Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524340 | KAF5201065.1 | 82.063 | 223 | 40 | 0 | 67 | 289 | 1 | 223 | 3.73e-136 | 394 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524340 | sp|P49227|RL52_ARATH | 77.232 | 224 | 44 | 1 | 67 | 283 | 1 | 224 | 4.41e-123 | 357 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524340 | A0A7J6WWZ9 | 82.063 | 223 | 40 | 0 | 67 | 289 | 1 | 223 | 1.78e-136 | 394 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001390 | Msa0524340 | 0.932535 | 7.365055e-95 | -8.615850e-47 |
| Msa0003030 | Msa0524340 | 0.802559 | 5.297710e-49 | -8.615850e-47 |
| Msa0079560 | Msa0524340 | 0.808144 | 3.577166e-50 | -8.615850e-47 |
| Msa0127230 | Msa0524340 | 0.811597 | 6.466924e-51 | -8.615850e-47 |
| Msa0146910 | Msa0524340 | 0.802396 | 5.722331e-49 | -8.615850e-47 |
| Msa0172300 | Msa0524340 | 0.814047 | 1.879112e-51 | -8.615850e-47 |
| Msa0182100 | Msa0524340 | 0.804206 | 2.414319e-49 | -8.615850e-47 |
| Msa0373350 | Msa0524340 | 0.887366 | 1.520685e-72 | -8.615850e-47 |
| Msa0388520 | Msa0524340 | 0.823575 | 1.286397e-53 | -8.615850e-47 |
| Msa0421920 | Msa0524340 | 0.880087 | 7.324854e-70 | -8.615850e-47 |
| Msa0427380 | Msa0524340 | 0.800241 | 1.580417e-48 | -8.615850e-47 |
| Msa0467740 | Msa0524340 | 0.809432 | 1.898188e-50 | -8.615850e-47 |
| Msa0514130 | Msa0524340 | 0.816084 | 6.635508e-52 | -8.615850e-47 |
| Msa0524340 | Msa0524450 | 0.952376 | 2.767136e-110 | -8.615850e-47 |
| Msa0524340 | Msa0578010 | 0.826335 | 2.870850e-54 | -8.615850e-47 |
| Msa0524340 | Msa0656450 | 0.819241 | 1.287543e-52 | -8.615850e-47 |
| Msa0524340 | Msa1035040 | 0.811313 | 7.451616e-51 | -8.615850e-47 |
| Msa0524340 | Msa1126690 | 0.806933 | 6.466753e-50 | -8.615850e-47 |
| Msa0524340 | Msa1144610 | 0.807292 | 5.428686e-50 | -8.615850e-47 |
| Msa0524340 | Msa1165210 | 0.806395 | 8.399286e-50 | -8.615850e-47 |
| Msa0524340 | Msa1227350 | 0.845514 | 3.873703e-59 | -8.615850e-47 |
| Msa0524340 | Msa1245270 | 0.831711 | 1.429470e-55 | -8.615850e-47 |
| Msa0524340 | Msa1284800 | 0.824298 | 8.706275e-54 | -8.615850e-47 |
| Msa0524340 | Msa1367540 | 0.809141 | 2.191416e-50 | -8.615850e-47 |
| Msa0524340 | Msa1387750 | 0.809777 | 1.600301e-50 | -8.615850e-47 |
| Msa0524340 | Msa1403520 | 0.804035 | 2.620789e-49 | -8.615850e-47 |
| Msa0524340 | Msa1413570 | 0.819166 | 1.339575e-52 | -8.615850e-47 |
| Msa0524340 | Msa1424570 | 0.850235 | 1.935412e-60 | -8.615850e-47 |
| Msa0524340 | Msa1446510 | 0.837632 | 4.635204e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524340 | MtrunA17_Chr3g0145691 | 97.462 | 197 | 5 | 0 | 67 | 263 | 1 | 197 | 2.70e-139 | 395 |
| Msa0524340 | MtrunA17_Chr8g0347691 | 90.863 | 197 | 18 | 0 | 67 | 263 | 1 | 197 | 8.88e-132 | 376 |
| Msa0524340 | MtrunA17_Chr4g0006821 | 42.982 | 114 | 37 | 2 | 193 | 278 | 11 | 124 | 1.22e-18 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524340 | AT5G39740.2 | 77.232 | 224 | 44 | 1 | 67 | 283 | 1 | 224 | 4.48e-124 | 357 |
| Msa0524340 | AT5G39740.1 | 77.232 | 224 | 44 | 1 | 67 | 283 | 1 | 224 | 4.48e-124 | 357 |
| Msa0524340 | AT3G25520.3 | 77.232 | 224 | 44 | 1 | 67 | 283 | 1 | 224 | 1.41e-123 | 355 |
| Msa0524340 | AT3G25520.1 | 77.232 | 224 | 44 | 1 | 67 | 283 | 1 | 224 | 1.41e-123 | 355 |
| Msa0524340 | AT3G25520.2 | 72.321 | 112 | 24 | 1 | 179 | 283 | 2 | 113 | 8.57e-50 | 164 |
Find 105 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGAACAACGTAACGGTATT+TGG | 0.124401 | 3_4:+77824244 | None:intergenic |
| AGAAATTATATTCTGGATTC+TGG | 0.196770 | 3_4:+77822265 | None:intergenic |
| GAGTTGGCCTAGATCAATTT+TGG | 0.256726 | 3_4:-77822130 | Msa0524340:three_prime_UTR |
| TGCACCAAAGACCCGGTTTC+CGG | 0.261045 | 3_4:+77823696 | None:intergenic |
| ATGTTATCATTATACTGTTT+GGG | 0.270970 | 3_4:-77822225 | Msa0524340:three_prime_UTR |
| TTATTGCACTGGTCTCCTTT+TGG | 0.304693 | 3_4:-77823934 | Msa0524340:CDS |
| CCTCGTAGGTGAGCTTCTTC+AGG | 0.308472 | 3_4:+77822512 | None:intergenic |
| AGGATGACGATGAGTGAAAT+TGG | 0.318851 | 3_4:-77822426 | Msa0524340:exon |
| TATGTTATCATTATACTGTT+TGG | 0.322769 | 3_4:-77822226 | Msa0524340:three_prime_UTR |
| GGCTTCAGGGAGCTTTGGAC+GGG | 0.327426 | 3_4:-77823590 | Msa0524340:intron |
| ACCACCGGAAACCGGGTCTT+TGG | 0.336386 | 3_4:-77823700 | Msa0524340:CDS |
| CACCTTCGACCGCGGCTGTC+TGG | 0.353769 | 3_4:+77824519 | None:intergenic |
| ATTGTCTCTGCTACCATTGC+TGG | 0.361362 | 3_4:-77824121 | Msa0524340:CDS |
