AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0001390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001390 MtrunA17_Chr3g0145691 97.970 197 4 0 1 197 1 197 2.26e-141 397
Msa0001390 MtrunA17_Chr8g0347691 91.371 197 17 0 1 197 1 197 1.80e-133 377
Msa0001390 MtrunA17_Chr4g0006821 42.609 115 38 2 126 212 10 124 1.71e-19 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0001390 AT5G39740.2 77.679 224 43 1 1 217 1 224 5.31e-126 358
Msa0001390 AT5G39740.1 77.679 224 43 1 1 217 1 224 5.31e-126 358
Msa0001390 AT3G25520.3 77.679 224 43 1 1 217 1 224 1.60e-125 357
Msa0001390 AT3G25520.1 77.679 224 43 1 1 217 1 224 1.60e-125 357
Msa0001390 AT3G25520.2 73.214 112 23 1 113 217 2 113 8.29e-52 166

Find 106 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGAACAACGTAACGGTATT+TGG 0.124401 1_1:+3097879 None:intergenic
AGAAATTATATTCTGGATTC+TGG 0.196770 1_1:+3096375 None:intergenic
GAGTTGGCCTAGATCAATTT+TGG 0.256726 1_1:-3096240 Msa0001390:three_prime_UTR
TGCACCAAAGACCCGGTTTC+CGG 0.261045 1_1:+3097333 None:intergenic
ATGTTATCATTATACTGTTT+GGG 0.270970 1_1:-3096335 Msa0001390:three_prime_UTR
TTATTGCACTGGTCTCCTTT+TGG 0.304693 1_1:-3097571 Msa0001390:CDS
CCTCGTAGGTGAGCTTCTTC+AGG 0.308472 1_1:+3096622 None:intergenic
ACTTTAGATTATATCAGTTT+TGG 0.314688 1_1:-3096446 Msa0001390:three_prime_UTR
AGGATGACGATGAGTGAAAT+TGG 0.318851 1_1:-3096536 Msa0001390:exon
TATGTTATCATTATACTGTT+TGG 0.322769 1_1:-3096336 Msa0001390:three_prime_UTR
GGCTTCAGGGAGCTTTGGAC+GGG 0.327426 1_1:-3097227 Msa0001390:intron
ACCACCGGAAACCGGGTCTT+TGG 0.336386 1_1:-3097337 Msa0001390:CDS
CACCTTCGACCGCGGCTGTC+TGG 0.353769 1_1:+3098154 None:intergenic
ATTGTCTCTGCTACCATTGC+TGG 0.361362 1_1:-3097758 Msa0001390:CDS
AGTTCTTAAAACTCTTGAAA+TGG 0.366221 1_1:-3097541 Msa0001390:CDS
TCTTGGGCTGCCTTTGCCTA+CGG 0.372098 1_1:+3098240 None:intergenic
CACAGCGACAAAAGGTTTGC+TGG 0.383857 1_1:-3097189 Msa0001390:CDS
CGAACAACGTAACGGTATTT+GGG 0.383918 1_1:+3097880 None:intergenic
CTTGGGCTGCCTTTGCCTAC+GGG 0.385408 1_1:+3098241 None:intergenic
TTAAGACCACCACCGGAAAC+CGG 0.405019 1_1:-3097345 Msa0001390:CDS
TGTTTGGCTTCAGGGAGCTT+TGG 0.408256 1_1:-3097232 Msa0001390:intron
AACAGCAAGAAATTATATTC+TGG 0.418184 1_1:+3096368 None:intergenic
CCGAATGGGTGGTGGGTGAT+TGG 0.423400 1_1:+3098123 None:intergenic
GAGAGCACGGAATGGCCTCC+TGG 0.423509 1_1:+3097384 None:intergenic
AAAAGATCCAAAATTGATCT+AGG 0.423761 1_1:+3096233 None:intergenic
TTCCGATTCCGAATGGGTGG+TGG 0.437998 1_1:+3098115 None:intergenic
TGGCTTCAGGGAGCTTTGGA+CGG 0.456348 1_1:-3097228 Msa0001390:intron
CATAGTTAGTAAGGCCTACA+TGG 0.460963 1_1:+3097684 None:intergenic
CCTCACTTTGGCCTCCATGT+AGG 0.463629 1_1:-3097698 Msa0001390:CDS
AAAGACCCGGTTTCCGGTGG+TGG 0.468463 1_1:+3097339 None:intergenic
ACCCACCACCCATTCGGAAT+CGG 0.470171 1_1:-3098117 Msa0001390:five_prime_UTR
TTCCGTGCTCTCCTTGATGT+TGG 0.475927 1_1:-3097373 Msa0001390:CDS
TCTTATATTACTCAGGCAAC+CGG 0.479611 1_1:-3097436 Msa0001390:intron
AGATTGTAGGCCAGCTAGGT+TGG 0.483927 1_1:+3096190 None:intergenic
ACGGGCCTCGTCACTTTATG+TGG 0.485014 1_1:+3098259 None:intergenic
GCTTCAGGGAGCTTTGGACG+GGG 0.489494 1_1:-3097226 Msa0001390:intron
ATACCGTTACGTTGTTCGAT+TGG 0.490656 1_1:-3097875 Msa0001390:intron
TACCTGCAGCATAGTTAGTA+AGG 0.490657 1_1:+3097675 None:intergenic
ATTTGTATTTCCAACCTAGC+TGG 0.494722 1_1:-3096200 Msa0001390:three_prime_UTR
CTTCAGGGAGCTTTGGACGG+GGG 0.497730 1_1:-3097225 Msa0001390:intron
TAAGAACTCGGCGAGCCAAA+AGG 0.499289 1_1:+3097556 None:intergenic
ACTCAAGACGCTAACAAATA+CGG 0.500093 1_1:-3097907 Msa0001390:CDS
CCAATCACCCACCACCCATT+CGG 0.501475 1_1:-3098123 Msa0001390:five_prime_UTR
GAAATTCAAGAGAAGAAGAG+AGG 0.503110 1_1:-3097965 Msa0001390:CDS
ACAGCCGCGGTCGAAGGTGC+GGG 0.506236 1_1:-3098150 Msa0001390:five_prime_UTR
AGCTTGATGCTGAGGTTCAC+CGG 0.506705 1_1:-3097146 Msa0001390:CDS
CTTTGTCTTTCTTTCCTCGT+AGG 0.506933 1_1:+3096608 None:intergenic
CAAGCTCTCAATTCTGCAGC+CGG 0.507707 1_1:-3096570 Msa0001390:CDS
GTCATCCTCATCATCATCTC+CGG 0.510253 1_1:+3096551 None:intergenic
ATATTCCTCACAGCGACAAA+AGG 0.513989 1_1:-3097197 Msa0001390:CDS
GTACCATTCCGATTCCGAAT+GGG 0.517511 1_1:+3098109 None:intergenic
ATGTTACCAGCTTATTGCAC+TGG 0.517859 1_1:-3097582 Msa0001390:intron
CTGTGGAACCAGCTGACTCC+AGG 0.519286 1_1:-3097402 Msa0001390:CDS
GTTGATTCAGGCATTTGTGA+AGG 0.519616 1_1:-3098025 Msa0001390:intron
GACAGCCGCGGTCGAAGGTG+CGG 0.523616 1_1:-3098151 Msa0001390:five_prime_UTR
GACGATGAGTGAAATTGGGT+TGG 0.523666 1_1:-3096531 Msa0001390:exon
CCGGGTCTTTGGTGCACTCA+AGG 0.524232 1_1:-3097326 Msa0001390:intron
AAATTCAAGAGAAGAAGAGA+GGG 0.524882 1_1:-3097964 Msa0001390:CDS
AATGGCCTCCTGGAGTCAGC+TGG 0.528100 1_1:+3097394 None:intergenic
CACCAGACAGCCGCGGTCGA+AGG 0.530457 1_1:-3098156 Msa0001390:five_prime_UTR
TTGAGTAATCAAACGAACTC+TGG 0.530507 1_1:+3097924 None:intergenic
ACGATGAGTGAAATTGGGTT+GGG 0.531052 1_1:-3096530 Msa0001390:exon
