Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046556.01.T01 | XP_013458030.1 | 96.795 | 156 | 4 | 1 | 1 | 155 | 1 | 156 | 1.97E-103 | 316 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046556.01.T01 | Q93ZR8 | 66.667 | 117 | 32 | 2 | 40 | 155 | 36 | 146 | 3.80E-51 | 173 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046556.01.T01 | A0A072URS3 | 96.795 | 156 | 4 | 1 | 1 | 155 | 1 | 156 | 9.39e-104 | 316 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048058.01 | MsG0880046556.01 | 0.819913 | 9.047115e-53 | 7.055306e-50 |
| MsG0180000146.01 | MsG0880046556.01 | 0.802806 | 4.709447e-49 | 2.328809e-46 |
| MsG0180001173.01 | MsG0880046556.01 | 0.825698 | 4.066743e-54 | 3.734455e-51 |
| MsG0880045841.01 | MsG0880046556.01 | 0.804099 | 2.541853e-49 | 1.299222e-46 |
| MsG0180004598.01 | MsG0880046556.01 | 0.800589 | 1.342905e-48 | 6.276884e-46 |
| MsG0180004989.01 | MsG0880046556.01 | 0.829084 | 6.274275e-55 | 6.354763e-52 |
| MsG0180005530.01 | MsG0880046556.01 | 0.809590 | 1.755229e-50 | 1.034770e-47 |
| MsG0180005985.01 | MsG0880046556.01 | 0.820410 | 6.963024e-53 | 5.505447e-50 |
| MsG0780040687.01 | MsG0880046556.01 | 0.814916 | 1.207181e-51 | 8.204822e-49 |
| MsG0880042552.01 | MsG0880046556.01 | 0.821067 | 4.915808e-53 | 3.958665e-50 |
| MsG0880042760.01 | MsG0880046556.01 | 0.807072 | 6.042102e-50 | 3.333401e-47 |
| MsG0880043750.01 | MsG0880046556.01 | 0.811047 | 8.510596e-51 | 5.214259e-48 |
| MsG0280010735.01 | MsG0880046556.01 | 0.800381 | 1.480001e-48 | 6.881591e-46 |
| MsG0380013548.01 | MsG0880046556.01 | 0.801034 | 1.089455e-48 | 5.150323e-46 |
| MsG0480021216.01 | MsG0880046556.01 | 0.801847 | 7.421032e-49 | 3.580998e-46 |
| MsG0480022228.01 | MsG0880046556.01 | 0.816919 | 4.314913e-52 | 3.097963e-49 |
| MsG0480022719.01 | MsG0880046556.01 | 0.831186 | 1.925523e-55 | 2.073895e-52 |
| MsG0480023053.01 | MsG0880046556.01 | 0.849897 | 2.407463e-60 | 4.633016e-57 |
| MsG0480023620.01 | MsG0880046556.01 | 0.801135 | 1.038856e-48 | 4.923631e-46 |
| MsG0380016589.01 | MsG0880046556.01 | 0.814309 | 1.645110e-51 | 1.100065e-48 |
| MsG0480018256.01 | MsG0880046556.01 | 0.825157 | 5.463417e-54 | 4.940470e-51 |
| MsG0280007790.01 | MsG0880046556.01 | 0.815743 | 7.906298e-52 | 5.497171e-49 |
| MsG0280008614.01 | MsG0880046556.01 | 0.819584 | 1.075488e-52 | 8.310414e-50 |
| MsG0780039905.01 | MsG0880046556.01 | 0.803835 | 2.884025e-49 | 1.464178e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046556.01.T01 | MTR_4g110030 | 96.795 | 156 | 4 | 1 | 1 | 155 | 1 | 156 | 2.38e-107 | 316 |
| MsG0880046556.01.T01 | MTR_2g059350 | 76.522 | 115 | 19 | 1 | 41 | 155 | 49 | 155 | 9.37e-57 | 185 |
| MsG0880046556.01.T01 | MTR_6g016015 | 68.966 | 116 | 33 | 1 | 40 | 155 | 43 | 155 | 2.01e-50 | 169 |
