AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013548.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013548.01.T01 MTR_3g046330 77.273 242 6 2 1 242 1 193 2.81e-127 367
MsG0380013548.01.T01 MTR_8g005990 37.692 260 116 5 24 280 33 249 5.56e-43 151
MsG0380013548.01.T01 MTR_8g010580 42.254 213 88 2 29 239 12 191 1.59e-41 145
MsG0380013548.01.T01 MTR_8g010580 42.254 213 88 2 29 239 12 191 2.92e-41 145
MsG0380013548.01.T01 MTR_8g010580 42.254 213 88 2 29 239 12 191 8.25e-41 145
MsG0380013548.01.T01 MTR_8g005990 35.769 260 98 6 24 280 33 226 7.28e-35 129
MsG0380013548.01.T01 MTR_1g014040 36.408 206 90 3 38 238 54 223 7.33e-35 130
MsG0380013548.01.T01 MTR_8g103840 30.833 240 125 5 37 267 56 263 4.01e-26 106
MsG0380013548.01.T01 MTR_8g103840 29.508 244 127 6 37 267 15 226 4.53e-24 100
MsG0380013548.01.T01 MTR_2027s0010 29.252 147 102 1 29 175 2 146 5.22e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013548.01.T01 AT1G06550 66.197 213 39 1 29 241 13 192 3.88e-97 291
MsG0380013548.01.T01 AT5G65940 41.176 238 99 3 28 257 10 214 8.92e-47 159
MsG0380013548.01.T01 AT5G65940 41.176 238 99 3 28 257 10 214 2.00e-46 159
MsG0380013548.01.T01 AT5G65940 41.176 238 99 3 28 257 10 214 3.92e-46 159
MsG0380013548.01.T01 AT5G65940 41.176 238 99 3 28 257 10 214 3.92e-46 159
MsG0380013548.01.T01 AT2G30660 40.816 245 88 4 29 257 7 210 9.33e-46 158
MsG0380013548.01.T01 AT2G30650 43.119 218 85 3 28 241 6 188 2.07e-45 156
MsG0380013548.01.T01 AT2G30650 43.119 218 85 3 28 241 6 188 1.92e-44 155
MsG0380013548.01.T01 AT4G31810 36.820 239 102 5 5 238 27 221 7.95e-39 140
MsG0380013548.01.T01 AT2G30660 38.356 219 78 4 55 257 1 178 2.02e-34 127
MsG0380013548.01.T01 AT3G60510 37.615 218 101 2 27 242 37 221 2.27e-34 127
MsG0380013548.01.T01 AT3G60510 37.615 218 101 2 27 242 37 221 1.23e-33 126
MsG0380013548.01.T01 AT3G60510 37.615 218 101 2 27 242 37 221 1.31e-33 127
MsG0380013548.01.T01 AT4G13360 31.967 244 121 7 37 267 59 270 2.96e-26 107
MsG0380013548.01.T01 AT3G24360 31.250 240 124 5 37 267 56 263 1.07e-25 105
MsG0380013548.01.T01 AT3G24360 30.081 246 127 7 35 267 54 267 8.78e-23 96.3
MsG0380013548.01.T01 AT3G24360 29.675 246 128 6 35 267 54 267 1.72e-22 96.7
MsG0380013548.01.T01 AT4G16210 26.842 190 122 4 32 217 14 190 1.20e-12 67.0

Find 61 sgRNAs with CRISPR-Local

Find 144 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATCTGGTTTCCCTCATTT+TGG 0.161326 3:+40517768 MsG0380013548.01.T01:CDS
ATTTCTGCTAGCAGAATATT+TGG 0.192392 3:+40516084 MsG0380013548.01.T01:CDS
TGGTTATGTTCTACTCTATC+TGG 0.241852 3:+40517753 MsG0380013548.01.T01:CDS
GGTGAATACTTGGCGCTTAC+TGG 0.275323 3:+40517663 MsG0380013548.01.T01:CDS