GCACATGAGCTTCCTCACTT+TGG 0.534108 1_1:-3097710 Msa0001390:CDS
GGATGACGATGAGTGAAATT+GGG 0.538515 1_1:-3096535 Msa0001390:exon
AAATCGAAACAAGTCTATCC+AGG 0.542261 1_1:+3096411 None:intergenic
TGTTATCATTATACTGTTTG+GGG 0.542461 1_1:-3096334 Msa0001390:three_prime_UTR
AATGAGATTGTAGGCCAGCT+AGG 0.542596 1_1:+3096186 None:intergenic
GAAATGGATGATCAGTATGA+AGG 0.545359 1_1:-3097525 Msa0001390:CDS
AACTGTCGGAATTTGTGAGT+TGG 0.547764 1_1:-3096256 Msa0001390:three_prime_UTR
GTGACGAGGCCCGTAGGCAA+AGG 0.553912 1_1:-3098250 Msa0001390:five_prime_UTR
GGTCTTGTTAAGACCACCAC+CGG 0.557334 1_1:-3097352 Msa0001390:CDS
TTCCACAGAATAATCCTCTC+CGG 0.558152 1_1:+3097417 None:intergenic
AGGAAATTCAAGCTAAACAA+TGG 0.558533 1_1:+3096499 None:intergenic
CCTTGAGTGCACCAAAGACC+CGG 0.561480 1_1:+3097326 None:intergenic
TCCGATTCCGAATGGGTGGT+GGG 0.565668 1_1:+3098116 None:intergenic
GGCCTTACTAACTATGCTGC+AGG 0.566671 1_1:-3097677 Msa0001390:intron
GAAATCACCTTGCCTTGTGG+TGG 0.569736 1_1:+3096163 None:intergenic
TAAGACCACCACCGGAAACC+GGG 0.570064 1_1:-3097344 Msa0001390:CDS
TTGTGGTGGAATGAGATTGT+AGG 0.574520 1_1:+3096177 None:intergenic
CGTACCATTCCGATTCCGAA+TGG 0.575768 1_1:+3098108 None:intergenic
TAATCAAACGAACTCTGGCT+CGG 0.582000 1_1:+3097929 None:intergenic
AAGAACAATATCACCAGCAA+TGG 0.583771 1_1:+3097745 None:intergenic
CCACCCATTCGGAATCGGAA+TGG 0.587704 1_1:-3098112 Msa0001390:intron
CGAGGAAAGAAAGACAAAGT+TGG 0.591281 1_1:-3096604 Msa0001390:CDS
TTCTCTGCACCAGACAGCCG+CGG 0.593497 1_1:-3098163 Msa0001390:five_prime_UTR
TCTCATTCCACCACAAGGCA+AGG 0.593883 1_1:-3096170 Msa0001390:three_prime_UTR
GACCAACATCAAGGAGAGCA+CGG 0.604422 1_1:+3097371 None:intergenic
TTACCAATCGAACAACGTAA+CGG 0.610329 1_1:+3097872 None:intergenic
GTTATCATTATACTGTTTGG+GGG 0.616333 1_1:-3096333 Msa0001390:three_prime_UTR
TCTTAACAAGACCAACATCA+AGG 0.618405 1_1:+3097362 None:intergenic
ACTGCCCGCACCTTCGACCG+CGG 0.619628 1_1:+3098146 None:intergenic
ACCAAAGACCCGGTTTCCGG+TGG 0.622290 1_1:+3097336 None:intergenic
TACAATCTCATTCCACCACA+AGG 0.626292 1_1:-3096175 Msa0001390:three_prime_UTR
CCATTCCGATTCCGAATGGG+TGG 0.629206 1_1:+3098112 None:intergenic
CATAAAGTGACGAGGCCCGT+AGG 0.633384 1_1:-3098256 Msa0001390:five_prime_UTR
TCAGAAATCACCTTGCCTTG+TGG 0.649160 1_1:+3096160 None:intergenic
ACATCAAGGAGAGCACGGAA+TGG 0.653230 1_1:+3097376 None:intergenic
TGCAGCCGGAGATGATGATG+AGG 0.670180 1_1:-3096556 Msa0001390:CDS
TATTACTCAGGCAACCGGAG+AGG 0.678581 1_1:-3097431 Msa0001390:intron
TGGAACCAGCTGACTCCAGG+AGG 0.680812 1_1:-3097399 Msa0001390:CDS
CCTACATGGAGGCCAAAGTG+AGG 0.682005 1_1:+3097698 None:intergenic
AGTTAGTAAGGCCTACATGG+AGG 0.688944 1_1:+3097687 None:intergenic
AACCGGAGAGGATTATTCTG+TGG 0.701124 1_1:-3097419 Msa0001390:CDS
CCTGAAGAAGCTCACCTACG+AGG 0.707001 1_1:-3096622 Msa0001390:CDS
TCAGTATGAAGGCAATGTTG+AGG 0.719344 1_1:-3097514 Msa0001390:intron
AGTGTCCACATAAAGTGACG+AGG 0.738233 1_1:-3098264 Msa0001390:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TACAAATTAAAAAAATGAAA+AGG + chr1_1:3097296-3097315 None:intergenic 10.0%
!!! TTTCATTTTTTTAATTTGTA+AGG - chr1_1:3097296-3097315 Msa0001390:intron 10.0%
!! AAAAAAAAAAAAAAAACTGT+CGG - chr1_1:3098079-3098098 Msa0001390:intron 10.0%
!! TACAAATTAAAAAAATGAAA+AGG + chr1_1:3097296-3097315 None:intergenic 10.0%
!!! TTTCATTTTTTTAATTTGTA+AGG - chr1_1:3097296-3097315 Msa0001390:intron 10.0%
!! AAAAAAAAAAAAAAAACTGT+CGG - chr1_1:3098079-3098098 Msa0001390:intron 10.0%
!!! TAATTATATGGATTAAAAAG+AGG + chr1_1:3096728-3096747 None:intergenic 15.0%
!!! CGATTAATTTGATAATTATA+TGG + chr1_1:3096740-3096759 None:intergenic 15.0%
!! TGACATTGATATTTATTAAT+CGG - chr1_1:3097091-3097110 Msa0001390:intron 15.0%
!!! AGTTTTTTTTTTTTTTTTGC+TGG + chr1_1:3098077-3098096 None:intergenic 15.0%
!!! TAATTATATGGATTAAAAAG+AGG + chr1_1:3096728-3096747 None:intergenic 15.0%
!!! CGATTAATTTGATAATTATA+TGG + chr1_1:3096740-3096759 None:intergenic 15.0%
!! TGACATTGATATTTATTAAT+CGG - chr1_1:3097091-3097110 Msa0001390:intron 15.0%
!!! AGTTTTTTTTTTTTTTTTGC+TGG + chr1_1:3098077-3098096 None:intergenic 15.0%
!!! AGTTAAAAGAGAGTTTTTTA+GGG + chr1_1:3096139-3096158 None:intergenic 20.0%
!! GACATTGATATTTATTAATC+GGG - chr1_1:3097092-3097111 Msa0001390:intron 20.0%
!! TGTTCAAATAATGTCTTTAT+TGG - chr1_1:3097268-3097287 Msa0001390:intron 20.0%
!! GTTCAAATAATGTCTTTATT+GGG - chr1_1:3097269-3097288 Msa0001390:intron 20.0%
!!! ATTTTTTTTGTAGACATTGA+TGG - chr1_1:3097366-3097385 Msa0001390:CDS 20.0%
!! AAATACTACTAATTCAAACA+GGG + chr1_1:3097608-3097627 None:intergenic 20.0%
!! CAACAAAAATTTAACGATTA+AGG + chr1_1:3097873-3097892 None:intergenic 20.0%
!!! ACTTTAGATTATATCAGTTT+TGG - chr1_1:3097903-3097922 Msa0001390:CDS 20.0%
!! TATGTTATCATTATACTGTT+TGG - chr1_1:3098013-3098032 Msa0001390:CDS 20.0%
!! ATGTTATCATTATACTGTTT+GGG - chr1_1:3098014-3098033 Msa0001390:CDS 20.0%
