AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1245270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1245270 MtrunA17_Chr5g0403311 100.000 265 0 0 1 265 1 265 0.0 545
Msa1245270 MtrunA17_Chr8g0357951 100.000 265 0 0 1 265 1 265 0.0 545
Msa1245270 MtrunA17_Chr4g0005611 95.094 265 12 1 1 265 1 264 0.0 518
Msa1245270 MtrunA17_Chr7g0243211 94.510 255 14 0 1 255 1 255 0.0 501
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1245270 AT5G07090.1 90.458 262 25 0 1 262 1 262 0.0 506
Msa1245270 AT2G17360.1 90.769 260 24 0 1 260 1 260 0.0 504
Msa1245270 AT5G58420.1 90.076 262 26 0 1 262 1 262 0.0 503
Msa1245270 AT5G07090.3 89.754 244 25 0 19 262 1 244 2.51e-169 468
Msa1245270 AT5G07090.2 89.754 244 25 0 19 262 1 244 2.51e-169 468
Msa1245270 AT2G17360.2 91.160 181 16 0 1 181 1 181 2.71e-125 354

Find 101 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAATATCTTTATCAATTT+TGG 0.092164 8_2:-35156213 Msa1245270:three_prime_UTR
CTCTCTAGCGTTGGAACTTT+TGG 0.169265 8_2:-35158527 Msa1245270:five_prime_UTR
ACGGAAGCTCTCATTTGTTT+TGG 0.257149 8_2:+35157210 None:intergenic
GCATTGGATGCTTGACAAAT+TGG 0.267158 8_2:-35158154 Msa1245270:CDS
TTCCTCCAGATCCAGCTTGA+TGG 0.308982 8_2:+35156583 None:intergenic
TTGGTCAATGTGTTTACTAT+TGG 0.310472 8_2:-35156395 Msa1245270:CDS
AAGGTTCGTTCAGTGCAATT+TGG 0.315956 8_2:-35156686 Msa1245270:CDS
CGTCAGGACCACACAAATCT+AGG 0.320235 8_2:-35158025 Msa1245270:CDS
TGTGGTCCTGACGAGGGTTT+TGG 0.324202 8_2:+35158035 None:intergenic
TTAGCCCTGATGACGGGGTC+TGG 0.331490 8_2:+35156611 None:intergenic
TGGTTACTGGTGGTAAGAAT+AGG 0.355587 8_2:-35156514 Msa1245270:CDS
AGGTTCGTTCAGTGCAATTT+GGG 0.356395 8_2:-35156685 Msa1245270:CDS
GGTTACTGGTGGTAAGAATA+GGG 0.361597 8_2:-35156513 Msa1245270:CDS
GCTACCCAGACCCCGTCATC+AGG 0.361624 8_2:-35156616 Msa1245270:CDS
GGGAACGTCGTTATGGTTAC+TGG 0.369601 8_2:-35156527 Msa1245270:CDS
TGGTCAATGTGTTTACTATT+GGG 0.380101 8_2:-35156394 Msa1245270:CDS
ATTCTAGCTGGATATTGTAT+TGG 0.383832 8_2:-35156119 Msa1245270:three_prime_UTR
TTGTCAAGCATCCAATGCTT+GGG 0.386706 8_2:+35158159 None:intergenic
GCTCTGTTAATCTCACAATA+TGG 0.387866 8_2:-35158502 Msa1245270:intron
ATTTCATCAAATTTGATGTT+GGG 0.389801 8_2:-35156547 Msa1245270:CDS
GCGGATTGTGCGACCATCAT+AGG 0.389914 8_2:+35156637 None:intergenic
GACTTATCCAGCTGGATTCA+TGG 0.391447 8_2:-35157880 Msa1245270:CDS
AGTTGCTGCTTAAATATCTA+TGG 0.401734 8_2:-35156273 Msa1245270:exon
CGACACCATCAAGCTGGATC+TGG 0.413761 8_2:-35156588 Msa1245270:CDS
TGATGTTGGGAACGTCGTTA+TGG 0.422323 8_2:-35156534 Msa1245270:CDS
GATTTCATCAAATTTGATGT+TGG 0.427275 8_2:-35156548 Msa1245270:CDS
GTGGAGACGGAAGCGGCCTT+TGG 0.434188 8_2:+35157174 None:intergenic
TTTGTCAAGCATCCAATGCT+TGG 0.437860 8_2:+35158158 None:intergenic
TCCTTGTTGACGGCAAAGTC+AGG 0.447044 8_2:-35157911 Msa1245270:CDS
CCATCATAGGTGTTGAGGTA+AGG 0.450382 8_2:+35156650 None:intergenic
GTGTCGTTAGCCCTGATGAC+GGG 0.455832 8_2:+35156605 None:intergenic
CATTGGATGCTTGACAAATT+GGG 0.462746 8_2:-35158153 Msa1245270:CDS
