAAGTGCAAAAGACAATTCTAGAAAGGAAAGGACCACCTACATTTACGTGTGCTGTTGAGATGATATCCAAAACTGAATGTCGTGTTCATCATAGGTTAGATTCAACTGTGGATGCTATTTTGGCAGGAAAACCTCCAGTATTTGAAGTCCGTCATTGGGATGATTTTTCCAATGATTTGGTGAAGCATGCTCCAATACCTGAAATAAGCCATGAAGAAACATCGGATTTAAATTTAACTAACACTAATATCACAAGTTCTGACAGAGAGTATGACGAGGATGATACATACTACTATCCCACTCGATCCATGAAATGGAGTGATAATAGTGGATCTGTGATCAAGAGGAGTTCACCAATGCAAGTGTACACCTGCAAGATTCTTGAAGCTGATCTAGTACGAGTAGCAAAAGTGATGGGGTTTGAAGATTTAATAGAAGTAACTGATGACATTGGAACTGCTGATGCAATTCTTGCATCCGGTTCTGAGTTACGACAGAATTCATGGATCCGTGGTGTTGCGAAATTCCACCAGTTACCTGTATTTGTTCTCAAGTCCAATACCATGGCAAAAATGGTAAAGGCAGTAAAAATGATCCTCGGGCTAGAACCCTTTGGCTCCACGATAAAGAAGCCATCAAATGAGTCTCCAGATATTGAAATTGACGATGACGAACCGAAGCGCAAACCATCGCTGGAAGAGATTGACGCCTTGGAGGAGGTTCGGCTAGCGATAGAGTACATAGTGATTCCTGGTGGAGAGGCTGTGGAACTTCTTCCAAGACGTTCTGAAATTATTGACCGGCAGATTGAACTTGTGCAAAGCTATCAGTTGGCTGCTGAAAAGTCAGGTACGGATCAAAACACCAGGTTGCAGATTCTTCCCTTGAGGCTAAGTACCAAAAGACCCTCCAAGTCTAGTTCTGTTTCCTGCAAGAAAAGAAGTTTTACCTCAGAAAAATCTGCTGGTAGTGGTGGCGGCGGCAATGGTACCACTGTCACTAGGCTTCCTATTTTACCTGAATGA

Protein sequence

>MsG0180005991.01.T01

MRAINSHVVLIDLHCTSWQRNNNKLFSSFHRSSRRLDKAIQASKSSSSASPQIRRPSDRYPIRNGSSPSNSQPETTAELDMFLELLPLEMRMELYRHQEIGGLIEVVMDLGRKPLARFPSGDWVISQRPINHDDLRHAISKVGDFSDDNRSGIDSSLHRISAIRNRQMQIIGLTCRVGRAVSGSAKIIHDLVEEGGSILVIGPPGVGKTTLIRETARMLADEFLKRVVIVDTSNEIGGDGDVPHAGIGRARRMQVPNVNMQHSIMIEAVENHMPETIIIDEIGTELEALAASTIAQRGVQLVGTAHGTTIESIMKNPYLQILVGGIESVTLGDEEARKRKVQKTILERKGPPTFTCAVEMISKTECRVHHRLDSTVDAILAGKPPVFEVRHWDDFSNDLVKHAPIPEISHEETSDLNLTNTNITSSDREYDEDDTYYYPTRSMKWSDNSGSVIKRSSPMQVYTCKILEADLVRVAKVMGFEDLIEVTDDIGTADAILASGSELRQNSWIRGVAKFHQLPVFVLKSNTMAKMVKAVKMILGLEPFGSTIKKPSNESPDIEIDDDEPKRKPSLEEIDALEEVRLAIEYIVIPGGEAVELLPRRSEIIDRQIELVQSYQLAAEKSGTDQNTRLQILPLRLSTKRPSKSSSVSCKKRSFTSEKSAGSGGGGNGTTVTRLPILPE*