| AGTTCTTAAAACTCTTGAAA+TGG | 0.366221 | 3_4:-77823904 | Msa0524340:CDS |
| TCTTGGGCTGCCTTTGCCTA+CGG | 0.372098 | 3_4:+77824604 | None:intergenic |
| CACGGCGACAAAAGGTTTGC+TGG | 0.378186 | 3_4:-77823552 | Msa0524340:CDS |
| CGAACAACGTAACGGTATTT+GGG | 0.383918 | 3_4:+77824245 | None:intergenic |
| CTTGGGCTGCCTTTGCCTAC+GGG | 0.385408 | 3_4:+77824605 | None:intergenic |
| TTAAGACCACCACCGGAAAC+CGG | 0.405019 | 3_4:-77823708 | Msa0524340:CDS |
| TGTTTGGCTTCAGGGAGCTT+TGG | 0.408256 | 3_4:-77823595 | Msa0524340:intron |
| AACAGCAAGAAATTATATTC+TGG | 0.418184 | 3_4:+77822258 | None:intergenic |
| CCGAATGGGTGGTGGGTGAT+TGG | 0.423400 | 3_4:+77824488 | None:intergenic |
| GAGAGCACGGAATGGCCTCC+TGG | 0.423509 | 3_4:+77823747 | None:intergenic |
| AAAAGATCCAAAATTGATCT+AGG | 0.423761 | 3_4:+77822123 | None:intergenic |
| TTCCGATTCCGAATGGGTGG+TGG | 0.437998 | 3_4:+77824480 | None:intergenic |
| TGGCTTCAGGGAGCTTTGGA+CGG | 0.456348 | 3_4:-77823591 | Msa0524340:intron |
| CATAGTTAGTAAGGCCTACA+TGG | 0.460963 | 3_4:+77824047 | None:intergenic |
| CCTCACTTTGGCCTCCATGT+AGG | 0.463629 | 3_4:-77824061 | Msa0524340:CDS |
| AAAGACCCGGTTTCCGGTGG+TGG | 0.468463 | 3_4:+77823702 | None:intergenic |
| CAAGCTCTCGATTCTGCAGC+CGG | 0.469082 | 3_4:-77822460 | Msa0524340:CDS |
| ACCCACCACCCATTCGGAAT+CGG | 0.470171 | 3_4:-77824482 | Msa0524340:CDS |
| TTCCGTGCTCTCCTTGATGT+TGG | 0.475927 | 3_4:-77823736 | Msa0524340:CDS |
| TCTTATATTACTCAGGCAAC+CGG | 0.479611 | 3_4:-77823799 | Msa0524340:intron |
| AGATTGTAGGCCAGCTAGGT+TGG | 0.483927 | 3_4:+77822080 | None:intergenic |
| ACGGGCCTCGTCACTTTATG+TGG | 0.485014 | 3_4:+77824623 | None:intergenic |
| GCTTCAGGGAGCTTTGGACG+GGG | 0.489494 | 3_4:-77823589 | Msa0524340:intron |
| ATACCGTTACGTTGTTCGAT+TGG | 0.490656 | 3_4:-77824240 | Msa0524340:intron |
| TACCTGCAGCATAGTTAGTA+AGG | 0.490657 | 3_4:+77824038 | None:intergenic |
| ATTTGTATTTCCAACCTAGC+TGG | 0.494722 | 3_4:-77822090 | Msa0524340:three_prime_UTR |
| CTTCAGGGAGCTTTGGACGG+GGG | 0.497730 | 3_4:-77823588 | Msa0524340:intron |
| TAAGAACTCGGCGAGCCAAA+AGG | 0.499289 | 3_4:+77823919 | None:intergenic |
| ACTCAAGACGCTAACAAATA+CGG | 0.500093 | 3_4:-77824272 | Msa0524340:CDS |
| ATATTCCTCACGGCGACAAA+AGG | 0.500231 | 3_4:-77823560 | Msa0524340:CDS |
| CCAATCACCCACCACCCATT+CGG | 0.501475 | 3_4:-77824488 | Msa0524340:CDS |
| GAAATTCAAGAGAAGAAGAG+AGG | 0.503110 | 3_4:-77824330 | Msa0524340:CDS |
| ACAGCCGCGGTCGAAGGTGC+GGG | 0.506236 | 3_4:-77824515 | Msa0524340:CDS |
| AGCTTGATGCTGAGGTTCAC+CGG | 0.506705 | 3_4:-77823509 | Msa0524340:CDS |
| CTTTGTCTTTCTTTCCTCGT+AGG | 0.506933 | 3_4:+77822498 | None:intergenic |
| GTCATCCTCATCATCATCTC+CGG | 0.510253 | 3_4:+77822441 | None:intergenic |
| GTACCATTCCGATTCCGAAT+GGG | 0.517511 | 3_4:+77824474 | None:intergenic |
| ATGTTACCAGCTTATTGCAC+TGG | 0.517859 | 3_4:-77823945 | Msa0524340:intron |
| CTGTGGAACCAGCTGACTCC+AGG | 0.519286 | 3_4:-77823765 | Msa0524340:CDS |
| GTTGATTCAGGCATTTGTGA+AGG | 0.519616 | 3_4:-77824390 | Msa0524340:intron |
| GACAGCCGCGGTCGAAGGTG+CGG | 0.523616 | 3_4:-77824516 | Msa0524340:CDS |
| GACGATGAGTGAAATTGGGT+TGG | 0.523666 | 3_4:-77822421 | Msa0524340:exon |
| CCGGGTCTTTGGTGCACTCA+AGG | 0.524232 | 3_4:-77823689 | Msa0524340:intron |
| AAATTCAAGAGAAGAAGAGA+GGG | 0.524882 | 3_4:-77824329 | Msa0524340:CDS |
| AATGGCCTCCTGGAGTCAGC+TGG | 0.528100 | 3_4:+77823757 | None:intergenic |
| CACCAGACAGCCGCGGTCGA+AGG | 0.530457 | 3_4:-77824521 | Msa0524340:CDS |
| TTGAGTAATCAAACGAACTC+TGG | 0.530507 | 3_4:+77824289 | None:intergenic |
| ACGATGAGTGAAATTGGGTT+GGG | 0.531052 | 3_4:-77822420 | Msa0524340:exon |
| GCACATGAGCTTCCTCACTT+TGG | 0.534108 | 3_4:-77824073 | Msa0524340:CDS |
| GGATGACGATGAGTGAAATT+GGG | 0.538515 | 3_4:-77822425 | Msa0524340:exon |
| AAATCGAAACAAGTCTATCC+AGG | 0.542261 | 3_4:+77822301 | None:intergenic |
| TGTTATCATTATACTGTTTG+GGG | 0.542461 | 3_4:-77822224 | Msa0524340:three_prime_UTR |
| AATGAGATTGTAGGCCAGCT+AGG | 0.542596 | 3_4:+77822076 | None:intergenic |
| GAAATGGATGATCAGTATGA+AGG | 0.545359 | 3_4:-77823888 | Msa0524340:CDS |
| AACTGTCGGAATTTGTGAGT+TGG | 0.547764 | 3_4:-77822146 | Msa0524340:three_prime_UTR |
| GTGACGAGGCCCGTAGGCAA+AGG | 0.553912 | 3_4:-77824614 | Msa0524340:CDS |
| GGTCTTGTTAAGACCACCAC+CGG | 0.557334 | 3_4:-77823715 | Msa0524340:CDS |
| TTCCACAGAATAATCCTCTC+CGG | 0.558152 | 3_4:+77823780 | None:intergenic |
| AGGAAATTCAAGCTAAACAA+TGG | 0.558533 | 3_4:+77822389 | None:intergenic |
