Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1245270 | XP_003611879.1 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1245270 | sp|P49204|RS42_ARATH | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0.0 | 506 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1245270 | B7FL29 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0001390 | Msa1245270 | 0.826464 | 2.673662e-54 | -8.615850e-47 |
Msa0094210 | Msa1245270 | 0.858198 | 9.713570e-63 | -8.615850e-47 |
Msa0602900 | Msa1245270 | 0.805632 | 1.215602e-49 | -8.615850e-47 |
Msa0619230 | Msa1245270 | 0.832646 | 8.395038e-56 | -8.615850e-47 |
Msa0621190 | Msa1245270 | 0.823923 | 1.066472e-53 | -8.615850e-47 |
Msa0643960 | Msa1245270 | 0.806663 | 7.372960e-50 | -8.615850e-47 |
Msa0656450 | Msa1245270 | 0.839758 | 1.308246e-57 | -8.615850e-47 |
Msa0691760 | Msa1245270 | 0.819453 | 1.152245e-52 | -8.615850e-47 |
Msa0700370 | Msa1245270 | 0.813597 | 2.362058e-51 | -8.615850e-47 |
Msa0704860 | Msa1245270 | 0.809544 | 1.795869e-50 | -8.615850e-47 |
Msa0708630 | Msa1245270 | 0.859025 | 5.500365e-63 | -8.615850e-47 |
Msa0759660 | Msa1245270 | 0.847496 | 1.114644e-59 | -8.615850e-47 |
Msa0790450 | Msa1245270 | 0.813811 | 2.119105e-51 | -8.615850e-47 |
Msa0132460 | Msa1245270 | 0.859771 | 3.284636e-63 | -8.615850e-47 |
Msa0182050 | Msa1245270 | 0.858288 | 9.128266e-63 | -8.615850e-47 |
Msa0182100 | Msa1245270 | 0.855977 | 4.390157e-62 | -8.615850e-47 |
Msa0188740 | Msa1245270 | 0.822165 | 2.741390e-53 | -8.615850e-47 |
Msa1245270 | Msa1284800 | 0.853785 | 1.899791e-61 | -8.615850e-47 |
Msa1245270 | Msa1351020 | 0.806609 | 7.569643e-50 | -8.615850e-47 |
Msa1245270 | Msa1351910 | 0.807544 | 4.800338e-50 | -8.615850e-47 |
Msa1245270 | Msa1363910 | 0.853194 | 2.807494e-61 | -8.615850e-47 |
Msa1245270 | Msa1363930 | 0.842200 | 2.989698e-58 | -8.615850e-47 |
Msa1245270 | Msa1367540 | 0.802755 | 4.825620e-49 | -8.615850e-47 |
Msa1245270 | Msa1387750 | 0.811316 | 7.442242e-51 | -8.615850e-47 |
Msa1245270 | Msa1390760 | 0.836313 | 1.006599e-56 | -8.615850e-47 |
Msa1245270 | Msa1403520 | 0.801701 | 7.952533e-49 | -8.615850e-47 |
Msa1245270 | Msa1413570 | 0.844083 | 9.415996e-59 | -8.615850e-47 |
Msa1245270 | Msa1424570 | 0.838864 | 2.232237e-57 | -8.615850e-47 |
Msa1245270 | Msa1432310 | 0.801720 | 7.881864e-49 | -8.615850e-47 |
Msa1245270 | Msa1446510 | 0.801968 | 7.009360e-49 | -8.615850e-47 |
Msa1245270 | Msa1449160 | 0.805267 | 1.450006e-49 | -8.615850e-47 |
Msa1245270 | Msa1450560 | 0.817102 | 3.925245e-52 | -8.615850e-47 |
Msa0371490 | Msa1245270 | 0.854054 | 1.588783e-61 | -8.615850e-47 |
Msa0373350 | Msa1245270 | 0.834738 | 2.519755e-56 | -8.615850e-47 |
Msa0388520 | Msa1245270 | 0.859995 | 2.811330e-63 | -8.615850e-47 |
Msa0421920 | Msa1245270 | 0.827823 | 1.264192e-54 | -8.615850e-47 |
Msa0426940 | Msa1245270 | 0.807220 | 5.622194e-50 | -8.615850e-47 |
Msa0270160 | Msa1245270 | 0.806251 | 9.005321e-50 | -8.615850e-47 |
Msa0277600 | Msa1245270 | 0.807180 | 5.733800e-50 | -8.615850e-47 |
Msa1126690 | Msa1245270 | 0.811549 | 6.623699e-51 | -8.615850e-47 |
Msa1144610 | Msa1245270 | 0.873069 | 1.955446e-67 | -8.615850e-47 |
Msa1144630 | Msa1245270 | 0.841580 | 4.358307e-58 | -8.615850e-47 |
Msa0511760 | Msa1245270 | 0.824806 | 6.612005e-54 | -8.615850e-47 |
Msa0524340 | Msa1245270 | 0.831711 | 1.429470e-55 | -8.615850e-47 |
Msa0524450 | Msa1245270 | 0.833545 | 5.014643e-56 | -8.615850e-47 |
Msa0547920 | Msa1245270 | 0.801695 | 7.976228e-49 | -8.615850e-47 |
Msa0573550 | Msa1245270 | 0.802484 | 5.487908e-49 | -8.615850e-47 |
Msa0578010 | Msa1245270 | 0.838976 | 2.087998e-57 | -8.615850e-47 |
Msa0582070 | Msa1245270 | 0.811341 | 7.349141e-51 | -8.615850e-47 |