CAACGACATGTCCTTGTTGA+CGG 0.463122 8_2:-35157921 Msa1245270:CDS
TAGCCCTGATGACGGGGTCT+GGG 0.463997 8_2:+35156612 None:intergenic
TGATGACGGGGTCTGGGTAG+CGG 0.470305 8_2:+35156618 None:intergenic
CAAGAACAGAGAAAAGCATA+AGG 0.471422 8_2:-35156474 Msa1245270:CDS
TGAGAATAGCAATGACTTCA+CGG 0.475445 8_2:+35157946 None:intergenic
AGCTTAATACCCTTACCCTT+GGG 0.483433 8_2:+35156344 None:intergenic
GGTATCTCTTCCCAAGGGTA+AGG 0.487613 8_2:-35156354 Msa1245270:CDS
CATCATAGGTGTTGAGGTAA+GGG 0.493139 8_2:+35156651 None:intergenic
TTACAGTCATCGAGGAAGCT+AGG 0.496234 8_2:-35156322 Msa1245270:CDS
AAGCTTAATACCCTTACCCT+TGG 0.502359 8_2:+35156343 None:intergenic
CTTTGATTTCATAATCAACC+AGG 0.504163 8_2:+35155876 None:intergenic
CCTTACCTCAACACCTATGA+TGG 0.507112 8_2:-35156650 Msa1245270:CDS
GGCACCAGTGCCTAGTCACC+TGG 0.509421 8_2:-35155894 Msa1245270:intron
TAGGCTCCAAAACCCTCGTC+AGG 0.512287 8_2:-35158041 Msa1245270:CDS
ACTTATCCAGCTGGATTCAT+GGG 0.514100 8_2:-35157879 Msa1245270:intron
TTCATACCCATGAATCCAGC+TGG 0.521349 8_2:+35157873 None:intergenic
GGCTAACGACACCATCAAGC+TGG 0.526110 8_2:-35156594 Msa1245270:CDS
TTGGGAAGGGCACAAAGCCA+TGG 0.530959 8_2:-35156376 Msa1245270:CDS
CAATGTGTTTACTATTGGGA+AGG 0.534517 8_2:-35156390 Msa1245270:CDS
CATCTCTGACTGAGTGGAGA+CGG 0.537807 8_2:+35157161 None:intergenic
ATTCGAGACAATCCACGTTC+AGG 0.539354 8_2:-35156447 Msa1245270:CDS
TCATCGAGGAAGCTAGGAAG+AGG 0.541078 8_2:-35156316 Msa1245270:CDS
TCAGTGCAATTTGGGCAGAA+AGG 0.544106 8_2:-35156677 Msa1245270:CDS
TGCAGCAGCCTCCACACTTG+AGG 0.544564 8_2:-35158559 None:intergenic
TCATGAGTTTGCAACTCGGT+TGG 0.546330 8_2:-35156414 Msa1245270:CDS
TCATAATCAACCAGGTGACT+AGG 0.551117 8_2:+35155884 None:intergenic
AGATTTGTGTGGTCCTGACG+AGG 0.555265 8_2:+35158028 None:intergenic
CTGGTTGATTATGAAATCAA+AGG 0.559820 8_2:-35155875 Msa1245270:three_prime_UTR
TGTCAAGCATCCAATGCTTG+GGG 0.568821 8_2:+35158160 None:intergenic
CACCATCAAGCTGGATCTGG+AGG 0.579233 8_2:-35156585 Msa1245270:CDS
TGCGACCATCATAGGTGTTG+AGG 0.581929 8_2:+35156645 None:intergenic
GCCATGGGTATCTCTTCCCA+AGG 0.583131 8_2:-35156360 Msa1245270:CDS
CCGGTCATGAGTTTGCAACT+CGG 0.585600 8_2:-35156418 Msa1245270:CDS
TTTCGCAAAATCAGAATGAG+TGG 0.587385 8_2:+35157993 None:intergenic
GTCAGGACCACACAAATCTA+GGG 0.588053 8_2:-35158024 Msa1245270:CDS
GATTGAAGAAGCATTTGAAG+AGG 0.590583 8_2:-35158191 Msa1245270:CDS
GATTTGTGTGGTCCTGACGA+GGG 0.594605 8_2:+35158029 None:intergenic
AAGAACAGAGAAAAGCATAA+GGG 0.598361 8_2:-35156473 Msa1245270:CDS
GTATCTCTTCCCAAGGGTAA+GGG 0.600286 8_2:-35156353 Msa1245270:CDS
TGGGAAGGGCACAAAGCCAT+GGG 0.601941 8_2:-35156375 Msa1245270:CDS
GGTGTCGTTAGCCCTGATGA+CGG 0.604149 8_2:+35156604 None:intergenic
CCGAGTTGCAAACTCATGAC+CGG 0.605451 8_2:+35156418 None:intergenic
AGTCAGAGATGACGAGGCAA+AGG 0.606178 8_2:-35157149 Msa1245270:intron
TCCTGACTTTGCCGTCAACA+AGG 0.608758 8_2:+35157910 None:intergenic
AATGTGTTTACTATTGGGAA+GGG 0.610874 8_2:-35156389 Msa1245270:CDS
GACCGGTGGCATCCTGAACG+TGG 0.612066 8_2:+35156435 None:intergenic