| CCTTGAGTGCACCAAAGACC+CGG | 0.561480 | 3_4:+77823689 | None:intergenic |
| TCCGATTCCGAATGGGTGGT+GGG | 0.565668 | 3_4:+77824481 | None:intergenic |
| GGCCTTACTAACTATGCTGC+AGG | 0.566671 | 3_4:-77824040 | Msa0524340:intron |
| GAAATCACCTTGCCTTGTGG+TGG | 0.569736 | 3_4:+77822053 | None:intergenic |
| TAAGACCACCACCGGAAACC+GGG | 0.570064 | 3_4:-77823707 | Msa0524340:CDS |
| TTGTGGTGGAATGAGATTGT+AGG | 0.574520 | 3_4:+77822067 | None:intergenic |
| CGTACCATTCCGATTCCGAA+TGG | 0.575768 | 3_4:+77824473 | None:intergenic |
| TAATCAAACGAACTCTGGCT+CGG | 0.582000 | 3_4:+77824294 | None:intergenic |
| AAGAACAATATCACCAGCAA+TGG | 0.583771 | 3_4:+77824108 | None:intergenic |
| CCACCCATTCGGAATCGGAA+TGG | 0.587704 | 3_4:-77824477 | Msa0524340:intron |
| CGAGGAAAGAAAGACAAAGT+TGG | 0.591281 | 3_4:-77822494 | Msa0524340:CDS |
| TTCTCTGCACCAGACAGCCG+CGG | 0.593497 | 3_4:-77824528 | Msa0524340:CDS |
| TCTCATTCCACCACAAGGCA+AGG | 0.593883 | 3_4:-77822060 | Msa0524340:three_prime_UTR |
| GACCAACATCAAGGAGAGCA+CGG | 0.604422 | 3_4:+77823734 | None:intergenic |
| TTACCAATCGAACAACGTAA+CGG | 0.610329 | 3_4:+77824237 | None:intergenic |
| GTTATCATTATACTGTTTGG+GGG | 0.616333 | 3_4:-77822223 | Msa0524340:three_prime_UTR |
| TCTTAACAAGACCAACATCA+AGG | 0.618405 | 3_4:+77823725 | None:intergenic |
| ACTGCCCGCACCTTCGACCG+CGG | 0.619628 | 3_4:+77824511 | None:intergenic |
| ACCAAAGACCCGGTTTCCGG+TGG | 0.622290 | 3_4:+77823699 | None:intergenic |
| TACAATCTCATTCCACCACA+AGG | 0.626292 | 3_4:-77822065 | Msa0524340:three_prime_UTR |
| CCATTCCGATTCCGAATGGG+TGG | 0.629206 | 3_4:+77824477 | None:intergenic |
| CATAAAGTGACGAGGCCCGT+AGG | 0.633384 | 3_4:-77824620 | Msa0524340:CDS |
| TCAGAAATCACCTTGCCTTG+TGG | 0.649160 | 3_4:+77822050 | None:intergenic |
| ACATCAAGGAGAGCACGGAA+TGG | 0.653230 | 3_4:+77823739 | None:intergenic |
| TGCAGCCGGAGATGATGATG+AGG | 0.670180 | 3_4:-77822446 | Msa0524340:CDS |
| TATTACTCAGGCAACCGGAG+AGG | 0.678581 | 3_4:-77823794 | Msa0524340:intron |
| TGGAACCAGCTGACTCCAGG+AGG | 0.680812 | 3_4:-77823762 | Msa0524340:CDS |
| CCTACATGGAGGCCAAAGTG+AGG | 0.682005 | 3_4:+77824061 | None:intergenic |
| AGTTAGTAAGGCCTACATGG+AGG | 0.688944 | 3_4:+77824050 | None:intergenic |
| AACCGGAGAGGATTATTCTG+TGG | 0.701124 | 3_4:-77823782 | Msa0524340:CDS |
| CCTGAAGAAGCTCACCTACG+AGG | 0.707001 | 3_4:-77822512 | Msa0524340:CDS |
| TCAGTATGAAGGCAATGTTG+AGG | 0.719344 | 3_4:-77823877 | Msa0524340:intron |
| AGTGTCCACATAAAGTGACG+AGG | 0.738233 | 3_4:-77824628 | Msa0524340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAAATTAAAAAAATGAAA+AGG | + | chr3_4:77823187-77823206 | None:intergenic | 10.0% |
| !!! | TTTCATTTTTTTAATTTGTA+AGG | - | chr3_4:77823187-77823206 | Msa0524340:intron | 10.0% |
| !! | AAAAAAAAAAAAAAAACTGT+CGG | - | chr3_4:77824443-77824462 | Msa0524340:intron | 10.0% |
| !!! | TAGAAATAATAATATGGTTT+TGG | + | chr3_4:77822433-77822452 | None:intergenic | 15.0% |
| !! | TCTAGATAGAAATAATAATA+TGG | + | chr3_4:77822439-77822458 | None:intergenic | 15.0% |
| !!! | TAATTATATGGATTAAAAAG+AGG | + | chr3_4:77822619-77822638 | None:intergenic | 15.0% |
| !!! | CGATTAATTTGATAATTATA+TGG | + | chr3_4:77822631-77822650 | None:intergenic | 15.0% |
| !! | TGACATTGATATTTATTAAT+CGG | - | chr3_4:77822982-77823001 | Msa0524340:intron | 15.0% |
| !!! | TCGTTGAATTTTTAATTTTT+GGG | + | chr3_4:77823266-77823285 | None:intergenic | 15.0% |
| !!! | ATCGTTGAATTTTTAATTTT+TGG | + | chr3_4:77823267-77823286 | None:intergenic | 15.0% |
| !! | ATTAAAAATTCAACGATTAT+AGG | - | chr3_4:77823270-77823289 | Msa0524340:intron | 15.0% |
| !!! | ATTATTTAAATTTTTTGGGT+GGG | + | chr3_4:77823376-77823395 | None:intergenic | 15.0% |
| !!! | AATTATTTAAATTTTTTGGG+TGG | + | chr3_4:77823377-77823396 | None:intergenic | 15.0% |
| !!! | GATTTTATACAATTTTATGT+CGG | - | chr3_4:77823419-77823438 | Msa0524340:intron | 15.0% |
| !! | TGAATGGATAAAAAATAATT+TGG | - | chr3_4:77823628-77823647 | Msa0524340:intron | 15.0% |
| !!! | ACTTTAGATTATATCATTTT+TGG | - | chr3_4:77824267-77824286 | Msa0524340:CDS | 15.0% |
| !!! | AGTTTTTTTTTTTTTTTTGC+TGG | + | chr3_4:77824441-77824460 | None:intergenic | 15.0% |
| !!! | AGTTAAAAGAGAGTTTTTTA+GGG | + | chr3_4:77822029-77822048 | None:intergenic | 20.0% |
| !! | GACATTGATATTTATTAATC+GGG | - | chr3_4:77822983-77823002 | Msa0524340:intron | 20.0% |
| !! | TGTTCAAATAATGTCTTTAT+TGG | - | chr3_4:77823159-77823178 | Msa0524340:intron | 20.0% |