Msa0930360 | Msa1245270 | 0.840762 | 7.153182e-58 | -8.615850e-47 |
Msa0930790 | Msa1245270 | 0.808502 | 3.001056e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1245270 | MtrunA17_Chr5g0403311 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
Msa1245270 | MtrunA17_Chr8g0357951 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
Msa1245270 | MtrunA17_Chr4g0005611 | 95.094 | 265 | 12 | 1 | 1 | 265 | 1 | 264 | 0.0 | 518 |
Msa1245270 | MtrunA17_Chr7g0243211 | 94.510 | 255 | 14 | 0 | 1 | 255 | 1 | 255 | 0.0 | 501 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1245270 | AT5G07090.1 | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0.0 | 506 |
Msa1245270 | AT2G17360.1 | 90.769 | 260 | 24 | 0 | 1 | 260 | 1 | 260 | 0.0 | 504 |
Msa1245270 | AT5G58420.1 | 90.076 | 262 | 26 | 0 | 1 | 262 | 1 | 262 | 0.0 | 503 |
Msa1245270 | AT5G07090.3 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.51e-169 | 468 |
Msa1245270 | AT5G07090.2 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.51e-169 | 468 |
Msa1245270 | AT2G17360.2 | 91.160 | 181 | 16 | 0 | 1 | 181 | 1 | 181 | 2.71e-125 | 354 |
Find 101 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGAATATCTTTATCAATTT+TGG | 0.092164 | 8_2:-35156213 | Msa1245270:three_prime_UTR |
CTCTCTAGCGTTGGAACTTT+TGG | 0.169265 | 8_2:-35158527 | Msa1245270:five_prime_UTR |
ACGGAAGCTCTCATTTGTTT+TGG | 0.257149 | 8_2:+35157210 | None:intergenic |
GCATTGGATGCTTGACAAAT+TGG | 0.267158 | 8_2:-35158154 | Msa1245270:CDS |
TTCCTCCAGATCCAGCTTGA+TGG | 0.308982 | 8_2:+35156583 | None:intergenic |
TTGGTCAATGTGTTTACTAT+TGG | 0.310472 | 8_2:-35156395 | Msa1245270:CDS |
AAGGTTCGTTCAGTGCAATT+TGG | 0.315956 | 8_2:-35156686 | Msa1245270:CDS |
CGTCAGGACCACACAAATCT+AGG | 0.320235 | 8_2:-35158025 | Msa1245270:CDS |
TGTGGTCCTGACGAGGGTTT+TGG | 0.324202 | 8_2:+35158035 | None:intergenic |
TTAGCCCTGATGACGGGGTC+TGG | 0.331490 | 8_2:+35156611 | None:intergenic |
TGGTTACTGGTGGTAAGAAT+AGG | 0.355587 | 8_2:-35156514 | Msa1245270:CDS |
AGGTTCGTTCAGTGCAATTT+GGG | 0.356395 | 8_2:-35156685 | Msa1245270:CDS |
GGTTACTGGTGGTAAGAATA+GGG | 0.361597 | 8_2:-35156513 | Msa1245270:CDS |
GCTACCCAGACCCCGTCATC+AGG | 0.361624 | 8_2:-35156616 | Msa1245270:CDS |
GGGAACGTCGTTATGGTTAC+TGG | 0.369601 | 8_2:-35156527 | Msa1245270:CDS |
TGGTCAATGTGTTTACTATT+GGG | 0.380101 | 8_2:-35156394 | Msa1245270:CDS |
ATTCTAGCTGGATATTGTAT+TGG | 0.383832 | 8_2:-35156119 | Msa1245270:three_prime_UTR |
TTGTCAAGCATCCAATGCTT+GGG | 0.386706 | 8_2:+35158159 | None:intergenic |
GCTCTGTTAATCTCACAATA+TGG | 0.387866 | 8_2:-35158502 | Msa1245270:intron |
ATTTCATCAAATTTGATGTT+GGG | 0.389801 | 8_2:-35156547 | Msa1245270:CDS |
GCGGATTGTGCGACCATCAT+AGG | 0.389914 | 8_2:+35156637 | None:intergenic |
GACTTATCCAGCTGGATTCA+TGG | 0.391447 | 8_2:-35157880 | Msa1245270:CDS |
AGTTGCTGCTTAAATATCTA+TGG | 0.401734 | 8_2:-35156273 | Msa1245270:exon |
CGACACCATCAAGCTGGATC+TGG | 0.413761 | 8_2:-35156588 | Msa1245270:CDS |
TGATGTTGGGAACGTCGTTA+TGG | 0.422323 | 8_2:-35156534 | Msa1245270:CDS |
GATTTCATCAAATTTGATGT+TGG | 0.427275 | 8_2:-35156548 | Msa1245270:CDS |
GTGGAGACGGAAGCGGCCTT+TGG | 0.434188 | 8_2:+35157174 | None:intergenic |
TTTGTCAAGCATCCAATGCT+TGG | 0.437860 | 8_2:+35158158 | None:intergenic |
TCCTTGTTGACGGCAAAGTC+AGG | 0.447044 | 8_2:-35157911 | Msa1245270:CDS |
CCATCATAGGTGTTGAGGTA+AGG | 0.450382 | 8_2:+35156650 | None:intergenic |
GTGTCGTTAGCCCTGATGAC+GGG | 0.455832 | 8_2:+35156605 | None:intergenic |
CATTGGATGCTTGACAAATT+GGG | 0.462746 | 8_2:-35158153 | Msa1245270:CDS |
CAACGACATGTCCTTGTTGA+CGG | 0.463122 | 8_2:-35157921 | Msa1245270:CDS |
TAGCCCTGATGACGGGGTCT+GGG | 0.463997 | 8_2:+35156612 | None:intergenic |
TGATGACGGGGTCTGGGTAG+CGG | 0.470305 | 8_2:+35156618 | None:intergenic |