CTACCCAGACCCCGTCATCA+GGG 0.613237 8_2:-35156615 Msa1245270:CDS
CCTCGTCATCTCTGACTGAG+TGG 0.618913 8_2:+35157155 None:intergenic
ACTGACAAGACTTATCCAGC+TGG 0.621794 8_2:-35157888 Msa1245270:CDS
CTTTGGTGTCATAAAGCAGA+CGG 0.627128 8_2:+35157191 None:intergenic
TGACTGAGTGGAGACGGAAG+CGG 0.632899 8_2:+35157167 None:intergenic
CCACTCAGTCAGAGATGACG+AGG 0.634643 8_2:-35157155 Msa1245270:CDS
CATCGAGGAAGCTAGGAAGA+GGG 0.635832 8_2:-35156315 Msa1245270:CDS
ATCCACGTTCAGGATGCCAC+CGG 0.637259 8_2:-35156437 Msa1245270:CDS
TGTCGTTAGCCCTGATGACG+GGG 0.637880 8_2:+35156606 None:intergenic
GTTACTGGTGGTAAGAATAG+GGG 0.641635 8_2:-35156512 Msa1245270:CDS
AAAAGAAACCTCAAGTGTGG+AGG 0.644602 8_2:+35158551 None:intergenic
ATGTGAATGTAACAGGCTAG+AGG 0.650282 8_2:-35158213 Msa1245270:intron
GTCAAGCATCCAATGCTTGG+GGG 0.650283 8_2:+35158161 None:intergenic
ATGGCAGTTCAAGCTCTGCA+AGG 0.650875 8_2:-35156705 Msa1245270:intron
CCCTTGGGAAGAGATACCCA+TGG 0.652851 8_2:+35156359 None:intergenic
AGACATTCCCTAGATTTGTG+TGG 0.654592 8_2:+35158017 None:intergenic
CGTCTGCTTTATGACACCAA+AGG 0.664626 8_2:-35157190 Msa1245270:CDS
AACGTCGTTATGGTTACTGG+TGG 0.680138 8_2:-35156524 Msa1245270:CDS
CCATGGGTATCTCTTCCCAA+GGG 0.685421 8_2:-35156359 Msa1245270:CDS
TGGATGCTTGACAAATTGGG+TGG 0.687057 8_2:-35158150 Msa1245270:CDS
TTACTGGTGGTAAGAATAGG+GGG 0.688676 8_2:-35156511 Msa1245270:CDS
AGTTGCAAACTCATGACCGG+TGG 0.693569 8_2:+35156421 None:intergenic
TATTAAGCTTACAGTCATCG+AGG 0.723795 8_2:-35156330 Msa1245270:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATATATATCAAACAAAATA+AGG + chr8_2:35156200-35156219 None:intergenic 15.0%
!! TTCTAATTCATATAATAACA+CGG + chr8_2:35157635-35157654 None:intergenic 15.0%
!!! TTGAATATCTTTATCAATTT+TGG - chr8_2:35158217-35158236 Msa1245270:intron 15.0%
!!! TTTATTTTCATCTTATCAAA+AGG - chr8_2:35158358-35158377 Msa1245270:intron 15.0%
!! TTATAAACAGATTGTGAATA+TGG + chr8_2:35156036-35156055 None:intergenic 20.0%
!!! AATCATCAATTTTTTTACCA+AGG + chr8_2:35156618-35156637 None:intergenic 20.0%
!! GCTATAATACATCAAAAATA+AGG + chr8_2:35156655-35156674 None:intergenic 20.0%
!!! TATTTTTGATGTATTATAGC+TGG - chr8_2:35156655-35156674 Msa1245270:CDS 20.0%
!!! ATTTTTGATGTATTATAGCT+GGG - chr8_2:35156656-35156675 Msa1245270:CDS 20.0%
!!! GTAAAAGGTATATTTGTATA+GGG - chr8_2:35156687-35156706 Msa1245270:CDS 20.0%
!! TTGTATGATATTCTGTATTA+TGG - chr8_2:35157099-35157118 Msa1245270:intron 20.0%
!! TATAGTATTTAATTATGCGT+CGG - chr8_2:35157440-35157459 Msa1245270:intron 20.0%
!! ATAAAAATGGCATGATTAAA+CGG + chr8_2:35157610-35157629 None:intergenic 20.0%
!! ATTTCATCAAATTTGATGTT+GGG - chr8_2:35157883-35157902 Msa1245270:CDS 20.0%
!! TTTTCAATCTCATTTCGTAA+TGG - chr8_2:35156006-35156025 Msa1245270:intron 25.0%
! TTATATAAGTAGATCCAAAC+AGG - chr8_2:35156173-35156192 Msa1245270:three_prime_UTR 25.0%
! GATATATATGTGAATGTAAC+AGG - chr8_2:35156210-35156229 Msa1245270:three_prime_UTR 25.0%
!! GATTGATGTGAATTTTGTAT+AGG - chr8_2:35156370-35156389 Msa1245270:CDS 25.0%