| MsG0880046556.01.T01 | MTR_4g082310 | 52.137 | 117 | 50 | 2 | 40 | 155 | 26 | 137 | 4.57e-37 | 133 |
| MsG0880046556.01.T01 | MTR_5g042200 | 47.458 | 118 | 57 | 3 | 42 | 155 | 9 | 125 | 8.38e-32 | 119 |
| MsG0880046556.01.T01 | MTR_1g052225 | 56.338 | 71 | 4 | 1 | 112 | 155 | 18 | 88 | 3.84e-16 | 70.9 |
| MsG0880046556.01.T01 | MTR_3g099480 | 73.171 | 41 | 11 | 0 | 115 | 155 | 140 | 180 | 1.15e-14 | 70.9 |
| MsG0880046556.01.T01 | MTR_5g064620 | 66.667 | 42 | 14 | 0 | 114 | 155 | 110 | 151 | 4.03e-14 | 68.9 |
| MsG0880046556.01.T01 | MTR_4g019210 | 65.854 | 41 | 14 | 0 | 114 | 154 | 231 | 271 | 2.74e-13 | 66.6 |
| MsG0880046556.01.T01 | MTR_1g102030 | 60.784 | 51 | 15 | 2 | 104 | 154 | 82 | 127 | 3.08e-12 | 63.5 |
| MsG0880046556.01.T01 | MTR_4g125460 | 60.976 | 41 | 16 | 0 | 114 | 154 | 88 | 128 | 4.94e-12 | 63.2 |
| MsG0880046556.01.T01 | MTR_4g125460 | 60.976 | 41 | 16 | 0 | 114 | 154 | 227 | 267 | 5.22e-12 | 63.2 |
| MsG0880046556.01.T01 | MTR_1g101985 | 60.784 | 51 | 15 | 2 | 104 | 154 | 82 | 127 | 6.98e-12 | 60.8 |
| MsG0880046556.01.T01 | MTR_5g032100 | 35.165 | 91 | 38 | 3 | 64 | 154 | 56 | 125 | 2.55e-11 | 60.8 |
| MsG0880046556.01.T01 | MTR_5g012770 | 55.319 | 47 | 21 | 0 | 108 | 154 | 117 | 163 | 7.36e-11 | 59.7 |
| MsG0880046556.01.T01 | MTR_2g016470 | 55.556 | 45 | 20 | 0 | 109 | 153 | 183 | 227 | 9.01e-11 | 59.3 |
| MsG0880046556.01.T01 | MTR_4g100810 | 55.319 | 47 | 21 | 0 | 108 | 154 | 101 | 147 | 9.11e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046556.01.T01 | AT3G02250 | 66.667 | 117 | 32 | 2 | 40 | 155 | 36 | 146 | 3.88e-52 | 173 |
| MsG0880046556.01.T01 | AT5G15740 | 63.934 | 122 | 37 | 2 | 35 | 155 | 31 | 146 | 2.54e-49 | 166 |
| MsG0880046556.01.T01 | AT1G14020 | 42.982 | 114 | 56 | 1 | 42 | 155 | 27 | 131 | 4.48e-28 | 108 |
| MsG0880046556.01.T01 | AT2G03280 | 44.828 | 116 | 49 | 4 | 40 | 155 | 28 | 128 | 2.82e-24 | 98.2 |
| MsG0880046556.01.T01 | AT2G03280 | 44.828 | 116 | 49 | 4 | 40 | 155 | 28 | 128 | 3.08e-24 | 97.8 |
| MsG0880046556.01.T01 | AT1G22460 | 61.818 | 55 | 17 | 1 | 105 | 155 | 146 | 200 | 2.76e-15 | 72.4 |
| MsG0880046556.01.T01 | AT5G01100 | 57.692 | 52 | 20 | 1 | 103 | 154 | 206 | 255 | 1.08e-12 | 65.1 |
| MsG0880046556.01.T01 | AT1G04910 | 53.571 | 56 | 22 | 1 | 103 | 154 | 72 | 127 | 2.01e-12 | 64.3 |
| MsG0880046556.01.T01 | AT3G54100 | 63.415 | 41 | 15 | 0 | 114 | 154 | 221 | 261 | 3.70e-12 | 63.5 |
| MsG0880046556.01.T01 | AT2G37980 | 64.286 | 42 | 15 | 0 | 114 | 155 | 225 | 266 | 1.58e-11 | 61.6 |
| MsG0880046556.01.T01 | AT5G35570 | 61.538 | 39 | 15 | 0 | 116 | 154 | 252 | 290 | 1.69e-11 | 61.6 |
Find 62 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCTACATTTAGGGTTTA+TGG | 0.096244 | 8:+74863757 | MsG0880046556.01.T01:five_prime_UTR |
| CTTTAATTAAATCTACATTT+AGG | 0.125271 | 8:+74863749 | MsG0880046556.01.T01:five_prime_UTR |