!!! ATCAATTTTGGATCTTTTAT+TGG - chr1_1:3098121-3098140 Msa0001390:five_prime_UTR 20.0%
!!! AGTTAAAAGAGAGTTTTTTA+GGG + chr1_1:3096139-3096158 None:intergenic 20.0%
!! GACATTGATATTTATTAATC+GGG - chr1_1:3097092-3097111 Msa0001390:intron 20.0%
!! TGTTCAAATAATGTCTTTAT+TGG - chr1_1:3097268-3097287 Msa0001390:intron 20.0%
!! GTTCAAATAATGTCTTTATT+GGG - chr1_1:3097269-3097288 Msa0001390:intron 20.0%
!!! ATTTTTTTTGTAGACATTGA+TGG - chr1_1:3097366-3097385 Msa0001390:CDS 20.0%
!! AAATACTACTAATTCAAACA+GGG + chr1_1:3097608-3097627 None:intergenic 20.0%
!! CAACAAAAATTTAACGATTA+AGG + chr1_1:3097873-3097892 None:intergenic 20.0%
!!! ACTTTAGATTATATCAGTTT+TGG - chr1_1:3097903-3097922 Msa0001390:CDS 20.0%
!! TATGTTATCATTATACTGTT+TGG - chr1_1:3098013-3098032 Msa0001390:CDS 20.0%
!! ATGTTATCATTATACTGTTT+GGG - chr1_1:3098014-3098033 Msa0001390:CDS 20.0%
!!! ATCAATTTTGGATCTTTTAT+TGG - chr1_1:3098121-3098140 Msa0001390:five_prime_UTR 20.0%
!!! CAGTTAAAAGAGAGTTTTTT+AGG + chr1_1:3096140-3096159 None:intergenic 25.0%
!! CTAAAAAACTCTCTTTTAAC+TGG - chr1_1:3096138-3096157 Msa0001390:three_prime_UTR 25.0%
! GTTAGTTAGTTAGTTAAAAG+AGG + chr1_1:3096292-3096311 None:intergenic 25.0%
!!! TAAAGAATGTTTGTTGATTC+AGG - chr1_1:3096312-3096331 Msa0001390:three_prime_UTR 25.0%
! TAGGGATTGAAAATTAAGTA+TGG + chr1_1:3096521-3096540 None:intergenic 25.0%
!!! AGTAATAATGGTTTTGGTTA+GGG + chr1_1:3096539-3096558 None:intergenic 25.0%
!!! TAGTAATAATGGTTTTGGTT+AGG + chr1_1:3096540-3096559 None:intergenic 25.0%
!! ACAAGTAGTAATAATGGTTT+TGG + chr1_1:3096545-3096564 None:intergenic 25.0%
! TTGTCTACAAGTAGTAATAA+TGG + chr1_1:3096551-3096570 None:intergenic 25.0%
!!! TTTCAAGAGTTTTAAGAACT+CGG + chr1_1:3096808-3096827 None:intergenic 25.0%
! AGTTCTTAAAACTCTTGAAA+TGG - chr1_1:3096808-3096827 Msa0001390:intron 25.0%
! GAGTAATATAAGACATACAA+AGG + chr1_1:3096906-3096925 None:intergenic 25.0%
! TTGTATGTCTTATATTACTC+AGG - chr1_1:3096906-3096925 Msa0001390:intron 25.0%
!! ATTTATTAATCGGGTTTGTT+TGG - chr1_1:3097101-3097120 Msa0001390:intron 25.0%
! ATTTGAACATACCTTCATAT+AGG + chr1_1:3097257-3097276 None:intergenic 25.0%
!!! AAATGGGTTTGATATTTTTC+AGG + chr1_1:3097400-3097419 None:intergenic 25.0%
! CTTGATATATTCACTGAAAT+GGG + chr1_1:3097416-3097435 None:intergenic 25.0%
!! GACTATTTACTATTGATGAT+TGG - chr1_1:3097570-3097589 Msa0001390:CDS 25.0%
! GAAATACTACTAATTCAAAC+AGG + chr1_1:3097609-3097628 None:intergenic 25.0%
!! CGTTAAATTTTTGTTGCATA+TGG - chr1_1:3097877-3097896 Msa0001390:CDS 25.0%
!!! ATTATATCAGTTTTGGACTA+TGG - chr1_1:3097910-3097929 Msa0001390:CDS 25.0%
! AGAAATTATATTCTGGATTC+TGG + chr1_1:3097977-3097996 None:intergenic 25.0%
! AACAGCAAGAAATTATATTC+TGG + chr1_1:3097984-3098003 None:intergenic 25.0%
! TGTTATCATTATACTGTTTG+GGG - chr1_1:3098015-3098034 Msa0001390:CDS 25.0%
! AAAAGATCCAAAATTGATCT+AGG + chr1_1:3098119-3098138 None:intergenic 25.0%
!!! CAGTTAAAAGAGAGTTTTTT+AGG + chr1_1:3096140-3096159 None:intergenic 25.0%
!! CTAAAAAACTCTCTTTTAAC+TGG - chr1_1:3096138-3096157 Msa0001390:three_prime_UTR 25.0%
! GTTAGTTAGTTAGTTAAAAG+AGG + chr1_1:3096292-3096311 None:intergenic 25.0%
!!! TAAAGAATGTTTGTTGATTC+AGG - chr1_1:3096312-3096331 Msa0001390:three_prime_UTR 25.0%
! TAGGGATTGAAAATTAAGTA+TGG + chr1_1:3096521-3096540 None:intergenic 25.0%
!!! AGTAATAATGGTTTTGGTTA+GGG + chr1_1:3096539-3096558 None:intergenic 25.0%
!!! TAGTAATAATGGTTTTGGTT+AGG + chr1_1:3096540-3096559 None:intergenic 25.0%
!! ACAAGTAGTAATAATGGTTT+TGG + chr1_1:3096545-3096564 None:intergenic 25.0%
! TTGTCTACAAGTAGTAATAA+TGG + chr1_1:3096551-3096570 None:intergenic 25.0%
!!! TTTCAAGAGTTTTAAGAACT+CGG + chr1_1:3096808-3096827 None:intergenic 25.0%
! AGTTCTTAAAACTCTTGAAA+TGG - chr1_1:3096808-3096827 Msa0001390:intron 25.0%
! GAGTAATATAAGACATACAA+AGG + chr1_1:3096906-3096925 None:intergenic 25.0%
! TTGTATGTCTTATATTACTC+AGG - chr1_1:3096906-3096925 Msa0001390:intron 25.0%
!! ATTTATTAATCGGGTTTGTT+TGG - chr1_1:3097101-3097120 Msa0001390:intron 25.0%
! ATTTGAACATACCTTCATAT+AGG + chr1_1:3097257-3097276 None:intergenic 25.0%
!!! AAATGGGTTTGATATTTTTC+AGG + chr1_1:3097400-3097419 None:intergenic 25.0%
! CTTGATATATTCACTGAAAT+GGG + chr1_1:3097416-3097435 None:intergenic 25.0%
!! GACTATTTACTATTGATGAT+TGG - chr1_1:3097570-3097589 Msa0001390:CDS 25.0%
! GAAATACTACTAATTCAAAC+AGG + chr1_1:3097609-3097628 None:intergenic 25.0%
!! CGTTAAATTTTTGTTGCATA+TGG - chr1_1:3097877-3097896 Msa0001390:CDS 25.0%
!!! ATTATATCAGTTTTGGACTA+TGG - chr1_1:3097910-3097929 Msa0001390:CDS 25.0%
! AGAAATTATATTCTGGATTC+TGG + chr1_1:3097977-3097996 None:intergenic 25.0%
! AACAGCAAGAAATTATATTC+TGG + chr1_1:3097984-3098003 None:intergenic 25.0%
! TGTTATCATTATACTGTTTG+GGG - chr1_1:3098015-3098034 Msa0001390:CDS 25.0%
! AAAAGATCCAAAATTGATCT+AGG + chr1_1:3098119-3098138 None:intergenic 25.0%
!!! AGTTTTTTAGGGTTTCTCTT+GGG + chr1_1:3096128-3096147 None:intergenic 30.0%