!! GGTAAAAGGTATATTTGTAT+AGG - chr8_2:35156686-35156705 Msa1245270:CDS 25.0%
!!! ATATTTGTATAGGGTATTGA+AGG - chr8_2:35156696-35156715 Msa1245270:CDS 25.0%
! ATTGAAGGTGAAGTTTAATA+AGG - chr8_2:35156711-35156730 Msa1245270:intron 25.0%
! TTGAAGGTGAAGTTTAATAA+GGG - chr8_2:35156712-35156731 Msa1245270:intron 25.0%
! CAAAATATGCATAATCCAAA+CGG - chr8_2:35156910-35156929 Msa1245270:intron 25.0%
! AAAATATGCATAATCCAAAC+GGG - chr8_2:35156911-35156930 Msa1245270:intron 25.0%
! TACATAAATCTTATCAGTGT+CGG + chr8_2:35157422-35157441 None:intergenic 25.0%
! TAATAACACGGACATAAAAA+TGG + chr8_2:35157623-35157642 None:intergenic 25.0%
! ATGAATTAGAATTACAGCAT+TGG - chr8_2:35157644-35157663 Msa1245270:intron 25.0%
! TGAATTAGAATTACAGCATT+GGG - chr8_2:35157645-35157664 Msa1245270:intron 25.0%
! GATTTCATCAAATTTGATGT+TGG - chr8_2:35157882-35157901 Msa1245270:CDS 25.0%
!! TTTTATAATCTGAGCAACTT+TGG - chr8_2:35158251-35158270 Msa1245270:intron 25.0%
! GCTAGAATAATAACAAAAAC+AGG + chr8_2:35158299-35158318 None:intergenic 25.0%
!!! GTTTTTGTTATTATTCTAGC+TGG - chr8_2:35158299-35158318 Msa1245270:intron 25.0%
! AAAACAAAATCAAAAAGGCA+TGG + chr8_2:35158497-35158516 None:intergenic 25.0%
! GAGGTAAAACAAAATCAAAA+AGG + chr8_2:35158502-35158521 None:intergenic 25.0%
CTGCTTAACATAAAATTCAG+TGG + chr8_2:35156068-35156087 None:intergenic 30.0%
AAACAAAATAAGGACCTGTT+TGG + chr8_2:35156190-35156209 None:intergenic 30.0%
AAAATAAGCCTAATCCAAAC+AGG + chr8_2:35156738-35156757 None:intergenic 30.0%
! TTTGCAATGTTTTTCATGTC+TGG - chr8_2:35157030-35157049 Msa1245270:intron 30.0%
! AAGTTCTGACTCATTTGATT+TGG - chr8_2:35157127-35157146 Msa1245270:intron 30.0%
GATATTCAGTAAGCAAATGA+AGG + chr8_2:35157309-35157328 None:intergenic 30.0%
AACATTCATGATATGAAGCA+TGG + chr8_2:35157517-35157536 None:intergenic 30.0%
! AAGAACAGAGAAAAGCATAA+GGG - chr8_2:35157957-35157976 Msa1245270:CDS 30.0%
TTGGTCAATGTGTTTACTAT+TGG - chr8_2:35158035-35158054 Msa1245270:CDS 30.0%
TGGTCAATGTGTTTACTATT+GGG - chr8_2:35158036-35158055 Msa1245270:CDS 30.0%
AATGTGTTTACTATTGGGAA+GGG - chr8_2:35158041-35158060 Msa1245270:CDS 30.0%
! AGTTGCTGCTTAAATATCTA+TGG - chr8_2:35158157-35158176 Msa1245270:CDS 30.0%
! ATTCTAGCTGGATATTGTAT+TGG - chr8_2:35158311-35158330 Msa1245270:intron 30.0%
GGAGAACAAAAATCAATCAA+AGG + chr8_2:35158430-35158449 None:intergenic 30.0%
!!! TGGTGATTGTTTTGAAATCA+AGG + chr8_2:35158477-35158496 None:intergenic 30.0%
! CTTTGATTTCATAATCAACC+AGG + chr8_2:35158557-35158576 None:intergenic 30.0%
AGAAAAAGAAACCTCAAGTG+TGG + chr8_2:35155885-35155904 None:intergenic 35.0%
! TTTCTTTTTCTCTCTAGCGT+TGG - chr8_2:35155894-35155913 Msa1245270:intron 35.0%
GCTCTGTTAATCTCACAATA+TGG - chr8_2:35155928-35155947 Msa1245270:intron 35.0%
!! GATTGAAGAAGCATTTGAAG+AGG - chr8_2:35156239-35156258 Msa1245270:three_prime_UTR 35.0%
CATTGGATGCTTGACAAATT+GGG - chr8_2:35156277-35156296 Msa1245270:exon 35.0%
TTTCGCAAAATCAGAATGAG+TGG + chr8_2:35156440-35156459 None:intergenic 35.0%