TTGCAATTACAAAGACAATA+AGG 0.292221 3:-40515549 None:intergenic
GCTGGTAGGGCTTTCTGTGC+TGG 0.297545 3:+40516275 MsG0380013548.01.T01:CDS
GCTACTCCTGAAGCAAGTTT+TGG 0.303462 3:+40517265 MsG0380013548.01.T01:CDS
ACGTATTACTGGAGGGGAAT+TGG 0.341339 3:-40517820 None:intergenic
TGATCACTTGCCTGTTCATT+TGG 0.341505 3:-40515502 None:intergenic
TACTATCATTCTCGTTTGCC+AGG 0.369194 3:+40517313 MsG0380013548.01.T01:CDS
TGTTCGGTCCTACGTATTAC+TGG 0.382252 3:-40517831 None:intergenic
CGTATTACTGGAGGGGAATT+GGG 0.385243 3:-40517819 None:intergenic
GTTACAACTGAGAATTTCAA+TGG 0.396852 3:-40517112 None:intergenic
GAGATAGCATTCAACTGCTT+TGG 0.402603 3:-40515924 None:intergenic
TGAAATCCAAAACTTGCTTC+AGG 0.406236 3:-40517271 None:intergenic
AGCAGATCTAATTATCTTGA+AGG 0.411003 3:+40516129 MsG0380013548.01.T01:CDS
GCTTTACTCTTTGTAGTGTT+CGG 0.411365 3:-40517847 None:intergenic
GAGAAGAGATAGACCATGTA+AGG 0.415250 3:+40515883 MsG0380013548.01.T01:CDS
GGAATTAGTTGCGGCTGGAC+TGG 0.425198 3:+40517704 MsG0380013548.01.T01:CDS
GGGGATTTGAGAGTATTCTA+TGG 0.430649 3:+40516299 MsG0380013548.01.T01:CDS
AGAAATTCTTTGTGAGATTG+TGG 0.436840 3:-40517348 None:intergenic
GTAGGGCTTTCTGTGCTGGA+GGG 0.445553 3:+40516279 MsG0380013548.01.T01:CDS
TCATTTACACTTTGCTGTCA+TGG 0.447967 3:-40517380 None:intergenic
ACTTGCCTGTTCATTTGGTA+TGG 0.449051 3:-40515497 None:intergenic
TGCAATTACAAAGACAATAA+GGG 0.453477 3:-40515548 None:intergenic
TCTTGTCCATGGAATTTCAA+TGG 0.455048 3:+40517066 MsG0380013548.01.T01:CDS
ATATGTGAGCAGTGAACATT+GGG 0.455405 3:-40517793 None:intergenic
AAAATCTGTACACCACTTCA+AGG 0.458689 3:-40516877 None:intergenic
AGGTTCGACTTTACCAGGTC+AGG 0.465171 3:-40515948 None:intergenic
CATTCATGTAGGTGAATACT+TGG 0.467399 3:+40517653 MsG0380013548.01.T01:CDS
CTTACTGGAGCACGGTTGAA+TGG 0.470855 3:+40517678 MsG0380013548.01.T01:CDS
TGCTTCCATACCAAATGAAC+AGG 0.473128 3:+40515492 MsG0380013548.01.T01:CDS
CTTGTCCATGGAATTTCAAT+GGG 0.476159 3:+40517067 MsG0380013548.01.T01:CDS
CATCAGGTTGCTCTTGTCCA+TGG 0.477425 3:+40517055 MsG0380013548.01.T01:intron
TTTGGATTTCATACTGATTG+TGG 0.478255 3:+40517283 MsG0380013548.01.T01:CDS
GGAAAGGAATTAGTTGCGGC+TGG 0.504298 3:+40517699 MsG0380013548.01.T01:CDS
CTCCACCCATTGAAATTCCA+TGG 0.515087 3:-40517072 None:intergenic
TCTTATAGGTACTAATGTGA+TGG 0.519860 3:-40516910 None:intergenic
TCAAAGTAATTACCCTTACA+TGG 0.526473 3:-40515896 None:intergenic
TAGGGCTTTCTGTGCTGGAG+GGG 0.527824 3:+40516280 MsG0380013548.01.T01:CDS
GGTAGGGCTTTCTGTGCTGG+AGG 0.528264 3:+40516278 MsG0380013548.01.T01:CDS
CATATGTGAGCAGTGAACAT+TGG 0.530840 3:-40517794 None:intergenic
GAACATTGGGAGCCAAAATG+AGG 0.531983 3:-40517780 None:intergenic