| TGAACTTGATAAAATCCTTT+TGG | 0.242971 | 8:+74865126 | MsG0880046556.01.T01:CDS |
| CTAGCTTCGGGTTCGGGTTT+GGG | 0.246364 | 8:+74863886 | MsG0880046556.01.T01:CDS |
| TCGGGTTTGGGTTCGGGTTC+AGG | 0.247534 | 8:+74863898 | MsG0880046556.01.T01:CDS |
| TCGGGTTCGGGTTTGGGTTC+GGG | 0.259783 | 8:+74863892 | MsG0880046556.01.T01:CDS |
| TTTAATTAAATCTACATTTA+GGG | 0.261089 | 8:+74863750 | MsG0880046556.01.T01:five_prime_UTR |
| TAACTACAAGTGGCAAGATT+TGG | 0.276036 | 8:+74863831 | MsG0880046556.01.T01:CDS |
| TTCGGGTTCGGGTTTGGGTT+CGG | 0.285492 | 8:+74863891 | MsG0880046556.01.T01:CDS |
| GTGGGGTCCTCGAGTTCTTA+AGG | 0.294055 | 8:+74864011 | MsG0880046556.01.T01:CDS |
| GAGAGACTAGCTTCGGGTTC+GGG | 0.295532 | 8:+74863880 | MsG0880046556.01.T01:CDS |
| ACTAGCTTCGGGTTCGGGTT+TGG | 0.297436 | 8:+74863885 | MsG0880046556.01.T01:CDS |
| AAGCGTGACATTTAAATATC+TGG | 0.308808 | 8:-74865095 | None:intergenic |
| AGGTGAAGTGTGAGAGAAAA+TGG | 0.325545 | 8:-74863497 | None:intergenic |
| TGGGGTCCTCGAGTTCTTAA+GGG | 0.351334 | 8:+74864012 | MsG0880046556.01.T01:CDS |
| AACTACAAGTGGCAAGATTT+GGG | 0.370307 | 8:+74863832 | MsG0880046556.01.T01:CDS |
| AGAGAGACTAGCTTCGGGTT+CGG | 0.397228 | 8:+74863879 | MsG0880046556.01.T01:CDS |
| TGCATCAAATTCTAGAGCTT+TGG | 0.405053 | 8:+74864068 | MsG0880046556.01.T01:CDS |
| GGGAAATGTTGTTGAATTTG+AGG | 0.413426 | 8:-74863526 | None:intergenic |
| TAACTCTTGGGAGGAAGAAC+TGG | 0.422934 | 8:-74864117 | None:intergenic |
| ATAGTTCAATTAACAGCTAT+AGG | 0.432577 | 8:+74863982 | MsG0880046556.01.T01:CDS |
| ATTCTTCCTTCTTCGCTCTC+CGG | 0.433042 | 8:+74863448 | MsG0880046556.01.T01:five_prime_UTR |
| TTGGGTTCGGGTTCAGGAAG+AGG | 0.445908 | 8:+74863904 | MsG0880046556.01.T01:CDS |
| GTGGCAAGATTTGGGTTGGA+TGG | 0.446241 | 8:+74863840 | MsG0880046556.01.T01:CDS |
| ACTGTATTTCTTGTCTGCAT+TGG | 0.449364 | 8:+74863643 | MsG0880046556.01.T01:five_prime_UTR |
| AACAGCTATAGGTGATTTGT+GGG | 0.454993 | 8:+74863993 | MsG0880046556.01.T01:CDS |
| TTTGGGTTGGATGGGTTTGA+AGG | 0.463262 | 8:+74863849 | MsG0880046556.01.T01:CDS |
| TAACAGCTATAGGTGATTTG+TGG | 0.466819 | 8:+74863992 | MsG0880046556.01.T01:CDS |
| TACTTGATGGTTTCGTGCAA+TGG | 0.469164 | 8:+74864668 | MsG0880046556.01.T01:CDS |
| AGAGAAAATGGAAGGTGCTC+CGG | 0.489352 | 8:-74863485 | None:intergenic |
| TGGCAAGATTTGGGTTGGAT+GGG | 0.493030 | 8:+74863841 | MsG0880046556.01.T01:CDS |
| TGGTGGCCGGAGAGCGAAGA+AGG | 0.499510 | 8:-74863454 | None:intergenic |
| TCACCTAGGATCAGCCCAAA+AGG | 0.506855 | 8:-74865141 | None:intergenic |
| GTCCTCGAGTTCTTAAGGGT+TGG | 0.518145 | 8:+74864016 | MsG0880046556.01.T01:CDS |
| ACAAGTGGCAAGATTTGGGT+TGG | 0.524017 | 8:+74863836 | MsG0880046556.01.T01:CDS |
| CAACTACAACGGTGATATTG+TGG | 0.525187 | 8:+74863953 | MsG0880046556.01.T01:CDS |
| TGTTGAATTTGAGGAAATGA+AGG | 0.526671 | 8:-74863517 | None:intergenic |