TGAGAATAGCAATGACTTCA+CGG + chr8_2:35156487-35156506 None:intergenic 35.0%
TTTGTGCAGTTAATATGCCT+TGG - chr8_2:35156598-35156617 Msa1245270:CDS 35.0%
! GTATTATAGCTGGGTATTGT+AGG - chr8_2:35156665-35156684 Msa1245270:CDS 35.0%
AAGTTTAATAAGGGCCTGTT+TGG - chr8_2:35156721-35156740 Msa1245270:intron 35.0%
TTGTCTTCAGATAAAGCCAT+GGG + chr8_2:35156952-35156971 None:intergenic 35.0%
TTTGTCTTCAGATAAAGCCA+TGG + chr8_2:35156953-35156972 None:intergenic 35.0%
GCTTTATCTGAAGACAAAAC+AGG - chr8_2:35156955-35156974 Msa1245270:intron 35.0%
TTCCTTGTATGTGATGTACA+TGG - chr8_2:35157706-35157725 Msa1245270:intron 35.0%
! CAAGAACAGAGAAAAGCATA+AGG - chr8_2:35157956-35157975 Msa1245270:CDS 35.0%
CAATGTGTTTACTATTGGGA+AGG - chr8_2:35158040-35158059 Msa1245270:CDS 35.0%
TATTAAGCTTACAGTCATCG+AGG - chr8_2:35158100-35158119 Msa1245270:intron 35.0%
GAAATCAAGGCTTCAGAATT+GGG + chr8_2:35158464-35158483 None:intergenic 35.0%
TGAAATCAAGGCTTCAGAAT+TGG + chr8_2:35158465-35158484 None:intergenic 35.0%
AAAAGAAACCTCAAGTGTGG+AGG + chr8_2:35155882-35155901 None:intergenic 40.0%
ATGTGAATGTAACAGGCTAG+AGG - chr8_2:35156217-35156236 Msa1245270:three_prime_UTR 40.0%
TTGTCAAGCATCCAATGCTT+GGG + chr8_2:35156274-35156293 None:intergenic 40.0%
TTTGTCAAGCATCCAATGCT+TGG + chr8_2:35156275-35156294 None:intergenic 40.0%
GCATTGGATGCTTGACAAAT+TGG - chr8_2:35156276-35156295 Msa1245270:exon 40.0%
AGACATTCCCTAGATTTGTG+TGG + chr8_2:35156416-35156435 None:intergenic 40.0%
ACTTATCCAGCTGGATTCAT+GGG - chr8_2:35156551-35156570 Msa1245270:CDS 40.0%
! AGCTGGGTATTGTAGGTAAA+AGG - chr8_2:35156672-35156691 Msa1245270:CDS 40.0%
AATAAGGGCCTGTTTGGATT+AGG - chr8_2:35156727-35156746 Msa1245270:intron 40.0%
AGCCATGGGATTCCATTATT+CGG + chr8_2:35156938-35156957 None:intergenic 40.0%
!! TGACTCATTTGATTTGGCTG+TGG - chr8_2:35157133-35157152 Msa1245270:intron 40.0%
!!! GGAAGCTCTCATTTGTTTTG+GGG + chr8_2:35157221-35157240 None:intergenic 40.0%
!! CGGAAGCTCTCATTTGTTTT+GGG + chr8_2:35157222-35157241 None:intergenic 40.0%
! ACGGAAGCTCTCATTTGTTT+TGG + chr8_2:35157223-35157242 None:intergenic 40.0%
!! CTTTGGTGTCATAAAGCAGA+CGG + chr8_2:35157242-35157261 None:intergenic 40.0%
!! ACGAAGCACTGATTCTGATA+CGG - chr8_2:35157372-35157391 Msa1245270:intron 40.0%
GATATGAAGCATGGACACAA+CGG + chr8_2:35157508-35157527 None:intergenic 40.0%
GCATGATTAAACGGTGTACT+AGG + chr8_2:35157601-35157620 None:intergenic 40.0%
TGCCATGTACATCACATACA+AGG + chr8_2:35157711-35157730 None:intergenic 40.0%
AAGGTTCGTTCAGTGCAATT+TGG - chr8_2:35157744-35157763 Msa1245270:intron 40.0%
AGGTTCGTTCAGTGCAATTT+GGG - chr8_2:35157745-35157764 Msa1245270:intron 40.0%
!! CATCATAGGTGTTGAGGTAA+GGG + chr8_2:35157782-35157801 None:intergenic 40.0%
TGGTTACTGGTGGTAAGAAT+AGG - chr8_2:35157916-35157935 Msa1245270:CDS 40.0%
GGTTACTGGTGGTAAGAATA+GGG - chr8_2:35157917-35157936 Msa1245270:CDS 40.0%
GTTACTGGTGGTAAGAATAG+GGG - chr8_2:35157918-35157937 Msa1245270:CDS 40.0%
TTACTGGTGGTAAGAATAGG+GGG - chr8_2:35157919-35157938 Msa1245270:CDS 40.0%