TTACAACTGAGAATTTCAAT+GGG 0.551626 3:-40517111 None:intergenic
GTCCATGGAATTTCAATGGG+TGG 0.557121 3:+40517070 MsG0380013548.01.T01:CDS
GAATGCTATCTCACCTGACC+TGG 0.565041 3:+40515935 MsG0380013548.01.T01:CDS
AGAGATCATGTCATTCATGT+AGG 0.572206 3:+40517642 MsG0380013548.01.T01:CDS
ACTATCATTCTCGTTTGCCA+GGG 0.586309 3:+40517314 MsG0380013548.01.T01:CDS
AACATTGGGAGCCAAAATGA+GGG 0.596430 3:-40517779 None:intergenic
CGGTCCTACGTATTACTGGA+GGG 0.605005 3:-40517827 None:intergenic
GAATGGAAAGGAATTAGTTG+CGG 0.611054 3:+40517695 MsG0380013548.01.T01:CDS
TGGAGCACGGTTGAATGGAA+AGG 0.612770 3:+40517683 MsG0380013548.01.T01:CDS
ACTTGGCGCTTACTGGAGCA+CGG 0.621637 3:+40517670 MsG0380013548.01.T01:CDS
GGTCCTACGTATTACTGGAG+GGG 0.624846 3:-40517826 None:intergenic
CATGGAATTTCAATGGGTGG+AGG 0.625143 3:+40517073 MsG0380013548.01.T01:CDS
TCGGTCCTACGTATTACTGG+AGG 0.628832 3:-40517828 None:intergenic
GATTTGAGAGTATTCTATGG+TGG 0.656652 3:+40516302 MsG0380013548.01.T01:CDS
AGGGGATTCATGCCTTGAAG+TGG 0.660397 3:+40516865 MsG0380013548.01.T01:intron
TAGTACCTATAAGAAAACTC+AGG 0.673028 3:+40516919 MsG0380013548.01.T01:CDS
AGAAGAGATAGACCATGTAA+GGG 0.680019 3:+40515884 MsG0380013548.01.T01:CDS
ATTCCCCTCCAGTAATACGT+AGG 0.712834 3:+40517823 MsG0380013548.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAAATATTTCATAAATT+AGG + Chr3:40517398-40517417 MsG0380013548.01.T01:intron 10.0%
!!! ATAACTAATTGTTATTTTTA+GGG + Chr3:40516251-40516270 MsG0380013548.01.T01:intron 10.0%
!!! TATAACTAATTGTTATTTTT+AGG + Chr3:40516250-40516269 MsG0380013548.01.T01:intron 10.0%
!! AAATATTTAATTGATACACA+TGG - Chr3:40517546-40517565 None:intergenic 15.0%
!! AATATATTACTATTCAAAAG+AGG - Chr3:40516835-40516854 None:intergenic 15.0%
!! ATTATTCAAAAATATATGCT+TGG + Chr3:40515812-40515831 MsG0380013548.01.T01:intron 15.0%
!! TACAAAATCAAAATTCAAAA+TGG - Chr3:40515852-40515871 None:intergenic 15.0%
!!! ATTTTGAATTTTGATTTTGT+AGG + Chr3:40515851-40515870 MsG0380013548.01.T01:intron 15.0%
!!! CTTTTTTCTTATAATATTAC+TGG - Chr3:40516481-40516500 None:intergenic 15.0%
!!! GATTAAAAAAGATATTTTGA+AGG - Chr3:40515980-40515999 None:intergenic 15.0%
!! TAATATATTTCTTCTTGACA+GGG + Chr3:40516846-40516865 MsG0380013548.01.T01:intron 20.0%
!! TAATGAGAGAAATAAAGTAT+AGG + Chr3:40516789-40516808 MsG0380013548.01.T01:intron 20.0%
!! TATGCTTGGTAAATTAATAA+TGG + Chr3:40515826-40515845 MsG0380013548.01.T01:intron 20.0%
!! TTTAATCTTTGAATACAATC+AGG + Chr3:40516060-40516079 MsG0380013548.01.T01:intron 20.0%
!!! AATCTATTGTTTTAGAATTG+AGG - Chr3:40517465-40517484 None:intergenic 20.0%
!!! ATCTATTGTTTTAGAATTGA+GGG - Chr3:40517464-40517483 None:intergenic 20.0%