CAAGAACAGAGAAAAGCATA+AGG | 0.471422 | 8_2:-35156474 | Msa1245270:CDS |
TGAGAATAGCAATGACTTCA+CGG | 0.475445 | 8_2:+35157946 | None:intergenic |
AGCTTAATACCCTTACCCTT+GGG | 0.483433 | 8_2:+35156344 | None:intergenic |
GGTATCTCTTCCCAAGGGTA+AGG | 0.487613 | 8_2:-35156354 | Msa1245270:CDS |
CATCATAGGTGTTGAGGTAA+GGG | 0.493139 | 8_2:+35156651 | None:intergenic |
TTACAGTCATCGAGGAAGCT+AGG | 0.496234 | 8_2:-35156322 | Msa1245270:CDS |
AAGCTTAATACCCTTACCCT+TGG | 0.502359 | 8_2:+35156343 | None:intergenic |
CTTTGATTTCATAATCAACC+AGG | 0.504163 | 8_2:+35155876 | None:intergenic |
CCTTACCTCAACACCTATGA+TGG | 0.507112 | 8_2:-35156650 | Msa1245270:CDS |
GGCACCAGTGCCTAGTCACC+TGG | 0.509421 | 8_2:-35155894 | Msa1245270:intron |
TAGGCTCCAAAACCCTCGTC+AGG | 0.512287 | 8_2:-35158041 | Msa1245270:CDS |
ACTTATCCAGCTGGATTCAT+GGG | 0.514100 | 8_2:-35157879 | Msa1245270:intron |
TTCATACCCATGAATCCAGC+TGG | 0.521349 | 8_2:+35157873 | None:intergenic |
GGCTAACGACACCATCAAGC+TGG | 0.526110 | 8_2:-35156594 | Msa1245270:CDS |
TTGGGAAGGGCACAAAGCCA+TGG | 0.530959 | 8_2:-35156376 | Msa1245270:CDS |
CAATGTGTTTACTATTGGGA+AGG | 0.534517 | 8_2:-35156390 | Msa1245270:CDS |
CATCTCTGACTGAGTGGAGA+CGG | 0.537807 | 8_2:+35157161 | None:intergenic |
ATTCGAGACAATCCACGTTC+AGG | 0.539354 | 8_2:-35156447 | Msa1245270:CDS |
TCATCGAGGAAGCTAGGAAG+AGG | 0.541078 | 8_2:-35156316 | Msa1245270:CDS |
TCAGTGCAATTTGGGCAGAA+AGG | 0.544106 | 8_2:-35156677 | Msa1245270:CDS |
TGCAGCAGCCTCCACACTTG+AGG | 0.544564 | 8_2:-35158559 | None:intergenic |
TCATGAGTTTGCAACTCGGT+TGG | 0.546330 | 8_2:-35156414 | Msa1245270:CDS |
TCATAATCAACCAGGTGACT+AGG | 0.551117 | 8_2:+35155884 | None:intergenic |
AGATTTGTGTGGTCCTGACG+AGG | 0.555265 | 8_2:+35158028 | None:intergenic |
CTGGTTGATTATGAAATCAA+AGG | 0.559820 | 8_2:-35155875 | Msa1245270:three_prime_UTR |
TGTCAAGCATCCAATGCTTG+GGG | 0.568821 | 8_2:+35158160 | None:intergenic |
CACCATCAAGCTGGATCTGG+AGG | 0.579233 | 8_2:-35156585 | Msa1245270:CDS |
TGCGACCATCATAGGTGTTG+AGG | 0.581929 | 8_2:+35156645 | None:intergenic |
GCCATGGGTATCTCTTCCCA+AGG | 0.583131 | 8_2:-35156360 | Msa1245270:CDS |
CCGGTCATGAGTTTGCAACT+CGG | 0.585600 | 8_2:-35156418 | Msa1245270:CDS |
TTTCGCAAAATCAGAATGAG+TGG | 0.587385 | 8_2:+35157993 | None:intergenic |
GTCAGGACCACACAAATCTA+GGG | 0.588053 | 8_2:-35158024 | Msa1245270:CDS |
GATTGAAGAAGCATTTGAAG+AGG | 0.590583 | 8_2:-35158191 | Msa1245270:CDS |
GATTTGTGTGGTCCTGACGA+GGG | 0.594605 | 8_2:+35158029 | None:intergenic |
AAGAACAGAGAAAAGCATAA+GGG | 0.598361 | 8_2:-35156473 | Msa1245270:CDS |
GTATCTCTTCCCAAGGGTAA+GGG | 0.600286 | 8_2:-35156353 | Msa1245270:CDS |
TGGGAAGGGCACAAAGCCAT+GGG | 0.601941 | 8_2:-35156375 | Msa1245270:CDS |
GGTGTCGTTAGCCCTGATGA+CGG | 0.604149 | 8_2:+35156604 | None:intergenic |
CCGAGTTGCAAACTCATGAC+CGG | 0.605451 | 8_2:+35156418 | None:intergenic |
AGTCAGAGATGACGAGGCAA+AGG | 0.606178 | 8_2:-35157149 | Msa1245270:intron |
TCCTGACTTTGCCGTCAACA+AGG | 0.608758 | 8_2:+35157910 | None:intergenic |
AATGTGTTTACTATTGGGAA+GGG | 0.610874 | 8_2:-35156389 | Msa1245270:CDS |
GACCGGTGGCATCCTGAACG+TGG | 0.612066 | 8_2:+35156435 | None:intergenic |
CTACCCAGACCCCGTCATCA+GGG | 0.613237 | 8_2:-35156615 | Msa1245270:CDS |
CCTCGTCATCTCTGACTGAG+TGG | 0.618913 | 8_2:+35157155 | None:intergenic |
ACTGACAAGACTTATCCAGC+TGG | 0.621794 | 8_2:-35157888 | Msa1245270:CDS |
CTTTGGTGTCATAAAGCAGA+CGG | 0.627128 | 8_2:+35157191 | None:intergenic |
TGACTGAGTGGAGACGGAAG+CGG | 0.632899 | 8_2:+35157167 | None:intergenic |
CCACTCAGTCAGAGATGACG+AGG | 0.634643 | 8_2:-35157155 | Msa1245270:CDS |
CATCGAGGAAGCTAGGAAGA+GGG | 0.635832 | 8_2:-35156315 | Msa1245270:CDS |
ATCCACGTTCAGGATGCCAC+CGG | 0.637259 | 8_2:-35156437 | Msa1245270:CDS |