AGCTTAATACCCTTACCCTT+GGG + chr8_2:35158089-35158108 None:intergenic 40.0%
AAGCTTAATACCCTTACCCT+TGG + chr8_2:35158090-35158109 None:intergenic 40.0%
TTACCTCATGTCAATGCTCA+AGG - chr8_2:35158515-35158534 Msa1245270:five_prime_UTR 40.0%
TCATAATCAACCAGGTGACT+AGG + chr8_2:35158549-35158568 None:intergenic 40.0%
!! CTCTCTAGCGTTGGAACTTT+TGG - chr8_2:35155903-35155922 Msa1245270:intron 45.0%
TGTCAAGCATCCAATGCTTG+GGG + chr8_2:35156273-35156292 None:intergenic 45.0%
TGGATGCTTGACAAATTGGG+TGG - chr8_2:35156280-35156299 Msa1245270:exon 45.0%
GTCAGGACCACACAAATCTA+GGG - chr8_2:35156406-35156425 Msa1245270:CDS 45.0%
CAACGACATGTCCTTGTTGA+CGG - chr8_2:35156509-35156528 Msa1245270:CDS 45.0%
ACTGACAAGACTTATCCAGC+TGG - chr8_2:35156542-35156561 Msa1245270:CDS 45.0%
GACTTATCCAGCTGGATTCA+TGG - chr8_2:35156550-35156569 Msa1245270:CDS 45.0%
TTCATACCCATGAATCCAGC+TGG + chr8_2:35156560-35156579 None:intergenic 45.0%
ATCCAAACGGGTCCGAATAA+TGG - chr8_2:35156923-35156942 Msa1245270:intron 45.0%
TTCCATTATTCGGACCCGTT+TGG + chr8_2:35156928-35156947 None:intergenic 45.0%
! GTCCGAATAATGGAATCCCA+TGG - chr8_2:35156933-35156952 Msa1245270:intron 45.0%
CGTCTGCTTTATGACACCAA+AGG - chr8_2:35157240-35157259 Msa1245270:intron 45.0%
GTATCAGAATCAGTGCTTCG+TGG + chr8_2:35157373-35157392 None:intergenic 45.0%
GTTTAGGCATGTTCCAGTGT+TGG + chr8_2:35157475-35157494 None:intergenic 45.0%
CAACGGACATTGCTCAGTTT+AGG + chr8_2:35157491-35157510 None:intergenic 45.0%
TCAGTGCAATTTGGGCAGAA+AGG - chr8_2:35157753-35157772 Msa1245270:intron 45.0%
!! CCATCATAGGTGTTGAGGTA+AGG + chr8_2:35157783-35157802 None:intergenic 45.0%
CCTTACCTCAACACCTATGA+TGG - chr8_2:35157780-35157799 Msa1245270:intron 45.0%
TGATGTTGGGAACGTCGTTA+TGG - chr8_2:35157896-35157915 Msa1245270:CDS 45.0%
AACGTCGTTATGGTTACTGG+TGG - chr8_2:35157906-35157925 Msa1245270:CDS 45.0%
ATTCGAGACAATCCACGTTC+AGG - chr8_2:35157983-35158002 Msa1245270:CDS 45.0%
TCATGAGTTTGCAACTCGGT+TGG - chr8_2:35158016-35158035 Msa1245270:CDS 45.0%
GTATCTCTTCCCAAGGGTAA+GGG - chr8_2:35158077-35158096 Msa1245270:intron 45.0%
TTACAGTCATCGAGGAAGCT+AGG - chr8_2:35158108-35158127 Msa1245270:intron 45.0%
GCTCTCGTTATGTCATCAAC+TGG + chr8_2:35158384-35158403 None:intergenic 45.0%
AGGCTTCAGAATTGGGCATT+AGG + chr8_2:35158457-35158476 None:intergenic 45.0%
GTCAAGCATCCAATGCTTGG+GGG + chr8_2:35156272-35156291 None:intergenic 50.0%
GATTTGTGTGGTCCTGACGA+GGG + chr8_2:35156404-35156423 None:intergenic 50.0%
AGATTTGTGTGGTCCTGACG+AGG + chr8_2:35156405-35156424 None:intergenic 50.0%
CGTCAGGACCACACAAATCT+AGG - chr8_2:35156405-35156424 Msa1245270:CDS 50.0%
TCCTTGTTGACGGCAAAGTC+AGG - chr8_2:35156519-35156538 Msa1245270:CDS 50.0%
TCCTGACTTTGCCGTCAACA+AGG + chr8_2:35156523-35156542 None:intergenic 50.0%
CATCTCTGACTGAGTGGAGA+CGG + chr8_2:35157272-35157291 None:intergenic 50.0%
AGTCAGAGATGACGAGGCAA+AGG - chr8_2:35157281-35157300 Msa1245270:intron 50.0%
TCTGATACGGACACACGACA+CGG - chr8_2:35157385-35157404 Msa1245270:intron 50.0%
