AlfalfaGEDB | Msa0524340

M. sativa cultivar zhongmu-4 / Msa0524340

KEGG: K02932|K03327
GO: GO:0000027 GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0006810 GO:0006913 GO:0006996 GO:0007275 GO:0007389 GO:0008097 GO:0008150 GO:0008152 GO:0008283 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009955 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010467 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022622 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046907 GO:0048364 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051169 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:0099402 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1905392 GO:1990904
PFAM: PF17144.7

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0524340	KAF5201065.1	82.063	223	40	0	67	289	1	223	3.73e-136	394

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0524340	sp\|P49227\|RL52_ARATH	77.232	224	44	1	67	283	1	224	4.41e-123	357

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0524340	A0A7J6WWZ9	82.063	223	40	0	67	289	1	223	1.78e-136	394

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001390	Msa0524340	0.932535	7.365055e-95	-8.615850e-47
Msa0003030	Msa0524340	0.802559	5.297710e-49	-8.615850e-47
Msa0079560	Msa0524340	0.808144	3.577166e-50	-8.615850e-47
Msa0127230	Msa0524340	0.811597	6.466924e-51	-8.615850e-47
Msa0146910	Msa0524340	0.802396	5.722331e-49	-8.615850e-47
Msa0172300	Msa0524340	0.814047	1.879112e-51	-8.615850e-47
Msa0182100	Msa0524340	0.804206	2.414319e-49	-8.615850e-47
Msa0373350	Msa0524340	0.887366	1.520685e-72	-8.615850e-47
Msa0388520	Msa0524340	0.823575	1.286397e-53	-8.615850e-47
Msa0421920	Msa0524340	0.880087	7.324854e-70	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0524340	MtrunA17_Chr3g0145691	97.462	197	5	0	67	263	1	197	2.70e-139	395
Msa0524340	MtrunA17_Chr8g0347691	90.863	197	18	0	67	263	1	197	8.88e-132	376
Msa0524340	MtrunA17_Chr4g0006821	42.982	114	37	2	193	278	11	124	1.22e-18	80.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0524340	AT5G39740.2	77.232	224	44	1	67	283	1	224	4.48e-124	357
Msa0524340	AT5G39740.1	77.232	224	44	1	67	283	1	224	4.48e-124	357
Msa0524340	AT3G25520.3	77.232	224	44	1	67	283	1	224	1.41e-123	355
Msa0524340	AT3G25520.1	77.232	224	44	1	67	283	1	224	1.41e-123	355
Msa0524340	AT3G25520.2	72.321	112	24	1	179	283	2	113	8.57e-50	164

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Find 105 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATCCAAAATTGATCT+AGG	0.423761	3_4:+77822123	None:intergenic
AAAGACCCGGTTTCCGGTGG+TGG	0.468463	3_4:+77823702	None:intergenic
AAATCGAAACAAGTCTATCC+AGG	0.542261	3_4:+77822301	None:intergenic
AAATTCAAGAGAAGAAGAGA+GGG	0.524882	3_4:-77824329	Msa0524340:CDS
AACAGCAAGAAATTATATTC+TGG	0.418184	3_4:+77822258	None:intergenic
AACCGGAGAGGATTATTCTG+TGG	0.701124	3_4:-77823782	Msa0524340:CDS
AACTGTCGGAATTTGTGAGT+TGG	0.547764	3_4:-77822146	Msa0524340:three_prime_UTR
AAGAACAATATCACCAGCAA+TGG	0.583771	3_4:+77824108	None:intergenic
AATGAGATTGTAGGCCAGCT+AGG	0.542596	3_4:+77822076	None:intergenic
AATGGCCTCCTGGAGTCAGC+TGG	0.528100	3_4:+77823757	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTAGTTAGTTAAAAGAGGA+TGG	+	chr3_4:77822177-77822196	None:intergenic	30.0%
AAATTCAAGAGAAGAAGAGA+GGG	-	chr3_4:77822274-77822293	Msa0524340:three_prime_UTR	30.0%
TATCAATGTCACAAGAATAG+AGG	+	chr3_4:77822973-77822992	None:intergenic	30.0%
AACACTAAAACTCATTTACG+CGG	-	chr3_4:77823576-77823595	Msa0524340:CDS	30.0%
GAAATAATTGGTCACTTGAA+TGG	-	chr3_4:77823612-77823631	Msa0524340:intron	30.0%
GCTTGATATATTCACTGAAA+TGG	+	chr3_4:77823781-77823800	None:intergenic	30.0%
AATCGAGGAACTATACAAAA+AGG	-	chr3_4:77823820-77823839	Msa0524340:intron	30.0%
AGGAAATTCAAGCTAAACAA+TGG	+	chr3_4:77824217-77824236	None:intergenic	30.0%
GTTATCATTATACTGTTTGG+GGG	-	chr3_4:77824380-77824399	Msa0524340:CDS	30.0%
GAAATTCAAGAGAAGAAGAG+AGG	-	chr3_4:77822273-77822292	Msa0524340:three_prime_UTR	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	77821942	77824683	77821942	ID=Msa0524340;Name=Msa0524340
chr3_4	mRNA	77821942	77824683	77821942	ID=Msa0524340-mRNA-1;Parent=Msa0524340;Name=Msa0524340-mRNA-1;_AED=0.09;_eAED=0.09;_QI=5\|0.83\|0.85\|1\|1\|1\|7\|490\|297
chr3_4	exon	77821942	77822540	77821942	ID=Msa0524340-mRNA-1:exon:22934;Parent=Msa0524340-mRNA-1
chr3_4	exon	77823507	77823604	77823507	ID=Msa0524340-mRNA-1:exon:22933;Parent=Msa0524340-mRNA-1
chr3_4	exon	77823690	77823806	77823690	ID=Msa0524340-mRNA-1:exon:22932;Parent=Msa0524340-mRNA-1
chr3_4	exon	77823878	77823957	77823878	ID=Msa0524340-mRNA-1:exon:22931;Parent=Msa0524340-mRNA-1
chr3_4	exon	77824041	77824167	77824041	ID=Msa0524340-mRNA-1:exon:22930;Parent=Msa0524340-mRNA-1
chr3_4	exon	77824241	77824402	77824241	ID=Msa0524340-mRNA-1:exon:22929;Parent=Msa0524340-mRNA-1
chr3_4	exon	77824478	77824683	77824478	ID=Msa0524340-mRNA-1:exon:22928;Parent=Msa0524340-mRNA-1
chr3_4	five_prime_UTR	77824679	77824683	77824679	ID=Msa0524340-mRNA-1:five_prime_utr;Parent=Msa0524340-mRNA-1
chr3_4	CDS	77824478	77824678	77824478	ID=Msa0524340-mRNA-1:cds;Parent=Msa0524340-mRNA-1
chr3_4	CDS	77824241	77824402	77824241	ID=Msa0524340-mRNA-1:cds;Parent=Msa0524340-mRNA-1
chr3_4	CDS	77824041	77824167	77824041	ID=Msa0524340-mRNA-1:cds;Parent=Msa0524340-mRNA-1
chr3_4	CDS	77823878	77823957	77823878	ID=Msa0524340-mRNA-1:cds;Parent=Msa0524340-mRNA-1
chr3_4	CDS	77823690	77823806	77823690	ID=Msa0524340-mRNA-1:cds;Parent=Msa0524340-mRNA-1
chr3_4	CDS	77823507	77823604	77823507	ID=Msa0524340-mRNA-1:cds;Parent=Msa0524340-mRNA-1
chr3_4	CDS	77822432	77822540	77822432	ID=Msa0524340-mRNA-1:cds;Parent=Msa0524340-mRNA-1
chr3_4	three_prime_UTR	77821942	77822431	77821942	ID=Msa0524340-mRNA-1:three_prime_utr;Parent=Msa0524340-mRNA-1