| TCTTTCCTCACCACCTCCAT+CGG | 0.538194 | 8:+74863403 | MsG0880046556.01.T01:five_prime_UTR |
| ATTAGTTGATAACTTCGATC+CGG | 0.538834 | 8:+74863692 | MsG0880046556.01.T01:five_prime_UTR |
| AATATTATAGCCGATGGAGG+TGG | 0.565451 | 8:-74863413 | None:intergenic |
| GACATTTAAATATCTGGCAA+TGG | 0.566411 | 8:-74865089 | None:intergenic |
| TCCGGCCACCACATTCTCGC+CGG | 0.567955 | 8:+74863466 | MsG0880046556.01.T01:five_prime_UTR |
| TGAATGAATATTATAGCCGA+TGG | 0.570106 | 8:-74863419 | None:intergenic |
| TCCGGCGAGAATGTGGTGGC+CGG | 0.576218 | 8:-74863467 | None:intergenic |
| GTAAAAGCAATAACTACAAG+TGG | 0.579123 | 8:+74863821 | MsG0880046556.01.T01:CDS |
| TTGATGGTTTCGTGCAATGG+AGG | 0.581174 | 8:+74864671 | MsG0880046556.01.T01:CDS |
| CTCTTGGGAGGAAGAACTGG+TGG | 0.610292 | 8:-74864114 | None:intergenic |
| GTTGTTCAACGAAACGACAC+CGG | 0.622229 | 8:-74863711 | None:intergenic |
| GTGCTCCGGCGAGAATGTGG+TGG | 0.627301 | 8:-74863471 | None:intergenic |
| AAAAGGTACTAACTCTTGGG+AGG | 0.632505 | 8:-74864126 | None:intergenic |
| GGCCAACCCTTAAGAACTCG+AGG | 0.641899 | 8:-74864018 | None:intergenic |
| TATAGCCGATGGAGGTGGTG+AGG | 0.645162 | 8:-74863408 | None:intergenic |
| AAGGTGCTCCGGCGAGAATG+TGG | 0.657081 | 8:-74863474 | None:intergenic |
| ATGAATATTATAGCCGATGG+AGG | 0.657327 | 8:-74863416 | None:intergenic |
| GAAGTGTGAGAGAAAATGGA+AGG | 0.684028 | 8:-74863493 | None:intergenic |
| ATTGAATCAAATGAGAGCAG+CGG | 0.686905 | 8:+74864694 | MsG0880046556.01.T01:CDS |
| GAAGAGGTAGAATGAAACTG+TGG | 0.693779 | 8:+74863920 | MsG0880046556.01.T01:CDS |
| GGTGTCGTTTCGTTGAACAA+CGG | 0.700816 | 8:+74863713 | MsG0880046556.01.T01:five_prime_UTR |
| AACTGTGCAGATATGTGACA+TGG | 0.717484 | 8:+74865063 | MsG0880046556.01.T01:intron |
| GATGATACGTGCAACTACAA+CGG | 0.721489 | 8:+74863942 | MsG0880046556.01.T01:CDS |
| ACAGCTATAGGTGATTTGTG+GGG | 0.725015 | 8:+74863994 | MsG0880046556.01.T01:CDS |
| TCTACATGTGTAAAACACGA+AGG | 0.738734 | 8:-74864039 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATTAAATCTACATTTA+GGG | + | Chr8:74863750-74863769 | MsG0880046556.01.T01:five_prime_UTR | 10.0% |
| !! | AAATAGCAATAAAACAAATT+AGG | - | Chr8:74864181-74864200 | None:intergenic | 15.0% |
| !! | ACTTAATTAGAAAGTAAAAA+AGG | - | Chr8:74864146-74864165 | None:intergenic | 15.0% |
| !! | CTTTAATTAAATCTACATTT+AGG | + | Chr8:74863749-74863768 | MsG0880046556.01.T01:five_prime_UTR | 15.0% |
| !!! | GTTATTTTTTATATTGAGGA+GGG | - | Chr8:74863549-74863568 | None:intergenic | 20.0% |
| ! | ATAGTTCAATTAACAGCTAT+AGG | + | Chr8:74863982-74864001 | MsG0880046556.01.T01:CDS | 25.0% |
| ! | ATCAGGAGTTATAAAACAAT+GGG | + | Chr8:74864325-74864344 | MsG0880046556.01.T01:intron | 25.0% |
| ! | CAGGAGTTTATAAAAACAAT+GGG | + | Chr8:74864645-74864664 | MsG0880046556.01.T01:intron | 25.0% |