TGTCGTTAGCCCTGATGACG+GGG | 0.637880 | 8_2:+35156606 | None:intergenic |
GTTACTGGTGGTAAGAATAG+GGG | 0.641635 | 8_2:-35156512 | Msa1245270:CDS |
AAAAGAAACCTCAAGTGTGG+AGG | 0.644602 | 8_2:+35158551 | None:intergenic |
ATGTGAATGTAACAGGCTAG+AGG | 0.650282 | 8_2:-35158213 | Msa1245270:intron |
GTCAAGCATCCAATGCTTGG+GGG | 0.650283 | 8_2:+35158161 | None:intergenic |
ATGGCAGTTCAAGCTCTGCA+AGG | 0.650875 | 8_2:-35156705 | Msa1245270:intron |
CCCTTGGGAAGAGATACCCA+TGG | 0.652851 | 8_2:+35156359 | None:intergenic |
AGACATTCCCTAGATTTGTG+TGG | 0.654592 | 8_2:+35158017 | None:intergenic |
CGTCTGCTTTATGACACCAA+AGG | 0.664626 | 8_2:-35157190 | Msa1245270:CDS |
AACGTCGTTATGGTTACTGG+TGG | 0.680138 | 8_2:-35156524 | Msa1245270:CDS |
CCATGGGTATCTCTTCCCAA+GGG | 0.685421 | 8_2:-35156359 | Msa1245270:CDS |
TGGATGCTTGACAAATTGGG+TGG | 0.687057 | 8_2:-35158150 | Msa1245270:CDS |
TTACTGGTGGTAAGAATAGG+GGG | 0.688676 | 8_2:-35156511 | Msa1245270:CDS |
AGTTGCAAACTCATGACCGG+TGG | 0.693569 | 8_2:+35156421 | None:intergenic |
TATTAAGCTTACAGTCATCG+AGG | 0.723795 | 8_2:-35156330 | Msa1245270:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CATATATATCAAACAAAATA+AGG | + | chr8_2:35156200-35156219 | None:intergenic | 15.0% |
!! | TTCTAATTCATATAATAACA+CGG | + | chr8_2:35157635-35157654 | None:intergenic | 15.0% |
!!! | TTGAATATCTTTATCAATTT+TGG | - | chr8_2:35158217-35158236 | Msa1245270:intron | 15.0% |
!!! | TTTATTTTCATCTTATCAAA+AGG | - | chr8_2:35158358-35158377 | Msa1245270:intron | 15.0% |
!! | TTATAAACAGATTGTGAATA+TGG | + | chr8_2:35156036-35156055 | None:intergenic | 20.0% |
!!! | AATCATCAATTTTTTTACCA+AGG | + | chr8_2:35156618-35156637 | None:intergenic | 20.0% |
!! | GCTATAATACATCAAAAATA+AGG | + | chr8_2:35156655-35156674 | None:intergenic | 20.0% |
!!! | TATTTTTGATGTATTATAGC+TGG | - | chr8_2:35156655-35156674 | Msa1245270:CDS | 20.0% |
!!! | ATTTTTGATGTATTATAGCT+GGG | - | chr8_2:35156656-35156675 | Msa1245270:CDS | 20.0% |
!!! | GTAAAAGGTATATTTGTATA+GGG | - | chr8_2:35156687-35156706 | Msa1245270:CDS | 20.0% |
!! | TTGTATGATATTCTGTATTA+TGG | - | chr8_2:35157099-35157118 | Msa1245270:intron | 20.0% |
!! | TATAGTATTTAATTATGCGT+CGG | - | chr8_2:35157440-35157459 | Msa1245270:intron | 20.0% |
!! | ATAAAAATGGCATGATTAAA+CGG | + | chr8_2:35157610-35157629 | None:intergenic | 20.0% |
!! | ATTTCATCAAATTTGATGTT+GGG | - | chr8_2:35157883-35157902 | Msa1245270:CDS | 20.0% |
!! | TTTTCAATCTCATTTCGTAA+TGG | - | chr8_2:35156006-35156025 | Msa1245270:intron | 25.0% |
! | TTATATAAGTAGATCCAAAC+AGG | - | chr8_2:35156173-35156192 | Msa1245270:three_prime_UTR | 25.0% |
! | GATATATATGTGAATGTAAC+AGG | - | chr8_2:35156210-35156229 | Msa1245270:three_prime_UTR | 25.0% |
!! | GATTGATGTGAATTTTGTAT+AGG | - | chr8_2:35156370-35156389 | Msa1245270:CDS | 25.0% |
!! | GGTAAAAGGTATATTTGTAT+AGG | - | chr8_2:35156686-35156705 | Msa1245270:CDS | 25.0% |
!!! | ATATTTGTATAGGGTATTGA+AGG | - | chr8_2:35156696-35156715 | Msa1245270:CDS | 25.0% |
! | ATTGAAGGTGAAGTTTAATA+AGG | - | chr8_2:35156711-35156730 | Msa1245270:intron | 25.0% |
! | TTGAAGGTGAAGTTTAATAA+GGG | - | chr8_2:35156712-35156731 | Msa1245270:intron | 25.0% |
! | CAAAATATGCATAATCCAAA+CGG | - | chr8_2:35156910-35156929 | Msa1245270:intron | 25.0% |
! | AAAATATGCATAATCCAAAC+GGG | - | chr8_2:35156911-35156930 | Msa1245270:intron | 25.0% |
! | TACATAAATCTTATCAGTGT+CGG | + | chr8_2:35157422-35157441 | None:intergenic | 25.0% |
! | TAATAACACGGACATAAAAA+TGG | + | chr8_2:35157623-35157642 | None:intergenic | 25.0% |
! | ATGAATTAGAATTACAGCAT+TGG | - | chr8_2:35157644-35157663 | Msa1245270:intron | 25.0% |
! | TGAATTAGAATTACAGCATT+GGG | - | chr8_2:35157645-35157664 | Msa1245270:intron | 25.0% |