| !! | GTTCAAATAATGTCTTTATT+GGG | - | chr3_4:77823160-77823179 | Msa0524340:intron | 20.0% |
| !!! | GTTGAATTTTTAATTTTTGG+GGG | + | chr3_4:77823264-77823283 | None:intergenic | 20.0% |
| !!! | CGTTGAATTTTTAATTTTTG+GGG | + | chr3_4:77823265-77823284 | None:intergenic | 20.0% |
| !!! | GATTTTATACAATTTTGTGT+CGG | - | chr3_4:77823305-77823324 | Msa0524340:intron | 20.0% |
| !!! | TACAATTTTATGTCGATTTT+AGG | - | chr3_4:77823426-77823445 | Msa0524340:intron | 20.0% |
| !! | AAATTTGCACATGAAATAAT+TGG | - | chr3_4:77823600-77823619 | Msa0524340:intron | 20.0% |
| !!! | ATTTTTTTTGTAGACATTGA+TGG | - | chr3_4:77823730-77823749 | Msa0524340:CDS | 20.0% |
| !! | AAATACTACTAATTCAAACA+GGG | + | chr3_4:77823972-77823991 | None:intergenic | 20.0% |
| !!! | ATTATATCATTTTTGGACTA+TGG | - | chr3_4:77824274-77824293 | Msa0524340:CDS | 20.0% |
| !! | TATGTTATCATTATACTGTT+TGG | - | chr3_4:77824377-77824396 | Msa0524340:CDS | 20.0% |
| !! | ATGTTATCATTATACTGTTT+GGG | - | chr3_4:77824378-77824397 | Msa0524340:CDS | 20.0% |
| !!! | ATCAATTTTGGATCTTTTAT+TGG | - | chr3_4:77824485-77824504 | Msa0524340:CDS | 20.0% |
| !!! | CAGTTAAAAGAGAGTTTTTT+AGG | + | chr3_4:77822030-77822049 | None:intergenic | 25.0% |
| !! | CTAAAAAACTCTCTTTTAAC+TGG | - | chr3_4:77822028-77822047 | Msa0524340:three_prime_UTR | 25.0% |
| ! | GTTAGTTAGTTAGTTAAAAG+AGG | + | chr3_4:77822181-77822200 | None:intergenic | 25.0% |
| !!! | TAAAGAATGTTTGTTGATTC+AGG | - | chr3_4:77822201-77822220 | Msa0524340:three_prime_UTR | 25.0% |
| !!! | TTTCAAGAGTTTTAAGAACT+CGG | + | chr3_4:77822699-77822718 | None:intergenic | 25.0% |
| ! | AGTTCTTAAAACTCTTGAAA+TGG | - | chr3_4:77822699-77822718 | Msa0524340:intron | 25.0% |
| ! | GAGTAATATAAGACATACAA+AGG | + | chr3_4:77822797-77822816 | None:intergenic | 25.0% |
| ! | TTGTATGTCTTATATTACTC+AGG | - | chr3_4:77822797-77822816 | Msa0524340:intron | 25.0% |
| !! | ATTTATTAATCGGGTTTGTT+TGG | - | chr3_4:77822992-77823011 | Msa0524340:intron | 25.0% |
| ! | ATTTGAACATACCTTCATAT+AGG | + | chr3_4:77823148-77823167 | None:intergenic | 25.0% |
| !!! | AATTTTTAATTTTTGGGGGT+GGG | + | chr3_4:77823260-77823279 | None:intergenic | 25.0% |
| !!! | TTTATGTCGATTTTAGGTTT+CGG | - | chr3_4:77823432-77823451 | Msa0524340:intron | 25.0% |
| !!! | TACAATTTTATGTCGGTTTT+AGG | - | chr3_4:77823540-77823559 | Msa0524340:CDS | 25.0% |
| !!! | AAATGGGTTTGATATTTTTC+AGG | + | chr3_4:77823764-77823783 | None:intergenic | 25.0% |
| ! | CTTGATATATTCACTGAAAT+GGG | + | chr3_4:77823780-77823799 | None:intergenic | 25.0% |
| !! | GACTATTTACTATTGATGAT+TGG | - | chr3_4:77823934-77823953 | Msa0524340:CDS | 25.0% |
| ! | GAAATACTACTAATTCAAAC+AGG | + | chr3_4:77823973-77823992 | None:intergenic | 25.0% |
| ! | CAACAAAAATTTGACGATTA+AGG | + | chr3_4:77824237-77824256 | None:intergenic | 25.0% |
| ! | AGAAATTATATTCTGGATTC+TGG | + | chr3_4:77824341-77824360 | None:intergenic | 25.0% |
| ! | AACAGCAAGAAATTATATTC+TGG | + | chr3_4:77824348-77824367 | None:intergenic | 25.0% |
| ! | TGTTATCATTATACTGTTTG+GGG | - | chr3_4:77824379-77824398 | Msa0524340:CDS | 25.0% |
| ! | AAAAGATCCAAAATTGATCT+AGG | + | chr3_4:77824483-77824502 | None:intergenic | 25.0% |
| !!! | AGTTTTTTAGGGTTTCTCTT+GGG | + | chr3_4:77822018-77822037 | None:intergenic | 30.0% |
| GTTAGTTAGTTAAAAGAGGA+TGG | + | chr3_4:77822177-77822196 | None:intergenic | 30.0% | |
| AAATTCAAGAGAAGAAGAGA+GGG | - | chr3_4:77822274-77822293 | Msa0524340:three_prime_UTR | 30.0% | |
| ! | CTACACTTTTCATTTCTATG+TGG | - | chr3_4:77822763-77822782 | Msa0524340:intron | 30.0% |
| TATCAATGTCACAAGAATAG+AGG | + | chr3_4:77822973-77822992 | None:intergenic | 30.0% | |
| !!! | GAATTTTTAATTTTTGGGGG+TGG | + | chr3_4:77823261-77823280 | None:intergenic | 30.0% |
| !!! | TACAATTTTGTGTCGGTTTT+AGG | - | chr3_4:77823312-77823331 | Msa0524340:intron | 30.0% |
| !!! | TTTATGTCGGTTTTAGGTTT+CGG | - | chr3_4:77823546-77823565 | Msa0524340:CDS | 30.0% |
| AACACTAAAACTCATTTACG+CGG | - | chr3_4:77823576-77823595 | Msa0524340:CDS | 30.0% | |
| GAAATAATTGGTCACTTGAA+TGG | - | chr3_4:77823612-77823631 | Msa0524340:intron | 30.0% | |
| !! | CTAGAAAATATTTTGGGGAT+GGG | + | chr3_4:77823654-77823673 | None:intergenic | 30.0% |
| GCTTGATATATTCACTGAAA+TGG | + | chr3_4:77823781-77823800 | None:intergenic | 30.0% | |
| AATCGAGGAACTATACAAAA+AGG | - | chr3_4:77823820-77823839 | Msa0524340:intron | 30.0% | |
| AGGAAATTCAAGCTAAACAA+TGG | + | chr3_4:77824217-77824236 | None:intergenic | 30.0% | |