GTTAGTTAGTTAAAAGAGGA+TGG + chr1_1:3096288-3096307 None:intergenic 30.0%
AAATTCAAGAGAAGAAGAGA+GGG - chr1_1:3096385-3096404 Msa0001390:three_prime_UTR 30.0%
TGAAAATTAAGTATGGAGTG+TGG + chr1_1:3096514-3096533 None:intergenic 30.0%
! CTACACTTTTCATTTCTATG+TGG - chr1_1:3096872-3096891 Msa0001390:intron 30.0%
TATCAATGTCACAAGAATAG+AGG + chr1_1:3097082-3097101 None:intergenic 30.0%
GCTTGATATATTCACTGAAA+TGG + chr1_1:3097417-3097436 None:intergenic 30.0%
AATCGAGGAACTATACAAAA+AGG - chr1_1:3097456-3097475 Msa0001390:intron 30.0%
AGGAAATTCAAGCTAAACAA+TGG + chr1_1:3097853-3097872 None:intergenic 30.0%
GTTATCATTATACTGTTTGG+GGG - chr1_1:3098016-3098035 Msa0001390:CDS 30.0%
!!! AGTTTTTTAGGGTTTCTCTT+GGG + chr1_1:3096128-3096147 None:intergenic 30.0%
GTTAGTTAGTTAAAAGAGGA+TGG + chr1_1:3096288-3096307 None:intergenic 30.0%
AAATTCAAGAGAAGAAGAGA+GGG - chr1_1:3096385-3096404 Msa0001390:three_prime_UTR 30.0%
TGAAAATTAAGTATGGAGTG+TGG + chr1_1:3096514-3096533 None:intergenic 30.0%
! CTACACTTTTCATTTCTATG+TGG - chr1_1:3096872-3096891 Msa0001390:intron 30.0%
TATCAATGTCACAAGAATAG+AGG + chr1_1:3097082-3097101 None:intergenic 30.0%
GCTTGATATATTCACTGAAA+TGG + chr1_1:3097417-3097436 None:intergenic 30.0%
AATCGAGGAACTATACAAAA+AGG - chr1_1:3097456-3097475 Msa0001390:intron 30.0%
AGGAAATTCAAGCTAAACAA+TGG + chr1_1:3097853-3097872 None:intergenic 30.0%
GTTATCATTATACTGTTTGG+GGG - chr1_1:3098016-3098035 Msa0001390:CDS 30.0%
!!! GAGTTTTTTAGGGTTTCTCT+TGG + chr1_1:3096129-3096148 None:intergenic 35.0%
GAAATTCAAGAGAAGAAGAG+AGG - chr1_1:3096384-3096403 Msa0001390:three_prime_UTR 35.0%
TTGAGTAATCAAACGAACTC+TGG + chr1_1:3096428-3096447 None:intergenic 35.0%
ACTCAAGACGCTAACAAATA+CGG - chr1_1:3096442-3096461 Msa0001390:three_prime_UTR 35.0%
TTACCAATCGAACAACGTAA+CGG + chr1_1:3096480-3096499 None:intergenic 35.0%
AAGAACAATATCACCAGCAA+TGG + chr1_1:3096607-3096626 None:intergenic 35.0%
GAAATGGATGATCAGTATGA+AGG - chr1_1:3096824-3096843 Msa0001390:intron 35.0%
TCTTATATTACTCAGGCAAC+CGG - chr1_1:3096913-3096932 Msa0001390:intron 35.0%
TCTTAACAAGACCAACATCA+AGG + chr1_1:3096990-3097009 None:intergenic 35.0%
!! TTCACCGGAAGTACATTTTT+GGG - chr1_1:3097218-3097237 Msa0001390:CDS 35.0%
AAAAAAGTCTCAAACTCCAC+AGG + chr1_1:3097329-3097348 None:intergenic 35.0%
TTCAGTGAATATATCAAGCG+TGG - chr1_1:3097418-3097437 Msa0001390:CDS 35.0%
!! TTCTCAGGCTTTTTGATTGA+GGG + chr1_1:3097505-3097524 None:intergenic 35.0%
!! AACACAAGAGGTATCACATT+AGG - chr1_1:3097539-3097558 Msa0001390:CDS 35.0%
! TACTATTGATGATTGGCAAG+TGG - chr1_1:3097577-3097596 Msa0001390:intron 35.0%
!! TTTTGGACTATGGATTATCC+TGG - chr1_1:3097920-3097939 Msa0001390:CDS 35.0%
AAATCGAAACAAGTCTATCC+AGG + chr1_1:3097941-3097960 None:intergenic 35.0%
ATTTGTATTTCCAACCTAGC+TGG - chr1_1:3098149-3098168 Msa0001390:five_prime_UTR 35.0%
!!! GAGTTTTTTAGGGTTTCTCT+TGG + chr1_1:3096129-3096148 None:intergenic 35.0%
GAAATTCAAGAGAAGAAGAG+AGG - chr1_1:3096384-3096403 Msa0001390:three_prime_UTR 35.0%
TTGAGTAATCAAACGAACTC+TGG + chr1_1:3096428-3096447 None:intergenic 35.0%
ACTCAAGACGCTAACAAATA+CGG - chr1_1:3096442-3096461 Msa0001390:three_prime_UTR 35.0%
TTACCAATCGAACAACGTAA+CGG + chr1_1:3096480-3096499 None:intergenic 35.0%
AAGAACAATATCACCAGCAA+TGG + chr1_1:3096607-3096626 None:intergenic 35.0%
GAAATGGATGATCAGTATGA+AGG - chr1_1:3096824-3096843 Msa0001390:intron 35.0%
TCTTATATTACTCAGGCAAC+CGG - chr1_1:3096913-3096932 Msa0001390:intron 35.0%
TCTTAACAAGACCAACATCA+AGG + chr1_1:3096990-3097009 None:intergenic 35.0%
!! TTCACCGGAAGTACATTTTT+GGG - chr1_1:3097218-3097237 Msa0001390:CDS 35.0%
AAAAAAGTCTCAAACTCCAC+AGG + chr1_1:3097329-3097348 None:intergenic 35.0%
TTCAGTGAATATATCAAGCG+TGG - chr1_1:3097418-3097437 Msa0001390:CDS 35.0%
!! TTCTCAGGCTTTTTGATTGA+GGG + chr1_1:3097505-3097524 None:intergenic 35.0%
!! AACACAAGAGGTATCACATT+AGG - chr1_1:3097539-3097558 Msa0001390:CDS 35.0%
! TACTATTGATGATTGGCAAG+TGG - chr1_1:3097577-3097596 Msa0001390:intron 35.0%
!! TTTTGGACTATGGATTATCC+TGG - chr1_1:3097920-3097939 Msa0001390:CDS 35.0%
AAATCGAAACAAGTCTATCC+AGG + chr1_1:3097941-3097960 None:intergenic 35.0%
ATTTGTATTTCCAACCTAGC+TGG - chr1_1:3098149-3098168 Msa0001390:five_prime_UTR 35.0%
! GTTGATTCAGGCATTTGTGA+AGG - chr1_1:3096324-3096343 Msa0001390:three_prime_UTR 40.0%
TAATCAAACGAACTCTGGCT+CGG + chr1_1:3096423-3096442 None:intergenic 40.0%
CGAACAACGTAACGGTATTT+GGG + chr1_1:3096472-3096491 None:intergenic 40.0%
TCGAACAACGTAACGGTATT+TGG + chr1_1:3096473-3096492 None:intergenic 40.0%
ATACCGTTACGTTGTTCGAT+TGG - chr1_1:3096474-3096493 Msa0001390:three_prime_UTR 40.0%
CATAGTTAGTAAGGCCTACA+TGG + chr1_1:3096668-3096687 None:intergenic 40.0%
TACCTGCAGCATAGTTAGTA+AGG + chr1_1:3096677-3096696 None:intergenic 40.0%
ATGTTACCAGCTTATTGCAC+TGG - chr1_1:3096767-3096786 Msa0001390:intron 40.0%
!! TTATTGCACTGGTCTCCTTT+TGG - chr1_1:3096778-3096797 Msa0001390:intron 40.0%