! | GATTTCATCAAATTTGATGT+TGG | - | chr8_2:35157882-35157901 | Msa1245270:CDS | 25.0% |
!! | TTTTATAATCTGAGCAACTT+TGG | - | chr8_2:35158251-35158270 | Msa1245270:intron | 25.0% |
! | GCTAGAATAATAACAAAAAC+AGG | + | chr8_2:35158299-35158318 | None:intergenic | 25.0% |
!!! | GTTTTTGTTATTATTCTAGC+TGG | - | chr8_2:35158299-35158318 | Msa1245270:intron | 25.0% |
! | AAAACAAAATCAAAAAGGCA+TGG | + | chr8_2:35158497-35158516 | None:intergenic | 25.0% |
! | GAGGTAAAACAAAATCAAAA+AGG | + | chr8_2:35158502-35158521 | None:intergenic | 25.0% |
CTGCTTAACATAAAATTCAG+TGG | + | chr8_2:35156068-35156087 | None:intergenic | 30.0% | |
AAACAAAATAAGGACCTGTT+TGG | + | chr8_2:35156190-35156209 | None:intergenic | 30.0% | |
AAAATAAGCCTAATCCAAAC+AGG | + | chr8_2:35156738-35156757 | None:intergenic | 30.0% | |
! | TTTGCAATGTTTTTCATGTC+TGG | - | chr8_2:35157030-35157049 | Msa1245270:intron | 30.0% |
! | AAGTTCTGACTCATTTGATT+TGG | - | chr8_2:35157127-35157146 | Msa1245270:intron | 30.0% |
GATATTCAGTAAGCAAATGA+AGG | + | chr8_2:35157309-35157328 | None:intergenic | 30.0% | |
AACATTCATGATATGAAGCA+TGG | + | chr8_2:35157517-35157536 | None:intergenic | 30.0% | |
! | AAGAACAGAGAAAAGCATAA+GGG | - | chr8_2:35157957-35157976 | Msa1245270:CDS | 30.0% |
TTGGTCAATGTGTTTACTAT+TGG | - | chr8_2:35158035-35158054 | Msa1245270:CDS | 30.0% | |
TGGTCAATGTGTTTACTATT+GGG | - | chr8_2:35158036-35158055 | Msa1245270:CDS | 30.0% | |
AATGTGTTTACTATTGGGAA+GGG | - | chr8_2:35158041-35158060 | Msa1245270:CDS | 30.0% | |
! | AGTTGCTGCTTAAATATCTA+TGG | - | chr8_2:35158157-35158176 | Msa1245270:CDS | 30.0% |
! | ATTCTAGCTGGATATTGTAT+TGG | - | chr8_2:35158311-35158330 | Msa1245270:intron | 30.0% |
GGAGAACAAAAATCAATCAA+AGG | + | chr8_2:35158430-35158449 | None:intergenic | 30.0% | |
!!! | TGGTGATTGTTTTGAAATCA+AGG | + | chr8_2:35158477-35158496 | None:intergenic | 30.0% |
! | CTTTGATTTCATAATCAACC+AGG | + | chr8_2:35158557-35158576 | None:intergenic | 30.0% |
AGAAAAAGAAACCTCAAGTG+TGG | + | chr8_2:35155885-35155904 | None:intergenic | 35.0% | |
! | TTTCTTTTTCTCTCTAGCGT+TGG | - | chr8_2:35155894-35155913 | Msa1245270:intron | 35.0% |
GCTCTGTTAATCTCACAATA+TGG | - | chr8_2:35155928-35155947 | Msa1245270:intron | 35.0% | |
!! | GATTGAAGAAGCATTTGAAG+AGG | - | chr8_2:35156239-35156258 | Msa1245270:three_prime_UTR | 35.0% |
CATTGGATGCTTGACAAATT+GGG | - | chr8_2:35156277-35156296 | Msa1245270:exon | 35.0% | |
TTTCGCAAAATCAGAATGAG+TGG | + | chr8_2:35156440-35156459 | None:intergenic | 35.0% | |
TGAGAATAGCAATGACTTCA+CGG | + | chr8_2:35156487-35156506 | None:intergenic | 35.0% | |
TTTGTGCAGTTAATATGCCT+TGG | - | chr8_2:35156598-35156617 | Msa1245270:CDS | 35.0% | |
! | GTATTATAGCTGGGTATTGT+AGG | - | chr8_2:35156665-35156684 | Msa1245270:CDS | 35.0% |
AAGTTTAATAAGGGCCTGTT+TGG | - | chr8_2:35156721-35156740 | Msa1245270:intron | 35.0% | |
TTGTCTTCAGATAAAGCCAT+GGG | + | chr8_2:35156952-35156971 | None:intergenic | 35.0% | |
TTTGTCTTCAGATAAAGCCA+TGG | + | chr8_2:35156953-35156972 | None:intergenic | 35.0% | |
GCTTTATCTGAAGACAAAAC+AGG | - | chr8_2:35156955-35156974 | Msa1245270:intron | 35.0% | |
TTCCTTGTATGTGATGTACA+TGG | - | chr8_2:35157706-35157725 | Msa1245270:intron | 35.0% | |
! | CAAGAACAGAGAAAAGCATA+AGG | - | chr8_2:35157956-35157975 | Msa1245270:CDS | 35.0% |
CAATGTGTTTACTATTGGGA+AGG | - | chr8_2:35158040-35158059 | Msa1245270:CDS | 35.0% | |
TATTAAGCTTACAGTCATCG+AGG | - | chr8_2:35158100-35158119 | Msa1245270:intron | 35.0% | |
GAAATCAAGGCTTCAGAATT+GGG | + | chr8_2:35158464-35158483 | None:intergenic | 35.0% | |
TGAAATCAAGGCTTCAGAAT+TGG | + | chr8_2:35158465-35158484 | None:intergenic | 35.0% | |
AAAAGAAACCTCAAGTGTGG+AGG | + | chr8_2:35155882-35155901 | None:intergenic | 40.0% | |