| ! | CGTCAAATTTTTGTTGCATA+TGG | - | chr3_4:77824241-77824260 | Msa0524340:CDS | 30.0% |
| GTTATCATTATACTGTTTGG+GGG | - | chr3_4:77824380-77824399 | Msa0524340:CDS | 30.0% | |
| !!! | GAGTTTTTTAGGGTTTCTCT+TGG | + | chr3_4:77822019-77822038 | None:intergenic | 35.0% |
| GAAATTCAAGAGAAGAAGAG+AGG | - | chr3_4:77822273-77822292 | Msa0524340:three_prime_UTR | 35.0% | |
| TTGAGTAATCAAACGAACTC+TGG | + | chr3_4:77822317-77822336 | None:intergenic | 35.0% | |
| ACTCAAGACGCTAACAAATA+CGG | - | chr3_4:77822331-77822350 | Msa0524340:three_prime_UTR | 35.0% | |
| TTACCAATCGAACAACGTAA+CGG | + | chr3_4:77822369-77822388 | None:intergenic | 35.0% | |
| !!! | TGGTTTTGGTTACTGAAGTA+TGG | + | chr3_4:77822419-77822438 | None:intergenic | 35.0% |
| AAGAACAATATCACCAGCAA+TGG | + | chr3_4:77822498-77822517 | None:intergenic | 35.0% | |
| GAAATGGATGATCAGTATGA+AGG | - | chr3_4:77822715-77822734 | Msa0524340:intron | 35.0% | |
| TCTTATATTACTCAGGCAAC+CGG | - | chr3_4:77822804-77822823 | Msa0524340:intron | 35.0% | |
| TCTTAACAAGACCAACATCA+AGG | + | chr3_4:77822881-77822900 | None:intergenic | 35.0% | |
| !! | TTCACCGGAAGTACATTTTT+GGG | - | chr3_4:77823109-77823128 | Msa0524340:intron | 35.0% |
| TGATCCAAATTTCCGTAAAG+TGG | - | chr3_4:77823342-77823361 | Msa0524340:intron | 35.0% | |
| TACACCACTTTACGGAAATT+TGG | + | chr3_4:77823349-77823368 | None:intergenic | 35.0% | |
| !! | GCGTAAATGAGTTTTAGTGT+TGG | + | chr3_4:77823577-77823596 | None:intergenic | 35.0% |
| !! | GCTAGAAAATATTTTGGGGA+TGG | + | chr3_4:77823655-77823674 | None:intergenic | 35.0% |
| ! | CGGAGCTAGAAAATATTTTG+GGG | + | chr3_4:77823659-77823678 | None:intergenic | 35.0% |
| ! | GCGGAGCTAGAAAATATTTT+GGG | + | chr3_4:77823660-77823679 | None:intergenic | 35.0% |
| AAAAAAGTCTCAAACTCCAC+AGG | + | chr3_4:77823694-77823713 | None:intergenic | 35.0% | |
| TTCAGTGAATATATCAAGCG+TGG | - | chr3_4:77823782-77823801 | Msa0524340:CDS | 35.0% | |
| !! | TTCTCAGGCTTTTTGATTGA+GGG | + | chr3_4:77823869-77823888 | None:intergenic | 35.0% |
| !! | AACACAAGAGGTATCACATT+AGG | - | chr3_4:77823903-77823922 | Msa0524340:CDS | 35.0% |
| ! | TACTATTGATGATTGGCAAG+TGG | - | chr3_4:77823941-77823960 | Msa0524340:intron | 35.0% |
| !! | TTTTGGACTATGGATTATCC+TGG | - | chr3_4:77824284-77824303 | Msa0524340:CDS | 35.0% |
| AAATCGAAACAAGTCTATCC+AGG | + | chr3_4:77824305-77824324 | None:intergenic | 35.0% | |
| ATTTGTATTTCCAACCTAGC+TGG | - | chr3_4:77824513-77824532 | Msa0524340:CDS | 35.0% | |
| ! | GTTGATTCAGGCATTTGTGA+AGG | - | chr3_4:77822213-77822232 | Msa0524340:three_prime_UTR | 40.0% |
| TAATCAAACGAACTCTGGCT+CGG | + | chr3_4:77822312-77822331 | None:intergenic | 40.0% | |
| CGAACAACGTAACGGTATTT+GGG | + | chr3_4:77822361-77822380 | None:intergenic | 40.0% | |
| TCGAACAACGTAACGGTATT+TGG | + | chr3_4:77822362-77822381 | None:intergenic | 40.0% | |
| ATACCGTTACGTTGTTCGAT+TGG | - | chr3_4:77822363-77822382 | Msa0524340:three_prime_UTR | 40.0% | |
| CATAGTTAGTAAGGCCTACA+TGG | + | chr3_4:77822559-77822578 | None:intergenic | 40.0% | |
| TACCTGCAGCATAGTTAGTA+AGG | + | chr3_4:77822568-77822587 | None:intergenic | 40.0% | |
| ATGTTACCAGCTTATTGCAC+TGG | - | chr3_4:77822658-77822677 | Msa0524340:intron | 40.0% | |
| !! | TTATTGCACTGGTCTCCTTT+TGG | - | chr3_4:77822669-77822688 | Msa0524340:intron | 40.0% |
| TCAGTATGAAGGCAATGTTG+AGG | - | chr3_4:77822726-77822745 | Msa0524340:intron | 40.0% | |
| TTCCACAGAATAATCCTCTC+CGG | + | chr3_4:77822826-77822845 | None:intergenic | 40.0% | |
| CAAGAATAGAGGACATAGGT+GGG | + | chr3_4:77822962-77822981 | None:intergenic | 40.0% | |
| ACAAGAATAGAGGACATAGG+TGG | + | chr3_4:77822963-77822982 | None:intergenic | 40.0% | |
| GTCACAAGAATAGAGGACAT+AGG | + | chr3_4:77822966-77822985 | None:intergenic | 40.0% | |
| !!! | AAGGTTTGCTGGTTTTGACA+AGG | - | chr3_4:77823062-77823081 | Msa0524340:intron | 40.0% |
| GAAAAAAGAGCTTGATGCTG+AGG | - | chr3_4:77823086-77823105 | Msa0524340:intron | 40.0% | |
| !! | GTTCACCGGAAGTACATTTT+TGG | - | chr3_4:77823108-77823127 | Msa0524340:intron | 40.0% |
| !! | TCACCGGAAGTACATTTTTG+GGG | - | chr3_4:77823110-77823129 | Msa0524340:intron | 40.0% |
| ACATGTTGCTGCCTATATGA+AGG | - | chr3_4:77823134-77823153 | Msa0524340:intron | 40.0% | |
| ATTTCCGTAAAGTGGTGTAG+TGG | - | chr3_4:77823350-77823369 | Msa0524340:intron | 40.0% | |
| TGATCCAAATTCCCGTAAAG+TGG | - | chr3_4:77823456-77823475 | Msa0524340:intron | 40.0% | |