!!! CAAAGCATTTTTTGAAATTT+AGG - Chr3:40517235-40517254 None:intergenic 20.0%
!!! TATACTTTATTTCTCTCATT+AGG - Chr3:40516790-40516809 None:intergenic 20.0%
! AATATATTTCTTCTTGACAG+GGG + Chr3:40516847-40516866 MsG0380013548.01.T01:intron 25.0%
! AGCAGAATATTTGGAAAAAT+GGG + Chr3:40516093-40516112 MsG0380013548.01.T01:CDS 25.0%
! ATCTTACTCATCAATAGTTA+TGG + Chr3:40517584-40517603 MsG0380013548.01.T01:intron 25.0%
! ATTTCAAAAAATGCTTTGAC+AGG + Chr3:40517237-40517256 MsG0380013548.01.T01:intron 25.0%
! ATTTCTCTCATTAGGTTTAT+TGG - Chr3:40516782-40516801 None:intergenic 25.0%
! GTAATATATTTCTTCTTGAC+AGG + Chr3:40516845-40516864 MsG0380013548.01.T01:intron 25.0%
! GTCATTTCAACAATTTCAAA+GGG - Chr3:40516173-40516192 None:intergenic 25.0%
! TAGCAGAATATTTGGAAAAA+TGG + Chr3:40516092-40516111 MsG0380013548.01.T01:CDS 25.0%
! TCAATAGTTATGGAACTTTA+AGG + Chr3:40517594-40517613 MsG0380013548.01.T01:intron 25.0%
! TGCAATTACAAAGACAATAA+GGG - Chr3:40515551-40515570 None:intergenic 25.0%
! TTACAACTGAGAATTTCAAT+GGG - Chr3:40517114-40517133 None:intergenic 25.0%
! TTCTCAGCTTCTTAAAATAA+CGG - Chr3:40515711-40515730 None:intergenic 25.0%
! TTGCAATTACAAAGACAATA+AGG - Chr3:40515552-40515571 None:intergenic 25.0%
!! AAAGTCTCATGTTTTCTAAA+TGG + Chr3:40517017-40517036 MsG0380013548.01.T01:intron 25.0%
!! AAGTCTCATGTTTTCTAAAT+GGG + Chr3:40517018-40517037 MsG0380013548.01.T01:intron 25.0%
!! TTTTGAATAATGTGTCTGTT+TGG - Chr3:40515803-40515822 None:intergenic 25.0%
!!! TTATTCGTCTAAAACCTTTT+TGG + Chr3:40517170-40517189 MsG0380013548.01.T01:intron 25.0%
!!! TTATTTTTTAATCAGCCTAG+AGG + Chr3:40516361-40516380 MsG0380013548.01.T01:intron 25.0%
AAGTTATTGAATGCATGTGT+TGG + Chr3:40516501-40516520 MsG0380013548.01.T01:intron 30.0%
AATACACCACAAAACCAAAA+AGG - Chr3:40517187-40517206 None:intergenic 30.0%
AGAAATTCTTTGTGAGATTG+TGG - Chr3:40517351-40517370 None:intergenic 30.0%
AGAATATTTGGAAAAATGGG+AGG + Chr3:40516096-40516115 MsG0380013548.01.T01:CDS 30.0%
AGCAGATCTAATTATCTTGA+AGG + Chr3:40516129-40516148 MsG0380013548.01.T01:CDS 30.0%
ATTTCTGCTAGCAGAATATT+TGG + Chr3:40516084-40516103 MsG0380013548.01.T01:CDS 30.0%
GGTCATTTCAACAATTTCAA+AGG - Chr3:40516174-40516193 None:intergenic 30.0%
GTTACAACTGAGAATTTCAA+TGG - Chr3:40517115-40517134 None:intergenic 30.0%
TAGTACCTATAAGAAAACTC+AGG + Chr3:40516919-40516938 MsG0380013548.01.T01:CDS 30.0%
TATTTCCAACATTAACCTCT+AGG - Chr3:40516379-40516398 None:intergenic 30.0%
TCAAAGTAATTACCCTTACA+TGG - Chr3:40515899-40515918 None:intergenic 30.0%
TCTTATAGGTACTAATGTGA+TGG - Chr3:40516913-40516932 None:intergenic 30.0%
TGAATTTCTTAGTGCATGTT+TGG + Chr3:40515632-40515651 MsG0380013548.01.T01:intron 30.0%