| ! | TAAATAATCAGAAACGCAAA+CGG | - | Chr8:74865039-74865058 | None:intergenic | 25.0% |
| ! | TATCAGGAGTTATAAAACAA+TGG | + | Chr8:74864324-74864343 | MsG0880046556.01.T01:intron | 25.0% |
| ! | TCAGGAGTTTATAAAAACAA+TGG | + | Chr8:74864644-74864663 | MsG0880046556.01.T01:intron | 25.0% |
| ! | TCATAAATCAGAATTAGACA+AGG | - | Chr8:74864262-74864281 | None:intergenic | 25.0% |
| !! | AAAAGGATTTTATCAAGTTC+AGG | - | Chr8:74865127-74865146 | None:intergenic | 25.0% |
| !! | AAATCTACATTTAGGGTTTA+TGG | + | Chr8:74863757-74863776 | MsG0880046556.01.T01:five_prime_UTR | 25.0% |
| !! | GAACTTGATAAAATCCTTTT+GGG | + | Chr8:74865127-74865146 | MsG0880046556.01.T01:CDS | 25.0% |
| !! | TGAACTTGATAAAATCCTTT+TGG | + | Chr8:74865126-74865145 | MsG0880046556.01.T01:CDS | 25.0% |
| !!! | CGGTTAATTTTTATTTGTTG+CGG | + | Chr8:74863573-74863592 | MsG0880046556.01.T01:five_prime_UTR | 25.0% |
| !!! | GGTTATTTTTTATATTGAGG+AGG | - | Chr8:74863550-74863569 | None:intergenic | 25.0% |
| !!! | TAAAAAAGGTACTAACTCTT+GGG | - | Chr8:74864132-74864151 | None:intergenic | 25.0% |
| AAGCGTGACATTTAAATATC+TGG | - | Chr8:74865098-74865117 | None:intergenic | 30.0% | |
| ACAAATAAAAATTAACCGCG+CGG | - | Chr8:74863571-74863590 | None:intergenic | 30.0% | |
| ACCTTGTCTAATTCTGTTTA+TGG | + | Chr8:74864578-74864597 | MsG0880046556.01.T01:intron | 30.0% | |
| ATAAAACAATGGGTACTTGA+TGG | + | Chr8:74864335-74864354 | MsG0880046556.01.T01:intron | 30.0% | |
| CAATATAAAAAATAACCGCG+CGG | + | Chr8:74863553-74863572 | MsG0880046556.01.T01:five_prime_UTR | 30.0% | |
| GACATTTAAATATCTGGCAA+TGG | - | Chr8:74865092-74865111 | None:intergenic | 30.0% | |
| GTAAAAGCAATAACTACAAG+TGG | + | Chr8:74863821-74863840 | MsG0880046556.01.T01:CDS | 30.0% | |
| TAAAAACAATGGGTACTTGA+TGG | + | Chr8:74864655-74864674 | MsG0880046556.01.T01:CDS | 30.0% | |
| TATTTAGTCCTCAAGATTGT+AGG | - | Chr8:74864939-74864958 | None:intergenic | 30.0% | |
| TCCATAAACAGAATTAGACA+AGG | - | Chr8:74864582-74864601 | None:intergenic | 30.0% | |
| TGAATGAATATTATAGCCGA+TGG | - | Chr8:74863422-74863441 | None:intergenic | 30.0% | |
| TGTTGAATTTGAGGAAATGA+AGG | - | Chr8:74863520-74863539 | None:intergenic | 30.0% | |
| TTATATAACCCCTACATTTC+AGG | - | Chr8:74864451-74864470 | None:intergenic | 30.0% | |
| !! | ATTAGTTGATAACTTCGATC+CGG | + | Chr8:74863692-74863711 | MsG0880046556.01.T01:five_prime_UTR | 30.0% |
| !! | ATTTTAGTCCTGAAATGTAG+GGG | + | Chr8:74864440-74864459 | MsG0880046556.01.T01:intron | 30.0% |
| !! | GATTTTAGTCCTGAAATGTA+GGG | + | Chr8:74864439-74864458 | MsG0880046556.01.T01:intron | 30.0% |
| !! | GTAAAAAAGGTACTAACTCT+TGG | - | Chr8:74864133-74864152 | None:intergenic | 30.0% |
| !! | TAGTTATTGCTTTTACTCTC+TGG | - | Chr8:74863817-74863836 | None:intergenic | 30.0% |
| !! | TGATTTTAGTCCTGAAATGT+AGG | + | Chr8:74864438-74864457 | MsG0880046556.01.T01:intron | 30.0% |