| TACACCACTTTACGGGAATT+TGG | + | chr3_4:77823463-77823482 | None:intergenic | 40.0% | |
| ATTCCCGTAAAGTGGTGTAA+TGG | - | chr3_4:77823464-77823483 | Msa0524340:intron | 40.0% | |
| AGAGCCATTACACCACTTTA+CGG | + | chr3_4:77823471-77823490 | None:intergenic | 40.0% | |
| ! | GGCGGAGCTAGAAAATATTT+TGG | + | chr3_4:77823661-77823680 | None:intergenic | 40.0% |
| TATCAAGCGTGGAATTGAAG+CGG | - | chr3_4:77823793-77823812 | Msa0524340:intron | 40.0% | |
| !! | CTTCTCAGGCTTTTTGATTG+AGG | + | chr3_4:77823870-77823889 | None:intergenic | 40.0% |
| TGATACCTCTTGTGTTCCTT+TGG | + | chr3_4:77823899-77823918 | None:intergenic | 40.0% | |
| CTTTGTCTTTCTTTCCTCGT+AGG | + | chr3_4:77824108-77824127 | None:intergenic | 40.0% | |
| CGAGGAAAGAAAGACAAAGT+TGG | - | chr3_4:77824109-77824128 | Msa0524340:CDS | 40.0% | |
| AGGATGACGATGAGTGAAAT+TGG | - | chr3_4:77824177-77824196 | Msa0524340:intron | 40.0% | |
| GGATGACGATGAGTGAAATT+GGG | - | chr3_4:77824178-77824197 | Msa0524340:intron | 40.0% | |
| ACGATGAGTGAAATTGGGTT+GGG | - | chr3_4:77824183-77824202 | Msa0524340:intron | 40.0% | |
| AACTGTCGGAATTTGTGAGT+TGG | - | chr3_4:77824457-77824476 | Msa0524340:intron | 40.0% | |
| !! | GAGTTGGCCTAGATCAATTT+TGG | - | chr3_4:77824473-77824492 | Msa0524340:intron | 40.0% |
| ! | TTGTGGTGGAATGAGATTGT+AGG | + | chr3_4:77824539-77824558 | None:intergenic | 40.0% |
| TACAATCTCATTCCACCACA+AGG | - | chr3_4:77824538-77824557 | Msa0524340:CDS | 40.0% | |
| AGTGTCCACATAAAGTGACG+AGG | - | chr3_4:77821975-77821994 | Msa0524340:three_prime_UTR | 45.0% | |
| GTACCATTCCGATTCCGAAT+GGG | + | chr3_4:77822132-77822151 | None:intergenic | 45.0% | |
| ATGGAGTGTGGAAAGAGAAG+AGG | + | chr3_4:77822400-77822419 | None:intergenic | 45.0% | |
| GGTTACTGAAGTATGGAGTG+TGG | + | chr3_4:77822412-77822431 | None:intergenic | 45.0% | |
| ATTGTCTCTGCTACCATTGC+TGG | - | chr3_4:77822482-77822501 | Msa0524340:CDS | 45.0% | |
| AGTTAGTAAGGCCTACATGG+AGG | + | chr3_4:77822556-77822575 | None:intergenic | 45.0% | |
| AACCGGAGAGGATTATTCTG+TGG | - | chr3_4:77822821-77822840 | Msa0524340:intron | 45.0% | |
| ! | AATCGGGTTTGTTTGGCTTC+AGG | - | chr3_4:77822999-77823018 | Msa0524340:intron | 45.0% |
| ! | ATCGGGTTTGTTTGGCTTCA+GGG | - | chr3_4:77823000-77823019 | Msa0524340:intron | 45.0% |
| ATATTCCTCACGGCGACAAA+AGG | - | chr3_4:77823043-77823062 | Msa0524340:intron | 45.0% | |
| !! | CACCGGAAGTACATTTTTGG+GGG | - | chr3_4:77823111-77823130 | Msa0524340:intron | 45.0% |
| GTCCCCCAAAAATGTACTTC+CGG | + | chr3_4:77823116-77823135 | None:intergenic | 45.0% | |
| ! | TTGTAAGGCATTCATCCCAG+AGG | - | chr3_4:77823202-77823221 | Msa0524340:intron | 45.0% |
| GAGCCATTACACCACTTTAC+GGG | + | chr3_4:77823470-77823489 | None:intergenic | 45.0% | |
| AACTCCACAGGATGAATCAG+TGG | + | chr3_4:77823682-77823701 | None:intergenic | 45.0% | |
| AATTGAAGCGGATGGAATCG+AGG | - | chr3_4:77823805-77823824 | Msa0524340:intron | 45.0% | |
| TACCTCTTGTGTTCCTTTGG+TGG | + | chr3_4:77823896-77823915 | None:intergenic | 45.0% | |
| !! | TTCTTCAGGTTGTACCTGCT+CGG | + | chr3_4:77824080-77824099 | None:intergenic | 45.0% |
| GTCATCCTCATCATCATCTC+CGG | + | chr3_4:77824165-77824184 | None:intergenic | 45.0% | |
| GACGATGAGTGAAATTGGGT+TGG | - | chr3_4:77824182-77824201 | Msa0524340:intron | 45.0% | |
| AATGAGATTGTAGGCCAGCT+AGG | + | chr3_4:77824530-77824549 | None:intergenic | 45.0% | |
| TCAGAAATCACCTTGCCTTG+TGG | + | chr3_4:77824556-77824575 | None:intergenic | 45.0% | |
| !!! | TTGAATTATTTAAATTTTTT+GGG | + | chr3_4:77823380-77823399 | None:intergenic | 5.0% |
| !!! | ATTGAATTATTTAAATTTTT+TGG | + | chr3_4:77823381-77823400 | None:intergenic | 5.0% |
| !! | AATTTAAATAATTCAATTAT+AGG | - | chr3_4:77823384-77823403 | Msa0524340:intron | 5.0% |
| !!! | TTGAATTATTTAAATTTTTT+GGG | + | chr3_4:77823380-77823399 | None:intergenic | 5.0% |
| !!! | ATTGAATTATTTAAATTTTT+TGG | + | chr3_4:77823381-77823400 | None:intergenic | 5.0% |
| !! | AATTTAAATAATTCAATTAT+AGG | - | chr3_4:77823384-77823403 | Msa0524340:intron | 5.0% |
| !!! | CTGCTGCTTTTCTCCAATGC+AGG | + | chr3_4:77821955-77821974 | None:intergenic | 50.0% |
| CGTACCATTCCGATTCCGAA+TGG | + | chr3_4:77822133-77822152 | None:intergenic | 50.0% | |
| GCACATGAGCTTCCTCACTT+TGG | - | chr3_4:77822530-77822549 | Msa0524340:intron | 50.0% | |
| GGCCTTACTAACTATGCTGC+AGG | - | chr3_4:77822563-77822582 | Msa0524340:intron | 50.0% | |
| AGGAGACCAGTGCAATAAGC+TGG | + | chr3_4:77822667-77822686 | None:intergenic | 50.0% | |