Gene Sequence

>Msa0524340

ATGTGCCTGCATTGGAGAAAAGCAGCAGAGTGTCCACATAAAGTGACGAGGCCCGTAGGCAAAGGCAGCCCAAGAGAAACCCTAAAAAACTCTCTTTTAACTGGAAAACGAAATTCTCTTTTTTCTCTTTCTCTGCACCAGACAGCCGCGGTCGAAGGTGCGGGCAGTCCAATCACCCACCACCCATTCGGAATCGGAATGGCATTTGTGAAGGCTCAGAAATCAAATGCGTACTTCAAGCGATTTCAAGTGAAATTCAAGAGAAGAAGAGAGGGTAAGACTGATTACCGAGCCAGAGTTCGTTTGATTACTCAAGACGCTAACAAATACGGCACTCCCAAATACCGTTACGTTGTTCGATTGACAAACAAAGACATTGTCTGTCAAATTGTCTCTGCTACCATTGCTGGTGATATTGTTCTTGCTGCTGCTTACGCACATGAGCTTCCTCACTTTGGCCTCCATGTAGGCCTTACTAACTATGCTGCAGCTTATTGCACTGGTCTCCTTTTGGCTCGCCGAGTTCTTAAAACTCTTGAAATGGATGATCAGTATGAAGGCAATGTTGAGGCAACCGGAGAGGATTATTCTGTGGAACCAGCTGACTCCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTGTTAAGACCACCACCGGAAACCGGGTCTTTGGTGCACTCAAGGGAGCTTTGGACGGGGGTCTGGATATTCCTCACGGCGACAAAAGGTTTGCTGGTTTTGACAAGGAGAAAAAAGAGCTTGATGCTGAGGTTCACCGGAAGTACAACCTGAAGAAGCTCACCTACGAGGAAAGAAAGACAAAGTTGGTCTCTCGCTTGCAAGCTCTCGATTCTGCAGCCGGAGATGATGATGAGGATGACGATGAGTGA

Protein sequence

>Msa0524340

MCLHWRKAAECPHKVTRPVGKGSPRETLKNSLLTGKRNSLFSLSLHQTAAVEGAGSPITHHPFGIGMAFVKAQKSNAYFKRFQVKFKRRREGKTDYRARVRLITQDANKYGTPKYRYVVRLTNKDIVCQIVSATIAGDIVLAAAYAHELPHFGLHVGLTNYAAAYCTGLLLARRVLKTLEMDDQYEGNVEATGEDYSVEPADSRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHGDKRFAGFDKEKKELDAEVHRKYNLKKLTYEERKTKLVSRLQALDSAAGDDDEDDDE*