AlfalfaGEDB | Msa1126690

M. sativa cultivar zhongmu-4 / Msa1126690

KEGG: K02989
GO: GO:0000028 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0015935 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00177.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126690	XP_013450311.1	96.694	121	3	1	1	121	1	120	4.00e-80	244

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126690	sp\|O65731\|RS5_CICAR	88.991	109	12	0	13	121	3	111	5.71e-67	204

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126690	I3SKT5	96.694	121	3	1	1	121	1	120	1.91e-80	244

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001390	Msa1126690	0.814672	1.367334e-51	-8.615850e-47
Msa0001760	Msa1126690	0.835613	1.515267e-56	-8.615850e-47
Msa0003330	Msa1126690	0.829705	4.432694e-55	-8.615850e-47
Msa0021290	Msa1126690	0.805788	1.127192e-49	-8.615850e-47
Msa0021320	Msa1126690	0.813225	2.850655e-51	-8.615850e-47
Msa0027590	Msa1126690	0.832515	9.047058e-56	-8.615850e-47
Msa0040220	Msa1126690	0.845742	3.359729e-59	-8.615850e-47
Msa0042510	Msa1126690	0.829941	3.884236e-55	-8.615850e-47
Msa0071640	Msa1126690	0.824281	8.789755e-54	-8.615850e-47
Msa0079560	Msa1126690	0.840291	9.500804e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126690	MtrunA17_Chr7g0268431	96.694	121	3	1	1	121	1	120	3.68e-84	244
Msa1126690	MtrunA17_Chr1g0176261	91.057	123	7	3	1	121	33	153	2.75e-74	221

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1126690	AT2G37270.1	78.814	118	24	1	5	121	4	121	7.64e-66	199
Msa1126690	AT2G37270.2	78.814	118	24	1	5	121	4	121	7.64e-66	199
Msa1126690	AT3G11940.1	82.857	105	18	0	17	121	17	121	1.30e-64	196
Msa1126690	AT3G11940.2	82.857	105	18	0	17	121	17	121	1.30e-64	196

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Find 40 sgRNAs with CRISPR-Local

Find 124 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACGGAAAGAAACTCA+TGG	0.660227	7_3:-78249165	Msa1126690:CDS
AACTTCGACTGGGATAGCGA+CGG	0.675722	7_3:+78249803	None:intergenic
AAGCTACCTTGTAGATAGTG+CGG	0.671061	7_3:+78249924	None:intergenic
AAGTCAAGCTCTTCAACCAA+TGG	0.580728	7_3:-78249764	Msa1126690:CDS
ACATATGTTCCTCACACTGC+TGG	0.521105	7_3:-78249269	Msa1126690:CDS
ACCTTGTAGATAGTGCGGCG+CGG	0.782232	7_3:+78249929	None:intergenic
ACTAACTCTCTCATGATGCA+CGG	0.667607	7_3:-78249191	Msa1126690:CDS
AGATTACCGATCTGTCTCTT+GGG	0.440013	7_3:-78249325	Msa1126690:CDS
AGATTGGGATCAACTTCGAC+TGG	0.475242	7_3:+78249792	None:intergenic
AGCGACGGTTTCATCAGCCA+TGG	0.634868	7_3:+78249818	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCGTGAATAATTCAATGATT+AGG	+	chr7_3:78249166-78249185	None:intergenic	30.0%
TCGTAGAATCTGAATCTAAT+AGG	-	chr7_3:78249336-78249355	Msa1126690:intron	30.0%
CATTAAGGACCTATTTAGAT+TGG	+	chr7_3:78249572-78249591	None:intergenic	30.0%
CAATCTAAATAGGTCCTTAA+TGG	-	chr7_3:78249570-78249589	Msa1126690:intron	30.0%
GGGAAAATAACAAAATGCAA+AGG	+	chr7_3:78249969-78249988	None:intergenic	30.0%
GCGTGAATAATTCAATGATT+AGG	+	chr7_3:78249166-78249185	None:intergenic	30.0%
TCGTAGAATCTGAATCTAAT+AGG	-	chr7_3:78249336-78249355	Msa1126690:intron	30.0%
CATTAAGGACCTATTTAGAT+TGG	+	chr7_3:78249572-78249591	None:intergenic	30.0%
CAATCTAAATAGGTCCTTAA+TGG	-	chr7_3:78249570-78249589	Msa1126690:intron	30.0%
GGGAAAATAACAAAATGCAA+AGG	+	chr7_3:78249969-78249988	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	78249031	78249997	78249031	ID=Msa1126690;Name=Msa1126690
chr7_3	mRNA	78249031	78249997	78249031	ID=Msa1126690-mRNA-1;Parent=Msa1126690;Name=Msa1126690-mRNA-1;_AED=0.05;_eAED=0.05;_QI=69\|1\|0.66\|1\|0.5\|0.33\|3\|0\|135
chr7_3	exon	78249031	78249345	78249031	ID=Msa1126690-mRNA-1:exon:21799;Parent=Msa1126690-mRNA-1
chr7_3	exon	78249746	78249840	78249746	ID=Msa1126690-mRNA-1:exon:21798;Parent=Msa1126690-mRNA-1
chr7_3	exon	78249931	78249997	78249931	ID=Msa1126690-mRNA-1:exon:21797;Parent=Msa1126690-mRNA-1
chr7_3	five_prime_UTR	78249931	78249997	78249931	ID=Msa1126690-mRNA-1:five_prime_utr;Parent=Msa1126690-mRNA-1
chr7_3	five_prime_UTR	78249839	78249840	78249839	ID=Msa1126690-mRNA-1:five_prime_utr;Parent=Msa1126690-mRNA-1
chr7_3	CDS	78249746	78249838	78249746	ID=Msa1126690-mRNA-1:cds;Parent=Msa1126690-mRNA-1
chr7_3	CDS	78249031	78249345	78249031	ID=Msa1126690-mRNA-1:cds;Parent=Msa1126690-mRNA-1

Gene Sequence

>Msa1126690

ATGGCTGATGAAACCGTCGCTATCCCAGTCGAAGTTGATCCCAATCTAAACGAAGTCAAGCTCTTCAACCAATGGAGCTTCGACGACGTTCAGATTACCGATCTGTCTCTTGGGGATTACATTGGAGCAAGAGGATCCAAACATGCAACATATGTTCCTCACACTGCTGGTAGGTACTCAAAGAAGCGCTTCAGGAAAGCTCAGTGTCCCATTGTTGAGAGGCTCACTAACTCTCTCATGATGCACGGTAGAAACAACGGAAAGAAACTCATGGCTGTTAGGATCATTAAGCATGCCATGGAGATCATTCACTTGCTAACTGACCAGAACCCGATTCAAGTTATCGTTGATGCTGTCGTCAACAGGTATGATGATGCCTTTGCATTTTGTTATTTTCCCTATGATTGA

Protein sequence

>Msa1126690

MADETVAIPVEVDPNLNEVKLFNQWSFDDVQITDLSLGDYIGARGSKHATYVPHTAGRYSKKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNRYDDAFAFCYFPYD*