Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126690 | XP_013450311.1 | 96.694 | 121 | 3 | 1 | 1 | 121 | 1 | 120 | 4.00e-80 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126690 | sp|O65731|RS5_CICAR | 88.991 | 109 | 12 | 0 | 13 | 121 | 3 | 111 | 5.71e-67 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126690 | I3SKT5 | 96.694 | 121 | 3 | 1 | 1 | 121 | 1 | 120 | 1.91e-80 | 244 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001390 | Msa1126690 | 0.814672 | 1.367334e-51 | -8.615850e-47 |
| Msa0001760 | Msa1126690 | 0.835613 | 1.515267e-56 | -8.615850e-47 |
| Msa0003330 | Msa1126690 | 0.829705 | 4.432694e-55 | -8.615850e-47 |
| Msa0021290 | Msa1126690 | 0.805788 | 1.127192e-49 | -8.615850e-47 |
| Msa0021320 | Msa1126690 | 0.813225 | 2.850655e-51 | -8.615850e-47 |
| Msa0027590 | Msa1126690 | 0.832515 | 9.047058e-56 | -8.615850e-47 |
| Msa0040220 | Msa1126690 | 0.845742 | 3.359729e-59 | -8.615850e-47 |
| Msa0042510 | Msa1126690 | 0.829941 | 3.884236e-55 | -8.615850e-47 |
| Msa0071640 | Msa1126690 | 0.824281 | 8.789755e-54 | -8.615850e-47 |
| Msa0079560 | Msa1126690 | 0.840291 | 9.500804e-58 | -8.615850e-47 |
| Msa0086160 | Msa1126690 | 0.863087 | 3.197022e-64 | -8.615850e-47 |
| Msa0087910 | Msa1126690 | 0.868588 | 5.839176e-66 | -8.615850e-47 |
| Msa0089540 | Msa1126690 | 0.808124 | 3.612692e-50 | -8.615850e-47 |
| Msa0114600 | Msa1126690 | 0.848654 | 5.341936e-60 | -8.615850e-47 |
| Msa0116600 | Msa1126690 | 0.822860 | 1.889664e-53 | -8.615850e-47 |
| Msa0116690 | Msa1126690 | 0.824841 | 6.487890e-54 | -8.615850e-47 |
| Msa0602900 | Msa1126690 | 0.891282 | 4.577915e-74 | -8.615850e-47 |
| Msa0605890 | Msa1126690 | 0.838567 | 2.664149e-57 | -8.615850e-47 |
| Msa0609120 | Msa1126690 | 0.831917 | 1.272091e-55 | -8.615850e-47 |
| Msa0619230 | Msa1126690 | 0.886132 | 4.459801e-72 | -8.615850e-47 |
| Msa0621190 | Msa1126690 | 0.833963 | 3.942105e-56 | -8.615850e-47 |
| Msa0629280 | Msa1126690 | 0.818192 | 2.228761e-52 | -8.615850e-47 |
| Msa0643960 | Msa1126690 | 0.891556 | 3.567353e-74 | -8.615850e-47 |
| Msa0653060 | Msa1126690 | 0.825629 | 4.222637e-54 | -8.615850e-47 |
| Msa0656450 | Msa1126690 | 0.844801 | 6.036774e-59 | -8.615850e-47 |
| Msa0663400 | Msa1126690 | 0.826454 | 2.688486e-54 | -8.615850e-47 |
| Msa0667110 | Msa1126690 | 0.809436 | 1.893918e-50 | -8.615850e-47 |
| Msa0686550 | Msa1126690 | 0.825294 | 5.068939e-54 | -8.615850e-47 |
| Msa0691760 | Msa1126690 | 0.809680 | 1.679002e-50 | -8.615850e-47 |
| Msa0694400 | Msa1126690 | 0.871834 | 5.052326e-67 | -8.615850e-47 |
| Msa0704860 | Msa1126690 | 0.858349 | 8.757580e-63 | -8.615850e-47 |
| Msa0708630 | Msa1126690 | 0.904634 | 9.999053e-80 | -8.615850e-47 |
| Msa0718560 | Msa1126690 | 0.838562 | 2.672140e-57 | -8.615850e-47 |
| Msa0741510 | Msa1126690 | 0.813864 | 2.062991e-51 | -8.615850e-47 |
| Msa0748350 | Msa1126690 | 0.815270 | 1.007285e-51 | -8.615850e-47 |
| Msa0758420 | Msa1126690 | 0.805996 | 1.019330e-49 | -8.615850e-47 |
| Msa0759660 | Msa1126690 | 0.802574 | 5.259830e-49 | -8.615850e-47 |
| Msa0767280 | Msa1126690 | 0.818153 | 2.273749e-52 | -8.615850e-47 |
| Msa0790450 | Msa1126690 | 0.895469 | 9.306950e-76 | -8.615850e-47 |
| Msa0123290 | Msa1126690 | 0.835486 | 1.631801e-56 | -8.615850e-47 |
| Msa0127230 | Msa1126690 | 0.833262 | 5.900704e-56 | -8.615850e-47 |
| Msa0128330 | Msa1126690 | 0.873415 | 1.497377e-67 | -8.615850e-47 |
| Msa0132460 | Msa1126690 | 0.903886 | 2.181365e-79 | -8.615850e-47 |
| Msa0134580 | Msa1126690 | 0.871441 | 6.818784e-67 | -8.615850e-47 |
| Msa0167860 | Msa1126690 | 0.881017 | 3.404411e-70 | -8.615850e-47 |
| Msa0168320 | Msa1126690 | 0.807552 | 4.779699e-50 | -8.615850e-47 |
| Msa0169710 | Msa1126690 | 0.811172 | 7.995604e-51 | -8.615850e-47 |
| Msa0174580 | Msa1126690 | 0.866713 | 2.331554e-65 | -8.615850e-47 |
| Msa0182050 | Msa1126690 | 0.903781 | 2.431327e-79 | -8.615850e-47 |
| Msa0182100 | Msa1126690 | 0.900698 | 5.645141e-78 | -8.615850e-47 |
| Msa0183840 | Msa1126690 | 0.843884 | 1.064655e-58 | -8.615850e-47 |
| Msa0188740 | Msa1126690 | 0.880930 | 3.658231e-70 | -8.615850e-47 |
| Msa0191450 | Msa1126690 | 0.817832 | 2.687325e-52 | -8.615850e-47 |
| Msa0191550 | Msa1126690 | 0.847434 | 1.159027e-59 | -8.615850e-47 |
| Msa0192050 | Msa1126690 | 0.800235 | 1.585086e-48 | -8.615850e-47 |
| Msa0192300 | Msa1126690 | 0.899157 | 2.617496e-77 | -8.615850e-47 |
| Msa0194940 | Msa1126690 | 0.852759 | 3.737774e-61 | -8.615850e-47 |
| Msa0195030 | Msa1126690 | 0.812257 | 4.644551e-51 | -8.615850e-47 |
| Msa0237180 | Msa1126690 | 0.823718 | 1.191405e-53 | -8.615850e-47 |
| Msa0371490 | Msa1126690 | 0.885898 | 5.463653e-72 | -8.615850e-47 |
| Msa0373350 | Msa1126690 | 0.810236 | 1.274107e-50 | -8.615850e-47 |
| Msa0376850 | Msa1126690 | 0.814430 | 1.546629e-51 | -8.615850e-47 |
| Msa0377370 | Msa1126690 | 0.833160 | 6.256195e-56 | -8.615850e-47 |
| Msa0377520 | Msa1126690 | 0.841807 | 3.797632e-58 | -8.615850e-47 |
| Msa0380590 | Msa1126690 | 0.804578 | 2.020095e-49 | -8.615850e-47 |
| Msa0382670 | Msa1126690 | 0.801196 | 1.009213e-48 | -8.615850e-47 |
| Msa0385030 | Msa1126690 | 0.807132 | 5.870012e-50 | -8.615850e-47 |
| Msa0388520 | Msa1126690 | 0.841112 | 5.789181e-58 | -8.615850e-47 |
| Msa0419710 | Msa1126690 | 0.825378 | 4.844497e-54 | -8.615850e-47 |
| Msa0426090 | Msa1126690 | 0.850989 | 1.188639e-60 | -8.615850e-47 |
| Msa0426250 | Msa1126690 | 0.874694 | 5.527518e-68 | -8.615850e-47 |
| Msa0433060 | Msa1126690 | 0.810065 | 1.387150e-50 | -8.615850e-47 |
| Msa0450150 | Msa1126690 | 0.863028 | 3.334552e-64 | -8.615850e-47 |
| Msa0467250 | Msa1126690 | 0.802237 | 6.171835e-49 | -8.615850e-47 |
| Msa0469430 | Msa1126690 | 0.813394 | 2.617441e-51 | -8.615850e-47 |
| Msa0472480 | Msa1126690 | 0.843098 | 1.726438e-58 | -8.615850e-47 |
| Msa0475810 | Msa1126690 | 0.813657 | 2.290800e-51 | -8.615850e-47 |
| Msa0481520 | Msa1126690 | 0.809555 | 1.785831e-50 | -8.615850e-47 |
| Msa0482560 | Msa1126690 | 0.838700 | 2.460791e-57 | -8.615850e-47 |
| Msa1001620 | Msa1126690 | 0.814802 | 1.279756e-51 | -8.615850e-47 |
| Msa1025200 | Msa1126690 | 0.861665 | 8.743173e-64 | -8.615850e-47 |
| Msa1025220 | Msa1126690 | 0.862559 | 4.652084e-64 | -8.615850e-47 |
| Msa1047020 | Msa1126690 | 0.827501 | 1.510945e-54 | -8.615850e-47 |
| Msa1050100 | Msa1126690 | 0.827695 | 1.357079e-54 | -8.615850e-47 |
| Msa1068660 | Msa1126690 | 0.867184 | 1.649979e-65 | -8.615850e-47 |
| Msa1082050 | Msa1126690 | 0.868285 | 7.316429e-66 | -8.615850e-47 |
| Msa1085850 | Msa1126690 | 0.839899 | 1.202137e-57 | -8.615850e-47 |
| Msa0239420 | Msa1126690 | 0.813103 | 3.032171e-51 | -8.615850e-47 |
| Msa0270160 | Msa1126690 | 0.891869 | 2.677273e-74 | -8.615850e-47 |
| Msa0274940 | Msa1126690 | 0.826011 | 3.427745e-54 | -8.615850e-47 |
| Msa0277600 | Msa1126690 | 0.887616 | 1.220085e-72 | -8.615850e-47 |
| Msa0281330 | Msa1126690 | 0.823129 | 1.635123e-53 | -8.615850e-47 |
| Msa0281370 | Msa1126690 | 0.840424 | 8.767304e-58 | -8.615850e-47 |
| Msa0301250 | Msa1126690 | 0.890929 | 6.316950e-74 | -8.615850e-47 |
| Msa0313060 | Msa1126690 | 0.914109 | 2.818457e-84 | -8.615850e-47 |
| Msa0315430 | Msa1126690 | 0.892684 | 1.264706e-74 | -8.615850e-47 |
| Msa0315660 | Msa1126690 | 0.824704 | 6.988477e-54 | -8.615850e-47 |
| Msa1109310 | Msa1126690 | 0.811892 | 5.576827e-51 | -8.615850e-47 |
| Msa1124980 | Msa1126690 | 0.808005 | 3.830922e-50 | -8.615850e-47 |
| Msa1126690 | Msa1144610 | 0.808000 | 3.840391e-50 | -8.615850e-47 |
| Msa1126690 | Msa1156830 | 0.838738 | 2.406076e-57 | -8.615850e-47 |
| Msa1126690 | Msa1163320 | 0.800245 | 1.577621e-48 | -8.615850e-47 |
| Msa1126690 | Msa1167360 | 0.820372 | 7.100577e-53 | -8.615850e-47 |
| Msa1126690 | Msa1203560 | 0.800461 | 1.425633e-48 | -8.615850e-47 |
| Msa1126690 | Msa1218610 | 0.808495 | 3.012222e-50 | -8.615850e-47 |
| Msa1126690 | Msa1227350 | 0.834931 | 2.253443e-56 | -8.615850e-47 |
| Msa1126690 | Msa1235950 | 0.825069 | 5.730701e-54 | -8.615850e-47 |
| Msa1126690 | Msa1235980 | 0.830641 | 2.619577e-55 | -8.615850e-47 |
| Msa1126690 | Msa1237040 | 0.881366 | 2.548746e-70 | -8.615850e-47 |
| Msa1126690 | Msa1245270 | 0.811549 | 6.623699e-51 | -8.615850e-47 |
| Msa1126690 | Msa1255830 | 0.870678 | 1.217450e-66 | -8.615850e-47 |
| Msa1126690 | Msa1255850 | 0.883849 | 3.166605e-71 | -8.615850e-47 |
| Msa1126690 | Msa1258540 | 0.817277 | 3.585085e-52 | -8.615850e-47 |
| Msa1126690 | Msa1269250 | -0.802940 | 4.418906e-49 | -8.615850e-47 |
| Msa1126690 | Msa1278130 | 0.841438 | 4.751317e-58 | -8.615850e-47 |
| Msa1126690 | Msa1284060 | 0.825781 | 3.888112e-54 | -8.615850e-47 |
| Msa1126690 | Msa1284800 | 0.835361 | 1.754614e-56 | -8.615850e-47 |
| Msa1126690 | Msa1296090 | 0.883689 | 3.628786e-71 | -8.615850e-47 |
| Msa1126690 | Msa1317390 | 0.872683 | 2.634626e-67 | -8.615850e-47 |
| Msa1126690 | Msa1330730 | 0.824777 | 6.716818e-54 | -8.615850e-47 |
| Msa1126690 | Msa1341780 | 0.857499 | 1.566044e-62 | -8.615850e-47 |
| Msa1126690 | Msa1351020 | 0.885437 | 8.136015e-72 | -8.615850e-47 |
| Msa1126690 | Msa1351910 | 0.812600 | 3.906822e-51 | -8.615850e-47 |
| Msa1126690 | Msa1367540 | 0.856903 | 2.348069e-62 | -8.615850e-47 |
| Msa1126690 | Msa1385480 | 0.872549 | 2.919610e-67 | -8.615850e-47 |
| Msa1126690 | Msa1387750 | 0.835059 | 2.091561e-56 | -8.615850e-47 |
| Msa1126690 | Msa1390760 | 0.888789 | 4.323801e-73 | -8.615850e-47 |
| Msa1126690 | Msa1403520 | 0.857365 | 1.715119e-62 | -8.615850e-47 |
| Msa1126690 | Msa1407550 | 0.854297 | 1.351787e-61 | -8.615850e-47 |
| Msa1126690 | Msa1413570 | 0.850837 | 1.311082e-60 | -8.615850e-47 |
| Msa1126690 | Msa1423050 | 0.811822 | 5.776366e-51 | -8.615850e-47 |
| Msa1126690 | Msa1424570 | 0.897748 | 1.040055e-76 | -8.615850e-47 |
| Msa1126690 | Msa1432310 | 0.862437 | 5.071068e-64 | -8.615850e-47 |
| Msa1126690 | Msa1446410 | 0.840404 | 8.874322e-58 | -8.615850e-47 |
| Msa1126690 | Msa1446510 | 0.869462 | 3.040365e-66 | -8.615850e-47 |
| Msa1126690 | Msa1450560 | 0.897677 | 1.115244e-76 | -8.615850e-47 |
| Msa1126690 | Msa1463570 | 0.865217 | 6.932174e-65 | -8.615850e-47 |
| Msa1126690 | Msa1465700 | 0.826031 | 3.390154e-54 | -8.615850e-47 |
| Msa1126690 | Msa1465890 | 0.804385 | 2.215887e-49 | -8.615850e-47 |
| Msa0500420 | Msa1126690 | 0.810157 | 1.325293e-50 | -8.615850e-47 |
| Msa0511760 | Msa1126690 | 0.866552 | 2.623662e-65 | -8.615850e-47 |
| Msa0515110 | Msa1126690 | 0.806634 | 7.477526e-50 | -8.615850e-47 |
| Msa0516830 | Msa1126690 | 0.814996 | 1.159110e-51 | -8.615850e-47 |
| Msa0517480 | Msa1126690 | 0.815861 | 7.441021e-52 | -8.615850e-47 |
| Msa0521730 | Msa1126690 | 0.829628 | 4.627649e-55 | -8.615850e-47 |
| Msa0524340 | Msa1126690 | 0.806933 | 6.466753e-50 | -8.615850e-47 |
| Msa0524450 | Msa1126690 | 0.812967 | 3.247730e-51 | -8.615850e-47 |
| Msa0524680 | Msa1126690 | 0.810069 | 1.384553e-50 | -8.615850e-47 |
| Msa0529900 | Msa1126690 | 0.831689 | 1.447988e-55 | -8.615850e-47 |
| Msa0547920 | Msa1126690 | 0.891761 | 2.956575e-74 | -8.615850e-47 |
| Msa0563540 | Msa1126690 | 0.831497 | 1.614178e-55 | -8.615850e-47 |
| Msa0568380 | Msa1126690 | 0.801385 | 9.232314e-49 | -8.615850e-47 |
| Msa0573550 | Msa1126690 | 0.917944 | 2.861194e-86 | -8.615850e-47 |
| Msa0574780 | Msa1126690 | 0.857374 | 1.704856e-62 | -8.615850e-47 |
| Msa0578010 | Msa1126690 | 0.852004 | 6.135172e-61 | -8.615850e-47 |
| Msa0585570 | Msa1126690 | 0.816978 | 4.184049e-52 | -8.615850e-47 |
| Msa0589160 | Msa1126690 | 0.834418 | 3.032118e-56 | -8.615850e-47 |
| Msa0597240 | Msa1126690 | 0.849645 | 2.831467e-60 | -8.615850e-47 |
| Msa0846900 | Msa1126690 | 0.830350 | 3.086044e-55 | -8.615850e-47 |
| Msa0880050 | Msa1126690 | 0.812943 | 3.287188e-51 | -8.615850e-47 |
| Msa0902730 | Msa1126690 | 0.804351 | 2.252334e-49 | -8.615850e-47 |
| Msa0929680 | Msa1126690 | 0.812325 | 4.486459e-51 | -8.615850e-47 |
| Msa0929700 | Msa1126690 | 0.896769 | 2.684594e-76 | -8.615850e-47 |
| Msa0930100 | Msa1126690 | 0.902893 | 6.079569e-79 | -8.615850e-47 |
| Msa0930360 | Msa1126690 | 0.863025 | 3.340532e-64 | -8.615850e-47 |
| Msa0930790 | Msa1126690 | 0.840573 | 8.016479e-58 | -8.615850e-47 |
| Msa0930890 | Msa1126690 | 0.846326 | 2.330035e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126690 | MtrunA17_Chr7g0268431 | 96.694 | 121 | 3 | 1 | 1 | 121 | 1 | 120 | 3.68e-84 | 244 |
| Msa1126690 | MtrunA17_Chr1g0176261 | 91.057 | 123 | 7 | 3 | 1 | 121 | 33 | 153 | 2.75e-74 | 221 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1126690 | AT2G37270.1 | 78.814 | 118 | 24 | 1 | 5 | 121 | 4 | 121 | 7.64e-66 | 199 |
| Msa1126690 | AT2G37270.2 | 78.814 | 118 | 24 | 1 | 5 | 121 | 4 | 121 | 7.64e-66 | 199 |
| Msa1126690 | AT3G11940.1 | 82.857 | 105 | 18 | 0 | 17 | 121 | 17 | 121 | 1.30e-64 | 196 |
| Msa1126690 | AT3G11940.2 | 82.857 | 105 | 18 | 0 | 17 | 121 | 17 | 121 | 1.30e-64 | 196 |
Find 40 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCAATATATATCAATCAT+AGG | 0.343232 | 7_3:+78249019 | None:intergenic |
| GAGCTTGACTTCGTTTAGAT+TGG | 0.348914 | 7_3:+78249776 | None:intergenic |
| CGATAACTTGAATCGGGTTC+TGG | 0.350343 | 7_3:+78249093 | None:intergenic |
| ATGGAGCTTCGACGACGTTC+AGG | 0.358685 | 7_3:-78249745 | Msa1126690:intron |
| AGGAACATATGTTGCATGTT+TGG | 0.372138 | 7_3:+78249280 | None:intergenic |
| GGTACTCAAAGAAGCGCTTC+AGG | 0.411900 | 7_3:-78249244 | Msa1126690:CDS |
| CGCGGCCGTCAGCTTCTCCC+TGG | 0.412002 | 7_3:+78249947 | None:intergenic |
| AGCTTGACTTCGTTTAGATT+GGG | 0.412691 | 7_3:+78249777 | None:intergenic |
| GAAAGAAACTCATGGCTGTT+AGG | 0.417495 | 7_3:-78249157 | Msa1126690:CDS |
| CAGATTACCGATCTGTCTCT+TGG | 0.434208 | 7_3:-78249326 | Msa1126690:CDS |
| AGATTACCGATCTGTCTCTT+GGG | 0.440013 | 7_3:-78249325 | Msa1126690:CDS |
| TCGTTGATGCTGTCGTCAAC+AGG | 0.441734 | 7_3:-78249073 | Msa1126690:CDS |
| GCATCAACGATAACTTGAAT+CGG | 0.455711 | 7_3:+78249086 | None:intergenic |
| AGATTGGGATCAACTTCGAC+TGG | 0.475242 | 7_3:+78249792 | None:intergenic |
| CTGTCTCTTGGGGATTACAT+TGG | 0.493111 | 7_3:-78249314 | Msa1126690:CDS |
| GTCAATATATATCAATCATA+GGG | 0.507828 | 7_3:+78249020 | None:intergenic |
| ACATATGTTCCTCACACTGC+TGG | 0.521105 | 7_3:-78249269 | Msa1126690:CDS |
| GGGGATTACATTGGAGCAAG+AGG | 0.537561 | 7_3:-78249305 | Msa1126690:CDS |
| GAACGTCGTCGAAGCTCCAT+TGG | 0.540472 | 7_3:+78249748 | None:intergenic |
| TTAGTGAGCCTCTCAACAAT+GGG | 0.543323 | 7_3:+78249209 | None:intergenic |
| GTTAGTGAGCCTCTCAACAA+TGG | 0.562680 | 7_3:+78249208 | None:intergenic |
| CATCAACGATAACTTGAATC+GGG | 0.564821 | 7_3:+78249087 | None:intergenic |
| AAGTCAAGCTCTTCAACCAA+TGG | 0.580728 | 7_3:-78249764 | Msa1126690:CDS |
| CTCAGTGTCCCATTGTTGAG+AGG | 0.591866 | 7_3:-78249217 | Msa1126690:CDS |
| GATTGGGATCAACTTCGACT+GGG | 0.607523 | 7_3:+78249793 | None:intergenic |
| GCCGCGCCGCACTATCTACA+AGG | 0.608102 | 7_3:-78249930 | Msa1126690:intron |
| GATTACCGATCTGTCTCTTG+GGG | 0.611070 | 7_3:-78249324 | Msa1126690:CDS |
| GTAATCCCCAAGAGACAGAT+CGG | 0.613626 | 7_3:+78249319 | None:intergenic |
| TAGGATCATTAAGCATGCCA+TGG | 0.620948 | 7_3:-78249138 | Msa1126690:CDS |
| GGGAAAATAACAAAATGCAA+AGG | 0.622403 | 7_3:+78249040 | None:intergenic |
| AGCGACGGTTTCATCAGCCA+TGG | 0.634868 | 7_3:+78249818 | None:intergenic |
| TAGCAAGTGAATGATCTCCA+TGG | 0.641966 | 7_3:+78249121 | None:intergenic |
| ATGTTCCTCACACTGCTGGT+AGG | 0.649707 | 7_3:-78249265 | Msa1126690:CDS |
| AAACAACGGAAAGAAACTCA+TGG | 0.660227 | 7_3:-78249165 | Msa1126690:CDS |
| ATGATGCACGGTAGAAACAA+CGG | 0.667166 | 7_3:-78249179 | Msa1126690:CDS |
| ACTAACTCTCTCATGATGCA+CGG | 0.667607 | 7_3:-78249191 | Msa1126690:CDS |
| AAGCTACCTTGTAGATAGTG+CGG | 0.671061 | 7_3:+78249924 | None:intergenic |
| AACTTCGACTGGGATAGCGA+CGG | 0.675722 | 7_3:+78249803 | None:intergenic |
| GAGTACCTACCAGCAGTGTG+AGG | 0.691601 | 7_3:+78249260 | None:intergenic |
| ACCTTGTAGATAGTGCGGCG+CGG | 0.782232 | 7_3:+78249929 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GCTATTTTCATAATTTATAT+TGG | - | chr7_3:78249450-78249469 | Msa1126690:intron | 15.0% |
| !! | TAAAATTAAAAAACCCATTA+AGG | + | chr7_3:78249587-78249606 | None:intergenic | 15.0% |
| !!! | GCTATTTTCATAATTTATAT+TGG | - | chr7_3:78249450-78249469 | Msa1126690:intron | 15.0% |
| !! | TAAAATTAAAAAACCCATTA+AGG | + | chr7_3:78249587-78249606 | None:intergenic | 15.0% |
| ! | TAATTCAATGATTAGGGTTA+GGG | + | chr7_3:78249159-78249178 | None:intergenic | 25.0% |
| ! | ATAATTCAATGATTAGGGTT+AGG | + | chr7_3:78249160-78249179 | None:intergenic | 25.0% |
| ! | CGTGAATAATTCAATGATTA+GGG | + | chr7_3:78249165-78249184 | None:intergenic | 25.0% |
| ! | CAAATTATGACATGTTTGTT+GGG | + | chr7_3:78249505-78249524 | None:intergenic | 25.0% |
| ! | ACAAATTATGACATGTTTGT+TGG | + | chr7_3:78249506-78249525 | None:intergenic | 25.0% |
| !!! | TATTTTCAAGTAACTCATGT+CGG | - | chr7_3:78249528-78249547 | Msa1126690:intron | 25.0% |
| ! | TCAAATAAGCCAATCTAAAT+AGG | - | chr7_3:78249560-78249579 | Msa1126690:intron | 25.0% |
| ! | AATCTAAATAGGTCCTTAAT+GGG | - | chr7_3:78249571-78249590 | Msa1126690:intron | 25.0% |
| ! | TAATTCAATGATTAGGGTTA+GGG | + | chr7_3:78249159-78249178 | None:intergenic | 25.0% |
| ! | ATAATTCAATGATTAGGGTT+AGG | + | chr7_3:78249160-78249179 | None:intergenic | 25.0% |
| ! | CGTGAATAATTCAATGATTA+GGG | + | chr7_3:78249165-78249184 | None:intergenic | 25.0% |
| ! | CAAATTATGACATGTTTGTT+GGG | + | chr7_3:78249505-78249524 | None:intergenic | 25.0% |
| ! | ACAAATTATGACATGTTTGT+TGG | + | chr7_3:78249506-78249525 | None:intergenic | 25.0% |
| !!! | TATTTTCAAGTAACTCATGT+CGG | - | chr7_3:78249528-78249547 | Msa1126690:intron | 25.0% |