TTAAGACACACTAATCACTT+AGG - Chr3:40516002-40516021 None:intergenic 30.0%
TTCTAAATGTTCAATGACAG+TGG - Chr3:40516969-40516988 None:intergenic 30.0%
! AGTCTCATGTTTTCTAAATG+GGG + Chr3:40517019-40517038 MsG0380013548.01.T01:intron 30.0%
! CTTTAGATTAAAAGTGTGTC+CGG - Chr3:40516564-40516583 None:intergenic 30.0%
! TTGATTTTGTAGGATGTTCT+TGG + Chr3:40515861-40515880 MsG0380013548.01.T01:intron 30.0%
! TTTGGATTTCATACTGATTG+TGG + Chr3:40517283-40517302 MsG0380013548.01.T01:CDS 30.0%
!! AGATATTTTGAAGGTTGAGT+AGG - Chr3:40515971-40515990 None:intergenic 30.0%
!!! AATTGTTATTTTTAGGGAGC+TGG + Chr3:40516257-40516276 MsG0380013548.01.T01:intron 30.0%
!!! CTAAAACCTTTTTGGTTTTG+TGG + Chr3:40517178-40517197 MsG0380013548.01.T01:intron 30.0%
AAAATCTGTACACCACTTCA+AGG - Chr3:40516880-40516899 None:intergenic 35.0%
AAACAGTATTGTCACTGTAG+TGG - Chr3:40516738-40516757 None:intergenic 35.0%
AGAAGAGATAGACCATGTAA+GGG + Chr3:40515884-40515903 MsG0380013548.01.T01:CDS 35.0%
AGAGATCATGTCATTCATGT+AGG + Chr3:40517642-40517661 MsG0380013548.01.T01:CDS 35.0%
AGTCATCTATCTTCATCGTA+TGG - Chr3:40516633-40516652 None:intergenic 35.0%
ATATGTGAGCAGTGAACATT+GGG - Chr3:40517796-40517815 None:intergenic 35.0%
CATTCATGTAGGTGAATACT+TGG + Chr3:40517653-40517672 MsG0380013548.01.T01:CDS 35.0%
CGTTTGTATCCTGGAAATAA+AGG + Chr3:40517511-40517530 MsG0380013548.01.T01:intron 35.0%
CTCATTAGGTTTATTGGAAC+TGG - Chr3:40516776-40516795 None:intergenic 35.0%
CTTGTCCATGGAATTTCAAT+GGG + Chr3:40517067-40517086 MsG0380013548.01.T01:CDS 35.0%
GAATGGAAAGGAATTAGTTG+CGG + Chr3:40517695-40517714 MsG0380013548.01.T01:CDS 35.0%
TATTACTGGTGTCTACATGT+CGG - Chr3:40516467-40516486 None:intergenic 35.0%
TCTTGTCCATGGAATTTCAA+TGG + Chr3:40517066-40517085 MsG0380013548.01.T01:CDS 35.0%
TGAATAATGTGTCTGTTTGG+AGG - Chr3:40515800-40515819 None:intergenic 35.0%
TGGTTATGTTCTACTCTATC+TGG + Chr3:40517753-40517772 MsG0380013548.01.T01:CDS 35.0%
TGTTAGACACTAATACGTGT+AGG + Chr3:40516535-40516554 MsG0380013548.01.T01:intron 35.0%
! AAGTGGTGTACAGATTTTAC+TGG + Chr3:40516882-40516901 MsG0380013548.01.T01:CDS 35.0%
! ACTAAAGCACCTTTATTTCC+AGG - Chr3:40517523-40517542 None:intergenic 35.0%
! CAGAACCTGAGTTTTCTTAT+AGG - Chr3:40516927-40516946 None:intergenic 35.0%
! TCATTTACACTTTGCTGTCA+TGG - Chr3:40517383-40517402 None:intergenic 35.0%
! TGAAATCCAAAACTTGCTTC+AGG - Chr3:40517274-40517293 None:intergenic 35.0%
!! AACTCATTTTGTCACTTCTG+AGG + Chr3:40517728-40517747 MsG0380013548.01.T01:CDS 35.0%
!! GATTTGAGAGTATTCTATGG+TGG + Chr3:40516302-40516321 MsG0380013548.01.T01:CDS 35.0%
!!! ATTTTGTCACTTCTGAGGTT+TGG + Chr3:40517733-40517752 MsG0380013548.01.T01:CDS 35.0%