ATGTGAATGTAACAGGCTAG+AGG | - | chr8_2:35156217-35156236 | Msa1245270:three_prime_UTR | 40.0% | |
TTGTCAAGCATCCAATGCTT+GGG | + | chr8_2:35156274-35156293 | None:intergenic | 40.0% | |
TTTGTCAAGCATCCAATGCT+TGG | + | chr8_2:35156275-35156294 | None:intergenic | 40.0% | |
GCATTGGATGCTTGACAAAT+TGG | - | chr8_2:35156276-35156295 | Msa1245270:exon | 40.0% | |
AGACATTCCCTAGATTTGTG+TGG | + | chr8_2:35156416-35156435 | None:intergenic | 40.0% | |
ACTTATCCAGCTGGATTCAT+GGG | - | chr8_2:35156551-35156570 | Msa1245270:CDS | 40.0% | |
! | AGCTGGGTATTGTAGGTAAA+AGG | - | chr8_2:35156672-35156691 | Msa1245270:CDS | 40.0% |
AATAAGGGCCTGTTTGGATT+AGG | - | chr8_2:35156727-35156746 | Msa1245270:intron | 40.0% | |
AGCCATGGGATTCCATTATT+CGG | + | chr8_2:35156938-35156957 | None:intergenic | 40.0% | |
!! | TGACTCATTTGATTTGGCTG+TGG | - | chr8_2:35157133-35157152 | Msa1245270:intron | 40.0% |
!!! | GGAAGCTCTCATTTGTTTTG+GGG | + | chr8_2:35157221-35157240 | None:intergenic | 40.0% |
!! | CGGAAGCTCTCATTTGTTTT+GGG | + | chr8_2:35157222-35157241 | None:intergenic | 40.0% |
! | ACGGAAGCTCTCATTTGTTT+TGG | + | chr8_2:35157223-35157242 | None:intergenic | 40.0% |
!! | CTTTGGTGTCATAAAGCAGA+CGG | + | chr8_2:35157242-35157261 | None:intergenic | 40.0% |
!! | ACGAAGCACTGATTCTGATA+CGG | - | chr8_2:35157372-35157391 | Msa1245270:intron | 40.0% |
GATATGAAGCATGGACACAA+CGG | + | chr8_2:35157508-35157527 | None:intergenic | 40.0% | |
GCATGATTAAACGGTGTACT+AGG | + | chr8_2:35157601-35157620 | None:intergenic | 40.0% | |
TGCCATGTACATCACATACA+AGG | + | chr8_2:35157711-35157730 | None:intergenic | 40.0% | |
AAGGTTCGTTCAGTGCAATT+TGG | - | chr8_2:35157744-35157763 | Msa1245270:intron | 40.0% | |
AGGTTCGTTCAGTGCAATTT+GGG | - | chr8_2:35157745-35157764 | Msa1245270:intron | 40.0% | |
!! | CATCATAGGTGTTGAGGTAA+GGG | + | chr8_2:35157782-35157801 | None:intergenic | 40.0% |
TGGTTACTGGTGGTAAGAAT+AGG | - | chr8_2:35157916-35157935 | Msa1245270:CDS | 40.0% | |
GGTTACTGGTGGTAAGAATA+GGG | - | chr8_2:35157917-35157936 | Msa1245270:CDS | 40.0% | |
GTTACTGGTGGTAAGAATAG+GGG | - | chr8_2:35157918-35157937 | Msa1245270:CDS | 40.0% | |
TTACTGGTGGTAAGAATAGG+GGG | - | chr8_2:35157919-35157938 | Msa1245270:CDS | 40.0% | |
AGCTTAATACCCTTACCCTT+GGG | + | chr8_2:35158089-35158108 | None:intergenic | 40.0% | |
AAGCTTAATACCCTTACCCT+TGG | + | chr8_2:35158090-35158109 | None:intergenic | 40.0% | |
TTACCTCATGTCAATGCTCA+AGG | - | chr8_2:35158515-35158534 | Msa1245270:five_prime_UTR | 40.0% | |
TCATAATCAACCAGGTGACT+AGG | + | chr8_2:35158549-35158568 | None:intergenic | 40.0% | |
!! | CTCTCTAGCGTTGGAACTTT+TGG | - | chr8_2:35155903-35155922 | Msa1245270:intron | 45.0% |
TGTCAAGCATCCAATGCTTG+GGG | + | chr8_2:35156273-35156292 | None:intergenic | 45.0% | |
TGGATGCTTGACAAATTGGG+TGG | - | chr8_2:35156280-35156299 | Msa1245270:exon | 45.0% | |
GTCAGGACCACACAAATCTA+GGG | - | chr8_2:35156406-35156425 | Msa1245270:CDS | 45.0% | |
CAACGACATGTCCTTGTTGA+CGG | - | chr8_2:35156509-35156528 | Msa1245270:CDS | 45.0% | |
ACTGACAAGACTTATCCAGC+TGG | - | chr8_2:35156542-35156561 | Msa1245270:CDS | 45.0% | |
GACTTATCCAGCTGGATTCA+TGG | - | chr8_2:35156550-35156569 | Msa1245270:CDS | 45.0% | |
TTCATACCCATGAATCCAGC+TGG | + | chr8_2:35156560-35156579 | None:intergenic | 45.0% | |
ATCCAAACGGGTCCGAATAA+TGG | - | chr8_2:35156923-35156942 | Msa1245270:intron | 45.0% | |
TTCCATTATTCGGACCCGTT+TGG | + | chr8_2:35156928-35156947 | None:intergenic | 45.0% | |
! | GTCCGAATAATGGAATCCCA+TGG | - | chr8_2:35156933-35156952 | Msa1245270:intron | 45.0% |
CGTCTGCTTTATGACACCAA+AGG | - | chr8_2:35157240-35157259 | Msa1245270:intron | 45.0% | |
GTATCAGAATCAGTGCTTCG+TGG | + | chr8_2:35157373-35157392 | None:intergenic | 45.0% | |
GTTTAGGCATGTTCCAGTGT+TGG | + | chr8_2:35157475-35157494 | None:intergenic | 45.0% | |