| ! | TCAAATAAGCCAATCTAAAT+AGG | - | chr7_3:78249560-78249579 | Msa1126690:intron | 25.0% |
| ! | AATCTAAATAGGTCCTTAAT+GGG | - | chr7_3:78249571-78249590 | Msa1126690:intron | 25.0% |
| GCGTGAATAATTCAATGATT+AGG | + | chr7_3:78249166-78249185 | None:intergenic | 30.0% | |
| TCGTAGAATCTGAATCTAAT+AGG | - | chr7_3:78249336-78249355 | Msa1126690:intron | 30.0% | |
| CATTAAGGACCTATTTAGAT+TGG | + | chr7_3:78249572-78249591 | None:intergenic | 30.0% | |
| CAATCTAAATAGGTCCTTAA+TGG | - | chr7_3:78249570-78249589 | Msa1126690:intron | 30.0% | |
| GGGAAAATAACAAAATGCAA+AGG | + | chr7_3:78249969-78249988 | None:intergenic | 30.0% | |
| GCGTGAATAATTCAATGATT+AGG | + | chr7_3:78249166-78249185 | None:intergenic | 30.0% | |
| TCGTAGAATCTGAATCTAAT+AGG | - | chr7_3:78249336-78249355 | Msa1126690:intron | 30.0% | |
| CATTAAGGACCTATTTAGAT+TGG | + | chr7_3:78249572-78249591 | None:intergenic | 30.0% | |
| CAATCTAAATAGGTCCTTAA+TGG | - | chr7_3:78249570-78249589 | Msa1126690:intron | 30.0% | |
| GGGAAAATAACAAAATGCAA+AGG | + | chr7_3:78249969-78249988 | None:intergenic | 30.0% | |
| AGCTTGACTTCGTTTAGATT+GGG | + | chr7_3:78249232-78249251 | None:intergenic | 35.0% | |
| ACAAGTTGTTCATCCAAACA+GGG | + | chr7_3:78249362-78249381 | None:intergenic | 35.0% | |
| AACAAGTTGTTCATCCAAAC+AGG | + | chr7_3:78249363-78249382 | None:intergenic | 35.0% | |
| AGGAACATATGTTGCATGTT+TGG | + | chr7_3:78249729-78249748 | None:intergenic | 35.0% | |
| AAACAACGGAAAGAAACTCA+TGG | - | chr7_3:78249841-78249860 | Msa1126690:intron | 35.0% | |
| CATCAACGATAACTTGAATC+GGG | + | chr7_3:78249922-78249941 | None:intergenic | 35.0% | |
| GCATCAACGATAACTTGAAT+CGG | + | chr7_3:78249923-78249942 | None:intergenic | 35.0% | |
| AGCTTGACTTCGTTTAGATT+GGG | + | chr7_3:78249232-78249251 | None:intergenic | 35.0% | |
| ACAAGTTGTTCATCCAAACA+GGG | + | chr7_3:78249362-78249381 | None:intergenic | 35.0% | |
| AACAAGTTGTTCATCCAAAC+AGG | + | chr7_3:78249363-78249382 | None:intergenic | 35.0% | |
| AGGAACATATGTTGCATGTT+TGG | + | chr7_3:78249729-78249748 | None:intergenic | 35.0% | |
| AAACAACGGAAAGAAACTCA+TGG | - | chr7_3:78249841-78249860 | Msa1126690:intron | 35.0% | |
| CATCAACGATAACTTGAATC+GGG | + | chr7_3:78249922-78249941 | None:intergenic | 35.0% | |
| GCATCAACGATAACTTGAAT+CGG | + | chr7_3:78249923-78249942 | None:intergenic | 35.0% | |
| TGCCTTCAGAACTAAAAACC+AGG | - | chr7_3:78249041-78249060 | Msa1126690:CDS | 40.0% | |
| GCCTTCAGAACTAAAAACCA+GGG | - | chr7_3:78249042-78249061 | Msa1126690:CDS | 40.0% | |
| !!! | TCCCTGGTTTTTAGTTCTGA+AGG | + | chr7_3:78249046-78249065 | None:intergenic | 40.0% |
| AAGCTACCTTGTAGATAGTG+CGG | + | chr7_3:78249085-78249104 | None:intergenic | 40.0% | |
| GTTAACGAGAGAGATGAAGA+AGG | + | chr7_3:78249133-78249152 | None:intergenic | 40.0% | |
| TTGAATTATTCACGCAGCCA+TGG | - | chr7_3:78249171-78249190 | Msa1126690:CDS | 40.0% | |
| GAGCTTGACTTCGTTTAGAT+TGG | + | chr7_3:78249233-78249252 | None:intergenic | 40.0% | |
| AAGTCAAGCTCTTCAACCAA+TGG | - | chr7_3:78249242-78249261 | Msa1126690:CDS | 40.0% | |
| TGAATCTAATAGGCCCTGTT+TGG | - | chr7_3:78249346-78249365 | Msa1126690:intron | 40.0% | |
| AGATTACCGATCTGTCTCTT+GGG | - | chr7_3:78249681-78249700 | Msa1126690:intron | 40.0% | |
| TTAGTGAGCCTCTCAACAAT+GGG | + | chr7_3:78249800-78249819 | None:intergenic | 40.0% | |
| ACTAACTCTCTCATGATGCA+CGG | - | chr7_3:78249815-78249834 | Msa1126690:CDS | 40.0% | |
| ATGATGCACGGTAGAAACAA+CGG | - | chr7_3:78249827-78249846 | Msa1126690:intron | 40.0% | |
| GAAAGAAACTCATGGCTGTT+AGG | - | chr7_3:78249849-78249868 | Msa1126690:intron | 40.0% | |