!!! TTATTTTTAGGGAGCTGGTA+GGG + Chr3:40516262-40516281 MsG0380013548.01.T01:intron 35.0%
AACATTGGGAGCCAAAATGA+GGG - Chr3:40517782-40517801 None:intergenic 40.0%
ACAATACTGTTTGCGACTGT+AGG + Chr3:40516746-40516765 MsG0380013548.01.T01:intron 40.0%
ACTATCATTCTCGTTTGCCA+GGG + Chr3:40517314-40517333 MsG0380013548.01.T01:CDS 40.0%
ACTTGCCTGTTCATTTGGTA+TGG - Chr3:40515500-40515519 None:intergenic 40.0%
ATCAGCCTAGAGGTTAATGT+TGG + Chr3:40516371-40516390 MsG0380013548.01.T01:intron 40.0%
CAATACTGTTTGCGACTGTA+GGG + Chr3:40516747-40516766 MsG0380013548.01.T01:intron 40.0%
CATATGTGAGCAGTGAACAT+TGG - Chr3:40517797-40517816 None:intergenic 40.0%
GAGAAGAGATAGACCATGTA+AGG + Chr3:40515883-40515902 MsG0380013548.01.T01:CDS 40.0%
GAGATAGCATTCAACTGCTT+TGG - Chr3:40515927-40515946 None:intergenic 40.0%
GTCATTCGATCTTCATCCAA+TGG + Chr3:40516702-40516721 MsG0380013548.01.T01:intron 40.0%
TAATGTGTCTGTTTGGAGGA+CGG - Chr3:40515796-40515815 None:intergenic 40.0%
TACTATCATTCTCGTTTGCC+AGG + Chr3:40517313-40517332 MsG0380013548.01.T01:CDS 40.0%
TGATCACTTGCCTGTTCATT+TGG - Chr3:40515505-40515524 None:intergenic 40.0%
TGCTTCCATACCAAATGAAC+AGG + Chr3:40515492-40515511 MsG0380013548.01.T01:CDS 40.0%
TTGTGGTTACCTAAAAACCC+TGG - Chr3:40517334-40517353 None:intergenic 40.0%
!! CTATCTGGTTTCCCTCATTT+TGG + Chr3:40517768-40517787 MsG0380013548.01.T01:CDS 40.0%
!! GGGGATTTGAGAGTATTCTA+TGG + Chr3:40516299-40516318 MsG0380013548.01.T01:CDS 40.0%
!!! GTTATTTTTAGGGAGCTGGT+AGG + Chr3:40516261-40516280 MsG0380013548.01.T01:intron 40.0%
ACGTATTACTGGAGGGGAAT+TGG - Chr3:40517823-40517842 None:intergenic 45.0%
ATTCCCCTCCAGTAATACGT+AGG + Chr3:40517823-40517842 MsG0380013548.01.T01:CDS 45.0%
CACTAATACGTGTAGGACAC+CGG + Chr3:40516542-40516561 MsG0380013548.01.T01:intron 45.0%
CAGTATTGTCACTGTAGTGG+TGG - Chr3:40516735-40516754 None:intergenic 45.0%
CATGGAATTTCAATGGGTGG+AGG + Chr3:40517073-40517092 MsG0380013548.01.T01:CDS 45.0%
CGTATTACTGGAGGGGAATT+GGG - Chr3:40517822-40517841 None:intergenic 45.0%
CTCCACCCATTGAAATTCCA+TGG - Chr3:40517075-40517094 None:intergenic 45.0%
CTTCGTGATCGTTTGTATCC+TGG + Chr3:40517502-40517521 MsG0380013548.01.T01:intron 45.0%
GAACATTGGGAGCCAAAATG+AGG - Chr3:40517783-40517802 None:intergenic 45.0%
GACTTACACAAACACCACAC+CGG + Chr3:40516427-40516446 MsG0380013548.01.T01:intron 45.0%
GTCCATGGAATTTCAATGGG+TGG + Chr3:40517070-40517089 MsG0380013548.01.T01:CDS 45.0%
TGAGTAGGTTCGACTTTACC+AGG - Chr3:40515956-40515975 None:intergenic 45.0%
TGTTCGGTCCTACGTATTAC+TGG - Chr3:40517834-40517853 None:intergenic 45.0%
! GCTACTCCTGAAGCAAGTTT+TGG + Chr3:40517265-40517284 MsG0380013548.01.T01:CDS 45.0%
! TCTCGTTTGCCAGGGTTTTT+AGG + Chr3:40517322-40517341 MsG0380013548.01.T01:CDS 45.0%