CAACGGACATTGCTCAGTTT+AGG | + | chr8_2:35157491-35157510 | None:intergenic | 45.0% | |
TCAGTGCAATTTGGGCAGAA+AGG | - | chr8_2:35157753-35157772 | Msa1245270:intron | 45.0% | |
!! | CCATCATAGGTGTTGAGGTA+AGG | + | chr8_2:35157783-35157802 | None:intergenic | 45.0% |
CCTTACCTCAACACCTATGA+TGG | - | chr8_2:35157780-35157799 | Msa1245270:intron | 45.0% | |
TGATGTTGGGAACGTCGTTA+TGG | - | chr8_2:35157896-35157915 | Msa1245270:CDS | 45.0% | |
AACGTCGTTATGGTTACTGG+TGG | - | chr8_2:35157906-35157925 | Msa1245270:CDS | 45.0% | |
ATTCGAGACAATCCACGTTC+AGG | - | chr8_2:35157983-35158002 | Msa1245270:CDS | 45.0% | |
TCATGAGTTTGCAACTCGGT+TGG | - | chr8_2:35158016-35158035 | Msa1245270:CDS | 45.0% | |
GTATCTCTTCCCAAGGGTAA+GGG | - | chr8_2:35158077-35158096 | Msa1245270:intron | 45.0% | |
TTACAGTCATCGAGGAAGCT+AGG | - | chr8_2:35158108-35158127 | Msa1245270:intron | 45.0% | |
GCTCTCGTTATGTCATCAAC+TGG | + | chr8_2:35158384-35158403 | None:intergenic | 45.0% | |
AGGCTTCAGAATTGGGCATT+AGG | + | chr8_2:35158457-35158476 | None:intergenic | 45.0% | |
GTCAAGCATCCAATGCTTGG+GGG | + | chr8_2:35156272-35156291 | None:intergenic | 50.0% | |
GATTTGTGTGGTCCTGACGA+GGG | + | chr8_2:35156404-35156423 | None:intergenic | 50.0% | |
AGATTTGTGTGGTCCTGACG+AGG | + | chr8_2:35156405-35156424 | None:intergenic | 50.0% | |
CGTCAGGACCACACAAATCT+AGG | - | chr8_2:35156405-35156424 | Msa1245270:CDS | 50.0% | |
TCCTTGTTGACGGCAAAGTC+AGG | - | chr8_2:35156519-35156538 | Msa1245270:CDS | 50.0% | |
TCCTGACTTTGCCGTCAACA+AGG | + | chr8_2:35156523-35156542 | None:intergenic | 50.0% | |
CATCTCTGACTGAGTGGAGA+CGG | + | chr8_2:35157272-35157291 | None:intergenic | 50.0% | |
AGTCAGAGATGACGAGGCAA+AGG | - | chr8_2:35157281-35157300 | Msa1245270:intron | 50.0% | |
TCTGATACGGACACACGACA+CGG | - | chr8_2:35157385-35157404 | Msa1245270:intron | 50.0% | |
!! | TCGGTGTCAAACACCAACAC+TGG | - | chr8_2:35157459-35157478 | Msa1245270:intron | 50.0% |
ATGGCAGTTCAAGCTCTGCA+AGG | - | chr8_2:35157725-35157744 | Msa1245270:intron | 50.0% | |
! | TGCGACCATCATAGGTGTTG+AGG | + | chr8_2:35157788-35157807 | None:intergenic | 50.0% |
TTCCTCCAGATCCAGCTTGA+TGG | + | chr8_2:35157850-35157869 | None:intergenic | 50.0% | |
GGGAACGTCGTTATGGTTAC+TGG | - | chr8_2:35157903-35157922 | Msa1245270:CDS | 50.0% | |
AGTTGCAAACTCATGACCGG+TGG | + | chr8_2:35158012-35158031 | None:intergenic | 50.0% | |
CCGAGTTGCAAACTCATGAC+CGG | + | chr8_2:35158015-35158034 | None:intergenic | 50.0% | |
CCGGTCATGAGTTTGCAACT+CGG | - | chr8_2:35158012-35158031 | Msa1245270:CDS | 50.0% | |
CCATGGGTATCTCTTCCCAA+GGG | - | chr8_2:35158071-35158090 | Msa1245270:intron | 50.0% | |
GGTATCTCTTCCCAAGGGTA+AGG | - | chr8_2:35158076-35158095 | Msa1245270:intron | 50.0% | |
TCATCGAGGAAGCTAGGAAG+AGG | - | chr8_2:35158114-35158133 | Msa1245270:intron | 50.0% | |
CATCGAGGAAGCTAGGAAGA+GGG | - | chr8_2:35158115-35158134 | Msa1245270:intron | 50.0% | |
CAGAATTGGGCATTAGGCAG+AGG | + | chr8_2:35158451-35158470 | None:intergenic | 50.0% | |
!! | GTGCCTTGAGCATTGACATG+AGG | + | chr8_2:35158521-35158540 | None:intergenic | 50.0% |
TAGGCTCCAAAACCCTCGTC+AGG | - | chr8_2:35156389-35156408 | Msa1245270:CDS | 55.0% | |
! | TGTGGTCCTGACGAGGGTTT+TGG | + | chr8_2:35156398-35156417 | None:intergenic | 55.0% |
TGACTGAGTGGAGACGGAAG+CGG | + | chr8_2:35157266-35157285 | None:intergenic | 55.0% | |
CCTCGTCATCTCTGACTGAG+TGG | + | chr8_2:35157278-35157297 | None:intergenic | 55.0% | |
CCACTCAGTCAGAGATGACG+AGG | - | chr8_2:35157275-35157294 | Msa1245270:intron | 55.0% | |
! | GCGGATTGTGCGACCATCAT+AGG | + | chr8_2:35157796-35157815 | None:intergenic | 55.0% |
! | TGTCGTTAGCCCTGATGACG+GGG | + | chr8_2:35157827-35157846 | None:intergenic | 55.0% |