| !!! | CGCGGTTATTTTTTATATTG+AGG | - | Chr8:74863553-74863572 | None:intergenic | 30.0% |
| AACTACAAGTGGCAAGATTT+GGG | + | Chr8:74863832-74863851 | MsG0880046556.01.T01:CDS | 35.0% | |
| ACTGTATTTCTTGTCTGCAT+TGG | + | Chr8:74863643-74863662 | MsG0880046556.01.T01:five_prime_UTR | 35.0% | |
| ATGAATATTATAGCCGATGG+AGG | - | Chr8:74863419-74863438 | None:intergenic | 35.0% | |
| ATTGAATCAAATGAGAGCAG+CGG | + | Chr8:74864374-74864393 | MsG0880046556.01.T01:intron | 35.0% | |
| GGGAAATGTTGTTGAATTTG+AGG | - | Chr8:74863529-74863548 | None:intergenic | 35.0% | |
| TAACAGCTATAGGTGATTTG+TGG | + | Chr8:74863992-74864011 | MsG0880046556.01.T01:CDS | 35.0% | |
| TAACTACAAGTGGCAAGATT+TGG | + | Chr8:74863831-74863850 | MsG0880046556.01.T01:CDS | 35.0% | |
| TAGTTGCACAATGACACAAA+CGG | - | Chr8:74864998-74865017 | None:intergenic | 35.0% | |
| TCTACATGTGTAAAACACGA+AGG | - | Chr8:74864042-74864061 | None:intergenic | 35.0% | |
| TGTTACGTTGTTGTGATATC+AGG | + | Chr8:74864308-74864327 | MsG0880046556.01.T01:intron | 35.0% | |
| ! | AACAGCTATAGGTGATTTGT+GGG | + | Chr8:74863993-74864012 | MsG0880046556.01.T01:CDS | 35.0% |
| !! | ACAAAAAGAGAGACTAGCTT+CGG | + | Chr8:74863873-74863892 | MsG0880046556.01.T01:CDS | 35.0% |
| !! | TGCATCAAATTCTAGAGCTT+TGG | + | Chr8:74864068-74864087 | MsG0880046556.01.T01:CDS | 35.0% |
| AAAATCCTCCTTGATCCTGT+TGG | + | Chr8:74864485-74864504 | MsG0880046556.01.T01:intron | 40.0% | |
| AACTGTGCAGATATGTGACA+TGG | + | Chr8:74865063-74865082 | MsG0880046556.01.T01:intron | 40.0% | |
| AATATTATAGCCGATGGAGG+TGG | - | Chr8:74863416-74863435 | None:intergenic | 40.0% | |
| AGGTGAAGTGTGAGAGAAAA+TGG | - | Chr8:74863500-74863519 | None:intergenic | 40.0% | |
| AGTTGCACAATGACACAAAC+GGG | - | Chr8:74864997-74865016 | None:intergenic | 40.0% | |
| ATGTCTGACCTACAATCTTG+AGG | + | Chr8:74864928-74864947 | MsG0880046556.01.T01:intron | 40.0% | |
| CAACTACAACGGTGATATTG+TGG | + | Chr8:74863953-74863972 | MsG0880046556.01.T01:CDS | 40.0% | |
| CCATTGAGATCATCTCAAAG+TGG | + | Chr8:74864526-74864545 | MsG0880046556.01.T01:intron | 40.0% | |
| GAAGAGGTAGAATGAAACTG+TGG | + | Chr8:74863920-74863939 | MsG0880046556.01.T01:CDS | 40.0% | |
| GAAGTGTGAGAGAAAATGGA+AGG | - | Chr8:74863496-74863515 | None:intergenic | 40.0% | |
| GATGATACGTGCAACTACAA+CGG | + | Chr8:74863942-74863961 | MsG0880046556.01.T01:CDS | 40.0% | |
| TAGGTCAGACATTCAGTATC+TGG | - | Chr8:74864920-74864939 | None:intergenic | 40.0% | |
| ! | ACAGCTATAGGTGATTTGTG+GGG | + | Chr8:74863994-74864013 | MsG0880046556.01.T01:CDS | 40.0% |
| ! | TACTTGATGGTTTCGTGCAA+TGG | + | Chr8:74864348-74864367 | MsG0880046556.01.T01:intron | 40.0% |
| !! | AAAAGGTACTAACTCTTGGG+AGG | - | Chr8:74864129-74864148 | None:intergenic | 40.0% |