!! TCGGTGTCAAACACCAACAC+TGG - chr8_2:35157459-35157478 Msa1245270:intron 50.0%
ATGGCAGTTCAAGCTCTGCA+AGG - chr8_2:35157725-35157744 Msa1245270:intron 50.0%
! TGCGACCATCATAGGTGTTG+AGG + chr8_2:35157788-35157807 None:intergenic 50.0%
TTCCTCCAGATCCAGCTTGA+TGG + chr8_2:35157850-35157869 None:intergenic 50.0%
GGGAACGTCGTTATGGTTAC+TGG - chr8_2:35157903-35157922 Msa1245270:CDS 50.0%
AGTTGCAAACTCATGACCGG+TGG + chr8_2:35158012-35158031 None:intergenic 50.0%
CCGAGTTGCAAACTCATGAC+CGG + chr8_2:35158015-35158034 None:intergenic 50.0%
CCGGTCATGAGTTTGCAACT+CGG - chr8_2:35158012-35158031 Msa1245270:CDS 50.0%
CCATGGGTATCTCTTCCCAA+GGG - chr8_2:35158071-35158090 Msa1245270:intron 50.0%
GGTATCTCTTCCCAAGGGTA+AGG - chr8_2:35158076-35158095 Msa1245270:intron 50.0%
TCATCGAGGAAGCTAGGAAG+AGG - chr8_2:35158114-35158133 Msa1245270:intron 50.0%
CATCGAGGAAGCTAGGAAGA+GGG - chr8_2:35158115-35158134 Msa1245270:intron 50.0%
CAGAATTGGGCATTAGGCAG+AGG + chr8_2:35158451-35158470 None:intergenic 50.0%
!! GTGCCTTGAGCATTGACATG+AGG + chr8_2:35158521-35158540 None:intergenic 50.0%
TAGGCTCCAAAACCCTCGTC+AGG - chr8_2:35156389-35156408 Msa1245270:CDS 55.0%
! TGTGGTCCTGACGAGGGTTT+TGG + chr8_2:35156398-35156417 None:intergenic 55.0%
TGACTGAGTGGAGACGGAAG+CGG + chr8_2:35157266-35157285 None:intergenic 55.0%
CCTCGTCATCTCTGACTGAG+TGG + chr8_2:35157278-35157297 None:intergenic 55.0%
CCACTCAGTCAGAGATGACG+AGG - chr8_2:35157275-35157294 Msa1245270:intron 55.0%
! GCGGATTGTGCGACCATCAT+AGG + chr8_2:35157796-35157815 None:intergenic 55.0%
! TGTCGTTAGCCCTGATGACG+GGG + chr8_2:35157827-35157846 None:intergenic 55.0%
! GTGTCGTTAGCCCTGATGAC+GGG + chr8_2:35157828-35157847 None:intergenic 55.0%
!! GGTGTCGTTAGCCCTGATGA+CGG + chr8_2:35157829-35157848 None:intergenic 55.0%
GGCTAACGACACCATCAAGC+TGG - chr8_2:35157836-35157855 Msa1245270:intron 55.0%
CGACACCATCAAGCTGGATC+TGG - chr8_2:35157842-35157861 Msa1245270:intron 55.0%
CACCATCAAGCTGGATCTGG+AGG - chr8_2:35157845-35157864 Msa1245270:intron 55.0%
! GGTAAGAATAGGGGGCGTGT+TGG - chr8_2:35157927-35157946 Msa1245270:CDS 55.0%
ATCCACGTTCAGGATGCCAC+CGG - chr8_2:35157993-35158012 Msa1245270:CDS 55.0%
! TTGGGAAGGGCACAAAGCCA+TGG - chr8_2:35158054-35158073 Msa1245270:intron 55.0%
! TGGGAAGGGCACAAAGCCAT+GGG - chr8_2:35158055-35158074 Msa1245270:intron 55.0%
GCCATGGGTATCTCTTCCCA+AGG - chr8_2:35158070-35158089 Msa1245270:intron 55.0%
CCCTTGGGAAGAGATACCCA+TGG + chr8_2:35158074-35158093 None:intergenic 55.0%
TCAACCAGGTGACTAGGCAC+TGG + chr8_2:35158543-35158562 None:intergenic 55.0%
GGCTCAATGCCCCCAAGCAT+TGG - chr8_2:35156260-35156279 Msa1245270:three_prime_UTR 60.0%
!! TGATGACGGGGTCTGGGTAG+CGG + chr8_2:35157815-35157834 None:intergenic 60.0%
CTACCCAGACCCCGTCATCA+GGG - chr8_2:35157815-35157834 Msa1245270:intron 60.0%
!! TAGCCCTGATGACGGGGTCT+GGG + chr8_2:35157821-35157840 None:intergenic 60.0%
!! TTAGCCCTGATGACGGGGTC+TGG + chr8_2:35157822-35157841 None:intergenic 60.0%
GTGGAGACGGAAGCGGCCTT+TGG + chr8_2:35157259-35157278 None:intergenic 65.0%