!! GGGTGCTGTTATGTTACATC+AGG + Chr3:40517039-40517058 MsG0380013548.01.T01:intron 45.0%
!! AAAATATATAATAACTAATA+GGG - Chr3:40516195-40516214 None:intergenic 5.0%
!! TAAAATATATAATAACTAAT+AGG - Chr3:40516196-40516215 None:intergenic 5.0%
AGGGGATTCATGCCTTGAAG+TGG + Chr3:40516865-40516884 MsG0380013548.01.T01:intron 50.0%
AGGTTCGACTTTACCAGGTC+AGG - Chr3:40515951-40515970 None:intergenic 50.0%
CGATGCTTCATAGCACAGCA+AGG - Chr3:40516406-40516425 None:intergenic 50.0%
CGGTCCTACGTATTACTGGA+GGG - Chr3:40517830-40517849 None:intergenic 50.0%
CTTACTGGAGCACGGTTGAA+TGG + Chr3:40517678-40517697 MsG0380013548.01.T01:CDS 50.0%
GAATGCTATCTCACCTGACC+TGG + Chr3:40515935-40515954 MsG0380013548.01.T01:CDS 50.0%
GGAAAGGAATTAGTTGCGGC+TGG + Chr3:40517699-40517718 MsG0380013548.01.T01:CDS 50.0%
GGTCCTACGTATTACTGGAG+GGG - Chr3:40517829-40517848 None:intergenic 50.0%
GGTGAATACTTGGCGCTTAC+TGG + Chr3:40517663-40517682 MsG0380013548.01.T01:CDS 50.0%
TACTGTTTGCGACTGTAGGG+AGG + Chr3:40516750-40516769 MsG0380013548.01.T01:intron 50.0%
TCGGTCCTACGTATTACTGG+AGG - Chr3:40517831-40517850 None:intergenic 50.0%
TGGAGCACGGTTGAATGGAA+AGG + Chr3:40517683-40517702 MsG0380013548.01.T01:CDS 50.0%
! CATCAGGTTGCTCTTGTCCA+TGG + Chr3:40517055-40517074 MsG0380013548.01.T01:intron 50.0%
!! GTCACTGTAGTGGTGGATGT+CGG - Chr3:40516728-40516747 None:intergenic 50.0%
ACTTGGCGCTTACTGGAGCA+CGG + Chr3:40517670-40517689 MsG0380013548.01.T01:CDS 55.0%
CACAAACACCACACCGGACA+CGG + Chr3:40516433-40516452 MsG0380013548.01.T01:intron 55.0%
GGAATTAGTTGCGGCTGGAC+TGG + Chr3:40517704-40517723 MsG0380013548.01.T01:CDS 55.0%
GTAGGGCTTTCTGTGCTGGA+GGG + Chr3:40516279-40516298 MsG0380013548.01.T01:CDS 55.0%
TAGGGCTTTCTGTGCTGGAG+GGG + Chr3:40516280-40516299 MsG0380013548.01.T01:CDS 55.0%
! GGTGTCTACATGTCGGTGTC+AGG - Chr3:40516460-40516479 None:intergenic 55.0%
!! TAGTGGTGGATGTCGGCCAT+TGG - Chr3:40516721-40516740 None:intergenic 55.0%
GCTGGTAGGGCTTTCTGTGC+TGG + Chr3:40516275-40516294 MsG0380013548.01.T01:CDS 60.0%
GGTAGGGCTTTCTGTGCTGG+AGG + Chr3:40516278-40516297 MsG0380013548.01.T01:CDS 60.0%
TGTCAGGACCGTGTCCGGTG+TGG - Chr3:40516444-40516463 None:intergenic 65.0%
!! GTCGGTGTCAGGACCGTGTC+CGG - Chr3:40516449-40516468 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 40515481 40517866 40515481 ID=MsG0380013548.01;Name=MsG0380013548.01
Chr3 mRNA 40515481 40517866 40515481 ID=MsG0380013548.01.T01;Parent=MsG0380013548.01;Name=MsG0380013548.01.T01;_AED=0.47;_eAED=0.62;_QI=0|0.71|0.62|1|0.71|0.75|8|0|280
Chr3 exon 40515481 40515561 40515481 ID=MsG0380013548.01.T01:exon:8659;Parent=MsG0380013548.01.T01