! | GTGTCGTTAGCCCTGATGAC+GGG | + | chr8_2:35157828-35157847 | None:intergenic | 55.0% |
!! | GGTGTCGTTAGCCCTGATGA+CGG | + | chr8_2:35157829-35157848 | None:intergenic | 55.0% |
GGCTAACGACACCATCAAGC+TGG | - | chr8_2:35157836-35157855 | Msa1245270:intron | 55.0% | |
CGACACCATCAAGCTGGATC+TGG | - | chr8_2:35157842-35157861 | Msa1245270:intron | 55.0% | |
CACCATCAAGCTGGATCTGG+AGG | - | chr8_2:35157845-35157864 | Msa1245270:intron | 55.0% | |
! | GGTAAGAATAGGGGGCGTGT+TGG | - | chr8_2:35157927-35157946 | Msa1245270:CDS | 55.0% |
ATCCACGTTCAGGATGCCAC+CGG | - | chr8_2:35157993-35158012 | Msa1245270:CDS | 55.0% | |
! | TTGGGAAGGGCACAAAGCCA+TGG | - | chr8_2:35158054-35158073 | Msa1245270:intron | 55.0% |
! | TGGGAAGGGCACAAAGCCAT+GGG | - | chr8_2:35158055-35158074 | Msa1245270:intron | 55.0% |
GCCATGGGTATCTCTTCCCA+AGG | - | chr8_2:35158070-35158089 | Msa1245270:intron | 55.0% | |
CCCTTGGGAAGAGATACCCA+TGG | + | chr8_2:35158074-35158093 | None:intergenic | 55.0% | |
TCAACCAGGTGACTAGGCAC+TGG | + | chr8_2:35158543-35158562 | None:intergenic | 55.0% | |
GGCTCAATGCCCCCAAGCAT+TGG | - | chr8_2:35156260-35156279 | Msa1245270:three_prime_UTR | 60.0% | |
!! | TGATGACGGGGTCTGGGTAG+CGG | + | chr8_2:35157815-35157834 | None:intergenic | 60.0% |
CTACCCAGACCCCGTCATCA+GGG | - | chr8_2:35157815-35157834 | Msa1245270:intron | 60.0% | |
!! | TAGCCCTGATGACGGGGTCT+GGG | + | chr8_2:35157821-35157840 | None:intergenic | 60.0% |
!! | TTAGCCCTGATGACGGGGTC+TGG | + | chr8_2:35157822-35157841 | None:intergenic | 60.0% |
GTGGAGACGGAAGCGGCCTT+TGG | + | chr8_2:35157259-35157278 | None:intergenic | 65.0% | |
GCTACCCAGACCCCGTCATC+AGG | - | chr8_2:35157814-35157833 | Msa1245270:intron | 65.0% | |
GACCGGTGGCATCCTGAACG+TGG | + | chr8_2:35157998-35158017 | None:intergenic | 65.0% | |
GGCACCAGTGCCTAGTCACC+TGG | - | chr8_2:35158536-35158555 | Msa1245270:five_prime_UTR | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 35155875 | 35158577 | 35155875 | ID=Msa1245270;Name=Msa1245270 |
chr8_2 | mRNA | 35155875 | 35158577 | 35155875 | ID=Msa1245270-mRNA-1;Parent=Msa1245270;Name=Msa1245270-mRNA-1;_AED=0.08;_eAED=0.08;_QI=72|1|1|1|0.6|0.5|6|232|265 |
chr8_2 | exon | 35155875 | 35155908 | 35155875 | ID=Msa1245270-mRNA-1:exon:11136;Parent=Msa1245270-mRNA-1 |
chr8_2 | exon | 35156085 | 35156720 | 35156085 | ID=Msa1245270-mRNA-1:exon:11135;Parent=Msa1245270-mRNA-1 |
chr8_2 | exon | 35157150 | 35157247 | 35157150 | ID=Msa1245270-mRNA-1:exon:11134;Parent=Msa1245270-mRNA-1 |
chr8_2 | exon | 35157880 | 35158060 | 35157880 | ID=Msa1245270-mRNA-1:exon:11133;Parent=Msa1245270-mRNA-1 |
chr8_2 | exon | 35158143 | 35158220 | 35158143 | ID=Msa1245270-mRNA-1:exon:11132;Parent=Msa1245270-mRNA-1 |
chr8_2 | exon | 35158503 | 35158577 | 35158503 | ID=Msa1245270-mRNA-1:exon:11131;Parent=Msa1245270-mRNA-1 |
chr8_2 | five_prime_UTR | 35158506 | 35158577 | 35158506 | ID=Msa1245270-mRNA-1:five_prime_utr;Parent=Msa1245270-mRNA-1 |
chr8_2 | CDS | 35158503 | 35158505 | 35158503 | ID=Msa1245270-mRNA-1:cds;Parent=Msa1245270-mRNA-1 |
chr8_2 | CDS | 35158143 | 35158220 | 35158143 | ID=Msa1245270-mRNA-1:cds;Parent=Msa1245270-mRNA-1 |
chr8_2 | CDS | 35157880 | 35158060 | 35157880 | ID=Msa1245270-mRNA-1:cds;Parent=Msa1245270-mRNA-1 |
chr8_2 | CDS | 35157150 | 35157247 | 35157150 | ID=Msa1245270-mRNA-1:cds;Parent=Msa1245270-mRNA-1 |
chr8_2 | CDS | 35156283 | 35156720 | 35156283 | ID=Msa1245270-mRNA-1:cds;Parent=Msa1245270-mRNA-1 |
chr8_2 | three_prime_UTR | 35156085 | 35156282 | 35156085 | ID=Msa1245270-mRNA-1:three_prime_utr;Parent=Msa1245270-mRNA-1 |
chr8_2 | three_prime_UTR | 35155875 | 35155908 | 35155875 | ID=Msa1245270-mRNA-1:three_prime_utr;Parent=Msa1245270-mRNA-1 |
Gene Sequence |
Protein sequence |