TCAGTATGAAGGCAATGTTG+AGG - chr1_1:3096835-3096854 Msa0001390:intron 40.0%
TTCCACAGAATAATCCTCTC+CGG + chr1_1:3096935-3096954 None:intergenic 40.0%
CAAGAATAGAGGACATAGGT+GGG + chr1_1:3097071-3097090 None:intergenic 40.0%
ACAAGAATAGAGGACATAGG+TGG + chr1_1:3097072-3097091 None:intergenic 40.0%
GTCACAAGAATAGAGGACAT+AGG + chr1_1:3097075-3097094 None:intergenic 40.0%
ATATTCCTCACAGCGACAAA+AGG - chr1_1:3097152-3097171 Msa0001390:CDS 40.0%
!!! AAGGTTTGCTGGTTTTGACA+AGG - chr1_1:3097171-3097190 Msa0001390:CDS 40.0%
GAAAAAAGAGCTTGATGCTG+AGG - chr1_1:3097195-3097214 Msa0001390:CDS 40.0%
!! GTTCACCGGAAGTACATTTT+TGG - chr1_1:3097217-3097236 Msa0001390:CDS 40.0%
!! TCACCGGAAGTACATTTTTG+GGG - chr1_1:3097219-3097238 Msa0001390:CDS 40.0%
ACATGTTGCTGCCTATATGA+AGG - chr1_1:3097243-3097262 Msa0001390:intron 40.0%
! TTTGTAAGGCATTCATCCTG+TGG - chr1_1:3097310-3097329 Msa0001390:intron 40.0%
TATCAAGCGTGGAATTGAAG+CGG - chr1_1:3097429-3097448 Msa0001390:intron 40.0%
!! CTTCTCAGGCTTTTTGATTG+AGG + chr1_1:3097506-3097525 None:intergenic 40.0%
TGATACCTCTTGTGTTCCTT+TGG + chr1_1:3097535-3097554 None:intergenic 40.0%
CTTTGTCTTTCTTTCCTCGT+AGG + chr1_1:3097744-3097763 None:intergenic 40.0%
CGAGGAAAGAAAGACAAAGT+TGG - chr1_1:3097745-3097764 Msa0001390:CDS 40.0%
AGGATGACGATGAGTGAAAT+TGG - chr1_1:3097813-3097832 Msa0001390:intron 40.0%
GGATGACGATGAGTGAAATT+GGG - chr1_1:3097814-3097833 Msa0001390:intron 40.0%
ACGATGAGTGAAATTGGGTT+GGG - chr1_1:3097819-3097838 Msa0001390:intron 40.0%
AACTGTCGGAATTTGTGAGT+TGG - chr1_1:3098093-3098112 Msa0001390:intron 40.0%
!! GAGTTGGCCTAGATCAATTT+TGG - chr1_1:3098109-3098128 Msa0001390:intron 40.0%
! TTGTGGTGGAATGAGATTGT+AGG + chr1_1:3098175-3098194 None:intergenic 40.0%
TACAATCTCATTCCACCACA+AGG - chr1_1:3098174-3098193 Msa0001390:five_prime_UTR 40.0%
! GTTGATTCAGGCATTTGTGA+AGG - chr1_1:3096324-3096343 Msa0001390:three_prime_UTR 40.0%
TAATCAAACGAACTCTGGCT+CGG + chr1_1:3096423-3096442 None:intergenic 40.0%
CGAACAACGTAACGGTATTT+GGG + chr1_1:3096472-3096491 None:intergenic 40.0%
TCGAACAACGTAACGGTATT+TGG + chr1_1:3096473-3096492 None:intergenic 40.0%
ATACCGTTACGTTGTTCGAT+TGG - chr1_1:3096474-3096493 Msa0001390:three_prime_UTR 40.0%
CATAGTTAGTAAGGCCTACA+TGG + chr1_1:3096668-3096687 None:intergenic 40.0%
TACCTGCAGCATAGTTAGTA+AGG + chr1_1:3096677-3096696 None:intergenic 40.0%
ATGTTACCAGCTTATTGCAC+TGG - chr1_1:3096767-3096786 Msa0001390:intron 40.0%
!! TTATTGCACTGGTCTCCTTT+TGG - chr1_1:3096778-3096797 Msa0001390:intron 40.0%
TCAGTATGAAGGCAATGTTG+AGG - chr1_1:3096835-3096854 Msa0001390:intron 40.0%
TTCCACAGAATAATCCTCTC+CGG + chr1_1:3096935-3096954 None:intergenic 40.0%
CAAGAATAGAGGACATAGGT+GGG + chr1_1:3097071-3097090 None:intergenic 40.0%
ACAAGAATAGAGGACATAGG+TGG + chr1_1:3097072-3097091 None:intergenic 40.0%
GTCACAAGAATAGAGGACAT+AGG + chr1_1:3097075-3097094 None:intergenic 40.0%
ATATTCCTCACAGCGACAAA+AGG - chr1_1:3097152-3097171 Msa0001390:CDS 40.0%
!!! AAGGTTTGCTGGTTTTGACA+AGG - chr1_1:3097171-3097190 Msa0001390:CDS 40.0%
GAAAAAAGAGCTTGATGCTG+AGG - chr1_1:3097195-3097214 Msa0001390:CDS 40.0%
!! GTTCACCGGAAGTACATTTT+TGG - chr1_1:3097217-3097236 Msa0001390:CDS 40.0%
!! TCACCGGAAGTACATTTTTG+GGG - chr1_1:3097219-3097238 Msa0001390:CDS 40.0%
ACATGTTGCTGCCTATATGA+AGG - chr1_1:3097243-3097262 Msa0001390:intron 40.0%
! TTTGTAAGGCATTCATCCTG+TGG - chr1_1:3097310-3097329 Msa0001390:intron 40.0%
TATCAAGCGTGGAATTGAAG+CGG - chr1_1:3097429-3097448 Msa0001390:intron 40.0%
!! CTTCTCAGGCTTTTTGATTG+AGG + chr1_1:3097506-3097525 None:intergenic 40.0%
TGATACCTCTTGTGTTCCTT+TGG + chr1_1:3097535-3097554 None:intergenic 40.0%
CTTTGTCTTTCTTTCCTCGT+AGG + chr1_1:3097744-3097763 None:intergenic 40.0%
CGAGGAAAGAAAGACAAAGT+TGG - chr1_1:3097745-3097764 Msa0001390:CDS 40.0%
AGGATGACGATGAGTGAAAT+TGG - chr1_1:3097813-3097832 Msa0001390:intron 40.0%
GGATGACGATGAGTGAAATT+GGG - chr1_1:3097814-3097833 Msa0001390:intron 40.0%
ACGATGAGTGAAATTGGGTT+GGG - chr1_1:3097819-3097838 Msa0001390:intron 40.0%
AACTGTCGGAATTTGTGAGT+TGG - chr1_1:3098093-3098112 Msa0001390:intron 40.0%
!! GAGTTGGCCTAGATCAATTT+TGG - chr1_1:3098109-3098128 Msa0001390:intron 40.0%
! TTGTGGTGGAATGAGATTGT+AGG + chr1_1:3098175-3098194 None:intergenic 40.0%
TACAATCTCATTCCACCACA+AGG - chr1_1:3098174-3098193 Msa0001390:five_prime_UTR 40.0%
AGTGTCCACATAAAGTGACG+AGG - chr1_1:3096085-3096104 Msa0001390:three_prime_UTR 45.0%
GTACCATTCCGATTCCGAAT+GGG + chr1_1:3096243-3096262 None:intergenic 45.0%
ATTGTCTCTGCTACCATTGC+TGG - chr1_1:3096591-3096610 Msa0001390:CDS 45.0%
AGTTAGTAAGGCCTACATGG+AGG + chr1_1:3096665-3096684 None:intergenic 45.0%
AACCGGAGAGGATTATTCTG+TGG - chr1_1:3096930-3096949 Msa0001390:intron 45.0%
! AATCGGGTTTGTTTGGCTTC+AGG - chr1_1:3097108-3097127 Msa0001390:intron 45.0%
! ATCGGGTTTGTTTGGCTTCA+GGG - chr1_1:3097109-3097128 Msa0001390:intron 45.0%