Chr3 exon 40515873 40515956 40515873 ID=MsG0380013548.01.T01:exon:8660;Parent=MsG0380013548.01.T01
Chr3 exon 40516082 40516150 40516082 ID=MsG0380013548.01.T01:exon:8661;Parent=MsG0380013548.01.T01
Chr3 exon 40516272 40516335 40516272 ID=MsG0380013548.01.T01:exon:8662;Parent=MsG0380013548.01.T01
Chr3 exon 40516867 40516940 40516867 ID=MsG0380013548.01.T01:exon:8663;Parent=MsG0380013548.01.T01
Chr3 exon 40517061 40517144 40517061 ID=MsG0380013548.01.T01:exon:8664;Parent=MsG0380013548.01.T01
Chr3 exon 40517259 40517394 40517259 ID=MsG0380013548.01.T01:exon:8665;Parent=MsG0380013548.01.T01
Chr3 exon 40517616 40517866 40517616 ID=MsG0380013548.01.T01:exon:8666;Parent=MsG0380013548.01.T01
Chr3 CDS 40515481 40515561 40515481 ID=MsG0380013548.01.T01:cds;Parent=MsG0380013548.01.T01
Chr3 CDS 40515873 40515956 40515873 ID=MsG0380013548.01.T01:cds;Parent=MsG0380013548.01.T01
Chr3 CDS 40516082 40516150 40516082 ID=MsG0380013548.01.T01:cds;Parent=MsG0380013548.01.T01
Chr3 CDS 40516272 40516335 40516272 ID=MsG0380013548.01.T01:cds;Parent=MsG0380013548.01.T01
Chr3 CDS 40516867 40516940 40516867 ID=MsG0380013548.01.T01:cds;Parent=MsG0380013548.01.T01
Chr3 CDS 40517061 40517144 40517061 ID=MsG0380013548.01.T01:cds;Parent=MsG0380013548.01.T01
Chr3 CDS 40517259 40517394 40517259 ID=MsG0380013548.01.T01:cds;Parent=MsG0380013548.01.T01
Chr3 CDS 40517616 40517866 40517616 ID=MsG0380013548.01.T01:cds;Parent=MsG0380013548.01.T01
Gene Sequence

>MsG0380013548.01.T01

ATGGCATCTGCTGCTTCCATACCAAATGAACAGGCAAGTGATCATTTTCTGTATGACATAGCATTTTCCCTTATTGTCTTTGATGTTCTTGGAGAAGAGATAGACCATGTAAGGGTAATTACTTTGAACAGACCAAAGCAGTTGAATGCTATCTCACCTGACCTGGTATTTCTGCTAGCAGAATATTTGGAAAAATGGGAGGAAGATGACAAAGCAGATCTAATTATCTTGAAGGGAGCTGGTAGGGCTTTCTGTGCTGGAGGGGATTTGAGAGTATTCTATGGTGGCAAGACAACAAGGGATTCATGCCTTGAAGTGGTGTACAGATTTTACTGGCTTTGCCATCACATTAGTACCTATAAGAAAACTCAGGTTGCTCTTGTCCATGGAATTTCAATGGGTGGAGGTGCAGCATTGATGATCCCATTGAAATTCTCAGTTGTAACAGAAAAAACAGTCTTTGCTACTCCTGAAGCAAGTTTTGGATTTCATACTGATTGTGGCTTCTCATACTATCATTCTCGTTTGCCAGGGTTTTTAGGTAACCACAATCTCACAAAGAATTTCTTTTTAGATTCCATGACAGCAAAGTGTGAACTATTCTACATAGAAAACTTGAGAGATCATGTCATTCATGTAGGTGAATACTTGGCGCTTACTGGAGCACGGTTGAATGGAAAGGAATTAGTTGCGGCTGGACTGGCAACTCATTTTGTCACTTCTGAGGTTTGGTTATGTTCTACTCTATCTGGTTTCCCTCATTTTGGCTCCCAATGTTCACTGCTCACATATGCTCCCAATTCCCCTCCAGTAATACGTAGGACCGAACACTACAAAGAGTAA

Protein sequence

>MsG0380013548.01.T01

MASAASIPNEQASDHFLYDIAFSLIVFDVLGEEIDHVRVITLNRPKQLNAISPDLVFLLAEYLEKWEEDDKADLIILKGAGRAFCAGGDLRVFYGGKTTRDSCLEVVYRFYWLCHHISTYKKTQVALVHGISMGGGAALMIPLKFSVVTEKTVFATPEASFGFHTDCGFSYYHSRLPGFLGNHNLTKNFFLDSMTAKCELFYIENLRDHVIHVGEYLALTGARLNGKELVAAGLATHFVTSEVWLCSTLSGFPHFGSQCSLLTYAPNSPPVIRRTEHYKE*