| !! | CAAAAAGAGAGACTAGCTTC+GGG | + | Chr8:74863874-74863893 | MsG0880046556.01.T01:CDS | 40.0% |
| !! | CCACTTTGAGATGATCTCAA+TGG | - | Chr8:74864850-74864869 | None:intergenic | 40.0% |
| !! | GCACTTTGAGATGATCTCAA+TGG | - | Chr8:74864529-74864548 | None:intergenic | 40.0% |
| !! | TCTCAATGGACTAACTTGAC+CGG | - | Chr8:74864515-74864534 | None:intergenic | 40.0% |
| AACGCAAACGGAAACAGTAC+AGG | - | Chr8:74865027-74865046 | None:intergenic | 45.0% | |
| AATCAAATGAGAGCAGCGGT+GGG | + | Chr8:74864378-74864397 | MsG0880046556.01.T01:intron | 45.0% | |
| ACAAGTGGCAAGATTTGGGT+TGG | + | Chr8:74863836-74863855 | MsG0880046556.01.T01:CDS | 45.0% | |
| ATTCTTCCTTCTTCGCTCTC+CGG | + | Chr8:74863448-74863467 | MsG0880046556.01.T01:five_prime_UTR | 45.0% | |
| GTTGTTCAACGAAACGACAC+CGG | - | Chr8:74863714-74863733 | None:intergenic | 45.0% | |
| TAACTCTTGGGAGGAAGAAC+TGG | - | Chr8:74864120-74864139 | None:intergenic | 45.0% | |
| ! | TTGATGGTTTCGTGCAATGG+AGG | + | Chr8:74864351-74864370 | MsG0880046556.01.T01:intron | 45.0% |
| !! | AGAGAAAATGGAAGGTGCTC+CGG | - | Chr8:74863488-74863507 | None:intergenic | 45.0% |
| !! | GGTGTCGTTTCGTTGAACAA+CGG | + | Chr8:74863713-74863732 | MsG0880046556.01.T01:five_prime_UTR | 45.0% |
| !! | TGGCAAGATTTGGGTTGGAT+GGG | + | Chr8:74863841-74863860 | MsG0880046556.01.T01:CDS | 45.0% |
| !! | TTTGGGTTGGATGGGTTTGA+AGG | + | Chr8:74863849-74863868 | MsG0880046556.01.T01:CDS | 45.0% |
| AACTTGACCGGCATACCAAC+AGG | - | Chr8:74864503-74864522 | None:intergenic | 50.0% | |
| CCTTGATCCTGTTGGTATGC+CGG | + | Chr8:74864493-74864512 | MsG0880046556.01.T01:intron | 50.0% | |
| GAATCAAATGAGAGCAGCGG+TGG | + | Chr8:74864377-74864396 | MsG0880046556.01.T01:intron | 50.0% | |
| GCATACCAACAGGATCAAGG+AGG | - | Chr8:74864493-74864512 | None:intergenic | 50.0% | |
| GTCCTCGAGTTCTTAAGGGT+TGG | + | Chr8:74864016-74864035 | MsG0880046556.01.T01:CDS | 50.0% | |
| TCCTCCTTGATCCTGTTGGT+AGG | + | Chr8:74864489-74864508 | MsG0880046556.01.T01:intron | 50.0% | |
| TCTTTCCTCACCACCTCCAT+CGG | + | Chr8:74863403-74863422 | MsG0880046556.01.T01:five_prime_UTR | 50.0% | |
| TGGGGTCCTCGAGTTCTTAA+GGG | + | Chr8:74864012-74864031 | MsG0880046556.01.T01:CDS | 50.0% | |
| !! | AGAGAGACTAGCTTCGGGTT+CGG | + | Chr8:74863879-74863898 | MsG0880046556.01.T01:CDS | 50.0% |
| !! | GTGGCAAGATTTGGGTTGGA+TGG | + | Chr8:74863840-74863859 | MsG0880046556.01.T01:CDS | 50.0% |
| AACTTGACCGGCCTACCAAC+AGG | - | Chr8:74864824-74864843 | None:intergenic | 55.0% | |
| CCGGCATACCAACAGGATCA+AGG | - | Chr8:74864496-74864515 | None:intergenic | 55.0% | |
| CTCTTGGGAGGAAGAACTGG+TGG | - | Chr8:74864117-74864136 | None:intergenic | 55.0% | |
| GCCTACCAACAGGATCAAGG+AGG | - | Chr8:74864814-74864833 | None:intergenic | 55.0% | |
| GGCCAACCCTTAAGAACTCG+AGG | - | Chr8:74864021-74864040 | None:intergenic | 55.0% | |