!! CACCGGAAGTACATTTTTGG+GGG - chr1_1:3097220-3097239 Msa0001390:CDS 45.0%
GTCCCCCAAAAATGTACTTC+CGG + chr1_1:3097225-3097244 None:intergenic 45.0%
AATTGAAGCGGATGGAATCG+AGG - chr1_1:3097441-3097460 Msa0001390:intron 45.0%
TACCTCTTGTGTTCCTTTGG+TGG + chr1_1:3097532-3097551 None:intergenic 45.0%
!! TTCTTCAGGTTGTACCTGCT+CGG + chr1_1:3097716-3097735 None:intergenic 45.0%
GTCATCCTCATCATCATCTC+CGG + chr1_1:3097801-3097820 None:intergenic 45.0%
GACGATGAGTGAAATTGGGT+TGG - chr1_1:3097818-3097837 Msa0001390:intron 45.0%
AATGAGATTGTAGGCCAGCT+AGG + chr1_1:3098166-3098185 None:intergenic 45.0%
TCAGAAATCACCTTGCCTTG+TGG + chr1_1:3098192-3098211 None:intergenic 45.0%
AGTGTCCACATAAAGTGACG+AGG - chr1_1:3096085-3096104 Msa0001390:three_prime_UTR 45.0%
GTACCATTCCGATTCCGAAT+GGG + chr1_1:3096243-3096262 None:intergenic 45.0%
ATTGTCTCTGCTACCATTGC+TGG - chr1_1:3096591-3096610 Msa0001390:CDS 45.0%
AGTTAGTAAGGCCTACATGG+AGG + chr1_1:3096665-3096684 None:intergenic 45.0%
AACCGGAGAGGATTATTCTG+TGG - chr1_1:3096930-3096949 Msa0001390:intron 45.0%
! AATCGGGTTTGTTTGGCTTC+AGG - chr1_1:3097108-3097127 Msa0001390:intron 45.0%
! ATCGGGTTTGTTTGGCTTCA+GGG - chr1_1:3097109-3097128 Msa0001390:intron 45.0%
!! CACCGGAAGTACATTTTTGG+GGG - chr1_1:3097220-3097239 Msa0001390:CDS 45.0%
GTCCCCCAAAAATGTACTTC+CGG + chr1_1:3097225-3097244 None:intergenic 45.0%
AATTGAAGCGGATGGAATCG+AGG - chr1_1:3097441-3097460 Msa0001390:intron 45.0%
TACCTCTTGTGTTCCTTTGG+TGG + chr1_1:3097532-3097551 None:intergenic 45.0%
!! TTCTTCAGGTTGTACCTGCT+CGG + chr1_1:3097716-3097735 None:intergenic 45.0%
GTCATCCTCATCATCATCTC+CGG + chr1_1:3097801-3097820 None:intergenic 45.0%
GACGATGAGTGAAATTGGGT+TGG - chr1_1:3097818-3097837 Msa0001390:intron 45.0%
AATGAGATTGTAGGCCAGCT+AGG + chr1_1:3098166-3098185 None:intergenic 45.0%
TCAGAAATCACCTTGCCTTG+TGG + chr1_1:3098192-3098211 None:intergenic 45.0%
!!! CTGCTGCTTTTCTCCAATGC+AGG + chr1_1:3096065-3096084 None:intergenic 50.0%
CGTACCATTCCGATTCCGAA+TGG + chr1_1:3096244-3096263 None:intergenic 50.0%
GCACATGAGCTTCCTCACTT+TGG - chr1_1:3096639-3096658 Msa0001390:intron 50.0%
GGCCTTACTAACTATGCTGC+AGG - chr1_1:3096672-3096691 Msa0001390:intron 50.0%
AGGAGACCAGTGCAATAAGC+TGG + chr1_1:3096776-3096795 None:intergenic 50.0%
TAAGAACTCGGCGAGCCAAA+AGG + chr1_1:3096796-3096815 None:intergenic 50.0%
TATTACTCAGGCAACCGGAG+AGG - chr1_1:3096918-3096937 Msa0001390:intron 50.0%
! ACATCAAGGAGAGCACGGAA+TGG + chr1_1:3096976-3096995 None:intergenic 50.0%
TTCCGTGCTCTCCTTGATGT+TGG - chr1_1:3096976-3096995 Msa0001390:intron 50.0%
GACCAACATCAAGGAGAGCA+CGG + chr1_1:3096981-3097000 None:intergenic 50.0%
!! GGTCTTGTTAAGACCACCAC+CGG - chr1_1:3096997-3097016 Msa0001390:intron 50.0%
TTAAGACCACCACCGGAAAC+CGG - chr1_1:3097004-3097023 Msa0001390:intron 50.0%
! TGTTTGGCTTCAGGGAGCTT+TGG - chr1_1:3097117-3097136 Msa0001390:intron 50.0%
! GCAAACCTTTTGTCGCTGTG+AGG + chr1_1:3097160-3097179 None:intergenic 50.0%
CACAGCGACAAAAGGTTTGC+TGG - chr1_1:3097160-3097179 Msa0001390:CDS 50.0%
AGCTTGATGCTGAGGTTCAC+CGG - chr1_1:3097203-3097222 Msa0001390:CDS 50.0%
AAGCGTGGAATTGAAGCGGA+TGG - chr1_1:3097433-3097452 Msa0001390:intron 50.0%
GATTGAGGGATCTGCACGAA+TGG + chr1_1:3097491-3097510 None:intergenic 50.0%
AGCCACCAAAGGAACACAAG+AGG - chr1_1:3097527-3097546 Msa0001390:CDS 50.0%
CAAGCTCTCAATTCTGCAGC+CGG - chr1_1:3097779-3097798 Msa0001390:CDS 50.0%
AGATTGTAGGCCAGCTAGGT+TGG + chr1_1:3098162-3098181 None:intergenic 50.0%
TCTCATTCCACCACAAGGCA+AGG - chr1_1:3098179-3098198 Msa0001390:five_prime_UTR 50.0%
GAAATCACCTTGCCTTGTGG+TGG + chr1_1:3098189-3098208 None:intergenic 50.0%
!!! CTGCTGCTTTTCTCCAATGC+AGG + chr1_1:3096065-3096084 None:intergenic 50.0%
CGTACCATTCCGATTCCGAA+TGG + chr1_1:3096244-3096263 None:intergenic 50.0%
GCACATGAGCTTCCTCACTT+TGG - chr1_1:3096639-3096658 Msa0001390:intron 50.0%
GGCCTTACTAACTATGCTGC+AGG - chr1_1:3096672-3096691 Msa0001390:intron 50.0%
AGGAGACCAGTGCAATAAGC+TGG + chr1_1:3096776-3096795 None:intergenic 50.0%
TAAGAACTCGGCGAGCCAAA+AGG + chr1_1:3096796-3096815 None:intergenic 50.0%
TATTACTCAGGCAACCGGAG+AGG - chr1_1:3096918-3096937 Msa0001390:intron 50.0%
! ACATCAAGGAGAGCACGGAA+TGG + chr1_1:3096976-3096995 None:intergenic 50.0%
TTCCGTGCTCTCCTTGATGT+TGG - chr1_1:3096976-3096995 Msa0001390:intron 50.0%
GACCAACATCAAGGAGAGCA+CGG + chr1_1:3096981-3097000 None:intergenic 50.0%
!! GGTCTTGTTAAGACCACCAC+CGG - chr1_1:3096997-3097016 Msa0001390:intron 50.0%
TTAAGACCACCACCGGAAAC+CGG - chr1_1:3097004-3097023 Msa0001390:intron 50.0%
! TGTTTGGCTTCAGGGAGCTT+TGG - chr1_1:3097117-3097136 Msa0001390:intron 50.0%
! GCAAACCTTTTGTCGCTGTG+AGG + chr1_1:3097160-3097179 None:intergenic 50.0%
CACAGCGACAAAAGGTTTGC+TGG - chr1_1:3097160-3097179 Msa0001390:CDS 50.0%
AGCTTGATGCTGAGGTTCAC+CGG - chr1_1:3097203-3097222 Msa0001390:CDS 50.0%
AAGCGTGGAATTGAAGCGGA+TGG - chr1_1:3097433-3097452 Msa0001390:intron 50.0%