| TAGGATCATTAAGCATGCCA+TGG | - | chr7_3:78249868-78249887 | Msa1126690:intron | 40.0% | |
| TAGCAAGTGAATGATCTCCA+TGG | + | chr7_3:78249888-78249907 | None:intergenic | 40.0% | |
| TGCCTTCAGAACTAAAAACC+AGG | - | chr7_3:78249041-78249060 | Msa1126690:CDS | 40.0% | |
| GCCTTCAGAACTAAAAACCA+GGG | - | chr7_3:78249042-78249061 | Msa1126690:CDS | 40.0% | |
| !!! | TCCCTGGTTTTTAGTTCTGA+AGG | + | chr7_3:78249046-78249065 | None:intergenic | 40.0% |
| AAGCTACCTTGTAGATAGTG+CGG | + | chr7_3:78249085-78249104 | None:intergenic | 40.0% | |
| GTTAACGAGAGAGATGAAGA+AGG | + | chr7_3:78249133-78249152 | None:intergenic | 40.0% | |
| TTGAATTATTCACGCAGCCA+TGG | - | chr7_3:78249171-78249190 | Msa1126690:CDS | 40.0% | |
| GAGCTTGACTTCGTTTAGAT+TGG | + | chr7_3:78249233-78249252 | None:intergenic | 40.0% | |
| AAGTCAAGCTCTTCAACCAA+TGG | - | chr7_3:78249242-78249261 | Msa1126690:CDS | 40.0% | |
| TGAATCTAATAGGCCCTGTT+TGG | - | chr7_3:78249346-78249365 | Msa1126690:intron | 40.0% | |
| AGATTACCGATCTGTCTCTT+GGG | - | chr7_3:78249681-78249700 | Msa1126690:intron | 40.0% | |
| TTAGTGAGCCTCTCAACAAT+GGG | + | chr7_3:78249800-78249819 | None:intergenic | 40.0% | |
| ACTAACTCTCTCATGATGCA+CGG | - | chr7_3:78249815-78249834 | Msa1126690:CDS | 40.0% | |
| ATGATGCACGGTAGAAACAA+CGG | - | chr7_3:78249827-78249846 | Msa1126690:intron | 40.0% | |
| GAAAGAAACTCATGGCTGTT+AGG | - | chr7_3:78249849-78249868 | Msa1126690:intron | 40.0% | |
| TAGGATCATTAAGCATGCCA+TGG | - | chr7_3:78249868-78249887 | Msa1126690:intron | 40.0% | |
| TAGCAAGTGAATGATCTCCA+TGG | + | chr7_3:78249888-78249907 | None:intergenic | 40.0% | |
| AAAAACCAGGGAGAAGCTGA+CGG | - | chr7_3:78249054-78249073 | Msa1126690:CDS | 45.0% | |
| GATTGGGATCAACTTCGACT+GGG | + | chr7_3:78249216-78249235 | None:intergenic | 45.0% | |
| AGATTGGGATCAACTTCGAC+TGG | + | chr7_3:78249217-78249236 | None:intergenic | 45.0% | |
| CAAGAGACAGATCGGTAATC+TGG | + | chr7_3:78249682-78249701 | None:intergenic | 45.0% | |
| CAGATTACCGATCTGTCTCT+TGG | - | chr7_3:78249680-78249699 | Msa1126690:intron | 45.0% | |
| GATTACCGATCTGTCTCTTG+GGG | - | chr7_3:78249682-78249701 | Msa1126690:intron | 45.0% | |
| GTAATCCCCAAGAGACAGAT+CGG | + | chr7_3:78249690-78249709 | None:intergenic | 45.0% | |
| CTGTCTCTTGGGGATTACAT+TGG | - | chr7_3:78249692-78249711 | Msa1126690:intron | 45.0% | |
| ACATATGTTCCTCACACTGC+TGG | - | chr7_3:78249737-78249756 | Msa1126690:intron | 45.0% | |
| GTTAGTGAGCCTCTCAACAA+TGG | + | chr7_3:78249801-78249820 | None:intergenic | 45.0% | |
| CGATAACTTGAATCGGGTTC+TGG | + | chr7_3:78249916-78249935 | None:intergenic | 45.0% | |
| AAAAACCAGGGAGAAGCTGA+CGG | - | chr7_3:78249054-78249073 | Msa1126690:CDS | 45.0% | |
| GATTGGGATCAACTTCGACT+GGG | + | chr7_3:78249216-78249235 | None:intergenic | 45.0% | |
| AGATTGGGATCAACTTCGAC+TGG | + | chr7_3:78249217-78249236 | None:intergenic | 45.0% | |
| CAAGAGACAGATCGGTAATC+TGG | + | chr7_3:78249682-78249701 | None:intergenic | 45.0% | |
| CAGATTACCGATCTGTCTCT+TGG | - | chr7_3:78249680-78249699 | Msa1126690:intron | 45.0% | |
| GATTACCGATCTGTCTCTTG+GGG | - | chr7_3:78249682-78249701 | Msa1126690:intron | 45.0% | |
| GTAATCCCCAAGAGACAGAT+CGG | + | chr7_3:78249690-78249709 | None:intergenic | 45.0% | |
| CTGTCTCTTGGGGATTACAT+TGG | - | chr7_3:78249692-78249711 | Msa1126690:intron | 45.0% | |
| ACATATGTTCCTCACACTGC+TGG | - | chr7_3:78249737-78249756 | Msa1126690:intron | 45.0% | |
| GTTAGTGAGCCTCTCAACAA+TGG | + | chr7_3:78249801-78249820 | None:intergenic | 45.0% | |