| GTGGGGTCCTCGAGTTCTTA+AGG | + | Chr8:74864011-74864030 | MsG0880046556.01.T01:CDS | 55.0% | |
| TATAGCCGATGGAGGTGGTG+AGG | - | Chr8:74863411-74863430 | None:intergenic | 55.0% | |
| ! | ACTAGCTTCGGGTTCGGGTT+TGG | + | Chr8:74863885-74863904 | MsG0880046556.01.T01:CDS | 55.0% |
| ! | CCTTGATCCTGTTGGTAGGC+CGG | + | Chr8:74864814-74864833 | MsG0880046556.01.T01:intron | 55.0% |
| ! | CTAGCTTCGGGTTCGGGTTT+GGG | + | Chr8:74863886-74863905 | MsG0880046556.01.T01:CDS | 55.0% |
| ! | TTCGGGTTCGGGTTTGGGTT+CGG | + | Chr8:74863891-74863910 | MsG0880046556.01.T01:CDS | 55.0% |
| ! | TTGGGTTCGGGTTCAGGAAG+AGG | + | Chr8:74863904-74863923 | MsG0880046556.01.T01:CDS | 55.0% |
| !! | GAGAGACTAGCTTCGGGTTC+GGG | + | Chr8:74863880-74863899 | MsG0880046556.01.T01:CDS | 55.0% |
| CAAATGAGAGCAGCGGTGGG+TGG | + | Chr8:74864381-74864400 | MsG0880046556.01.T01:intron | 60.0% | |
| CCGGCCTACCAACAGGATCA+AGG | - | Chr8:74864817-74864836 | None:intergenic | 60.0% | |
| ! | AAGGTGCTCCGGCGAGAATG+TGG | - | Chr8:74863477-74863496 | None:intergenic | 60.0% |
| ! | GGTGGGTGGTTTGCGCAATG+TGG | + | Chr8:74864395-74864414 | MsG0880046556.01.T01:intron | 60.0% |
| ! | TCGGGTTCGGGTTTGGGTTC+GGG | + | Chr8:74863892-74863911 | MsG0880046556.01.T01:CDS | 60.0% |
| ! | TCGGGTTTGGGTTCGGGTTC+AGG | + | Chr8:74863898-74863917 | MsG0880046556.01.T01:CDS | 60.0% |
| GTGCTCCGGCGAGAATGTGG+TGG | - | Chr8:74863474-74863493 | None:intergenic | 65.0% | |
| TCCGGCCACCACATTCTCGC+CGG | + | Chr8:74863466-74863485 | MsG0880046556.01.T01:five_prime_UTR | 65.0% | |
| TCCGGCGAGAATGTGGTGGC+CGG | - | Chr8:74863470-74863489 | None:intergenic | 65.0% | |
| TGGTGGCCGGAGAGCGAAGA+AGG | - | Chr8:74863457-74863476 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 74863374 | 74865153 | 74863374 | ID=MsG0880046556.01;Name=MsG0880046556.01 |
| Chr8 | mRNA | 74863374 | 74865153 | 74863374 | ID=MsG0880046556.01.T01;Parent=MsG0880046556.01;Name=MsG0880046556.01.T01;_AED=0.34;_eAED=0.35;_QI=431|1|0.8|1|0.25|0.4|5|0|159 |
| Chr8 | exon | 74863374 | 74864135 | 74863374 | ID=MsG0880046556.01.T01:exon:31321;Parent=MsG0880046556.01.T01 |
| Chr8 | exon | 74864648 | 74864715 | 74864648 | ID=MsG0880046556.01.T01:exon:31322;Parent=MsG0880046556.01.T01 |
| Chr8 | exon | 74865073 | 74865153 | 74865073 | ID=MsG0880046556.01.T01:exon:31323;Parent=MsG0880046556.01.T01 |
| Chr8 | five_prime_UTR | 74863374 | 74863804 | 74863374 | ID=MsG0880046556.01.T01:five_prime_utr;Parent=MsG0880046556.01.T01 |
| Chr8 | CDS | 74863805 | 74864135 | 74863805 | ID=MsG0880046556.01.T01:cds;Parent=MsG0880046556.01.T01 |
| Chr8 | CDS | 74864648 | 74864715 | 74864648 | ID=MsG0880046556.01.T01:cds;Parent=MsG0880046556.01.T01 |
| Chr8 | CDS | 74865073 | 74865153 | 74865073 | ID=MsG0880046556.01.T01:cds;Parent=MsG0880046556.01.T01 |
| Gene Sequence |
| Protein sequence |