GATTGAGGGATCTGCACGAA+TGG + chr1_1:3097491-3097510 None:intergenic 50.0%
AGCCACCAAAGGAACACAAG+AGG - chr1_1:3097527-3097546 Msa0001390:CDS 50.0%
CAAGCTCTCAATTCTGCAGC+CGG - chr1_1:3097779-3097798 Msa0001390:CDS 50.0%
AGATTGTAGGCCAGCTAGGT+TGG + chr1_1:3098162-3098181 None:intergenic 50.0%
TCTCATTCCACCACAAGGCA+AGG - chr1_1:3098179-3098198 Msa0001390:five_prime_UTR 50.0%
GAAATCACCTTGCCTTGTGG+TGG + chr1_1:3098189-3098208 None:intergenic 50.0%
! ACGGGCCTCGTCACTTTATG+TGG + chr1_1:3096093-3096112 None:intergenic 55.0%
CATAAAGTGACGAGGCCCGT+AGG - chr1_1:3096093-3096112 Msa0001390:three_prime_UTR 55.0%
TCTTGGGCTGCCTTTGCCTA+CGG + chr1_1:3096112-3096131 None:intergenic 55.0%
CCAATCACCCACCACCCATT+CGG - chr1_1:3096226-3096245 Msa0001390:three_prime_UTR 55.0%
ACCCACCACCCATTCGGAAT+CGG - chr1_1:3096232-3096251 Msa0001390:three_prime_UTR 55.0%
TCCGATTCCGAATGGGTGGT+GGG + chr1_1:3096236-3096255 None:intergenic 55.0%
TTCCGATTCCGAATGGGTGG+TGG + chr1_1:3096237-3096256 None:intergenic 55.0%
CCATTCCGATTCCGAATGGG+TGG + chr1_1:3096240-3096259 None:intergenic 55.0%
CCACCCATTCGGAATCGGAA+TGG - chr1_1:3096237-3096256 Msa0001390:three_prime_UTR 55.0%
CCTACATGGAGGCCAAAGTG+AGG + chr1_1:3096654-3096673 None:intergenic 55.0%
CCTCACTTTGGCCTCCATGT+AGG - chr1_1:3096651-3096670 Msa0001390:intron 55.0%
TAAGACCACCACCGGAAACC+GGG - chr1_1:3097005-3097024 Msa0001390:intron 55.0%
TGCACCAAAGACCCGGTTTC+CGG + chr1_1:3097019-3097038 None:intergenic 55.0%
CCTTGAGTGCACCAAAGACC+CGG + chr1_1:3097026-3097045 None:intergenic 55.0%
!! TGGCTTCAGGGAGCTTTGGA+CGG - chr1_1:3097121-3097140 Msa0001390:intron 55.0%
! TCCTTTGGTGGCTGCTTCTC+AGG + chr1_1:3097520-3097539 None:intergenic 55.0%
GCGTTGTTTGTCTTCCGAGC+AGG - chr1_1:3097699-3097718 Msa0001390:CDS 55.0%
CCTCGTAGGTGAGCTTCTTC+AGG + chr1_1:3097730-3097749 None:intergenic 55.0%
CCTGAAGAAGCTCACCTACG+AGG - chr1_1:3097727-3097746 Msa0001390:CDS 55.0%
! TGCAGCCGGAGATGATGATG+AGG - chr1_1:3097793-3097812 Msa0001390:intron 55.0%
! ACGGGCCTCGTCACTTTATG+TGG + chr1_1:3096093-3096112 None:intergenic 55.0%
CATAAAGTGACGAGGCCCGT+AGG - chr1_1:3096093-3096112 Msa0001390:three_prime_UTR 55.0%
TCTTGGGCTGCCTTTGCCTA+CGG + chr1_1:3096112-3096131 None:intergenic 55.0%
CCAATCACCCACCACCCATT+CGG - chr1_1:3096226-3096245 Msa0001390:three_prime_UTR 55.0%
ACCCACCACCCATTCGGAAT+CGG - chr1_1:3096232-3096251 Msa0001390:three_prime_UTR 55.0%
TCCGATTCCGAATGGGTGGT+GGG + chr1_1:3096236-3096255 None:intergenic 55.0%
TTCCGATTCCGAATGGGTGG+TGG + chr1_1:3096237-3096256 None:intergenic 55.0%
CCATTCCGATTCCGAATGGG+TGG + chr1_1:3096240-3096259 None:intergenic 55.0%
CCACCCATTCGGAATCGGAA+TGG - chr1_1:3096237-3096256 Msa0001390:three_prime_UTR 55.0%
CCTACATGGAGGCCAAAGTG+AGG + chr1_1:3096654-3096673 None:intergenic 55.0%
CCTCACTTTGGCCTCCATGT+AGG - chr1_1:3096651-3096670 Msa0001390:intron 55.0%
TAAGACCACCACCGGAAACC+GGG - chr1_1:3097005-3097024 Msa0001390:intron 55.0%
TGCACCAAAGACCCGGTTTC+CGG + chr1_1:3097019-3097038 None:intergenic 55.0%
CCTTGAGTGCACCAAAGACC+CGG + chr1_1:3097026-3097045 None:intergenic 55.0%
!! TGGCTTCAGGGAGCTTTGGA+CGG - chr1_1:3097121-3097140 Msa0001390:intron 55.0%
! TCCTTTGGTGGCTGCTTCTC+AGG + chr1_1:3097520-3097539 None:intergenic 55.0%
GCGTTGTTTGTCTTCCGAGC+AGG - chr1_1:3097699-3097718 Msa0001390:CDS 55.0%
CCTCGTAGGTGAGCTTCTTC+AGG + chr1_1:3097730-3097749 None:intergenic 55.0%
CCTGAAGAAGCTCACCTACG+AGG - chr1_1:3097727-3097746 Msa0001390:CDS 55.0%
! TGCAGCCGGAGATGATGATG+AGG - chr1_1:3097793-3097812 Msa0001390:intron 55.0%
CTTGGGCTGCCTTTGCCTAC+GGG + chr1_1:3096111-3096130 None:intergenic 60.0%
TTCTCTGCACCAGACAGCCG+CGG - chr1_1:3096186-3096205 Msa0001390:three_prime_UTR 60.0%
!! CCGAATGGGTGGTGGGTGAT+TGG + chr1_1:3096229-3096248 None:intergenic 60.0%
! CTGTGGAACCAGCTGACTCC+AGG - chr1_1:3096947-3096966 Msa0001390:intron 60.0%
! TGGAACCAGCTGACTCCAGG+AGG - chr1_1:3096950-3096969 Msa0001390:intron 60.0%
AATGGCCTCCTGGAGTCAGC+TGG + chr1_1:3096958-3096977 None:intergenic 60.0%
AAAGACCCGGTTTCCGGTGG+TGG + chr1_1:3097013-3097032 None:intergenic 60.0%
ACCACCGGAAACCGGGTCTT+TGG - chr1_1:3097012-3097031 Msa0001390:intron 60.0%
ACCAAAGACCCGGTTTCCGG+TGG + chr1_1:3097016-3097035 None:intergenic 60.0%
! CCGGGTCTTTGGTGCACTCA+AGG - chr1_1:3097023-3097042 Msa0001390:intron 60.0%
!! GGCTTCAGGGAGCTTTGGAC+GGG - chr1_1:3097122-3097141 Msa0001390:intron 60.0%
!! GCTTCAGGGAGCTTTGGACG+GGG - chr1_1:3097123-3097142 Msa0001390:intron 60.0%
!! CTTCAGGGAGCTTTGGACGG+GGG - chr1_1:3097124-3097143 Msa0001390:intron 60.0%
GCCTGAGAAGCAGCCACCAA+AGG - chr1_1:3097516-3097535 Msa0001390:CDS 60.0%
CTTGGGCTGCCTTTGCCTAC+GGG + chr1_1:3096111-3096130 None:intergenic 60.0%
TTCTCTGCACCAGACAGCCG+CGG - chr1_1:3096186-3096205 Msa0001390:three_prime_UTR 60.0%
!! CCGAATGGGTGGTGGGTGAT+TGG + chr1_1:3096229-3096248 None:intergenic 60.0%