| TAAGAACTCGGCGAGCCAAA+AGG | + | chr3_4:77822687-77822706 | None:intergenic | 50.0% | |
| TATTACTCAGGCAACCGGAG+AGG | - | chr3_4:77822809-77822828 | Msa0524340:intron | 50.0% | |
| ! | ACATCAAGGAGAGCACGGAA+TGG | + | chr3_4:77822867-77822886 | None:intergenic | 50.0% |
| TTCCGTGCTCTCCTTGATGT+TGG | - | chr3_4:77822867-77822886 | Msa0524340:intron | 50.0% | |
| GACCAACATCAAGGAGAGCA+CGG | + | chr3_4:77822872-77822891 | None:intergenic | 50.0% | |
| !! | GGTCTTGTTAAGACCACCAC+CGG | - | chr3_4:77822888-77822907 | Msa0524340:intron | 50.0% |
| TTAAGACCACCACCGGAAAC+CGG | - | chr3_4:77822895-77822914 | Msa0524340:intron | 50.0% | |
| ! | TGTTTGGCTTCAGGGAGCTT+TGG | - | chr3_4:77823008-77823027 | Msa0524340:intron | 50.0% |
| AGCTTGATGCTGAGGTTCAC+CGG | - | chr3_4:77823094-77823113 | Msa0524340:intron | 50.0% | |
| ! | TAAGGCATTCATCCCAGAGG+CGG | - | chr3_4:77823205-77823224 | Msa0524340:intron | 50.0% |
| ! | AGATAGTCATGGGCTGAGGT+GGG | - | chr3_4:77823228-77823247 | Msa0524340:intron | 50.0% |
| TGGGCCACTACACCACTTTA+CGG | + | chr3_4:77823357-77823376 | None:intergenic | 50.0% | |
| TCCACAGGATGAATCAGTGG+CGG | + | chr3_4:77823679-77823698 | None:intergenic | 50.0% | |
| AAGCGTGGAATTGAAGCGGA+TGG | - | chr3_4:77823797-77823816 | Msa0524340:intron | 50.0% | |
| GATTGAGGGATCTGCACGAA+TGG | + | chr3_4:77823855-77823874 | None:intergenic | 50.0% | |
| AGCCACCAAAGGAACACAAG+AGG | - | chr3_4:77823891-77823910 | Msa0524340:CDS | 50.0% | |
| AGATTGTAGGCCAGCTAGGT+TGG | + | chr3_4:77824526-77824545 | None:intergenic | 50.0% | |
| TCTCATTCCACCACAAGGCA+AGG | - | chr3_4:77824543-77824562 | Msa0524340:CDS | 50.0% | |
| GAAATCACCTTGCCTTGTGG+TGG | + | chr3_4:77824553-77824572 | None:intergenic | 50.0% | |
| ! | ACGGGCCTCGTCACTTTATG+TGG | + | chr3_4:77821983-77822002 | None:intergenic | 55.0% |
| CATAAAGTGACGAGGCCCGT+AGG | - | chr3_4:77821983-77822002 | Msa0524340:three_prime_UTR | 55.0% | |
| TCTTGGGCTGCCTTTGCCTA+CGG | + | chr3_4:77822002-77822021 | None:intergenic | 55.0% | |
| CCAATCACCCACCACCCATT+CGG | - | chr3_4:77822115-77822134 | Msa0524340:three_prime_UTR | 55.0% | |
| ACCCACCACCCATTCGGAAT+CGG | - | chr3_4:77822121-77822140 | Msa0524340:three_prime_UTR | 55.0% | |
| TCCGATTCCGAATGGGTGGT+GGG | + | chr3_4:77822125-77822144 | None:intergenic | 55.0% | |
| TTCCGATTCCGAATGGGTGG+TGG | + | chr3_4:77822126-77822145 | None:intergenic | 55.0% | |
| CCATTCCGATTCCGAATGGG+TGG | + | chr3_4:77822129-77822148 | None:intergenic | 55.0% | |
| CCACCCATTCGGAATCGGAA+TGG | - | chr3_4:77822126-77822145 | Msa0524340:three_prime_UTR | 55.0% | |
| CCTACATGGAGGCCAAAGTG+AGG | + | chr3_4:77822545-77822564 | None:intergenic | 55.0% | |
| CCTCACTTTGGCCTCCATGT+AGG | - | chr3_4:77822542-77822561 | Msa0524340:intron | 55.0% | |
| TAAGACCACCACCGGAAACC+GGG | - | chr3_4:77822896-77822915 | Msa0524340:intron | 55.0% | |
| TGCACCAAAGACCCGGTTTC+CGG | + | chr3_4:77822910-77822929 | None:intergenic | 55.0% | |
| CCTTGAGTGCACCAAAGACC+CGG | + | chr3_4:77822917-77822936 | None:intergenic | 55.0% | |
| !! | TGGCTTCAGGGAGCTTTGGA+CGG | - | chr3_4:77823012-77823031 | Msa0524340:intron | 55.0% |
| GGGGGTCTGGATATTCCTCA+CGG | - | chr3_4:77823033-77823052 | Msa0524340:intron | 55.0% | |
| ! | GCAAACCTTTTGTCGCCGTG+AGG | + | chr3_4:77823051-77823070 | None:intergenic | 55.0% |
| CACGGCGACAAAAGGTTTGC+TGG | - | chr3_4:77823051-77823070 | Msa0524340:intron | 55.0% | |
| CCATGACTATCTCCGCCTCT+GGG | + | chr3_4:77823220-77823239 | None:intergenic | 55.0% | |
| CCAGAGGCGGAGATAGTCAT+GGG | - | chr3_4:77823218-77823237 | Msa0524340:intron | 55.0% | |
| ! | GAGATAGTCATGGGCTGAGG+TGG | - | chr3_4:77823227-77823246 | Msa0524340:intron | 55.0% |
| !! | TAATTTTTGGGGGTGGGCCG+TGG | + | chr3_4:77823254-77823273 | None:intergenic | 55.0% |
| !! | TCCGCCACTGATTCATCCTG+TGG | - | chr3_4:77823675-77823694 | Msa0524340:intron | 55.0% |
| ! | TCCTTTGGTGGCTGCTTCTC+AGG | + | chr3_4:77823884-77823903 | None:intergenic | 55.0% |
| GCGTTGTTTGTCTTCCGAGC+AGG | - | chr3_4:77824063-77824082 | Msa0524340:CDS | 55.0% | |
| CCTCGTAGGTGAGCTTCTTC+AGG | + | chr3_4:77824094-77824113 | None:intergenic | 55.0% | |
| CCTGAAGAAGCTCACCTACG+AGG | - | chr3_4:77824091-77824110 | Msa0524340:CDS | 55.0% | |
| CAAGCTCTCGATTCTGCAGC+CGG | - | chr3_4:77824143-77824162 | Msa0524340:CDS | 55.0% | |
| ! | TGCAGCCGGAGATGATGATG+AGG | - | chr3_4:77824157-77824176 | Msa0524340:intron | 55.0% |
| CTTGGGCTGCCTTTGCCTAC+GGG | + | chr3_4:77822001-77822020 | None:intergenic | 60.0% | |