| CGATAACTTGAATCGGGTTC+TGG | + | chr7_3:78249916-78249935 | None:intergenic | 45.0% | |
| AACTTCGACTGGGATAGCGA+CGG | + | chr7_3:78249206-78249225 | None:intergenic | 50.0% | |
| GGGGATTACATTGGAGCAAG+AGG | - | chr7_3:78249701-78249720 | Msa1126690:intron | 50.0% | |
| ATGTTCCTCACACTGCTGGT+AGG | - | chr7_3:78249741-78249760 | Msa1126690:intron | 50.0% | |
| !! | GGTACTCAAAGAAGCGCTTC+AGG | - | chr7_3:78249762-78249781 | Msa1126690:CDS | 50.0% |
| CTCAGTGTCCCATTGTTGAG+AGG | - | chr7_3:78249789-78249808 | Msa1126690:CDS | 50.0% | |
| TCGTTGATGCTGTCGTCAAC+AGG | - | chr7_3:78249933-78249952 | Msa1126690:five_prime_UTR | 50.0% | |
| AACTTCGACTGGGATAGCGA+CGG | + | chr7_3:78249206-78249225 | None:intergenic | 50.0% | |
| GGGGATTACATTGGAGCAAG+AGG | - | chr7_3:78249701-78249720 | Msa1126690:intron | 50.0% | |
| ATGTTCCTCACACTGCTGGT+AGG | - | chr7_3:78249741-78249760 | Msa1126690:intron | 50.0% | |
| !! | GGTACTCAAAGAAGCGCTTC+AGG | - | chr7_3:78249762-78249781 | Msa1126690:CDS | 50.0% |
| CTCAGTGTCCCATTGTTGAG+AGG | - | chr7_3:78249789-78249808 | Msa1126690:CDS | 50.0% | |
| TCGTTGATGCTGTCGTCAAC+AGG | - | chr7_3:78249933-78249952 | Msa1126690:five_prime_UTR | 50.0% | |
| ACCTTGTAGATAGTGCGGCG+CGG | + | chr7_3:78249080-78249099 | None:intergenic | 55.0% | |
| AGCGACGGTTTCATCAGCCA+TGG | + | chr7_3:78249191-78249210 | None:intergenic | 55.0% | |
| GAACGTCGTCGAAGCTCCAT+TGG | + | chr7_3:78249261-78249280 | None:intergenic | 55.0% | |
| ATGGAGCTTCGACGACGTTC+AGG | - | chr7_3:78249261-78249280 | Msa1126690:CDS | 55.0% | |
| GAGTACCTACCAGCAGTGTG+AGG | + | chr7_3:78249749-78249768 | None:intergenic | 55.0% | |
| ACCTTGTAGATAGTGCGGCG+CGG | + | chr7_3:78249080-78249099 | None:intergenic | 55.0% | |
| AGCGACGGTTTCATCAGCCA+TGG | + | chr7_3:78249191-78249210 | None:intergenic | 55.0% | |
| GAACGTCGTCGAAGCTCCAT+TGG | + | chr7_3:78249261-78249280 | None:intergenic | 55.0% | |
| ATGGAGCTTCGACGACGTTC+AGG | - | chr7_3:78249261-78249280 | Msa1126690:CDS | 55.0% | |
| GAGTACCTACCAGCAGTGTG+AGG | + | chr7_3:78249749-78249768 | None:intergenic | 55.0% | |
| GCCGCGCCGCACTATCTACA+AGG | - | chr7_3:78249076-78249095 | Msa1126690:CDS | 65.0% | |
| GCCGCGCCGCACTATCTACA+AGG | - | chr7_3:78249076-78249095 | Msa1126690:CDS | 65.0% | |
| CGCGGCCGTCAGCTTCTCCC+TGG | + | chr7_3:78249062-78249081 | None:intergenic | 75.0% | |
| CGCGGCCGTCAGCTTCTCCC+TGG | + | chr7_3:78249062-78249081 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 78249031 | 78249997 | 78249031 | ID=Msa1126690;Name=Msa1126690 |
| chr7_3 | mRNA | 78249031 | 78249997 | 78249031 | ID=Msa1126690-mRNA-1;Parent=Msa1126690;Name=Msa1126690-mRNA-1;_AED=0.05;_eAED=0.05;_QI=69|1|0.66|1|0.5|0.33|3|0|135 |
| chr7_3 | exon | 78249031 | 78249345 | 78249031 | ID=Msa1126690-mRNA-1:exon:21799;Parent=Msa1126690-mRNA-1 |
| chr7_3 | exon | 78249746 | 78249840 | 78249746 | ID=Msa1126690-mRNA-1:exon:21798;Parent=Msa1126690-mRNA-1 |
| chr7_3 | exon | 78249931 | 78249997 | 78249931 | ID=Msa1126690-mRNA-1:exon:21797;Parent=Msa1126690-mRNA-1 |
| chr7_3 | five_prime_UTR | 78249931 | 78249997 | 78249931 | ID=Msa1126690-mRNA-1:five_prime_utr;Parent=Msa1126690-mRNA-1 |
| chr7_3 | five_prime_UTR | 78249839 | 78249840 | 78249839 | ID=Msa1126690-mRNA-1:five_prime_utr;Parent=Msa1126690-mRNA-1 |
| chr7_3 | CDS | 78249746 | 78249838 | 78249746 | ID=Msa1126690-mRNA-1:cds;Parent=Msa1126690-mRNA-1 |
| chr7_3 | CDS | 78249031 | 78249345 | 78249031 | ID=Msa1126690-mRNA-1:cds;Parent=Msa1126690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