! CTGTGGAACCAGCTGACTCC+AGG - chr1_1:3096947-3096966 Msa0001390:intron 60.0%
! TGGAACCAGCTGACTCCAGG+AGG - chr1_1:3096950-3096969 Msa0001390:intron 60.0%
AATGGCCTCCTGGAGTCAGC+TGG + chr1_1:3096958-3096977 None:intergenic 60.0%
AAAGACCCGGTTTCCGGTGG+TGG + chr1_1:3097013-3097032 None:intergenic 60.0%
ACCACCGGAAACCGGGTCTT+TGG - chr1_1:3097012-3097031 Msa0001390:intron 60.0%
ACCAAAGACCCGGTTTCCGG+TGG + chr1_1:3097016-3097035 None:intergenic 60.0%
! CCGGGTCTTTGGTGCACTCA+AGG - chr1_1:3097023-3097042 Msa0001390:intron 60.0%
!! GGCTTCAGGGAGCTTTGGAC+GGG - chr1_1:3097122-3097141 Msa0001390:intron 60.0%
!! GCTTCAGGGAGCTTTGGACG+GGG - chr1_1:3097123-3097142 Msa0001390:intron 60.0%
!! CTTCAGGGAGCTTTGGACGG+GGG - chr1_1:3097124-3097143 Msa0001390:intron 60.0%
GCCTGAGAAGCAGCCACCAA+AGG - chr1_1:3097516-3097535 Msa0001390:CDS 60.0%
GTGACGAGGCCCGTAGGCAA+AGG - chr1_1:3096099-3096118 Msa0001390:three_prime_UTR 65.0%
! GAGAGCACGGAATGGCCTCC+TGG + chr1_1:3096968-3096987 None:intergenic 65.0%
GTGACGAGGCCCGTAGGCAA+AGG - chr1_1:3096099-3096118 Msa0001390:three_prime_UTR 65.0%
! GAGAGCACGGAATGGCCTCC+TGG + chr1_1:3096968-3096987 None:intergenic 65.0%
CACCAGACAGCCGCGGTCGA+AGG - chr1_1:3096193-3096212 Msa0001390:three_prime_UTR 70.0%
CACCTTCGACCGCGGCTGTC+TGG + chr1_1:3096198-3096217 None:intergenic 70.0%
GACAGCCGCGGTCGAAGGTG+CGG - chr1_1:3096198-3096217 Msa0001390:three_prime_UTR 70.0%
! ACAGCCGCGGTCGAAGGTGC+GGG - chr1_1:3096199-3096218 Msa0001390:three_prime_UTR 70.0%
ACTGCCCGCACCTTCGACCG+CGG + chr1_1:3096206-3096225 None:intergenic 70.0%
!! GGGAGCTTTGGACGGGGGTC+TGG - chr1_1:3097129-3097148 Msa0001390:intron 70.0%
CACCAGACAGCCGCGGTCGA+AGG - chr1_1:3096193-3096212 Msa0001390:three_prime_UTR 70.0%
CACCTTCGACCGCGGCTGTC+TGG + chr1_1:3096198-3096217 None:intergenic 70.0%
GACAGCCGCGGTCGAAGGTG+CGG - chr1_1:3096198-3096217 Msa0001390:three_prime_UTR 70.0%
! ACAGCCGCGGTCGAAGGTGC+GGG - chr1_1:3096199-3096218 Msa0001390:three_prime_UTR 70.0%
ACTGCCCGCACCTTCGACCG+CGG + chr1_1:3096206-3096225 None:intergenic 70.0%
!! GGGAGCTTTGGACGGGGGTC+TGG - chr1_1:3097129-3097148 Msa0001390:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 3096052 3098319 3096052 ID=Msa0001390;Name=Msa0001390
chr1_1 mRNA 3096052 3098319 3096052 ID=Msa0001390-mRNA-1;Parent=Msa0001390;Name=Msa0001390-mRNA-1;_AED=0.10;_eAED=0.10;_QI=204|0.83|0.85|1|1|1|7|490|231
chr1_1 exon 3096052 3096650 3096052 ID=Msa0001390-mRNA-1:exon:811;Parent=Msa0001390-mRNA-1
chr1_1 exon 3097144 3097241 3097144 ID=Msa0001390-mRNA-1:exon:810;Parent=Msa0001390-mRNA-1
chr1_1 exon 3097327 3097443 3097327 ID=Msa0001390-mRNA-1:exon:809;Parent=Msa0001390-mRNA-1
chr1_1 exon 3097515 3097594 3097515 ID=Msa0001390-mRNA-1:exon:808;Parent=Msa0001390-mRNA-1
chr1_1 exon 3097678 3097804 3097678 ID=Msa0001390-mRNA-1:exon:807;Parent=Msa0001390-mRNA-1
chr1_1 exon 3097876 3098037 3097876 ID=Msa0001390-mRNA-1:exon:806;Parent=Msa0001390-mRNA-1
chr1_1 exon 3098113 3098319 3098113 ID=Msa0001390-mRNA-1:exon:805;Parent=Msa0001390-mRNA-1
chr1_1 five_prime_UTR 3098116 3098319 3098116 ID=Msa0001390-mRNA-1:five_prime_utr;Parent=Msa0001390-mRNA-1
chr1_1 CDS 3098113 3098115 3098113 ID=Msa0001390-mRNA-1:cds;Parent=Msa0001390-mRNA-1
chr1_1 CDS 3097876 3098037 3097876 ID=Msa0001390-mRNA-1:cds;Parent=Msa0001390-mRNA-1
chr1_1 CDS 3097678 3097804 3097678 ID=Msa0001390-mRNA-1:cds;Parent=Msa0001390-mRNA-1
chr1_1 CDS 3097515 3097594 3097515 ID=Msa0001390-mRNA-1:cds;Parent=Msa0001390-mRNA-1
chr1_1 CDS 3097327 3097443 3097327 ID=Msa0001390-mRNA-1:cds;Parent=Msa0001390-mRNA-1
chr1_1 CDS 3097144 3097241 3097144 ID=Msa0001390-mRNA-1:cds;Parent=Msa0001390-mRNA-1
chr1_1 CDS 3096542 3096650 3096542 ID=Msa0001390-mRNA-1:cds;Parent=Msa0001390-mRNA-1
chr1_1 three_prime_UTR 3096052 3096541 3096052 ID=Msa0001390-mRNA-1:three_prime_utr;Parent=Msa0001390-mRNA-1
Gene Sequence

>Msa0001390

ATGGCATTTGTGAAGGCTCAGAAATCAAATGCGTACTTCAAGCGATTTCAAGTGAAATTCAAGAGAAGAAGAGAGGGTAAGACTGATTACCGAGCCAGAGTTCGTTTGATTACTCAAGACGCTAACAAATACGGCACTCCCAAATACCGTTACGTTGTTCGATTGACAAACAAAGACATTGTCTGTCAAATTGTCTCTGCTACCATTGCTGGTGATATTGTTCTTGCTGCTGCTTACGCACATGAGCTTCCTCACTTTGGCCTCCATGTAGGCCTTACTAACTATGCTGCAGCTTATTGCACTGGTCTCCTTTTGGCTCGCCGAGTTCTTAAAACTCTTGAAATGGATGATCAGTATGAAGGCAATGTTGAGGCAACCGGAGAGGATTATTCTGTGGAACCAGCTGACTCCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTGTTAAGACCACCACCGGAAACCGGGTCTTTGGTGCACTCAAGGGAGCTTTGGACGGGGGTCTGGATATTCCTCACAGCGACAAAAGGTTTGCTGGTTTTGACAAGGAGAAAAAAGAGCTTGATGCTGAGGTTCACCGGAAGTACAACCTGAAGAAGCTCACCTACGAGGAAAGAAAGACAAAGTTGGTCTCTCGCTTGCAAGCTCTCAATTCTGCAGCCGGAGATGATGATGAGGATGACGATGAGTGA
Protein sequence

>Msa0001390

MAFVKAQKSNAYFKRFQVKFKRRREGKTDYRARVRLITQDANKYGTPKYRYVVRLTNKDIVCQIVSATIAGDIVLAAAYAHELPHFGLHVGLTNYAAAYCTGLLLARRVLKTLEMDDQYEGNVEATGEDYSVEPADSRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYNLKKLTYEERKTKLVSRLQALNSAAGDDDEDDDE*