GCTACCCAGACCCCGTCATC+AGG - chr8_2:35157814-35157833 Msa1245270:intron 65.0%
GACCGGTGGCATCCTGAACG+TGG + chr8_2:35157998-35158017 None:intergenic 65.0%
GGCACCAGTGCCTAGTCACC+TGG - chr8_2:35158536-35158555 Msa1245270:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 35155875 35158577 35155875 ID=Msa1245270;Name=Msa1245270
chr8_2 mRNA 35155875 35158577 35155875 ID=Msa1245270-mRNA-1;Parent=Msa1245270;Name=Msa1245270-mRNA-1;_AED=0.08;_eAED=0.08;_QI=72|1|1|1|0.6|0.5|6|232|265
chr8_2 exon 35155875 35155908 35155875 ID=Msa1245270-mRNA-1:exon:11136;Parent=Msa1245270-mRNA-1
chr8_2 exon 35156085 35156720 35156085 ID=Msa1245270-mRNA-1:exon:11135;Parent=Msa1245270-mRNA-1
chr8_2 exon 35157150 35157247 35157150 ID=Msa1245270-mRNA-1:exon:11134;Parent=Msa1245270-mRNA-1
chr8_2 exon 35157880 35158060 35157880 ID=Msa1245270-mRNA-1:exon:11133;Parent=Msa1245270-mRNA-1
chr8_2 exon 35158143 35158220 35158143 ID=Msa1245270-mRNA-1:exon:11132;Parent=Msa1245270-mRNA-1
chr8_2 exon 35158503 35158577 35158503 ID=Msa1245270-mRNA-1:exon:11131;Parent=Msa1245270-mRNA-1
chr8_2 five_prime_UTR 35158506 35158577 35158506 ID=Msa1245270-mRNA-1:five_prime_utr;Parent=Msa1245270-mRNA-1
chr8_2 CDS 35158503 35158505 35158503 ID=Msa1245270-mRNA-1:cds;Parent=Msa1245270-mRNA-1
chr8_2 CDS 35158143 35158220 35158143 ID=Msa1245270-mRNA-1:cds;Parent=Msa1245270-mRNA-1
chr8_2 CDS 35157880 35158060 35157880 ID=Msa1245270-mRNA-1:cds;Parent=Msa1245270-mRNA-1
chr8_2 CDS 35157150 35157247 35157150 ID=Msa1245270-mRNA-1:cds;Parent=Msa1245270-mRNA-1
chr8_2 CDS 35156283 35156720 35156283 ID=Msa1245270-mRNA-1:cds;Parent=Msa1245270-mRNA-1
chr8_2 three_prime_UTR 35156085 35156282 35156085 ID=Msa1245270-mRNA-1:three_prime_utr;Parent=Msa1245270-mRNA-1
chr8_2 three_prime_UTR 35155875 35155908 35155875 ID=Msa1245270-mRNA-1:three_prime_utr;Parent=Msa1245270-mRNA-1
Gene Sequence

>Msa1245270

ATGGCTAGAGGATTGAAGAAGCATTTGAAGAGGCTCAATGCCCCCAAGCATTGGATGCTTGACAAATTGGGTGGTGCTTTTGCTCCAAAACCCTCGTCAGGACCACACAAATCTAGGGAATGTCTTCCACTCATTCTGATTTTGCGAAACAGATTGAAGTATGCGCTGACATACCGTGAAGTCATTGCTATTCTCATGCAACGACATGTCCTTGTTGACGGCAAAGTCAGGACTGACAAGACTTATCCAGCTGGATTCATGGATGTTGTCTCAATCCCCAAAACAAATGAGAGCTTCCGTCTGCTTTATGACACCAAAGGCCGCTTCCGTCTCCACTCAGTCAGAGATGACGAGGCAAAGTTCAAGCTCTGCAAGGTTCGTTCAGTGCAATTTGGGCAGAAAGGTATCCCTTACCTCAACACCTATGATGGTCGCACAATCCGCTACCCAGACCCCGTCATCAGGGCTAACGACACCATCAAGCTGGATCTGGAGGAAAACAAGATCGTTGATTTCATCAAATTTGATGTTGGGAACGTCGTTATGGTTACTGGTGGTAAGAATAGGGGGCGTGTTGGAGTGATCAAGAACAGAGAAAAGCATAAGGGAACATTCGAGACAATCCACGTTCAGGATGCCACCGGTCATGAGTTTGCAACTCGGTTGGTCAATGTGTTTACTATTGGGAAGGGCACAAAGCCATGGGTATCTCTTCCCAAGGGTAAGGGTATTAAGCTTACAGTCATCGAGGAAGCTAGGAAGAGGGCTGCTGCTGCTCAACAAGCAGTTGCTGCTTAA

Protein sequence

>Msa1245270

MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNESFRLLYDTKGRFRLHSVRDDEAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPVIRANDTIKLDLEENKIVDFIKFDVGNVVMVTGGKNRGRVGVIKNREKHKGTFETIHVQDATGHEFATRLVNVFTIGKGTKPWVSLPKGKGIKLTVIEEARKRAAAAQQAVAA*