| TTCTCTGCACCAGACAGCCG+CGG | - | chr3_4:77822075-77822094 | Msa0524340:three_prime_UTR | 60.0% | |
| !! | CCGAATGGGTGGTGGGTGAT+TGG | + | chr3_4:77822118-77822137 | None:intergenic | 60.0% |
| ! | CTGTGGAACCAGCTGACTCC+AGG | - | chr3_4:77822838-77822857 | Msa0524340:intron | 60.0% |
| ! | TGGAACCAGCTGACTCCAGG+AGG | - | chr3_4:77822841-77822860 | Msa0524340:intron | 60.0% |
| AATGGCCTCCTGGAGTCAGC+TGG | + | chr3_4:77822849-77822868 | None:intergenic | 60.0% | |
| AAAGACCCGGTTTCCGGTGG+TGG | + | chr3_4:77822904-77822923 | None:intergenic | 60.0% | |
| ACCACCGGAAACCGGGTCTT+TGG | - | chr3_4:77822903-77822922 | Msa0524340:intron | 60.0% | |
| ACCAAAGACCCGGTTTCCGG+TGG | + | chr3_4:77822907-77822926 | None:intergenic | 60.0% | |
| ! | CCGGGTCTTTGGTGCACTCA+AGG | - | chr3_4:77822914-77822933 | Msa0524340:intron | 60.0% |
| !! | GGCTTCAGGGAGCTTTGGAC+GGG | - | chr3_4:77823013-77823032 | Msa0524340:intron | 60.0% |
| !! | GCTTCAGGGAGCTTTGGACG+GGG | - | chr3_4:77823014-77823033 | Msa0524340:intron | 60.0% |
| !! | CTTCAGGGAGCTTTGGACGG+GGG | - | chr3_4:77823015-77823034 | Msa0524340:intron | 60.0% |
| CCCAGAGGCGGAGATAGTCA+TGG | - | chr3_4:77823217-77823236 | Msa0524340:intron | 60.0% | |
| CCCATGACTATCTCCGCCTC+TGG | + | chr3_4:77823221-77823240 | None:intergenic | 60.0% | |
| ! | GCGGAGATAGTCATGGGCTG+AGG | - | chr3_4:77823224-77823243 | Msa0524340:intron | 60.0% |
| GCCTGAGAAGCAGCCACCAA+AGG | - | chr3_4:77823880-77823899 | Msa0524340:CDS | 60.0% | |
| GTGACGAGGCCCGTAGGCAA+AGG | - | chr3_4:77821989-77822008 | Msa0524340:three_prime_UTR | 65.0% | |
| ! | GAGAGCACGGAATGGCCTCC+TGG | + | chr3_4:77822859-77822878 | None:intergenic | 65.0% |
| ! | TCATGGGCTGAGGTGGGCCA+CGG | - | chr3_4:77823234-77823253 | Msa0524340:intron | 65.0% |
| CACCAGACAGCCGCGGTCGA+AGG | - | chr3_4:77822082-77822101 | Msa0524340:three_prime_UTR | 70.0% | |
| CACCTTCGACCGCGGCTGTC+TGG | + | chr3_4:77822087-77822106 | None:intergenic | 70.0% | |
| GACAGCCGCGGTCGAAGGTG+CGG | - | chr3_4:77822087-77822106 | Msa0524340:three_prime_UTR | 70.0% | |
| ! | ACAGCCGCGGTCGAAGGTGC+GGG | - | chr3_4:77822088-77822107 | Msa0524340:three_prime_UTR | 70.0% |
| ACTGCCCGCACCTTCGACCG+CGG | + | chr3_4:77822095-77822114 | None:intergenic | 70.0% | |
| !! | GGGAGCTTTGGACGGGGGTC+TGG | - | chr3_4:77823020-77823039 | Msa0524340:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 77821942 | 77824683 | 77821942 | ID=Msa0524340;Name=Msa0524340 |
| chr3_4 | mRNA | 77821942 | 77824683 | 77821942 | ID=Msa0524340-mRNA-1;Parent=Msa0524340;Name=Msa0524340-mRNA-1;_AED=0.09;_eAED=0.09;_QI=5|0.83|0.85|1|1|1|7|490|297 |
| chr3_4 | exon | 77821942 | 77822540 | 77821942 | ID=Msa0524340-mRNA-1:exon:22934;Parent=Msa0524340-mRNA-1 |
| chr3_4 | exon | 77823507 | 77823604 | 77823507 | ID=Msa0524340-mRNA-1:exon:22933;Parent=Msa0524340-mRNA-1 |
| chr3_4 | exon | 77823690 | 77823806 | 77823690 | ID=Msa0524340-mRNA-1:exon:22932;Parent=Msa0524340-mRNA-1 |
| chr3_4 | exon | 77823878 | 77823957 | 77823878 | ID=Msa0524340-mRNA-1:exon:22931;Parent=Msa0524340-mRNA-1 |
| chr3_4 | exon | 77824041 | 77824167 | 77824041 | ID=Msa0524340-mRNA-1:exon:22930;Parent=Msa0524340-mRNA-1 |
| chr3_4 | exon | 77824241 | 77824402 | 77824241 | ID=Msa0524340-mRNA-1:exon:22929;Parent=Msa0524340-mRNA-1 |
| chr3_4 | exon | 77824478 | 77824683 | 77824478 | ID=Msa0524340-mRNA-1:exon:22928;Parent=Msa0524340-mRNA-1 |
| chr3_4 | five_prime_UTR | 77824679 | 77824683 | 77824679 | ID=Msa0524340-mRNA-1:five_prime_utr;Parent=Msa0524340-mRNA-1 |
| chr3_4 | CDS | 77824478 | 77824678 | 77824478 | ID=Msa0524340-mRNA-1:cds;Parent=Msa0524340-mRNA-1 |
| chr3_4 | CDS | 77824241 | 77824402 | 77824241 | ID=Msa0524340-mRNA-1:cds;Parent=Msa0524340-mRNA-1 |
| chr3_4 | CDS | 77824041 | 77824167 | 77824041 | ID=Msa0524340-mRNA-1:cds;Parent=Msa0524340-mRNA-1 |
| chr3_4 | CDS | 77823878 | 77823957 | 77823878 | ID=Msa0524340-mRNA-1:cds;Parent=Msa0524340-mRNA-1 |
| chr3_4 | CDS | 77823690 | 77823806 | 77823690 | ID=Msa0524340-mRNA-1:cds;Parent=Msa0524340-mRNA-1 |
| chr3_4 | CDS | 77823507 | 77823604 | 77823507 | ID=Msa0524340-mRNA-1:cds;Parent=Msa0524340-mRNA-1 |
| chr3_4 | CDS | 77822432 | 77822540 | 77822432 | ID=Msa0524340-mRNA-1:cds;Parent=Msa0524340-mRNA-1 |
| chr3_4 | three_prime_UTR | 77821942 | 77822431 | 77821942 | ID=Msa0524340-mRNA-1:three_prime_utr;Parent=Msa0524340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
